Query psy6555
Match_columns 178
No_of_seqs 117 out of 1084
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:06:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.4 3.9E-13 1.3E-17 112.5 6.4 122 16-150 161-313 (367)
2 1nu0_A Hypothetical protein YQ 50.3 23 0.00078 25.1 4.5 38 137-176 53-90 (138)
3 3umv_A Deoxyribodipyrimidine p 33.5 43 0.0015 28.9 4.4 16 90-105 65-80 (506)
4 3fy4_A 6-4 photolyase; DNA rep 28.1 34 0.0012 29.8 2.8 19 86-104 24-42 (537)
5 1vhx_A Putative holliday junct 28.1 81 0.0028 22.4 4.4 38 137-176 55-92 (150)
6 2yfv_C SCM3, KLLA0F05115P; cel 27.6 52 0.0018 20.1 2.7 22 152-173 17-38 (63)
7 1y0n_A Hypothetical UPF0270 pr 22.9 59 0.002 20.8 2.5 21 45-65 41-61 (78)
8 1vq3_A Phosphoribosylformylgly 21.7 80 0.0027 20.8 3.1 35 135-169 45-80 (94)
9 3ry0_A Putative tautomerase; o 19.9 1E+02 0.0034 18.0 3.1 26 152-177 10-35 (65)
10 1otf_A 4-oxalocrotonate tautom 19.8 1E+02 0.0035 17.4 3.1 26 152-177 10-35 (62)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.38 E-value=3.9e-13 Score=112.51 Aligned_cols=122 Identities=10% Similarity=0.054 Sum_probs=79.6
Q ss_pred ceeeeecCccc-hhhHHHHH--HhCCCCcC----C------HHHH----------HHHhcC-CCeEEEEcCCccccccc-
Q psy6555 16 TGSTVLDSNII-FSGLRILG--EGLRVIPG----T------VKQC----------SDILQD-NNIMAISPGGLYEAQLG- 70 (178)
Q Consensus 16 ~~~~la~~~l~-~P~l~~~l--~~~G~i~~----~------r~~~----------~~~L~~-G~~v~IfPeG~r~~~~~- 70 (178)
.+.++|++.++ .|+...+- +.++|+-. + |++. .+.|++ |.+++|||||||+....
T Consensus 161 ~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~ 240 (367)
T 1iuq_A 161 NTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPS 240 (367)
T ss_dssp HCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTT
T ss_pred ceEEEeehhhhcCccccchhhhhheeeEEecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCC
Confidence 57899999999 99886642 22334432 3 4432 234677 66999999999987543
Q ss_pred CCceEEeeecccCch----hhhHhcCCC--EEeeeecCcccchhcccchHHHHHHHHHHcCCCccceecCCCceeEEEEc
Q psy6555 71 DSYYKLMWRRRMGFA----KVAIEAKVP--IIPIFTRNIRESFRTVGWLKSFWNKLYIYTRLPLVPIYGGFPVKLVTYVG 144 (178)
Q Consensus 71 ~g~~~l~~~~r~Gf~----~lA~~~g~p--IVPv~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~vG 144 (178)
+|... .-+|+.|.+ ++|.++|+| ||||++. +.++++... ...+..... + .+ .++++.+.||
T Consensus 241 ~g~l~-~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~-t~~imppp~---~ve~~~g~~-r--~i-----~~~~V~v~ig 307 (367)
T 1iuq_A 241 TGEWY-PAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIMPPPS---QVEIEIGEK-R--VI-----AFNGAGLSVA 307 (367)
T ss_dssp TCCBC-CCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE-CGGGSCCC--------------C--CC-----CCBCCEEEEC
T ss_pred CCccc-cccccchhhhHHHHHHHHcCCCceEEEEEEE-eccccCCcc---ccccccccc-c--ee-----ecccEEEEEC
Confidence 34322 226888888 999999999 9999999 556664321 000001000 0 00 4689999999
Q ss_pred ccccCC
Q psy6555 145 EPIPYD 150 (178)
Q Consensus 145 ~PI~~~ 150 (178)
+||+++
T Consensus 308 ~pI~~~ 313 (367)
T 1iuq_A 308 PEISFE 313 (367)
T ss_dssp CCCCHH
T ss_pred Cccchh
Confidence 999975
No 2
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=50.28 E-value=23 Score=25.06 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=28.1
Q ss_pred ceeEEEEcccccCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy6555 137 VKLVTYVGEPIPYDPNLTPEELAKKVMRPKNNYYSLSDIP 176 (178)
Q Consensus 137 ~~i~i~vG~PI~~~~~~s~e~v~~~~~~~~~~l~~l~d~~ 176 (178)
..-.++||-|....+..+ +..+.++++.++|.+.+++|
T Consensus 53 ~v~~iVvGlP~~mdGt~~--~~~~~~~~f~~~L~~~~~lp 90 (138)
T 1nu0_A 53 QPDEIIVGLPLNMDGTEQ--PLTARARKFANRIHGRFGVE 90 (138)
T ss_dssp CCSEEEEEEEECTTSCBC--HHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEecccCCCcCcC--HHHHHHHHHHHHHHHHhCCC
Confidence 456899999999875444 44577788888887777776
No 3
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=33.53 E-value=43 Score=28.86 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.1
Q ss_pred hcCCCEEeeeecCccc
Q psy6555 90 EAKVPIIPIFTRNIRE 105 (178)
Q Consensus 90 ~~g~pIVPv~~~G~~~ 105 (178)
+.|.||+|||++....
T Consensus 65 ~~~~pVl~vfildp~~ 80 (506)
T 3umv_A 65 ASASPLAVAFALFPRP 80 (506)
T ss_dssp HHTCCEEEEEECCCTT
T ss_pred hcCCCEEEEEeccchh
Confidence 3689999999997653
No 4
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=28.14 E-value=34 Score=29.78 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=15.0
Q ss_pred hhhHhcCCCEEeeeecCcc
Q psy6555 86 KVAIEAKVPIIPIFTRNIR 104 (178)
Q Consensus 86 ~lA~~~g~pIVPv~~~G~~ 104 (178)
.-|++.+.||+|||++...
T Consensus 24 ~~A~~~~~~vlpvfi~dp~ 42 (537)
T 3fy4_A 24 EYASKGSEFMYPVFVIDPH 42 (537)
T ss_dssp HHHHTTCSCEEEEEEECHH
T ss_pred HHHHhcCCCEEEEEEeChh
Confidence 4467788999999999653
No 5
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=28.06 E-value=81 Score=22.36 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=23.8
Q ss_pred ceeEEEEcccccCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy6555 137 VKLVTYVGEPIPYDPNLTPEELAKKVMRPKNNYYSLSDIP 176 (178)
Q Consensus 137 ~~i~i~vG~PI~~~~~~s~e~v~~~~~~~~~~l~~l~d~~ 176 (178)
.+-.++||.|....+..+.+ .+.++.+.+.+.+.+++|
T Consensus 55 ~~~~ivVGlP~~~nGt~~~~--~~~ar~f~~~L~~~~~lp 92 (150)
T 1vhx_A 55 TIDKIVLGFPKNMNGTVGPR--GEASQTFAKVLETTYNVP 92 (150)
T ss_dssp EEEEEEEECCCCBTTBCCHH--HHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeeeecCCcchhHH--HHHHHHHHHHHHHhhCCC
Confidence 56689999998765433432 245566666665555665
No 6
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=27.63 E-value=52 Score=20.06 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh
Q psy6555 152 NLTPEELAKKVMRPKNNYYSLS 173 (178)
Q Consensus 152 ~~s~e~v~~~~~~~~~~l~~l~ 173 (178)
+.|.+++.+.+++.-+++++.+
T Consensus 17 ~lsdeevme~hk~adermK~~w 38 (63)
T 2yfv_C 17 KLSDEEVMERHKKADENMKRVW 38 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999888888764
No 7
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=22.88 E-value=59 Score=20.82 Aligned_cols=21 Identities=5% Similarity=0.037 Sum_probs=17.1
Q ss_pred HHHHHHhcCCCeEEEEcCCcc
Q psy6555 45 KQCSDILQDNNIMAISPGGLY 65 (178)
Q Consensus 45 ~~~~~~L~~G~~v~IfPeG~r 65 (178)
.++.+.|++|+.|++|=|=..
T Consensus 41 ~qv~~qL~~GeavIvfse~~E 61 (78)
T 1y0n_A 41 ERARHALRRGEAVILFDPESQ 61 (78)
T ss_dssp HHHHHHHHTTSEEEEECTTTC
T ss_pred HHHHHHHHcCCEEEEECCCCC
Confidence 467788999999999977554
No 8
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=21.65 E-value=80 Score=20.81 Aligned_cols=35 Identities=11% Similarity=-0.012 Sum_probs=26.6
Q ss_pred CCceeEEEEcccccCC-CCCCHHHHHHHHHHHHHHH
Q psy6555 135 FPVKLVTYVGEPIPYD-PNLTPEELAKKVMRPKNNY 169 (178)
Q Consensus 135 ~~~~i~i~vG~PI~~~-~~~s~e~v~~~~~~~~~~l 169 (178)
+..--.+.+|+-|.++ +..|.++..+.+++.+++|
T Consensus 45 ~~~V~~VR~GK~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 45 GLPVKKLRLGKSIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp CCCEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCccceeeeeeEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 3455688889999887 4456777788888888887
No 9
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=19.87 E-value=1e+02 Score=17.96 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCC
Q psy6555 152 NLTPEELAKKVMRPKNNYYSLSDIPQ 177 (178)
Q Consensus 152 ~~s~e~v~~~~~~~~~~l~~l~d~~~ 177 (178)
..|.|+-++..+.+.+.+.+.+++|.
T Consensus 10 Grs~eqk~~L~~~it~~~~~~lg~p~ 35 (65)
T 3ry0_A 10 GRSPQEVAALGEALTAAAHETLGTPV 35 (65)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 46888888888888888888887764
No 10
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=19.75 E-value=1e+02 Score=17.38 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCC
Q psy6555 152 NLTPEELAKKVMRPKNNYYSLSDIPQ 177 (178)
Q Consensus 152 ~~s~e~v~~~~~~~~~~l~~l~d~~~ 177 (178)
..|.|+-++..+.+.+.+.+.+++|.
T Consensus 10 grs~e~k~~l~~~i~~~l~~~lg~p~ 35 (62)
T 1otf_A 10 GRTDEQKETLIRQVSEAMANSLDAPL 35 (62)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 44788888888888888888877764
Done!