Query psy6555
Match_columns 178
No_of_seqs 117 out of 1084
Neff 7.8
Searched_HMMs 13730
Date Fri Aug 16 21:07:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iuqa_ c.112.1.1 (A:) Glycero 99.5 1.6E-14 1.2E-18 119.6 6.8 123 15-150 160-313 (367)
2 d1np7a2 c.28.1.1 (A:1-204) Cry 65.4 2.3 0.00017 30.0 3.3 19 85-103 24-42 (204)
3 d1owla2 c.28.1.1 (A:3-204) DNA 53.7 4.4 0.00032 28.5 3.0 22 81-103 16-37 (202)
4 d1nu0a_ c.55.3.8 (A:) Hypothet 51.6 9.9 0.00072 25.2 4.5 38 137-176 53-90 (138)
5 d1vhxa_ c.55.3.8 (A:) Hypothet 40.0 19 0.0014 23.7 4.4 38 137-176 54-91 (140)
6 d1fc4a_ c.67.1.4 (A:) 2-amino- 29.4 62 0.0045 24.5 6.6 66 91-172 326-397 (401)
7 d2bwna1 c.67.1.4 (A:2-397) 5-a 29.3 37 0.0027 26.1 5.2 13 90-102 326-338 (396)
8 d1neya_ c.1.1.1 (A:) Triosepho 29.0 72 0.0053 22.8 6.5 36 137-173 157-195 (247)
9 d1r2ra_ c.1.1.1 (A:) Triosepho 28.1 95 0.0069 22.1 7.1 79 85-173 111-194 (246)
10 d2j07a2 c.28.1.1 (A:2-171) DNA 27.5 26 0.0019 23.5 3.5 17 87-104 21-37 (170)
11 d1mo0a_ c.1.1.1 (A:) Triosepho 25.8 1.1E+02 0.0079 21.9 8.0 76 91-173 124-203 (257)
12 d1dqwa_ c.1.2.3 (A:) Orotidine 22.2 46 0.0033 23.9 4.3 11 140-150 230-240 (267)
13 d1iv0a_ c.55.3.8 (A:) Hypothet 21.7 11 0.00078 23.5 0.4 18 137-154 51-68 (98)
14 d1y0na_ d.291.1.1 (A:) Hypothe 20.7 32 0.0024 20.5 2.5 23 45-67 41-63 (78)
No 1
>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
Probab=99.48 E-value=1.6e-14 Score=119.63 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=83.2
Q ss_pred cceeeeecCccc-hhhHHHHHHhCCCCcCCHH----------------------HHHHHhcCC-CeEEEEcCCccccccc
Q psy6555 15 LTGSTVLDSNII-FSGLRILGEGLRVIPGTVK----------------------QCSDILQDN-NIMAISPGGLYEAQLG 70 (178)
Q Consensus 15 ~~~~~la~~~l~-~P~l~~~l~~~G~i~~~r~----------------------~~~~~L~~G-~~v~IfPeG~r~~~~~ 70 (178)
..++++|++.+| .|++++++++.|++++++. .+.+.|++| ..|+|||||||++...
T Consensus 160 r~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~~~~~~~~~al~~~~~lL~~Gg~~v~IfPEGTRsr~~~ 239 (367)
T d1iuqa_ 160 ENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDP 239 (367)
T ss_dssp HHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCT
T ss_pred cceEEEeehhhhccHHHHHHHHhCCEEEEeccccccccccccchhhhhhhHHHHHHHHHhhcCCeEEEEeccCcccCccc
Confidence 457899999999 9999999999999988432 123446666 5678999999986432
Q ss_pred -CCceEEeeeccc----CchhhhHhcCCC--EEeeeecCcccchhcccchHHHHHHHHHHcCCCccceecCCCceeEEEE
Q psy6555 71 -DSYYKLMWRRRM----GFAKVAIEAKVP--IIPIFTRNIRESFRTVGWLKSFWNKLYIYTRLPLVPIYGGFPVKLVTYV 143 (178)
Q Consensus 71 -~g~~~l~~~~r~----Gf~~lA~~~g~p--IVPv~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~v 143 (178)
+|+... -+|++ |+.+||.++|+| |+||++.|.+.+.+..... ....+. +. + ..+++.+.|
T Consensus 240 ~dg~l~p-~~F~~~~~~~~~~LA~~sgvP~hV~Pvai~~~d~~pP~~~v~----~~ige~-R~--~-----~~~~V~i~~ 306 (367)
T d1iuqa_ 240 STGEWYP-APFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVE----IEIGEK-RV--I-----AFNGAGLSV 306 (367)
T ss_dssp TTCCBCC-CCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC---------------CC--C-----CCBCCEEEE
T ss_pred ccccccc-cccCccchHHHHHHHhcCCCCceEechhhhcccccCCCcccc----cchhhc-cc--c-----CCCceeEEe
Confidence 232111 12333 357899999999 9999999887766543211 111110 11 1 457899999
Q ss_pred cccccCC
Q psy6555 144 GEPIPYD 150 (178)
Q Consensus 144 G~PI~~~ 150 (178)
|+||++.
T Consensus 307 G~pId~~ 313 (367)
T d1iuqa_ 307 APEISFE 313 (367)
T ss_dssp CCCCCHH
T ss_pred CCCcchh
Confidence 9999986
No 2
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=65.41 E-value=2.3 Score=30.02 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=15.4
Q ss_pred hhhhHhcCCCEEeeeecCc
Q psy6555 85 AKVAIEAKVPIIPIFTRNI 103 (178)
Q Consensus 85 ~~lA~~~g~pIVPv~~~G~ 103 (178)
...|.+.+.+|+|||++..
T Consensus 24 L~~A~~~~~~vi~vyi~dp 42 (204)
T d1np7a2 24 LHRALKSGLAITAVYCYDP 42 (204)
T ss_dssp HHHHHHTTSEEEEEEEECG
T ss_pred HHHHHhcCCcEEEEEEECc
Confidence 4567888999999999854
No 3
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=53.66 E-value=4.4 Score=28.45 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=16.3
Q ss_pred ccCchhhhHhcCCCEEeeeecCc
Q psy6555 81 RMGFAKVAIEAKVPIIPIFTRNI 103 (178)
Q Consensus 81 r~Gf~~lA~~~g~pIVPv~~~G~ 103 (178)
+.++. -|++.+.+|+|||++..
T Consensus 16 N~aL~-~A~~~~~~v~~vyi~dp 37 (202)
T d1owla2 16 NIGLA-AARAQSAQLIGLFCLDP 37 (202)
T ss_dssp CHHHH-HHHHHCSCEEEEEEECH
T ss_pred HHHHH-HHHhcCCcEEEEEEEcc
Confidence 34444 47788999999999954
No 4
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=51.63 E-value=9.9 Score=25.16 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=27.4
Q ss_pred ceeEEEEcccccCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy6555 137 VKLVTYVGEPIPYDPNLTPEELAKKVMRPKNNYYSLSDIP 176 (178)
Q Consensus 137 ~~i~i~vG~PI~~~~~~s~e~v~~~~~~~~~~l~~l~d~~ 176 (178)
..-.++||-|+...+..+ +..+.++++.++|.+.+++|
T Consensus 53 ~~~~iVvG~P~~~~g~~~--~~~~~v~~f~~~L~~~~~i~ 90 (138)
T d1nu0a_ 53 QPDEIIVGLPLNMDGTEQ--PLTARARKFANRIHGRFGVE 90 (138)
T ss_dssp CCSEEEEEEEECTTSCBC--HHHHHHHHHHHHHHHHHCCC
T ss_pred CccEEEeecccccccchH--HHHHHHHHHHHHHhhccCCC
Confidence 456889999999876555 34466677777777777766
No 5
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=39.97 E-value=19 Score=23.72 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=25.4
Q ss_pred ceeEEEEcccccCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy6555 137 VKLVTYVGEPIPYDPNLTPEELAKKVMRPKNNYYSLSDIP 176 (178)
Q Consensus 137 ~~i~i~vG~PI~~~~~~s~e~v~~~~~~~~~~l~~l~d~~ 176 (178)
..-.++||-|+...+..+. ..+.++.+.+.+.+.+++|
T Consensus 54 ~i~~iViGlP~~~dg~~~~--~~~~~~~f~~~l~~~~~i~ 91 (140)
T d1vhxa_ 54 TIDKIVLGFPKNMNGTVGP--RGEASQTFAKVLETTYNVP 91 (140)
T ss_dssp EEEEEEEECCCCBTTBCCH--HHHHHHHHHHHHHHHHCSC
T ss_pred ccceEEEecccccCCcchh--HHHHHHHHHHHhccCCCcc
Confidence 4568999999998765554 3345556666666665555
No 6
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=29.42 E-value=62 Score=24.51 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=35.0
Q ss_pred cCCCEEeeeecCcccchhcccchHHHHHHHHHHcCCCccceecCCCc------eeEEEEcccccCCCCCCHHHHHHHHHH
Q psy6555 91 AKVPIIPIFTRNIRESFRTVGWLKSFWNKLYIYTRLPLVPIYGGFPV------KLVTYVGEPIPYDPNLTPEELAKKVMR 164 (178)
Q Consensus 91 ~g~pIVPv~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~i~i~vG~PI~~~~~~s~e~v~~~~~~ 164 (178)
++.|||||.+..+... ..+.+.|.+. |+-+.++. +|+ ++++. +....|+|||+..++.
T Consensus 326 ~~~pIv~v~~~~~~~a-------~~~~~~L~~~-Gi~v~~i~--~PtVp~g~~~lRi~------~~a~hT~edId~~v~a 389 (401)
T d1fc4a_ 326 ADHAIIPVMLGDAVVA-------QKFARELQKE-GIYVTGFF--YPVVPKGQARIRTQ------MSAAHTPEQITRAVEA 389 (401)
T ss_dssp SSSSEEEEEEECHHHH-------HHHHHHHHHT-TEECCEEC--TTSSCTTCEEEEEE------CCTTCCHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHH-------HHHHHHHHHC-CceEEeEC--CCCCCCCCceEEEE------ECCCCCHHHHHHHHHH
Confidence 4579999988443322 2334455443 54333222 221 23332 2446789999877766
Q ss_pred HHHHHHhh
Q psy6555 165 PKNNYYSL 172 (178)
Q Consensus 165 ~~~~l~~l 172 (178)
+.+-.++|
T Consensus 390 l~ev~~~l 397 (401)
T d1fc4a_ 390 FTRIGKQL 397 (401)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55554443
No 7
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}
Probab=29.28 E-value=37 Score=26.11 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=9.9
Q ss_pred hcCCCEEeeeecC
Q psy6555 90 EAKVPIIPIFTRN 102 (178)
Q Consensus 90 ~~g~pIVPv~~~G 102 (178)
.++.||+||.+-.
T Consensus 326 ~~~spIvpv~ig~ 338 (396)
T d2bwna1 326 DHGSHIVPVVIGD 338 (396)
T ss_dssp CCSSSCEEEECCC
T ss_pred CCCCCEEEEEeCC
Confidence 3568999999844
No 8
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.00 E-value=72 Score=22.82 Aligned_cols=36 Identities=19% Similarity=0.061 Sum_probs=24.8
Q ss_pred ceeEEEEcccccCC---CCCCHHHHHHHHHHHHHHHHhhh
Q psy6555 137 VKLVTYVGEPIPYD---PNLTPEELAKKVMRPKNNYYSLS 173 (178)
Q Consensus 137 ~~i~i~vG~PI~~~---~~~s~e~v~~~~~~~~~~l~~l~ 173 (178)
.++.+.+ |||..- ..+|.+++.+.++.+.+.+.+++
T Consensus 157 ~~iiIAY-EPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~ 195 (247)
T d1neya_ 157 TNVVVAY-EPVWAIGTGLAATPEDAQDIHASIRKFLASKL 195 (247)
T ss_dssp TTEEEEE-CCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEe-cchhcccCCcccChhhhhhhhHHHHHHHHHhh
Confidence 4555555 888864 35788888888777777776554
No 9
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=28.11 E-value=95 Score=22.14 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=43.6
Q ss_pred hhhhHhcCCCEEeeeecCcccchhccc-chHHHHHHHHHHc-CCCccceecCCCceeEEEEcccccCC---CCCCHHHHH
Q psy6555 85 AKVAIEAKVPIIPIFTRNIRESFRTVG-WLKSFWNKLYIYT-RLPLVPIYGGFPVKLVTYVGEPIPYD---PNLTPEELA 159 (178)
Q Consensus 85 ~~lA~~~g~pIVPv~~~G~~~~~~~~~-~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~i~vG~PI~~~---~~~s~e~v~ 159 (178)
++.|++ .-+.|+.+.||+.--.... ....+.+.+...+ +.. ...++.+.+ |||..- ..+|.+++.
T Consensus 111 ~~~al~--~gl~pIlCVGEt~~er~~g~t~~~l~~Ql~~~l~~~~-------~~~~iiiAY-EPvWAIGTG~~a~~~~i~ 180 (246)
T d1r2ra_ 111 VAHALS--EGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVK-------DWSKVVLAY-EPVWAIGTGKTATPQQAQ 180 (246)
T ss_dssp HHHHHH--TTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCS-------CGGGEEEEE-CCGGGSSSSCCCCHHHHH
T ss_pred HHHhhc--cCceEEEEecCccccccccchhhhHHHHHHHHhhccc-------ccceEEEec-CceeeccCCCCccchhhh
Confidence 344455 4568999999853321111 1112222333221 111 124555555 888864 467889988
Q ss_pred HHHHHHHHHHHhhh
Q psy6555 160 KKVMRPKNNYYSLS 173 (178)
Q Consensus 160 ~~~~~~~~~l~~l~ 173 (178)
+.+....+.+.+++
T Consensus 181 ~~~~~Ir~~l~~~~ 194 (246)
T d1r2ra_ 181 EVHEKLRGWLKSNV 194 (246)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhh
Confidence 88887777776654
No 10
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=27.51 E-value=26 Score=23.48 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=12.4
Q ss_pred hhHhcCCCEEeeeecCcc
Q psy6555 87 VAIEAKVPIIPIFTRNIR 104 (178)
Q Consensus 87 lA~~~g~pIVPv~~~G~~ 104 (178)
-|.+.+ +++|||++..+
T Consensus 21 ~A~~~~-~vi~vfi~d~~ 37 (170)
T d2j07a2 21 EALARG-PVVGLVVLDPN 37 (170)
T ss_dssp HHHTTS-CEEEEEEECHH
T ss_pred HHHhcC-CEEEEEEEecc
Confidence 355554 89999999654
No 11
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=25.81 E-value=1.1e+02 Score=21.90 Aligned_cols=76 Identities=12% Similarity=-0.038 Sum_probs=39.7
Q ss_pred cCCCEEeeeecCcccchhccc-chHHHHHHHHHHcCCCccceecCCCceeEEEEcccccCC---CCCCHHHHHHHHHHHH
Q psy6555 91 AKVPIIPIFTRNIRESFRTVG-WLKSFWNKLYIYTRLPLVPIYGGFPVKLVTYVGEPIPYD---PNLTPEELAKKVMRPK 166 (178)
Q Consensus 91 ~g~pIVPv~~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~vG~PI~~~---~~~s~e~v~~~~~~~~ 166 (178)
...-+.|+.+.||+.--.... ....+.+.+...+.... -..++.+.+ |||..- ..++.+++.+.+....
T Consensus 124 l~~~l~pIlCvGE~~~~~~~~~~~~~~~~Ql~~~~~~~~------~~~~iiIAY-EPvWAIGtG~~a~~~~i~e~~~~Ir 196 (257)
T d1mo0a_ 124 LEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGV------SWENIVIAY-EPVWAIGTGKTASGEQAQEVHEWIR 196 (257)
T ss_dssp HHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTTC------CSTTEEEEE-CCGGGTTTSCCCCHHHHHHHHHHHH
T ss_pred hhccceEEEeeccccccccccchhheehhhhhccccccc------cccceEEEe-cchhhcccccccchhhhhhHHHHHH
Confidence 346688999999863322111 11111222222111100 124555555 888764 4678888888777666
Q ss_pred HHHHhhh
Q psy6555 167 NNYYSLS 173 (178)
Q Consensus 167 ~~l~~l~ 173 (178)
+-+.+++
T Consensus 197 ~~l~~~~ 203 (257)
T d1mo0a_ 197 AFLKEKV 203 (257)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 6665543
No 12
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.20 E-value=46 Score=23.90 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=9.0
Q ss_pred EEEEcccccCC
Q psy6555 140 VTYVGEPIPYD 150 (178)
Q Consensus 140 ~i~vG~PI~~~ 150 (178)
.++||+||.-.
T Consensus 230 ~iVVGR~I~~a 240 (267)
T d1dqwa_ 230 IIIVGRGLFAK 240 (267)
T ss_dssp EEEECGGGTST
T ss_pred EEEECChhcCC
Confidence 67899999854
No 13
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=21.75 E-value=11 Score=23.49 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=13.6
Q ss_pred ceeEEEEcccccCCCCCC
Q psy6555 137 VKLVTYVGEPIPYDPNLT 154 (178)
Q Consensus 137 ~~i~i~vG~PI~~~~~~s 154 (178)
..-.++||-|+...+..+
T Consensus 51 ~i~~iVvGlP~~~dG~~~ 68 (98)
T d1iv0a_ 51 GLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp TCCEEEEECCCCCCSSSC
T ss_pred ccceeEcccccccCCCcC
Confidence 466899999999874333
No 14
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.68 E-value=32 Score=20.47 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCeEEEEcCCcccc
Q psy6555 45 KQCSDILQDNNIMAISPGGLYEA 67 (178)
Q Consensus 45 ~~~~~~L~~G~~v~IfPeG~r~~ 67 (178)
.++.+.|++|+.+++|=+=+.++
T Consensus 41 ~qv~~qL~~G~~vI~fde~~Es~ 63 (78)
T d1y0na_ 41 ERARHALRRGEAVILFDPESQQC 63 (78)
T ss_dssp HHHHHHHHTTSEEEEECTTTCCE
T ss_pred HHHHHHHHcCCEEEEECCCCCeE
Confidence 46788899999999998876553
Done!