RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6555
(178 letters)
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 120 bits (302), Expect = 2e-34
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
Query: 27 FSGLRILGEGLRVIPGTVKQCSDILQDNNIMAISPGGLYEAQLG-DSYYKLMWRRRMGFA 85
GLR L L +PG+ + C +L++ ++ I PGG EA Y L+W++R GFA
Sbjct: 62 LPGLRDLLRRLGAVPGSRENCVRLLREGELVLIFPGGAREALKSKREEYYLLWKKRKGFA 121
Query: 86 KVAIEAKVPIIPIFTRNIRESFRTVGW-----LKSFWNKLYIYTRLPLVPIYGGFPVKLV 140
++A+ A PI+P+FT E FR +G K + L + RLPL P++G V
Sbjct: 122 RLALRAGAPIVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRRLPLYPVFGEPIVVPR 181
Query: 141 TYVGEPIPYDPNLTPEELAKKVMR 164
PIP P+ EEL +K +
Sbjct: 182 P----PIPDPPDEDVEELHQKYIA 201
>gnl|CDD|178380 PLN02783, PLN02783, diacylglycerol O-acyltransferase.
Length = 315
Score = 46.9 bits (112), Expect = 1e-06
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 26/174 (14%)
Query: 7 FIPTTGPT-LTGSTVLDSNIIFSG--LRILGEGLRVIPGTVKQCSDILQDNNIMAISPGG 63
+G L L S+ +F LR + L + P + K + +L+ I PGG
Sbjct: 120 LADLSGFLPLPKIRALASSAVFYTPFLRHIWTWLGLDPASRKNFTSLLKAGYSCIIVPGG 179
Query: 64 LYEA-QLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESF---RTVGWLKSFWNK 119
+ E + + R GF K+A+E P++P+F F R W K
Sbjct: 180 VQECLYMEHGSEVAYLKSRKGFVKIAMETGAPLVPVFC------FGQTRAYKWWKP-GGP 232
Query: 120 LY--IYTRLPLVPI-----YGG---FPVKLVTYVGEPIPY--DPNLTPEELAKK 161
L + + PI YG + VG+PI +P + EE+A+
Sbjct: 233 LVPKLSRAIGFTPIVFWGRYGSPIPHRTPMHVVVGKPIEVKKNPQPSQEEVAEV 286
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 39.9 bits (94), Expect = 2e-04
Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 40/134 (29%)
Query: 38 RVIPGTVKQCSDILQDNNIMAISP-------GGLYEAQLGDSYYKLMWRRRMGFAKVAIE 90
R +++ + L++ + I P G L + G ++A E
Sbjct: 81 RSAREALREAIEALKEGESVVIFPEGTRSRDGELLPF-------------KSGAFRLAKE 127
Query: 91 AKVPIIPIFTRNIRESFRTVGWLKSFWNKLYIYTRLPLVPIYGGFPVKLVTYVGEPIPYD 150
A VPI+P+ S L P ++ +GEPIP +
Sbjct: 128 AGVPIVPVAISGTWGSLPKGKKLP--------------------RPGRVTVRIGEPIPPE 167
Query: 151 PNLTPEELAKKVMR 164
EE K++
Sbjct: 168 GLELAEEDRKELRE 181
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 34.1 bits (78), Expect = 0.026
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 74 YKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWNKLYIYTRLPLVPIYG 133
+ + + G A++A+EA VPI+P+ E F ++ K V +
Sbjct: 153 GEELLPFKRGAARLALEAGVPIVPVAIVGAEELFPSLKKGK--------------VKVRI 198
Query: 134 GFPVKLVTYVGEPIPYDPNLTPEELAKKVMRPKNNYYSLSD 174
G P+ + +P + E+LA+ ++ Y+ D
Sbjct: 199 GPPIDISALPEPLLP-ELAEAVEQLARPILLELLPRYAAED 238
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 30.6 bits (70), Expect = 0.24
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 78 WRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFW 117
W+ GF +A A VPI+ ++ R +TVG F
Sbjct: 112 WKT--GFYHIARGAGVPILLVYLDYKR---KTVGIGPLFE 146
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 30.7 bits (70), Expect = 0.25
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 43 TVKQCSDILQDNNIMAISPGGLYEAQLGDSYYKLMWRR------RMGFAKVAIEAKVPII 96
++++ L++ + I P G S + R A++A +AK P++
Sbjct: 87 SLREALRHLKNGGALIIFPAG------RVSTASPPFGRVSDRPWNPFVARLARKAKAPVV 140
Query: 97 PIF 99
P++
Sbjct: 141 PVY 143
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 29.6 bits (67), Expect = 0.43
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 35 EGLRVIPGTVKQCSDILQDNNIMAISPGGLYEAQLGDSYYKLMWRRRMGFAKVAIEAKVP 94
E +R I +K ++L+ + + P G +K G +AI+A VP
Sbjct: 70 ENIRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKK------GAFHIAIKAGVP 123
Query: 95 IIPI 98
I+P+
Sbjct: 124 ILPV 127
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 29.6 bits (67), Expect = 0.45
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 38 RVIPGTVKQCSDILQDNNIMAISPGGLYEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIP 97
+ T++ ++L++ ++ I P G S + + G ++A EA VPI+P
Sbjct: 74 KDAANTLEYLVELLREGELVLIFPEG------TRSRGGELLPFKKGAFRLAREAGVPIVP 127
Query: 98 I 98
+
Sbjct: 128 V 128
>gnl|CDD|131180 TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome
subunit. This model describes a family of cytochrome b
proteins which appear to be specific for nickel-iron
hydrogenase complexes. Every genome which contains a
member of this family posesses a Ni/Fe hydrogenase
according to Genome Properties (GenProp0177), and most
are gene clustered with other hydrogenase components.
Some Ni/Fe hydrogenase-containing species lack a member
of this family but contain other CytB homologs
(pfam01292) which may substitute for it.
Length = 211
Score = 28.5 bits (64), Expect = 1.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 101 RNIRESFRTVGWLKSFWNKLYIYTRL-PLVPIYGGF-PVKLVTYVG 144
R R SFR K++ +L Y L GG+ P++ V Y G
Sbjct: 77 RYERFSFRDPLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFG 122
>gnl|CDD|115050 pfam06368, Met_asp_mut_E, Methylaspartate mutase E chain (MutE).
This family consists of several methylaspartate mutase E
chain proteins (EC:5.4.99.1). Glutamate mutase catalyzes
the first step in the fermentation of glutamate by
Clostridium tetanomorphum. This is an unusual
isomerisation in which L-glutamate is converted to
threo-beta-methyl L-aspartate.
Length = 441
Score = 28.6 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 6 PFIPTTGPTLTGSTVLDSNIIFSGLRILGEGLRVIPGTVKQCSDILQD 53
PF P TG TL ++ ++ I GL +G++ I Q ++ QD
Sbjct: 174 PFGPLTG-TLVPPSMSNAVSILEGLLAAEQGVKNITVGYGQVGNLTQD 220
>gnl|CDD|112781 pfam03982, DAGAT, Diacylglycerol acyltransferase. The terminal
step of triacylglycerol (TAG) formation is catalyzed by
the enzyme diacylglycerol acyltransferase (DAGAT).
Length = 297
Score = 28.5 bits (64), Expect = 1.9
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 55 NIMAISPGGLYEA-QLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTV--- 110
+ + GG EA + + L + R GF ++A++ ++P+++ + ++
Sbjct: 141 RAVVLVVGGAAEALEAHPGKHTLTLKNRKGFVRIALKTGADLVPVYSFGENDVYKQWENP 200
Query: 111 --GWLKSFWNKLYIYTRLPLVPIYGG------------FPVKLVTYVGEPIPYDPNLTP- 155
L+ KL +G F + T VG PI L P
Sbjct: 201 EGSRLRWVQEKLKRAIGFSPPIFHGRGVFNSYTFGLLPFRKPITTVVGAPIEVTKTLNPT 260
Query: 156 -EELAK 160
E++ +
Sbjct: 261 QEQIDE 266
>gnl|CDD|153245 cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: DUF374.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are the uncharacterized DUF374
phospholipid/glycerol acyltransferases and similar
proteins.
Length = 189
Score = 27.9 bits (63), Expect = 2.1
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 35/114 (30%)
Query: 50 ILQDNNIMAISPGG----LYEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRE 105
L+D +AI+P G Y+ + G +A ++ PI+P+ I
Sbjct: 93 ALKDGYNIAITPDGPRGPRYKVK-------------PGVILLARKSGAPIVPV---AIAA 136
Query: 106 SFRTVGWLKSFWNKLYIYTRLPLVPIYGGFPV-KLVTYVGEPIPYDPNLTPEEL 158
S LKS W++ +P P ++V GEPI P+ EEL
Sbjct: 137 SRAWR--LKS-WDR----FIIPK-------PFSRVVIVFGEPIHVPPDADEEEL 176
>gnl|CDD|130567 TIGR01503, MthylAspMut_E, methylaspartate mutase, E subunit. This
model represents the E (epsilon) subunit of
methylaspartate mutase (glutamate mutase), a
cobalamin-dependent enzyme that catalyzes the first step
in a pathway of glutamate fermentation [Energy
metabolism, Amino acids and amines, Energy metabolism,
Fermentation].
Length = 480
Score = 27.9 bits (62), Expect = 3.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 4 KRPFIPTTGPTLTGSTVLDSNIIFSGLRILGEGLRVIPGTVKQCSDILQD 53
+ PF P TG TL ++ ++ I GL +G++ I Q ++ QD
Sbjct: 211 REPFGPLTG-TLVPPSISNAIGIIEGLLAAEQGVKNITVGYGQVGNLTQD 259
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 26.9 bits (60), Expect = 3.2
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 42 GTVKQCSDILQDNNIMAISPGGLYEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPI 98
+++ ++L++ + I P E L +++ G A++A+EA VPI+P+
Sbjct: 63 AALREAVELLKEGEWLLIFP----EGTRSRPGKLLPFKK--GAARLALEAGVPIVPV 113
>gnl|CDD|227202 COG4865, COG4865, Glutamate mutase epsilon subunit [Amino acid
transport and metabolism].
Length = 485
Score = 26.8 bits (59), Expect = 8.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 4 KRPFIPTTGPTLTGSTVLDSNIIFSGLRILGEGLRVIPGTVKQCSDILQD 53
+ PF P TG TL + S I GL L +G++ I Q ++ QD
Sbjct: 213 REPFGPLTG-TLVPPFISHSIAIIEGLLALEQGVKSITVGYGQVGNLTQD 261
>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan, Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides, Central intermediary
metabolism, Amino sugars].
Length = 451
Score = 26.5 bits (59), Expect = 8.7
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 3 PKRPFIPTTGPTLT--GSTVLDSNIIFSGLRILGEGLRVIPGTVKQCSDILQDNNIMAIS 60
P R I T+ +D N+I G +G+ + + PG V + S I + I A S
Sbjct: 253 PARFDI---RGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYS 309
Query: 61 PGGLYEAQLGDS 72
L +++G+
Sbjct: 310 V--LEGSEIGEG 319
>gnl|CDD|222482 pfam13970, DUF4221, Domain of unknown function (DUF4221). This
family of bacterial proteins contains highly conserved
asparagine and cysteine residues. The function is not
known.
Length = 310
Score = 26.5 bits (59), Expect = 9.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 54 NNIMAISPGGLYEAQLGDSYYKLMWRRRMGFAKVAIE-AKVPIIPIFTRNIRESFR 108
N+ + I G LY QL + G A + ++ KV +IP+ +I + FR
Sbjct: 128 NSPLIIKDGKLYFGQLFYELPGEFIEKIKGLAIIDLKTKKVKLIPLDYPDIFKKFR 183
>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 26.4 bits (59), Expect = 9.4
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 19 TVLDSNIIFSGLRILGEGLRVIPGTVKQCSDILQDNNIMAISPGGLYEAQLGD 71
V++ N+I G ++G+ + + PG+V + S I + I A S + + +G+
Sbjct: 275 VVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSV--IEGSTVGE 325
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.143 0.442
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,623,531
Number of extensions: 903613
Number of successful extensions: 899
Number of sequences better than 10.0: 1
Number of HSP's gapped: 893
Number of HSP's successfully gapped: 30
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)