RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6555
         (178 letters)



>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
           subunit, PccB {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 27.0 bits (59), Expect = 1.2
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 55  NIMAISPGGLYEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFT----RNIRESFRTV 110
           N   ++        +G S  ++  ++ +    +A++  +P+I I      R         
Sbjct: 84  NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDALA 143

Query: 111 GWLKSFWNKLYIYTRLPLVPIYGGFPVKLVTY 142
           G+ + F         +P + +  G       Y
Sbjct: 144 GYGEIFLRNTLASGVVPQITVIAGPCAGGAVY 175


>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Thermus thermophilus [TaxId:
           274]}
          Length = 362

 Score = 27.2 bits (59), Expect = 1.4
 Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 136 PVKLVTYVGEPI-PYDPNLTPEELAK 160
           P++L+   GE +  +  +L  E+L +
Sbjct: 10  PIRLIGEEGEWLGDFPLDLEGEKLRR 35


>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 169

 Score = 26.6 bits (58), Expect = 1.4
 Identities = 6/30 (20%), Positives = 9/30 (30%)

Query: 131 IYGGFPVKLVTYVGEPIPYDPNLTPEELAK 160
            Y   P+ L     E       ++P E   
Sbjct: 118 PYFSTPLLLGKKGIEKNLGIGKISPFEEKM 147


>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli
          [TaxId: 562]}
          Length = 64

 Score = 24.3 bits (53), Expect = 2.5
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 32 ILGEGLRVIPGTVKQCSDILQDNNIMAIS 60
          ++G  L    G  K+   +L+  NI  I 
Sbjct: 6  LIGNDLSKACGVGKEVFGVLEPFNIRMIC 34


>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus
          jannaschii [TaxId: 2190]}
          Length = 100

 Score = 25.2 bits (55), Expect = 2.8
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 13 PTLTGSTVLDSNIIFSGLRILGEGLRVIPGTVKQCSDILQDNNI--MAISPG 62
            +   + + +  + +   I G G+  + GT  +    L +  +  + IS G
Sbjct: 4  SIVKAISTIKNVALIN---IFGAGMVGVSGTAARIFKALGEEEVNVILISQG 52


>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2
           {Crab-eating macaque (Macaca fascicularis) [TaxId:
           9541]}
          Length = 161

 Score = 24.8 bits (54), Expect = 4.9
 Identities = 6/48 (12%), Positives = 10/48 (20%), Gaps = 13/48 (27%)

Query: 95  IIPIFTRNIRESFRTVGWLK-----SFWNKLYIYTRLPLVPIYGGFPV 137
           I P   R   E+  +  ++                       Y G   
Sbjct: 34  ISPNVYRTPTEALASFDYIVREGKFGAVEGAVA--------KYMGAAA 73


>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
           N-terminal microtubule binding domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 120

 Score = 24.3 bits (53), Expect = 5.1
 Identities = 9/46 (19%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 74  YKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWNK 119
           +K++   + GF ++ ++  +P+  +     +++F  V W K F++ 
Sbjct: 63  FKIL---QAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDA 105


>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
          subdomain {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 267

 Score = 24.7 bits (52), Expect = 6.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 86 KVAIEAKVPIIP 97
           VA  AKVP IP
Sbjct: 8  IVAQSAKVPCIP 19


>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC
           {Listeria monocytogenes [TaxId: 1639]}
          Length = 159

 Score = 24.3 bits (53), Expect = 6.7
 Identities = 4/18 (22%), Positives = 6/18 (33%)

Query: 147 IPYDPNLTPEELAKKVMR 164
             Y P L  +   + V  
Sbjct: 32  QKYHPGLELDICRQNVEH 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.143    0.442 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,803
Number of extensions: 34860
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 13
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)