BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6556
(836 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 159 SSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTL 218
SS A + KPY C CG+SF + + H H + Y C C K++ D+K L
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDL 65
Query: 219 DNHILGHVDIKPYK---------QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETH 269
H H KPYK Q +NL++H R HTGE+P+ C C +F + HL H
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAH 124
Query: 270 VNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
H G+ K + C C S S + NL H R HT EKP+ C C K F ++ + H R
Sbjct: 125 QRTHTGE-KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 86/200 (43%), Gaps = 32/200 (16%)
Query: 247 GERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
GE+P+ C C +F HL H H G+ K + C C S S K +L +H R HT EK
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGE-KPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 307 PFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRHCEVCDKSNNSYL 366
P+ C C K F Q+ +++ H R +
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRT------------------------------HTGEKPY 106
Query: 367 LCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCK 426
C +CG S L L+AH ++H K P C CG +F N H R HTG KPY+C
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEK-PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 427 TCNASYASMRVLQHHEITHS 446
C S++ L H+ TH+
Sbjct: 166 ECGKSFSRRDALNVHQRTHT 185
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKK 77
E+ Y CP C K FS+ L H H +P +C CG+ F D L H R HT K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEKP 77
Query: 78 IYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
YKC +C K++ + H+ TH E Y C C H +AH
Sbjct: 78 --YKCPECGKSFSQRANLRAHQRTHTGE----------KPYACPECGKSFSQLAHLRAHQ 125
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHN 193
R H KPY C CG +F+ + + HQ HT KPY C CG+SF + + H
Sbjct: 126 RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 40 VGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHK 99
+ +P C CG+ F L H R HT K YKC +C K++ K RH+
Sbjct: 13 AALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEKP--YKCPECGKSFSDKKDLTRHQ 69
Query: 100 NTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKS 159
TH E Y C C R + +AH R H KPYAC CG +F+ +
Sbjct: 70 RTHTGEK----------PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 160 SRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLD 219
AHQ HT KPY C CG+SF + + H H + Y C C K++ R L+
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALN 178
Query: 220 NHILGHVDIK 229
H H K
Sbjct: 179 VHQRTHTGKK 188
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 73/171 (42%), Gaps = 11/171 (6%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCL 177
Y C C H H R H KPY C CG +F+ K HQ HT KPY C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 178 TCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYK----- 232
CG+SF ++ H H + Y C C K++ L H H KPYK
Sbjct: 82 ECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 233 ----QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
+ NL +H R HTGE+P++C C +F + L H H GK S
Sbjct: 141 KSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
Query: 367 LCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCK 426
C +CG S + L H ++H K P C CG +F + H R HTG KPY+C
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEK-PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 427 TCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQ 486
C S++ L+ H+ TH+ + C CGK F++L ++ H + H C C +
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 487 TMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQ 533
+ + L H H + + C C SFS L+ HQ GK+
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 82/204 (40%), Gaps = 32/204 (15%)
Query: 270 VNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
L G+ K + C C S S +L +H R HT EKP+ C C K F K + H R
Sbjct: 13 AALEPGE-KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 330 IHNMNFCDHCFKFVGPEQELNIFRHCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHH 389
+ C +CG S L+AH ++H
Sbjct: 72 ------------------------------HTGEKPYKCPECGKSFSQRANLRAHQRTHT 101
Query: 390 FPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
K P C CG +F + H R HTG KPY+C C S++ L H+ TH+
Sbjct: 102 GEK-PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 450 KFPCINCGKYFTKLEYMIKHMKRH 473
+ C CGK F++ + + H + H
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTH 184
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 79/193 (40%), Gaps = 33/193 (17%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYS 288
K + + +L H R HTGE+P++C C +F +K L H H G+ K + C C S
Sbjct: 29 KSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE-KPYKCPECGKS 86
Query: 289 SSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQE 348
S + NL H R HT EKP+ C C K F Q H++ H R
Sbjct: 87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT------------------- 127
Query: 349 LNIFRHCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNY 408
+ C +CG S + L H ++H K P C CG +F
Sbjct: 128 -----------HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK-PYKCPECGKSFSRRD 175
Query: 409 NYFVHMRRHTGFK 421
VH R HTG K
Sbjct: 176 ALNVHQRTHTGKK 188
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 38/205 (18%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVF 656
++P++C C +F++ L H+R H KPYKC +C S
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS-------------------- 58
Query: 657 KCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRR 716
FS K L RH++ H+ E P KC C +SF+ +NL AH H +
Sbjct: 59 --------FSDKKD--LTRHQRT-HTGEK--PYKCPECGKSFSQRANLRAHQRTHTGEKP 105
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGY 776
++C C +F+ L++L H+R E Y C CGKS+ + + H H K
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTGEK--- 160
Query: 777 TQRCHKCNATFRIKKFLTRHMKTHL 801
+C +C +F + L H +TH
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHT 185
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKF 451
++P C CG +F + + H R HTG KPY+C C S++ + L H+ TH+ +
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
C CGK F++ + H + H C C ++ + L+ H H + + C
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 512 CNASFSSMVQLSCHQIRAHGKQKQRFMCHRCG 543
C SFS L HQ R H +K + C CG
Sbjct: 139 CGKSFSREDNLHTHQ-RTHTGEKP-YKCPECG 168
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKK 77
E+ Y CP C K FS L RH H +P +C CG+ F L AH R HT K
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKP 105
Query: 78 IYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C +C K++ H+ TH E Y C C + H
Sbjct: 106 --YACPECGKSFSQLAHLRAHQRTHTGE----------KPYKCPECGKSFSREDNLHTHQ 153
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
R H KPY C CG +F+ + + + HQ HT K
Sbjct: 154 RTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 37/208 (17%)
Query: 419 GFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
G KPY C C S++ L H+ TH+ + C CGK F+ + + +H + H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFM 538
C C ++ + L+ H H + + C C SFS + L HQ
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ------------ 125
Query: 539 CHRCGIINLKRKYHVYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDR 598
+ H Y+C PE + F + N + H R H ++
Sbjct: 126 -----------RTHTGEKPYKC-------PECGKSFSRE-------DNLHTHQRTHTGEK 160
Query: 599 PFSCLLCNNTFAQLSTLLNHERIHDNHK 626
P+ C C +F++ L H+R H K
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 37/186 (19%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCN 510
+ C CGK F++ +++ +H + H C C ++ + + L RH H + + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 511 RCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRTLPPEL 570
C SFS L HQ R H +K + C CG K + HL+
Sbjct: 82 ECGKSFSQRANLRAHQ-RTHTGEKP-YACPECG----KSFSQLAHLR------------- 122
Query: 571 RRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
H R H ++P+ C C +F++ L H+R H KPYKC
Sbjct: 123 ------------------AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 631 TKCNYS 636
+C S
Sbjct: 165 PECGKS 170
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 498 MTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLKRKYHVYHLK 557
L + + C C SFS L+ HQ R H +K + C CG +K H +
Sbjct: 13 AALEPGEKPYACPECGKSFSRSDHLAEHQ-RTHTGEKP-YKCPECGKSFSDKKDLTRHQR 70
Query: 558 YECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLN 617
G PE + F + N H R H ++P++C C +F+QL+ L
Sbjct: 71 THTGEKPYKCPECGKSF-------SQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKC 658
H+R H KPYKC +C S N H+R + + +KC
Sbjct: 124 HQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 85/220 (38%), Gaps = 36/220 (16%)
Query: 613 STLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSC 672
S+ + + KPY C +C S + H+R + + +KC FS K
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD-- 64
Query: 673 LRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNL 732
L RH++ H+ E P KC C +SF+ +NL AH H + ++C C +F+ L++L
Sbjct: 65 LTRHQRT-HTGEK--PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 733 IRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKF 792
H+R E Y C CGKS+ + + H H K
Sbjct: 122 RAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTGEKP------------------ 161
Query: 793 LTRHMKTHLIQYRCTRCNKTFKQNTSFIRHSLKHFNSSNS 832
Y+C C K+F + + H H S
Sbjct: 162 -----------YKCPECGKSFSRRDALNVHQRTHTGKKTS 190
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKF 451
++P C CG +F + N H R HTG KPY+C C S++ LQ H+ TH+ +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 452 PCINCGKYFTKLEYMIKHMKRHFN 475
C CGK F++ +++ +H + H N
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQN 85
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKP 307
E+P++C C +F + +L+ H H G+ K + C C S S +L +H R HT EKP
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGE-KPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 308 FNCSLCEKQFRQKIHVKNHLRIIHN 332
+ C C K F + H+ H R N
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 35/76 (46%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCL 177
Y C C + + H R H KPY C CG +F+ S HQ HT KPY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 178 TCGQSFRTFNLMKRHN 193
CG+SF + + RH
Sbjct: 65 ECGKSFSRSDHLSRHQ 80
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNY 203
KPY C CG +F+ S+ HQ HT KPY C CG+SF + +++H H + Y
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPY 61
Query: 204 LCNFCNKTYKDRKTLDNHILGHVDIK 229
C C K++ L H H + K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKK 77
E+ Y CP C K FS+ + L++H H +P +C CG+ F L H R HT K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKP 60
Query: 78 IYYKCDKCNKTYKSKYKFERHKNTH 102
YKC +C K++ RH+ TH
Sbjct: 61 --YKCPECGKSFSRSDHLSRHQRTH 83
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYS 288
K + Q SNLQ H R HTGE+P++C C +F + L+ H H G+ K + C C S
Sbjct: 12 KSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE-KPYKCPECGKS 69
Query: 289 SSLKWNLIQHYRIHTDEK 306
S +L +H R H ++K
Sbjct: 70 FSRSDHLSRHQRTHQNKK 87
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 585 TNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKL 644
+N H R H ++P+ C C +F+Q S L H+R H KPYKC +C S +
Sbjct: 18 SNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLS 77
Query: 645 AHERIY 650
H+R +
Sbjct: 78 RHQRTH 83
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 421 KPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPV 480
KPY+C C S++ LQ H+ TH+ + C CGK F++ + KH + H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 481 CEICSQTMAHNQVLQRHMTLHFTQNK 506
C C ++ + + L RH H QNK
Sbjct: 63 CPECGKSFSRSDHLSRHQRTH--QNK 86
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 172 KPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPY 231
KPY C CG+SF + +++H H + Y C C K++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFS------------------ 43
Query: 232 KQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGK 276
Q S+LQ H R HTGE+P++C C +F HL H H K
Sbjct: 44 -QSSDLQKHQRT-HTGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVF 656
++P+ C C +F+Q S L H+R H KPYKC +C S S+ H+R + + +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 657 KCHINNCIFSTKFYSCLRRHRKI 679
KC FS + L RH++
Sbjct: 62 KCPECGKSFSRSDH--LSRHQRT 82
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKY 747
P KC C +SF+ SNL H H + + C C +F+ S+L +H+R E Y
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG--EKPY 61
Query: 748 VCNYCGKSYIDKRDYTNHVSVHMERK 773
C CGKS+ + H H +K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 368 CWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C +CG S + L+ H ++H K P C CG +F + + H R HTG KPY+C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEK-PYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 428 CNASYASMRVLQHHEITH 445
C S++ L H+ TH
Sbjct: 66 CGKSFSRSDHLSRHQRTH 83
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGY 776
+ C C +F+ SNL +H+R E Y C CGKS+ D H H K
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTG--EKPYKCPECGKSFSQSSDLQKHQRTHTGEK--- 59
Query: 777 TQRCHKCNATFRIKKFLTRHMKTH 800
+C +C +F L+RH +TH
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTH 83
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRI 139
YKC +C K++ ++H+ TH E Y C C + H R
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEK----------PYKCPECGKSFSQSSDLQKHQRT 54
Query: 140 HLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
H KPY C CG +F+ HQ H + K
Sbjct: 55 HTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCN 510
+ C CGK F++ + KH + H C C ++ + + LQ+H H + + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 511 RCNASFSSMVQLSCHQ 526
C SFS LS HQ
Sbjct: 65 ECGKSFSRSDHLSRHQ 80
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 744 EGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ 803
E Y C CGKS+ + H H K +C +C +F L +H +TH +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEK---PYKCPECGKSFSQSSDLQKHQRTHTGE 58
Query: 804 --YRCTRCNKTFKQNTSFIRHSLKHFN 828
Y+C C K+F ++ RH H N
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 585 TNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
++ H R H ++P+ C C +F++ L H+R H N K
Sbjct: 46 SDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 31/113 (27%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRHCEVCDKSNNS 364
EKP+ C C K F Q +++ H R +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTH------------------------------TGEK 31
Query: 365 YLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRH 417
C +CG S ++L+ H ++H K P C CG +F + + H R H
Sbjct: 32 PYKCPECGKSFSQSSDLQKHQRTHTGEK-PYKCPECGKSFSRSDHLSRHQRTH 83
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 250 PFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFN 309
P +C+ C F K L+TH+ H G K + C C+Y+++ +L +H RIH+DE+PF
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTG-VKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 310 CSLCEKQFRQKIHVKNHLR 328
C +C R + HLR
Sbjct: 67 CQICPYASRNSSQLTVHLR 85
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 37/86 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPC 453
P C VCG F HMR HTG KPY+CKTC+ + A L H HS F C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 454 INCGKYFTKLEYMIKHMKRHFNTNKP 479
C + H++ H + P
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGP 93
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ + L++H+R HTG +P++CK C+YA + L H+ +H + F C +C Y+S
Sbjct: 18 FSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIH-SDERPFKCQICPYASR 75
Query: 291 LKWNLIQHYRIHTDE 305
L H R HT +
Sbjct: 76 NSSQLTVHLRSHTGD 90
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 173 PYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYK 232
P+ C CG+ F + +K H C H V+ Y C C+ D
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADS----------------- 49
Query: 233 QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKT 277
S+L H+RI H+ ERPF+C+ C YA + L H+ H G +
Sbjct: 50 --SSLNKHLRI-HSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 595 GKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
G P C +C F++ L H R H KPYKC C+Y+A S+ H RI+ +
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 655 VFKCHINNCIFSTKFYSCLRRH 676
FKC I C ++++ S L H
Sbjct: 64 PFKCQI--CPYASRNSSQLTVH 83
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
K HMR H +P+ C C+ A S+L H RIH + +P+KC C Y++R S
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL 80
Query: 644 LAHERIYHQD 653
H R + D
Sbjct: 81 TVHLRSHTGD 90
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 133 FKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
K H+R H +KPY CK C A A SS + H IH+D +P+ C C + R + + H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 145 PYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYL 204
P+ C+ CG F+ K H HT +KPY C TC + + + +H L H D R +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFK 66
Query: 205 CNFCNKTYKDRKTLDNHILGHV-DIKP 230
C C ++ L H+ H D P
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGP 93
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 682 SNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHS 741
S+ S P KC++C + F+ L H H V+ + C C S+L +H RI HS
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HS 60
Query: 742 QHEGKYVCNYCGKSYIDKRDYTNHVSVHM 770
E + C C + + T H+ H
Sbjct: 61 D-ERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 453 CINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRC 512
C CGK F++ + + HM+ H C+ C A + L +H+ +H + C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 513 NASFSSMVQLSCHQIRAH 530
+ + QL+ H +R+H
Sbjct: 71 PYASRNSSQLTVH-LRSH 87
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 73 TSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYH 132
+S +KC+ C K + K K + H H Y C C Y
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP----------YKCKTCDYAAADSSS 51
Query: 133 FKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHT-DLKP 173
HLRIH + +P+ C+ C A + S H HT D P
Sbjct: 52 LNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGP 93
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 275 GKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
G + C VC S K L H R HT KP+ C C+ + HLRI
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 14 ESQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHT 73
S + C +C K FS+ LK H+ H +P +C C D LN H+R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HS 60
Query: 74 SNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
+ +KC C ++ + H +H ++
Sbjct: 61 DERP--FKCQICPYASRNSSQLTVHLRSHTGDSG 92
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 13/102 (12%)
Query: 41 GIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHKN 100
G + P +C CG+ F +L H+R HT K YKC C+ +H
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKP--YKCKTCDYAAADSSSLNKHLR 57
Query: 101 THVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRIHLN 142
H E + C C Y R HLR H
Sbjct: 58 IHSDERP----------FKCQICPYASRNSSQLTVHLRSHTG 89
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 422 PYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVC 481
P++C+ C ++ L+ H H+ + C C + KH++ H + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 482 EICSQTMAHNQVLQRHMTLHFTQNKHP 508
+IC ++ L H+ H T + P
Sbjct: 68 QICPYASRNSSQLTVHLRSH-TGDSGP 93
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F +K +L+TH+ +H G+ K F C +C + S L QH R HT E
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ-KPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 306 KPFNCSLCEKQFR----QKIHVKNHLR 328
KPF C +C ++F + H K HLR
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLR 87
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ Q +NL +HIRI HTG++PFQC+ C F + L H+ H G+ K F C++C +
Sbjct: 16 FSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE-KPFACDICGRKFA 73
Query: 291 LKWNLIQHYRIHTDEK 306
+H +IH +K
Sbjct: 74 TLHTRDRHTKIHLRQK 89
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ T L H+ IH +P +C C + F LN HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
K + CD C + + + + +RH H+ +
Sbjct: 61 KP--FACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R + + H+RIH KP+ C+ C F+ + + H HT KP+ C
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F T + RH
Sbjct: 68 CGRKFATLHTRDRHT 82
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F N H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F L +H K H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHL 86
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
KTN + H+RIH +PF C +C F+Q + L H R H KP+ C C L +
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTR 78
Query: 644 LAHERIY 650
H +I+
Sbjct: 79 DRHTKIH 85
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ +NL+ H H + F C C NF+ + L +H I+ E
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH--IRTHTGEK 61
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ C+ CG+ + H +H+ +K
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + K + H H + + C C H+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP----------FQCRICMRNFSQHTGLNQHI 54
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA +RD H IH
Sbjct: 55 RTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S L HI+ H ++P C +C F + H+R HTG KP+ C C
Sbjct: 12 CDRRFSQKTNLDTHIRIH-TGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 431 SYASMRVLQHHEITH 445
+A++ H H
Sbjct: 71 KFATLHTRDRHTKIH 85
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 51/133 (38%)
Query: 144 KPYAC--KYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVR 201
+PYAC + C F+ K++ D H IHT KP+ C
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC------------------------- 37
Query: 202 NYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFK 261
C + + L+ HI H GE+PF C C F
Sbjct: 38 ----RICMRNFSQHTGLNQHIRTHT--------------------GEKPFACDICGRKFA 73
Query: 262 EKHHLETHVNLHL 274
H + H +HL
Sbjct: 74 TLHTRDRHTKIHL 86
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKC--NYSARVLSNKLAHERIYHQ 652
+RP++C + C+ F+Q + L H RIH KP++C C N+S N+ H R +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQ--HIRTHTG 59
Query: 653 DHVFKCHINNCIFST 667
+ F C I F+T
Sbjct: 60 EKPFACDICGRKFAT 74
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
P +C + F++ + H++ H C IC + + + L +H+ H + C+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 512 CNASFSSM 519
C F+++
Sbjct: 68 CGRKFATL 75
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F +K +L+TH+ +H G+ K F C +C + S + +L H R HT E
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ-KPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 306 KPFNCSLCEKQFR----QKIHVKNHLR 328
KPF C +C ++F + H K HLR
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLR 87
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ Q +NL +HIRI HTG++PFQC+ C F ++ L H+ H G+ K F C++C +
Sbjct: 16 FSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGE-KPFACDICGRKFA 73
Query: 291 LKWNLIQHYRIHTDEK 306
+H +IH +K
Sbjct: 74 TLHTRTRHTKIHLRQK 89
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R + + H+RIH KP+ C+ C F+ ++S +AH HT KP+ C
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI 67
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F T + RH
Sbjct: 68 CGRKFATLHTRTRHT 82
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ T L H+ IH +P +C C + F LNAHIR HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTE 105
K + CD C + + + + RH H+ +
Sbjct: 61 KP--FACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
KTN + H+RIH +PF C +C F+Q ++L H R H KP+ C C L +
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTR 78
Query: 644 LAHERIY 650
H +I+
Sbjct: 79 TRHTKIH 85
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F N H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F L +H K H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHL 86
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 201 RNYLCNF--CNKTYKDRKTLDNHILGHVDIKPYK---------QLSNLQSHIRISHTGER 249
R Y C C++ + + LD HI H KP++ Q ++L +HIR +HTGE+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEK 61
Query: 250 PFQCKYCNYAFKEKHHLETHVNLHL 274
PF C C F H H +HL
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHL 86
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ +NL+ H H + F C C NF+ ++L H I+ E
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH--IRTHTGEK 61
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ C+ CG+ + T H +H+ +K
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKC--NYSARVLSNKLAHERIYHQ 652
+RP++C + C+ F+Q + L H RIH KP++C C N+S + N AH R +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLN--AHIRTHTG 59
Query: 653 DHVFKCHINNCIFST 667
+ F C I F+T
Sbjct: 60 EKPFACDICGRKFAT 74
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + K + H H + + C C + AH+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP----------FQCRICMRNFSQQASLNAHI 54
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA +R H IH
Sbjct: 55 RTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S L HI+ H K P C +C F + H+R HTG KP+ C C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQK-PFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 431 SYASMRVLQHHEITH 445
+A++ H H
Sbjct: 71 KFATLHTRTRHTKIH 85
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
+ + N H+R H ++PF+C +C FA L T H +IH K
Sbjct: 47 QASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
P +C + F++ + H++ H C IC + + L H+ H + C+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI 67
Query: 512 CNASFSSM 519
C F+++
Sbjct: 68 CGRKFATL 75
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 305 EKPFNCSL--CEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRHCEVCDKSN 362
E+P+ C + C+++F QK ++ H+RI +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI------------------------------HTG 31
Query: 363 NSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRH 417
C C S L AHI++H K P C +CG F T + H + H
Sbjct: 32 QKPFQCRICMRNFSQQASLNAHIRTHTGEK-PFACDICGRKFATLHTRTRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCN 286
K Y +LS+LQ H R HTGE+P+QC + C F L+ H H G K F C C
Sbjct: 16 KRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG-VKPFQCKTCQ 73
Query: 287 YSSSLKWNLIQHYRIHTDEKPFNCSL--CEKQFRQKIHVKNHLRIIHNM 333
S +L H R HT EKPF+C C+K+F + + H HNM
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH----HNM 118
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 199 DVRNYLCNF--CNKTYKDRKTLDNHILGHVDIKPYK-----------QLSNLQSHIRISH 245
+ R ++C + CNK Y L H H KPY+ + L+ H R H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RH 61
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCN--VCNYSSSLKWNLIQHYRIH 302
TG +PFQCK C F HL+TH H G+ K F+C C + L++H+ +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE-KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 246 TGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNV--CNYSSSLKWNLIQHYRI 301
+ +RPF C Y CN + + HL+ H H G+ K + C+ C S L +H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE-KPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
HT KPF C C+++F + H+K H R
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 364 SYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAV--CGDTFKTNYNYFVHMRRHTGFK 421
+Y C K FK L+ L+ H + H K P C C F + H RRHTG K
Sbjct: 10 AYPGCNKRYFK---LSHLQMHSRKHTGEK-PYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 422 PYQCKTCNASYASMRVLQHHEITHSKTLKFPC--INCGKYFTKLEYMIKH 469
P+QCKTC ++ L+ H TH+ F C +C K F + + +++H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 144 KPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFNLMKRHNLCDHQD 199
+P+ C Y C + S H HT KPY C C + F + +KRH H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTG 63
Query: 200 VRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKY--CN 257
V+ + C C + + + +L++H R +HTGE+PF C++ C
Sbjct: 64 VKPFQCKTCQRK-------------------FSRSDHLKTHTR-THTGEKPFSCRWPSCQ 103
Query: 258 YAFKEKHHLETHVNLH 273
F L H N+H
Sbjct: 104 KKFARSDELVRHHNMH 119
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 15/115 (13%)
Query: 85 CNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSF--CAYRGRYRYHFKAHLRIHLN 142
CNK Y + H H E Y C F C R K H R H
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKP----------YQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSF-RTFNLMKRHNL 194
+KP+ CK C F+ H HT KP+ C +C + F R+ L++ HN+
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
E+ Y C C ++FS+ LKRH H +P +C C + F L H R HT
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGE 92
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTH 102
K + C K + + RH N H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 585 TNFNIHMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSN 642
++ +H R H ++P+ C C F++ L H+R H KP++C C +
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 643 KLAHERIYHQDHVFKCHINNC 663
H R + + F C +C
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSC 102
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 47/160 (29%)
Query: 15 SQDERTYHC--PLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQ 70
+ ++R + C P C+K++ KL+ L+ H H +P +C + C + F +L H R
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR- 59
Query: 71 RHTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYR 130
RHT K ++C C + KF R
Sbjct: 60 RHTGVKP--FQCKTCQR------KFSRSD------------------------------- 80
Query: 131 YHFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIH 168
H K H R H KP++C++ C FA H N+H
Sbjct: 81 -HLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 681 HSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKH 740
H+ E K C + F+ L H +H V+ F C C F+ +L H R
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 741 SQHEGKYVCNY--CGKSYIDKRDYTNHVSVH 769
E + C + C K + + H ++H
Sbjct: 91 G--EKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKF 451
K+ IC CG F +YN +H R HT +PY C C+ ++ L+ H HSK F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPV 480
C CGK F + + H H T+ P
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQTSSPT 103
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHN 332
K F C C + +NL+ H R HTDE+P+ C +C K FR++ H+++H R IH+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHS 69
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
N IH R H +RP++C +C+ F + L +H IH KP+KC +C
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCL 177
+ C FC Y+ H R H + +PY C C AF + H+ IH+ KP+ C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 178 TCGQSF 183
CG+ F
Sbjct: 78 ECGKGF 83
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNY 203
K + CK+CG F + H+ HTD +PY C C ++FR + ++ H H + +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKPF 74
Query: 204 LCNFCNKTYKDRKTLDNHILGHV 226
C C K + +TL H H+
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHM 97
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 242 RISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRI 301
R+ ++ F CK+C F + ++L H H + + + C++C+ + + +L H I
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE-RPYTCDICHKAFRRQDHLRDHRYI 67
Query: 302 HTDEKPFNCSLCEKQF 317
H+ EKPF C C K F
Sbjct: 68 HSKEKPFKCQECGKGF 83
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 172 KPYLCLTCGQSF-RTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKP 230
K ++C CG+ F +++NL+ H D R Y C+ C+K ++ + L +H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERT--HTDERPYTCDICHKAFRRQDHLRDH--------- 64
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHL 274
R H+ E+PF+C+ C F + L H LH+
Sbjct: 65 -----------RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 691 CKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCN 750
CK C + F NL H H R ++C C F +L HR I HS+ E + C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSK-EKPFKCQ 77
Query: 751 YCGKSYIDKRDYTNHVSVHMERKS 774
CGK + R H ++HM+ S
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 236 NLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNL 295
NL H R +HT ERP+ C C+ AF+ + HL H +H K K F C C L
Sbjct: 32 NLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIH-SKEKPFKCQECGKGFCQSRTL 89
Query: 296 IQHYRIH 302
H +H
Sbjct: 90 AVHKTLH 96
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 71 RHTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYR 130
R S K + C C + + Y H+ TH E Y C C R +
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP----------YTCDICHKAFRRQ 58
Query: 131 YHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
H + H IH KP+ C+ CG F + H+ +H
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 17 DERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAH 67
DER Y C +C K F + L+ H IH K +P +C CG+ F L H
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 43/117 (36%), Gaps = 33/117 (28%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFK 657
+ F C C F + LL HER H + +PY C C H+ QDH
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC------------HKAFRRQDH--- 60
Query: 658 CHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKV 714
LR HR I HS E P KC+ C + F L H H++
Sbjct: 61 ---------------LRDHRYI-HSKEK--PFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 446 SKTLK-FPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQ 504
SKT K F C CG++FTK ++ H + H + C+IC + L+ H +H +
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 505 NKHPCNRCNASFSSMVQLSCHQI 527
C C F L+ H+
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKT 94
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 15 SQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQ-RHT 73
S+ ++ + C C + F+K L H H +P C C + F R H+R R+
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF----RRQDHLRDHRYI 67
Query: 74 SNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
+K+ +KC +C K + HK H+ +S
Sbjct: 68 HSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 741 SQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH 800
S+ + +++C +CG+ + + H H + + YT C C+ FR + L H H
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YT--CDICHKAFRRQDHLRDHRYIH 68
Query: 801 LIQ--YRCTRCNKTFKQNTSFIRHSLKHFNSSN 831
+ ++C C K F Q+ + H H +S+
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 366 LLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
+C CG + L H ++H ++P C +C F+ + H H+ KP++C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 426 KTCNASYASMRVLQHHEITHSKT 448
+ C + R L H+ H +T
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQT 99
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
H IH K++PF C C F Q TL H+ +H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 715 RRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ F C C +FT NL+ H R H+ E Y C+ C K++ + +H +H + K
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERT-HTD-ERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 775 GYTQRCHKCNATFRIKKFLTRHMKTHL 801
+C +C F + L H H+
Sbjct: 74 F---KCQECGKGFCQSRTLAVHKTLHM 97
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F + +L H+ +H G+ K F C +C + S +L H R HT E
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 KPFNCSLCEKQF----RQKIHVKNHLR 328
KPF C +C ++F +K H K HLR
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ SNL HIRI HTG++PFQC+ C F HL TH+ H G+ K F C++C +
Sbjct: 16 FSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICGRKFA 73
Query: 291 LKWNLIQHYRIHTDEK 306
+H +IH +K
Sbjct: 74 RSDERKRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS + L RH+ IH +P +C C + F L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTE 105
K + CD C + + + +RH H+ +
Sbjct: 61 KP--FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F + N H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F + + +H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R + H+RIH KP+ C+ C F+ H HT KP+ C
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F + KRH
Sbjct: 68 CGRKFARSDERKRHT 82
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 577 DIVYMDSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYS 636
D + DS +N H+RIH +PF C +C F++ L H R H KP+ C C
Sbjct: 13 DRRFSDS-SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 637 ARVLSNKLAHERIY 650
+ H +I+
Sbjct: 72 FARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 421 KPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
+PY C ++C+ ++ L H H+ F C C + F++ +++ H++ H
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQ 504
C+IC + A + +RH +H Q
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ SNL H H + F C C NF+ +L H I+ E
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--IRTHTGEK 61
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ C+ CG+ + + H +H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + RH H + + C C H H+
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA R H IH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S + L HI+ H ++P C +C F + + H+R HTG KP+ C C
Sbjct: 12 CDRRFSDSSNLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 431 SYASMRVLQHHEITH 445
+A + H H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
+RP++C + C+ F+ S L H RIH KP++C C + + H R + +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 655 VFKCHI 660
F C I
Sbjct: 62 PFACDI 67
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 656 FKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVR 715
+ C + +C S L RH +I H+ + P +C+IC ++F+ +L H H +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRI-HTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 716 RFSCTNCSLNFTYLSNLIRHRRI 738
F+C C F RH +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 744 EGKYVC--NYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHL 801
E Y C C + + D + T H+ +H +K +C C F LT H++TH
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPF---QCRICMRNFSRSDHLTTHIRTHT 58
Query: 802 IQ--YRCTRCNKTFKQNTSFIRHSLKHFNSSN 831
+ + C C + F ++ RH+ H +
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
P +C + F+ + +H++ H C IC + + + L H+ H + C+
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 512 CNASFS 517
C F+
Sbjct: 68 CGRKFA 73
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F + L H+ +H G+ K F C +C + S +L H R HT E
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 KPFNCSLCEKQF----RQKIHVKNHLR 328
KPF C +C ++F +K H K HLR
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ Q +L HIRI HTG++PFQC+ C F HL TH+ H G+ K F C++C +
Sbjct: 16 FSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICGRKFA 73
Query: 291 LKWNLIQHYRIHTDEK 306
+H +IH +K
Sbjct: 74 RSDERKRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ +L RH+ IH +P +C C + F L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
K + CD C + + + +RH H+ +
Sbjct: 61 KP--FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F + + H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F + + +H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R H+RIH KP+ C+ C F+ H HT KP+ C
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F + KRH
Sbjct: 68 CGRKFARSDERKRHT 82
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 421 KPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
+PY C ++C+ ++ L H H+ F C C + F++ +++ H++ H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQ 504
C+IC + A + +RH +H Q
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + RH H + + C C H H+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA R H IH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
H+RIH +PF C +C F++ L H R H KP+ C C + H +I
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 650 Y 650
+
Sbjct: 85 H 85
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ +L H H + F C C NF+ +L H I+ E
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--IRTHTGEK 61
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ C+ CG+ + + H +H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
+RP++C + C+ F+Q +L H RIH KP++C C + + H R + +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 655 VFKCHI 660
F C I
Sbjct: 62 PFACDI 67
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S L HI+ H K P C +C F + + H+R HTG KP+ C C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 431 SYA 433
+A
Sbjct: 71 KFA 73
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 42/133 (31%), Gaps = 51/133 (38%)
Query: 144 KPYAC--KYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVR 201
+PYAC + C F+ S H IHT KP+ C C ++F + DH
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF---------SRSDH---- 49
Query: 202 NYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFK 261
L HI H GE+PF C C F
Sbjct: 50 ----------------LTTHIRTHT--------------------GEKPFACDICGRKFA 73
Query: 262 EKHHLETHVNLHL 274
+ H +HL
Sbjct: 74 RSDERKRHTKIHL 86
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 656 FKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVR 715
+ C + +C L RH +I H+ + P +C+IC ++F+ +L H H +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRI-HTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 716 RFSCTNCSLNFTYLSNLIRHRRI 738
F+C C F RH +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 587 FNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
H+R H ++PF+C +C FA+ H +IH K
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
P +C + F++ + +H++ H C IC + + + L H+ H + C+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 512 CNASFS 517
C F+
Sbjct: 68 CGRKFA 73
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F L H+ +H G+ K F C +C + S +L H R HT E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 KPFNCSLCEKQF----RQKIHVKNHLR 328
KPF C +C ++F +K H K HLR
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ + L HIRI HTG++PFQC+ C F HL TH+ H G+ K F C++C +
Sbjct: 16 FSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICGRKFA 73
Query: 291 LKWNLIQHYRIHTDEK 306
+H +IH +K
Sbjct: 74 RSDERKRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ L RH+ IH +P +C C + F L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
K + CD C + + + +RH H+ +
Sbjct: 61 KP--FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F + H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F + + +H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R H+RIH KP+ C+ C F+ H HT KP+ C
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F + KRH
Sbjct: 68 CGRKFARSDERKRHT 82
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 421 KPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
+PY C ++C+ ++ L H H+ F C C + F++ +++ H++ H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQ 504
C+IC + A + +RH +H Q
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + + RH H + + C C H H+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA R H IH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
H+RIH +PF C +C F++ L H R H KP+ C C + H +I
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 650 Y 650
+
Sbjct: 85 H 85
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ L H H + F C C NF+ +L H I+ E
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--IRTHTGEK 61
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ C+ CG+ + + H +H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S +EL HI+ H ++P C +C F + + H+R HTG KP+ C C
Sbjct: 12 CDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 431 SYA 433
+A
Sbjct: 71 KFA 73
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
+RP++C + C+ F++ L H RIH KP++C C + + H R + +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 655 VFKCHI 660
F C I
Sbjct: 62 PFACDI 67
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 656 FKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVR 715
+ C + +C L RH +I H+ + P +C+IC ++F+ +L H H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRI-HTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 716 RFSCTNCSLNFTYLSNLIRHRRI 738
F+C C F RH +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 41/133 (30%), Gaps = 51/133 (38%)
Query: 144 KPYAC--KYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVR 201
+PYAC + C F+ H IHT KP+ C C ++F + DH
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF---------SRSDH---- 49
Query: 202 NYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFK 261
L HI H GE+PF C C F
Sbjct: 50 ----------------LTTHIRTHT--------------------GEKPFACDICGRKFA 73
Query: 262 EKHHLETHVNLHL 274
+ H +HL
Sbjct: 74 RSDERKRHTKIHL 86
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
P +C + F++ + + +H++ H C IC + + + L H+ H + C+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 512 CNASFS 517
C F+
Sbjct: 68 CGRKFA 73
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 587 FNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
H+R H ++PF+C +C FA+ H +IH
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F L H+ +H G+ K F C +C + S +L H R HT E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 KPFNCSLCEKQF----RQKIHVKNHLR 328
KPF C +C ++F +K H K HLR
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ + L HIRI HTG++PFQC+ C F HL TH+ H G+ K F C++C +
Sbjct: 16 FSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICGRKFA 73
Query: 291 LKWNLIQHYRIH 302
+H +IH
Sbjct: 74 RSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ L RH+ IH +P +C C + F L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHV 103
K + CD C + + + +RH H+
Sbjct: 61 KP--FACDICGRKFARSDERKRHTKIHL 86
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F + H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F + + +H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R H+RIH KP+ C+ C F+ H HT KP+ C
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F + KRH
Sbjct: 68 CGRKFARSDERKRHT 82
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 201 RNYLCNF--CNKTYKDRKTLDNHILGHVDIKPYK---------QLSNLQSHIRISHTGER 249
R Y C C++ + L HI H KP++ + +L +HIR +HTGE+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 250 PFQCKYCNYAFKEKHHLETHVNLHL 274
PF C C F + H +HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 421 KPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
+PY C ++C+ ++ L H H+ F C C + F++ +++ H++ H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 479 PVCEICSQTMAHNQVLQRHMTLHF 502
C+IC + A + +RH +H
Sbjct: 63 FACDICGRKFARSDERKRHTKIHL 86
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + + RH H + + C C H H+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA R H IH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
H+RIH +PF C +C F++ L H R H KP+ C C + H +I
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 650 Y 650
+
Sbjct: 85 H 85
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S +EL HI+ H ++P C +C F + + H+R HTG KP+ C C
Sbjct: 12 CDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 431 SYA 433
+A
Sbjct: 71 KFA 73
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ L H H + F C C NF+ +L H I+ E
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--IRTHTGEK 61
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHM 770
+ C+ CG+ + + H +H+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
+RP++C + C+ F++ L H RIH KP++C C + + H R + +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 655 VFKCHI 660
F C I
Sbjct: 62 PFACDI 67
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 646 HERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLN 705
HER Y C + +C L RH +I H+ + P +C+IC ++F+ +L
Sbjct: 1 HERPY------ACPVESCDRRFSRSDELTRHIRI-HTGQK--PFQCRICMRNFSRSDHLT 51
Query: 706 AHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
H H + F+C C F RH +I
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 32/73 (43%)
Query: 445 HSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQ 504
H + P +C + F++ + + +H++ H C IC + + + L H+ H +
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 505 NKHPCNRCNASFS 517
C+ C F+
Sbjct: 61 KPFACDICGRKFA 73
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFM 538
PV E C + + + L RH+ +H Q C C +FS L+ H IR H +K F
Sbjct: 8 PV-ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKP-FA 64
Query: 539 CHRCG 543
C CG
Sbjct: 65 CDICG 69
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 743 HEGKYVC--NYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH 800
HE Y C C + + + T H+ +H +K +C C F LT H++TH
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPF---QCRICMRNFSRSDHLTTHIRTH 57
Query: 801 LIQ--YRCTRCNKTFKQNTSFIRHSLKHF 827
+ + C C + F ++ RH+ H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F L H+ +H G+ K F C +C + S +L H R HT E
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 306 KPFNCSLCEKQF----RQKIHVKNHLR 328
KPF C +C ++F +K H K HLR
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIHLR 86
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ + L HIRI HTG++PFQC+ C F HL TH+ H G+ K F C++C +
Sbjct: 15 FSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICGRKFA 72
Query: 291 LKWNLIQHYRIH 302
+H +IH
Sbjct: 73 RSDERKRHTKIH 84
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ L RH+ IH +P +C C + F L HIR HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 59
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTE 105
K + CD C + + + +RH H+ +
Sbjct: 60 KP--FACDICGRKFARSDERKRHTKIHLRQ 87
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F + H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F + + +H K H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHL 85
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R H+RIH KP+ C+ C F+ H HT KP+ C
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F + KRH
Sbjct: 67 CGRKFARSDERKRHT 81
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 421 KPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
+PY C ++C+ ++ L H H+ F C C + F++ +++ H++ H
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQ 504
C+IC + A + +RH +H Q
Sbjct: 62 FACDICGRKFARSDERKRHTKIHLRQ 87
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 201 RNYLCNF--CNKTYKDRKTLDNHILGHVDIKPYK---------QLSNLQSHIRISHTGER 249
R Y C C++ + L HI H KP++ + +L +HIR +HTGE+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 60
Query: 250 PFQCKYCNYAFKEKHHLETHVNLHL 274
PF C C F + H +HL
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHL 85
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + + RH H + + C C H H+
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 53
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA R H IH
Sbjct: 54 RTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
H+RIH +PF C +C F++ L H R H KP+ C C + H +I
Sbjct: 24 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Query: 650 Y 650
+
Sbjct: 84 H 84
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S +EL HI+ H ++P C +C F + + H+R HTG KP+ C C
Sbjct: 11 CDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 431 SYA 433
+A
Sbjct: 70 KFA 72
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ L H H + F C C NF+ +L H I+ E
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--IRTHTGEK 60
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHM 770
+ C+ CG+ + + H +H+
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHL 85
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
+RP++C + C+ F++ L H RIH KP++C C + + H R + +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 655 VFKCHI 660
F C I
Sbjct: 61 PFACDI 66
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 656 FKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVR 715
+ C + +C L RH +I H+ + P +C+IC ++F+ +L H H +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRI-HTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 716 RFSCTNCSLNFTYLSNLIRHRRI 738
F+C C F RH +I
Sbjct: 61 PFACDICGRKFARSDERKRHTKI 83
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFM 538
PV E C + + + L RH+ +H Q C C +FS L+ H IR H +K F
Sbjct: 7 PV-ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKP-FA 63
Query: 539 CHRCG 543
C CG
Sbjct: 64 CDICG 68
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
P +C + F++ + + +H++ H C IC + + + L H+ H + C+
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 512 CNASFS 517
C F+
Sbjct: 67 CGRKFA 72
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F L H+ +H G+ K F C +C + S +L H R HT E
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 KPFNCSLCEKQF----RQKIHVKNHLR 328
KPF C +C ++F +K H K HLR
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ + + L HIRI HTG++PFQC+ C F HL TH+ H G+ K F C++C +
Sbjct: 16 FSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICGRKFA 73
Query: 291 LKWNLIQHYRIHTDEK 306
+H +IH +K
Sbjct: 74 RSDERKRHTKIHLRQK 89
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ L RH+ IH +P +C C + F L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
K + CD C + + + +RH H+ +
Sbjct: 61 KP--FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F + H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F + + +H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R H+RIH KP+ C+ C F+ H HT KP+ C
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F + KRH
Sbjct: 68 CGRKFARSDERKRHT 82
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 421 KPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
+PY C ++C+ ++ L H H+ F C C + F++ +++ H++ H
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQ 504
C+IC + A + +RH +H Q
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + + RH H + + C C H H+
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA R H IH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
H+RIH +PF C +C F++ L H R H KP+ C C
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ + L H H + F C C NF+ +L H I+ E
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--IRTHTGEK 61
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ C+ CG+ + + H +H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S EL HI+ H ++P C +C F + + H+R HTG KP+ C C
Sbjct: 12 CDRRFSRSAELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 431 SYA 433
+A
Sbjct: 71 KFA 73
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
+RP++C + C+ F++ + L H RIH KP++C C + + H R + +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 655 VFKCHI 660
F C I
Sbjct: 62 PFACDI 67
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 656 FKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVR 715
+ C + +C + L RH +I H+ + P +C+IC ++F+ +L H H +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRI-HTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 716 RFSCTNCSLNFTYLSNLIRHRRI 738
F+C C F RH +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 42/133 (31%), Gaps = 51/133 (38%)
Query: 144 KPYAC--KYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVR 201
+PYAC + C F+ + H IHT KP+ C C ++F + DH
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNF---------SRSDH---- 49
Query: 202 NYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFK 261
L HI H GE+PF C C F
Sbjct: 50 ----------------LTTHIRTHT--------------------GEKPFACDICGRKFA 73
Query: 262 EKHHLETHVNLHL 274
+ H +HL
Sbjct: 74 RSDERKRHTKIHL 86
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 37/119 (31%)
Query: 508 PCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRTLP 567
P C+ FS +L+ H IR H QK F C C + N R H+
Sbjct: 8 PVESCDRRFSRSAELTRH-IRIHTGQKP-FQCRIC-MRNFSRSDHL-------------- 50
Query: 568 PELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
H+R H ++PF+C +C FA+ H +IH K
Sbjct: 51 --------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
P +C + F++ + +H++ H C IC + + + L H+ H + C+
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 512 CNASFS 517
C F+
Sbjct: 68 CGRKFA 73
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 248 ERPFQC--KYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
ERP+ C + C+ F L H+ +H G+ K F C +C + S +L H R HT E
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 KPFNCSLCEKQF----RQKIHVKNHLR 328
KPF C +C ++F +K H K HLR
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSS 290
+ + ++L HIRI HTG++PFQC+ C F HL TH+ H G+ K F C++C +
Sbjct: 16 FSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICGRKFA 73
Query: 291 LKWNLIQHYRIHTDEK 306
+H +IH +K
Sbjct: 74 RSDERKRHTKIHLRQK 89
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ L RH+ IH +P +C C + F L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
K + CD C + + + +RH H+ +
Sbjct: 61 KP--FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTL 449
++P C V C F + + H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHF 474
F C CG+ F + + +H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT 178
P C R H+RIH KP+ C+ C F+ H HT KP+ C
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 179 CGQSFRTFNLMKRHN 193
CG+ F + KRH
Sbjct: 68 CGRKFARSDERKRHT 82
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 421 KPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
+PY C ++C+ ++ L H H+ F C C + F++ +++ H++ H
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 479 PVCEICSQTMAHNQVLQRHMTLHFTQ 504
C+IC + A + +RH +H Q
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 585 TNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKL 644
+ H+RIH +PF C +C F++ L H R H KP+ C C +
Sbjct: 20 ADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 645 AHERIY 650
H +I+
Sbjct: 80 RHTKIH 85
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 688 PAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
P C + C++ F+ ++L H H + F C C NF+ +L H I+ E
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--IRTHTGEK 61
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ C+ CG+ + + H +H+ +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 80 YKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
Y C + C++ + RH H + + C C H H+
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R H KP+AC CG FA R H IH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S +L HI+ H ++P C +C F + + H+R HTG KP+ C C
Sbjct: 12 CDRRFSRSADLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 431 SYA 433
+A
Sbjct: 71 KFA 73
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 597 DRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
+RP++C + C+ F++ + L H RIH KP++C C + + H R + +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 655 VFKCHI 660
F C I
Sbjct: 62 PFACDI 67
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 656 FKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVR 715
+ C + +C + L RH +I H+ + P +C+IC ++F+ +L H H +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRI-HTGQK--PFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 716 RFSCTNCSLNFTYLSNLIRHRRI 738
F+C C F RH +I
Sbjct: 62 PFACDICGRKFARSDERKRHTKI 84
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 42/133 (31%), Gaps = 51/133 (38%)
Query: 144 KPYAC--KYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVR 201
+PYAC + C F+ + H IHT KP+ C C ++F + DH
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNF---------SRSDH---- 49
Query: 202 NYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFK 261
L HI H GE+PF C C F
Sbjct: 50 ----------------LTTHIRTHT--------------------GEKPFACDICGRKFA 73
Query: 262 EKHHLETHVNLHL 274
+ H +HL
Sbjct: 74 RSDERKRHTKIHL 86
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
P +C + F++ + +H++ H C IC + + + L H+ H + C+
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 512 CNASFS 517
C F+
Sbjct: 68 CGRKFA 73
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 744 EGKYVC--NYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHL 801
E Y C C + + D T H+ +H +K +C C F LT H++TH
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPF---QCRICMRNFSRSDHLTTHIRTHT 58
Query: 802 IQ--YRCTRCNKTFKQNTSFIRHSLKHFNSSN 831
+ + C C + F ++ RH+ H +
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNY 203
K Y C+ CG +F HKS RD H ++H L+PY C CG+ F+ + + H + H ++ Y
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPY 66
Query: 204 LCNFCNKTYKDRKTLDNHI 222
CN C K + R + H+
Sbjct: 67 ECNICAKRFMWRDSFHRHV 85
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
+G++ + C+ C +F K + H+++HLG + + C VC +K +L+ H +IHT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 306 KPFNCSLCEKQF 317
KP+ C++C K+F
Sbjct: 64 KPYECNICAKRF 75
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 117 IYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+YPC C ++ H+ +HL ++PY C CG F K H IHT +KPY C
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 177 LTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDN 220
C + F + RH C K+Y+ K N
Sbjct: 69 NICAKRFMWRDSFHRH------------VTSCTKSYEAAKAEQN 100
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 387 SHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTC 428
S H +P C VCG FK ++ HM+ HTG KPY+C C
Sbjct: 30 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVC 285
H G RP+ C C FK KHHL H+ +H G K + CN+C
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG-IKPYECNIC 71
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 74 SNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHF 133
S+ Y C +C K++ K + +RH + H+ Y C C + + ++H
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP----------YGCGVCGKKFKMKHHL 53
Query: 134 KAHLRIHLNIKPYACKYCGNAFAHKSS 160
H++IH IKPY C C F + S
Sbjct: 54 VGHMKIHTGIKPYECNICAKRFMWRDS 80
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
K+ + HM +H RP+ C +C F L+ H +IH KPY+C C
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 747 YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH--LIQY 804
Y C CGKS+ K H+S+H+ + C C F++K L HMK H + Y
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLR---PYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 805 RCTRCNKTFKQNTSFIRH 822
C C K F SF RH
Sbjct: 67 ECNICAKRFMWRDSFHRH 84
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 15 SQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTS 74
S ++ Y C C K F+ + RH+ +H+ +P CG CG+ F L H++ HT
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTG 62
Query: 75 NKKIYYKCDKCNKTYKSKYKFERH 98
K Y+C+ C K + + F RH
Sbjct: 63 IKP--YECNICAKRFMWRDSFHRH 84
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 694 CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG--KYVCNY 751
C +SF S + H + HL +R + C C F +L+ H +I H G Y CN
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI----HTGIKPYECNI 70
Query: 752 CGKSYIDKRDYTNHVS 767
C K ++ + + HV+
Sbjct: 71 CAKRFMWRDSFHRHVT 86
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 418 TGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTN 477
+G K Y C+ C S+ H H + C CGK F +++ HMK H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 478 KPVCEICSQTMAHNQVLQRHMT 499
C IC++ RH+T
Sbjct: 65 PYECNICAKRFMWRDSFHRHVT 86
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCN 510
+PC CGK FT +HM H C +C + L HM +H + CN
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 511 RCNASF 516
C F
Sbjct: 70 ICAKRF 75
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 285 CNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
C S + K +H +H +P+ C +C K+F+ K H+ H++I
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRH 735
P C +C + F + +L H H ++ + C C+ F + + RH
Sbjct: 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 202 NYLCNFCNKTYKDRKTLDNHILGHVDIKPYK---------QLSNLQSHIRISHTGERPFQ 252
++ C C K++K TL H+L H D +PY Q S+++ H I HTGE+P +
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHK 59
Query: 253 CKYCNYAFKEKHHLETHVNLHLG 275
C+ C AF + +L TH H G
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCL 177
+ C C + HL IH + +PY C+YCG F KS H IHT KP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 178 TCGQSF-RTFNLM 189
CG++F ++ NL+
Sbjct: 62 VCGKAFSQSSNLI 74
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 251 FQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNC 310
F CK C +FK L TH+ +H T+ + C C K ++ +H IHT EKP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH-SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 311 SLCEKQFRQKIHVKNHLR 328
+C K F Q ++ H R
Sbjct: 61 QVCGKAFSQSSNLITHSR 78
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 585 TNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKL 644
+ + H+ IH RP+ C C F Q S + H IH KP+KC C + SN +
Sbjct: 15 STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLI 74
Query: 645 AHER 648
H R
Sbjct: 75 THSR 78
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINC 456
C +CG +FK + H+ H+ +PY C+ C + ++ H H+ C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 457 GKYFTKLEYMIKHMKRH 473
GK F++ +I H ++H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 423 YQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCE 482
+ CK C S+ L H + HS T +PC CGK F + M KH H C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 483 ICSQTMAHNQVLQRHMTLH 501
+C + + + L H H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRI 139
+ C C K++K H H YPC +C R + K H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP----------YPCQYCGKRFHQKSDMKKHTFI 51
Query: 140 HLNIKPYACKYCGNAFAHKSSRDAHQNIHTD 170
H KP+ C+ CG AF+ S+ H HT
Sbjct: 52 HTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 33/112 (29%)
Query: 600 FSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCH 659
F C +C +F + STL H IH + +PY C C K H++ + H F
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYC--------GKRFHQKSDMKKHTF--- 50
Query: 660 INNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKH 711
H+ E P KC++C ++F+ SNL H KH
Sbjct: 51 --------------------IHTGE--KPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 279 SFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
SF+C +C S L H IH+D +P+ C C K+F QK +K H I
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 20 TYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIY 79
++ C +C K F + +TL H+ IH T+P C YCG+ F + H HT K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKP-- 57
Query: 80 YKCDKCNKTYKSKYKFERHKNTHV 103
+KC C K + H H
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHT 81
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 17 DERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQ 70
D R Y C C K+F + + +K+H IH +P +C CG+ F L H R+
Sbjct: 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCN 510
F C CGK F + + H+ H +T C+ C + +++H +H + H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 511 RCNASFSSMVQLSCHQIRAHG 531
C +FS L H + G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 691 CKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCN 750
CKIC +SF S L+ H H R + C C F S++ +H I E + C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG--EKPHKCQ 61
Query: 751 YCGKSYIDKRDYTNHVSVH 769
CGK++ + H H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 747 YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ--Y 804
+ C CGKS+ + H+ +H + + C C F K + +H H + +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP---YPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 805 RCTRCNKTFKQNTSFIRHSLKH 826
+C C K F Q+++ I HS KH
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKH 80
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDN 624
K++ H IH ++P C +C F+Q S L+ H R H
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 368 CWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG + L H+ H +P C CG F + H HTG KP++C+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHS-DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 428 CNASYASMRVLQHHEITHSK 447
C +++ L ITHS+
Sbjct: 63 CGKAFSQSSNL----ITHSR 78
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 656 FKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVR 715
F C I C S K S L H + HS+ P C+ C + F S++ H H +
Sbjct: 2 FDCKI--CGKSFKRSSTLSTHL-LIHSDT--RPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 716 RFSCTNCSLNFTYLSNLIRHRR 737
C C F+ SNLI H R
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSR 78
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHV--NLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIH 302
HTGE+PF+C C + K +L H N + F C+VC + + L H H
Sbjct: 30 HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Query: 303 TDEKPFNCSLCEKQFRQKIHVKNHLRIIHN 332
T E P+ CS C +QF QK +++H+ +H+
Sbjct: 90 TGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 23/133 (17%)
Query: 148 CKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQS-FRTFNLMKRHNL-CDHQDVRNYLC 205
C C F K H HT KP+ C CG+ FR NL++ C ++ + + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 206 NFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHH 265
+ C +T++ R L H+ +SHTGE P++C C+ F +K
Sbjct: 70 SVCQETFRRRMELRLHM--------------------VSHTGEMPYKCSSCSQQFMQKKD 109
Query: 266 LETH-VNLHLGKT 277
L++H + LH G +
Sbjct: 110 LQSHMIKLHSGPS 122
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 418 TGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRH-FNT 476
+G +C TC+ + S L+ H H+ F C CGK + + E +++H R+ N
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 477 NKPV--CEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAH 530
++ V C +C +T L+ HM H + + C+ C+ F L H I+ H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHE----ITHSKTLKFP 452
C C F + Y VH R+HTG KP++C C Y L HE + S+ + F
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FT 68
Query: 453 CINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHM 498
C C + F + + HM H C CSQ + LQ HM
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 368 CWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C KC F+ L E +A + +Q C+VC +TF+ +HM HTG PY+C +
Sbjct: 41 CGKCYFRKENLLEHEAR-NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Query: 428 CNASYASMRVLQHHEI 443
C+ + + LQ H I
Sbjct: 100 CSQQFMQKKDLQSHMI 115
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 744 EGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHL-- 801
E + C CGK Y K + H + + +S C C TFR + L HM +H
Sbjct: 33 EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92
Query: 802 IQYRCTRCNKTFKQNTSFIRHSLKHFNSSNSD 833
+ Y+C+ C++ F Q H +K + +S
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 11/133 (8%)
Query: 15 SQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTS 74
S CP C K+F LK H H +P C CG+ + L H + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 75 NKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFK 134
+ + C C +T++ + + H +H E Y CS C+ + + +
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP----------YKCSSCSQQFMQKKDLQ 111
Query: 135 AHLRIHLNIKPYA 147
+H+ I L+ P +
Sbjct: 112 SHM-IKLHSGPSS 123
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 47/140 (33%), Gaps = 30/140 (21%)
Query: 602 CLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHIN 661
C C+ F L H R H KP++C KC N L HE
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA------------- 56
Query: 662 NCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTN 721
+C+ R ++F C +C ++F L H H + C++
Sbjct: 57 --------RNCMNRSEQVF---------TCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Query: 722 CSLNFTYLSNLIRHRRIKHS 741
CS F +L H HS
Sbjct: 100 CSQQFMQKKDLQSHMIKLHS 119
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 7 EEQCMPHESQD-----ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDL 61
+E + HE+++ E+ + C +C + F + L+ H+ H P +C C Q F+
Sbjct: 48 KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
Query: 62 GRLNAHIRQRHTS 74
L +H+ + H+
Sbjct: 108 KDLQSHMIKLHSG 120
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 81 KCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRIH 140
+C C+K + SKY + H H E + C C Y +R +A ++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCY------FRKENLLEHEARNCMN 61
Query: 141 LNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNL 194
+ + + C C F + H HT PY C +C Q F ++ H +
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 30/128 (23%)
Query: 583 SKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSN 642
SK +H R H ++PF C C + + LL HE AR N
Sbjct: 19 SKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE-----------------ARNCMN 61
Query: 643 KLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFS 702
+ + VF C + F + LR H + H+ E P KC C+Q F
Sbjct: 62 R--------SEQVFTCSVCQETFRRRME--LRLHM-VSHTGE--MPYKCSSCSQQFMQKK 108
Query: 703 NLNAHYNK 710
+L +H K
Sbjct: 109 DLQSHMIK 116
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 361 SNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGF 420
S +S + C C K LK H + H K P C CG + N H R+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEK-PFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 421 KPYQ---CKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHM 470
+ Q C C ++ L+ H ++H+ + + C +C + F + + + HM
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 398 AVCGDTFKTNYNYFVHMRRHTGFKPYQCK--TCNASYASMRVLQHHEITHSKTLKFPCIN 455
A CG T+ + + H+R HTG KPY C C +A L H H+ F C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 456 CGKYFTKLEYMIKHMKRHF 474
C + F++ +++ HMKRHF
Sbjct: 71 CDRAFSRSDHLALHMKRHF 89
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 28/100 (28%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYS 288
K Y + S+L++H+R +HTGE+P+ C + + C +
Sbjct: 15 KTYTKSSHLKAHLR-THTGEKPYHCDW---------------------------DGCGWK 46
Query: 289 SSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLR 328
+ L +HYR HT +PF C C++ F + H+ H++
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 208 CNKTYKDRKTLDNHILGHVDIKPY-----------KQLSNLQSHIRISHTGERPFQCKYC 256
C KTY L H+ H KPY + L H R HTG RPFQC+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKC 71
Query: 257 NYAFKEKHHLETHVNLHL 274
+ AF HL H+ H
Sbjct: 72 DRAFSRSDHLALHMKRHF 89
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 132 HFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSF-RTFNL 188
H KAHLR H KPY C + CG FA H HT +P+ C C ++F R+ +L
Sbjct: 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 189 ---MKRH 192
MKRH
Sbjct: 82 ALHMKRH 88
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 585 TNFNIHMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
++ H+R H ++P+ C C FA+ L H R H H+P++C KC+
Sbjct: 21 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 454 INCGKYFTKLEYMIKHMKRHFNTNKPVCEI--CSQTMAHNQVLQRHMTLHFTQNKHPCNR 511
CGK +TK ++ H++ H C+ C A + L RH H C +
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 512 CNASFSSMVQLSCHQIR 528
C+ +FS L+ H R
Sbjct: 71 CDRAFSRSDHLALHMKR 87
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 694 CNQSFALFSNLNAHYNKHLKVRRFSC--TNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNY 751
C +++ S+L AH H + + C C F L RH R KH+ H + C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHR-PFQCQK 70
Query: 752 CGKSYIDKRDYTNHVSVHMER 772
C +++ ++H+++HM+R
Sbjct: 71 CDRAF----SRSDHLALHMKR 87
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 26 CSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSNKKIYYKCD 83
C K ++K + LK H+ H +P C + CG F L H R +HT ++ ++C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRP--FQCQ 69
Query: 84 KCNKTY 89
KC++ +
Sbjct: 70 KCDRAF 75
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 747 YVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ- 803
+ C+Y CGK+Y H+ H K Y C F LTRH + H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 804 -YRCTRCNKTFKQNTSFIRHSLKHF 827
++C +C++ F ++ H +HF
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 146 YACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFNLMKRHNLCDHQDVR 201
+ C Y CG + S AH HT KPY C CG F + + RH H R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHR 64
Query: 202 NYLCNFCNKTYKDRKTLDNHILGH 225
+ C C++ + L H+ H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 398 AVCGDTFKTNYNYFVHMRRHTGFKPYQCK--TCNASYASMRVLQHHEITHSKTLKFPCIN 455
A CG T+ + + H+R HTG KPY C C +A L H H+ F C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 456 CGKYFTKLEYMIKHMKRHF 474
C + F++ +++ HMKRHF
Sbjct: 72 CDRAFSRSDHLALHMKRHF 90
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 28/100 (28%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYS 288
K Y + S+L++H+R +HTGE+P+ C + + C +
Sbjct: 16 KTYTKSSHLKAHLR-THTGEKPYHCDW---------------------------DGCGWK 47
Query: 289 SSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLR 328
+ L +HYR HT +PF C C++ F + H+ H++
Sbjct: 48 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 208 CNKTYKDRKTLDNHILGHVDIKPY-----------KQLSNLQSHIRISHTGERPFQCKYC 256
C KTY L H+ H KPY + L H R HTG RPFQC+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKC 72
Query: 257 NYAFKEKHHLETHVNLHL 274
+ AF HL H+ H
Sbjct: 73 DRAFSRSDHLALHMKRHF 90
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 132 HFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSF-RTFNL 188
H KAHLR H KPY C + CG FA H HT +P+ C C ++F R+ +L
Sbjct: 23 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 189 ---MKRH 192
MKRH
Sbjct: 83 ALHMKRH 89
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 585 TNFNIHMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
++ H+R H ++P+ C C FA+ L H R H H+P++C KC+
Sbjct: 22 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 446 SKTLKFPC--INCGKYFTKLEYMIKHMKRHFNTNKPVCEI--CSQTMAHNQVLQRHMTLH 501
S+T C CGK +TK ++ H++ H C+ C A + L RH H
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 502 FTQNKHPCNRCNASFSSMVQLSCHQIR 528
C +C+ +FS L+ H R
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLALHMKR 88
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 694 CNQSFALFSNLNAHYNKHLKVRRFSC--TNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNY 751
C +++ S+L AH H + + C C F L RH R KH+ H + C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHR-PFQCQK 71
Query: 752 CGKSYIDKRDYTNHVSVHMER 772
C +++ ++H+++HM+R
Sbjct: 72 CDRAF----SRSDHLALHMKR 88
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 26 CSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSNKKIYYKCD 83
C K ++K + LK H+ H +P C + CG F L H R +HT ++ ++C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRP--FQCQ 70
Query: 84 KCNKTY 89
KC++ +
Sbjct: 71 KCDRAF 76
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 747 YVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ- 803
+ C+Y CGK+Y H+ H K Y C F LTRH + H
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Query: 804 -YRCTRCNKTFKQNTSFIRHSLKHF 827
++C +C++ F ++ H +HF
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 146 YACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFNLMKRHNLCDHQDVR 201
+ C Y CG + S AH HT KPY C CG F + + RH H R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHR 65
Query: 202 NYLCNFCNKTYKDRKTLDNHILGH 225
+ C C++ + L H+ H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 229 KPYKQLSNLQSHIRISHT-GERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNV--C 285
K ++ S ++ H+ HT G R C C AF E L+ H +H G+ K F C C
Sbjct: 15 KMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGE-KPFQCTFEGC 70
Query: 286 NYSSSLKWNLIQHYRIHTDEKPFNCSL--CEKQFRQKIHVKNHL 327
SL +NL H RIHT ++P+ C C K+F Q ++K+H+
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCL- 177
P C R + HL H + + C CG AF S HQ +HT KP+ C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF 67
Query: 178 -TCGQSFR-TFNLMKRHNLCDHQDVRNYLCNF--CNKTYKDRKTLDNHILGHVDIK 229
CG+ F FNL R ++ H R Y+C F CNK + L +HIL H K
Sbjct: 68 EGCGKRFSLDFNL--RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 16/108 (14%)
Query: 179 CGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPY------- 231
C + FR + M++H L H R ++C C K + + L H L H KP+
Sbjct: 13 CTKMFRDNSAMRKH-LHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 232 -KQLS---NLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLH 273
K+ S NL++H+RI HTG+RP+ C + CN F + +L++H+ H
Sbjct: 71 GKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 44 MKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHKNT 101
M+ + + C + C + F D + H+ HT +++ C +C K + K +RH+
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHL---HTHGPRVHV-CAECGKAFVESSKLKRHQLV 56
Query: 102 HVTENSEYPCIYCRNIYPCSF--CAYRGRYRYHFKAHLRIHLNIKPYACKY--CGNAFAH 157
H E + C+F C R ++ + H+RIH +PY C + C FA
Sbjct: 57 HTGEKP----------FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106
Query: 158 KSSRDAHQNIHTDLK 172
++ +H H K
Sbjct: 107 STNLKSHILTHAKAK 121
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 367 LCWKCGFKTSVLNELKAHIKSHHFPKQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQ 424
+C +CG ++LK H + H ++P C CG F ++N H+R HTG +PY
Sbjct: 36 VCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 425 C--KTCNASYASMRVLQHHEITHSKT 448
C CN +A L+ H +TH+K
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 15 SQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQ-FFLDLGRLNAHIRQR 71
+ R + C C K F + + LKRH +H +P +C + CG+ F LD L H+R
Sbjct: 29 THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF-NLRTHVRI- 86
Query: 72 HTSNKKIYYKCDKCNKTYKSKYKFERHKNTHV 103
HT ++ D CNK + + H TH
Sbjct: 87 HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT--KCNYSARVLSNKLAHE 647
H+ HG R C C F + S L H+ +H KP++CT C + N H
Sbjct: 26 HLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84
Query: 648 RIYHQDHVFKCHINNC 663
RI+ D + C + C
Sbjct: 85 RIHTGDRPYVCPFDGC 100
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 400 CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCI--NCG 457
C F+ N H+ H G + + C C ++ L+ H++ H+ F C CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 458 KYFTKLEYMIKHMKRHFNTNKPVC--EICSQTMAHNQVLQRHMTLH 501
K F+ + H++ H VC + C++ A + L+ H+ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 747 YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ--Y 804
+VC CGK++++ H VH K + C F + L H++ H Y
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 805 RCT--RCNKTFKQNTSFIRHSLKHFNSSNS 832
C CNK F Q+T+ H L H + N+
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 38/145 (26%)
Query: 484 CSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCG 543
C++ N +++H+ H + H C C +F +L HQ+ G++ + CG
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPR-VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 544 IINLKRKYHVYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCL 603
++F D N H+RIH DRP+ C
Sbjct: 72 ----------------------------KRFSLDF-------NLRTHVRIHTGDRPYVCP 96
Query: 604 L--CNNTFAQLSTLLNHERIHDNHK 626
CN FAQ + L +H H K
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 404 FKTNYNYFVHMRRHTGFKPYQC--KTCNASYASMRVLQHHEITHSKTLKFPC--INCGKY 459
FK Y VHMRRHTG KP++C + C SY+ + L+ H +H+ + C C K
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 460 FTKLEYMIKHMKRHFNTNKP-VCEI--CSQTMAHNQVLQRHM-TLH 501
F+ KH R + KP VC++ C++ L++H+ T+H
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 50 RCGYCGQFFLDLGRLNAHIRQRHTSNKKI-----YYKCDKCNKTYKSKYKFERHKNTHVT 104
R C Q F +L HI H ++ + C + + +K++Y H H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 105 ENSEYPCIYCRNIYPCSFCAYRGRYR--YHFKAHLRIHLNIKPYACKY--CGNAFAHKSS 160
E + C+F R Y + K HLR H KPY C++ C AF++ S
Sbjct: 65 EKP----------HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114
Query: 161 RDAHQN-IHTDLKPYLCLTCG 180
R HQN H++ KPY+C G
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPG 135
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 227 DIKPYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCN- 283
+++P+K L H+R HTGE+P +C + C ++ +L+TH+ H G+ K + C
Sbjct: 45 ELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE-KPYMCEH 102
Query: 284 -VCNYSSSLKWNLIQHY-RIHTDEKPFNCSL--CEKQFRQKIHVKNHLRIIHN 332
C+ + S + +H R H++EKP+ C L C K++ ++ H++ +H
Sbjct: 103 EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 40/181 (22%)
Query: 510 NRCNASFSSMVQLSCHQIRA---HGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRTL 566
+ C+ F S QL H I + HG++K+ F+CH G +R L
Sbjct: 7 DGCSQEFDSQEQL-VHHINSEHIHGERKE-FVCHWGGC------------------SREL 46
Query: 567 PPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDN 624
P FK YM +HMR H ++P C C ++++L L H R H
Sbjct: 47 RP-----FK--AQYM-----LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 625 HKPYKC--TKCNYSARVLSNKLAHE-RIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFH 681
KPY C C+ + S++ H+ R + + + C + C S LR+H K H
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Query: 682 S 682
Sbjct: 155 G 155
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 593 IHGKDRPFSCLLCN-----NTFAQLSTLLNHERIHDNHKPYKCT--KCNYSARVLSNKLA 645
IHG+ + F C F L+ H R H KP+KCT C S L N
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 646 HERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLN 705
H R + + + C C + S +H+ HSNE K C + + S+L
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 706 AH 707
H
Sbjct: 148 KH 149
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 165 QNIHTDLKPYLC--LTCGQSFRTFNL--MKRHNLCDHQDVRNYLCNF--CNKTYKDRKTL 218
++IH + K ++C C + R F M ++ H + + C F C K+Y + L
Sbjct: 26 EHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENL 85
Query: 219 DNHILGHVDIKPY--------KQLSNLQS---HIRISHTGERPFQCKY--CNYAFKEKHH 265
H+ H KPY K SN H +H+ E+P+ CK C + +
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSS 145
Query: 266 LETHV 270
L HV
Sbjct: 146 LRKHV 150
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 26 CSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSNKKIYYKCD 83
C K +S+L LK H+ H +P C + C + F + H + H++ K K
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 84 KCNKTYKSKYKFERHKNT 101
C K Y +H T
Sbjct: 135 GCTKRYTDPSSLRKHVKT 152
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIY 650
++P+ C+ C F++ S L+ H+R+H KPYKC +C + S + H+RI+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDV 200
KPY C CG AF+ S HQ +HT KPY CL CG++F + L +HQ +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS-----QNSGLINHQRI 64
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
K + C C + S L+QH R+HT EKP+ C C K F Q + NH RI
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDN 624
H R+H ++P+ CL C F+Q S L+NH+RIH +
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 421 KPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKP 479
KPY C C +++ +L H+ H+ + C+ CGK F++ +I H + H T+ P
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH--TSGP 69
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
++P C CG F + H R HTG KPY+C C +++ L +H+ H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTD 170
H R+H KPY C CG AF+ S HQ IHT
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 780 CHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKHFNSSNSD 833
C +C F L +H + H + Y+C C K F QN+ I H H + +S
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
E+ Y C C K FS+ + L +H +H +P +C CG+ F L H R HTS
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHTSG 68
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
P C C ++F+ S L H H + + C C F+ S LI H+RI
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFT 503
+ C+ CGK F++ +++H + H C C + + N L H +H +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
K + + S L H R+ HTGE+P++C C AF + L H +H S
Sbjct: 22 KAFSRSSILVQHQRV-HTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 715 RRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKS 774
+ + C C F+ S L++H+R+ E Y C CGK++ NH +H S
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTG--EKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKP 307
++P++C C +F+ K +L +H +H G+ K + CN+C + NL H RIH+ EKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGE-KPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
K + C+ C S K NL H +HT EKP+ C++C QF + ++K H RI
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSF-RTFNL 188
KPY C C +F +K + +H+ +HT KPY C CG F R NL
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
Y C C RY+ + +H +H KPY C CG F ++ H IH+ KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQD 653
D+P+ C C +F L +H+ +H KPY+C C +N H RI+ +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 235 SNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGK 276
NL SH + HTGE+P++C C F +L+TH +H G+
Sbjct: 31 GNLASHKTV-HTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
K N H +H ++P+ C +C F + + L H RIH KP
Sbjct: 30 KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRI 139
YKCD+C +++ K HK H E Y C+ C + + K H RI
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP----------YRCNICGAQFNRPANLKTHTRI 67
Query: 140 HLNIKP 145
H KP
Sbjct: 68 HSGEKP 73
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 393 QPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+P C C +F+ N H HTG KPY+C C A + L+ H HS
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
P KC C SF NL +H H + + C C F +NL H RI
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIR 69
++ Y C C F L H +H +P RC CG F L H R
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 421 KPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRH 473
KPY+C C AS+ L H+ H+ + C CG F + + H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 21/79 (26%)
Query: 172 KPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPY 231
KPY C C SFR + H H + Y CN C +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQ-------------------F 55
Query: 232 KQLSNLQSHIRISHTGERP 250
+ +NL++H RI H+GE+P
Sbjct: 56 NRPANLKTHTRI-HSGEKP 73
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERK 773
+ C C +F Y NL H+ + E Y CN CG + + H +H K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTG--EKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 626 KPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNE 684
KPYKC +C S R N +H+ ++ + ++C+I F+ + L+ H +I HS E
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRP--ANLKTHTRI-HSGE 71
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 779 RCHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
+C +C A+FR K L H H + YRC C F + + H+ H
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFP--CI 454
C +CG F+ Y+ H H+G KPY C C + + +H +H ++ P C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 455 NCGKYFTKLEYMIKHMKR 472
+CGK F++ +++ H+K+
Sbjct: 70 SCGKGFSRPDHLNGHIKQ 87
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
+G C+ C F++ +HL H H G+ K ++C VC K + H R H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGE-KPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 306 --KPFNCSLCEKQFRQKIHVKNHLRIIHN 332
KP+ C C K F + H+ H++ +H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 120 CSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTD--LKPYLCL 177
C C R YH H H KPY+C CG F K H H KPY+C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 178 TCGQSFRTFNLMKRH 192
+CG+ F + + H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 16/89 (17%)
Query: 82 CDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRIHL 141
C+ C K ++ Y RHK +H E Y C C R + + H+R H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKP----------YSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 142 NI--KPYACKYCGNAFAHKSSRDAHQNIH 168
KPY C+ CG F SR H N H
Sbjct: 60 GSVGKPYICQSCGKGF----SRPDHLNGH 84
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 147 ACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLC-DHQDVRNYLC 205
AC+ CG F + H+ H+ KPY C CG F+ + M H D + Y+C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 206 NFCNKTYKDRKTLDNHI 222
C K + L+ HI
Sbjct: 69 QSCGKGFSRPDHLNGHI 85
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 682 SNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHS 741
+ + C+IC + F +LN H H + +SC C L F + H R H
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHD 59
Query: 742 QHEGK-YVCNYCGKSYIDKRDYTNHV-SVHMERKSG 775
GK Y+C CGK + H+ VH SG
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 16 QDERTYHCPLCSKQFSKLTTLKRHVGIHMKT--QPVRCGYCGQFFLDLGRLNAHIRQRHT 73
E+ Y CP+C +F + + HV H + +P C CG+ F LN HI+Q H+
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Query: 74 S 74
Sbjct: 91 G 91
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 15 SQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTS 74
S C +C K F + L RH H +P C CG F R++ H+R S
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 75 NKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYP 110
K Y C C K + H N H+ + P
Sbjct: 62 VGKPYI-CQSCGKGFSR----PDHLNGHIKQVHSGP 92
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 361 SNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTG- 419
S +S + C CG + L H K H ++P C VCG FK H+R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 420 -FKPYQCKTCNASYASMRVLQHH 441
KPY C++C ++ L H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGH 84
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 418 TGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNT- 476
+G C+ C + + L H+++HS + C CG F + + M H++ H +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 477 NKP-VCEICSQTMAHNQVLQRHM 498
KP +C+ C + + L H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 277 TKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQK----IHVKNHLRIIHN 332
+ C +C ++L +H H+ EKP++C +C +F++K HV++H +
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 333 MNFCDHCFKFVGPEQELN 350
C C K LN
Sbjct: 65 PYICQSCGKGFSRPDHLN 82
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 587 FNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDN--HKPYKCTKCN 634
N H H ++P+SC +C F + + H R HD KPY C C
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG 72
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 475 NTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAH-GKQ 533
++ CEIC + L RH H + + C C F ++S H +R+H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSV 62
Query: 534 KQRFMCHRCG 543
+ ++C CG
Sbjct: 63 GKPYICQSCG 72
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 398 AVCGDTFKTNYNYFVHMRRHTGFKPYQCK--TCNASYASMRVLQHHEITHSKTLKFPCIN 455
A CG + N+ H+ +HTG KP+ CK C + S+ L H +TH+ F C +
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 456 CGKYFTKLEYMIK-HMKRHFNT--NKPVC------EICSQTMAHNQVLQRHMTLHFTQNK 506
G L + K +MK+HFN N +C E C + + L+ H H Q
Sbjct: 78 DG---CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP 134
Query: 507 HPC--NRCNASFSSMVQLSCHQ 526
+ C C+ FS +L H+
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHE 156
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 681 HSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSC--TNCSLNFTYLSNLIRHRRI 738
H+ E P K + C + F +L H H + F+C C L FT +N+ +H
Sbjct: 37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 96
Query: 739 KHSQHEGKYVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRH 796
H+ YVC++ CGK++ H H ++ Y C+ F + L RH
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRH 155
Query: 797 MKTHLIQYRCTR---CNKTFKQNTSFIRH 822
K H Y C + C+ K T +++H
Sbjct: 156 EKVH-AGYPCKKDDSCSFVGKTWTLYLKH 183
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 54 CGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIY 113
CG + +L AH+ +HT K K + C K + S + RH TH E +
Sbjct: 20 CGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN----FT 74
Query: 114 CRNIYPCSFCAYRGRYRYHFKAHLRIHLNIK--PYACKY--CGNAFAHKSSRDAHQNIHT 169
C + C R + + K H NIK Y C + CG AF + HQ HT
Sbjct: 75 CDS----DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 170 DLKPYLCL--TCGQSFRTFNLMKRHNL--CDHQDVRNYLCNFCNKTY 212
PY C C + F + +KRH + ++ C+F KT+
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNV--CN 286
Y + LQ+H+ HTGE+PF CK C F HHL H H G+ K+F C+ C+
Sbjct: 24 YNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-KNFTCDSDGCD 81
Query: 287 YSSSLKWNLIQHY 299
+ K N+ +H+
Sbjct: 82 LRFTTKANMKKHF 94
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 110 PCIYCRNIYPCSFCAYRGRYRYHFK--AHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQ 165
P +Y R Y CSF Y ++K AHL H KP+ CK C F H
Sbjct: 7 PVVYKR--YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS 64
Query: 166 NIHTDLKPYLCLT--CGQSFRTFNLMKRH-NLCDHQDVRNYLCNF--CNKTYKDRKTLDN 220
HT K + C + C F T MK+H N + + Y+C+F C K +K L
Sbjct: 65 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 221 HILGHVDIKPYK 232
H H PY+
Sbjct: 125 HQFSHTQQLPYE 136
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 484 CSQTMAHNQVLQRHMTLHFTQNKHPCNR--CNASFSSMVQLSCHQIRAHGKQKQRFMCHR 541
C N LQ H+ H + PC C F+S+ L+ H + G++ F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK--NFTCDS 77
Query: 542 CGI-------INLKRKYHVYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIH 594
G N+K+ ++ +H C Y + KH+ +H H
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN--------QLKVHQFSH 129
Query: 595 GKDRPFSCL--LCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQ 652
+ P+ C C+ F+ S L HE++H + K C++ + + L H HQ
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Query: 653 D 653
D
Sbjct: 190 D 190
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 62/180 (34%), Gaps = 46/180 (25%)
Query: 285 CNYSSSLKWNLIQHYRIHTDEKPFNC--SLCEKQFRQKIHVKNH-LRIIHNMNFCDHCFK 341
C + + W L H HT EKPF C CEK F H+ H L NF
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF------ 73
Query: 342 FVGPEQELNIFRHCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAV-- 399
CD C + + +K H H K IC
Sbjct: 74 ---------------TCDSDG--------CDLRFTTKANMKKHFNRFHNIK---ICVYVC 107
Query: 400 ----CGDTFKTNYNYFVHMRRHTGFKPYQC--KTCNASYASMRVLQHHEITHSKTLKFPC 453
CG FK + VH HT PY+C + C+ ++ L+ HE H+ +PC
Sbjct: 108 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA---GYPC 164
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 11/133 (8%)
Query: 587 FNIHMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCTK--CNYSARVLSN 642
H+ H ++PF C C F L L H H K + C C+ +N
Sbjct: 30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 89
Query: 643 KLAHERIYHQDH--VFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKC--KICNQSF 698
H +H V+ CH NC + K ++ L+ H+ S+ P +C + C++ F
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ---FSHTQQLPYECPHEGCDKRF 146
Query: 699 ALFSNLNAHYNKH 711
+L S L H H
Sbjct: 147 SLPSRLKRHEKVH 159
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 90 KSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACK 149
+ K K + H V Y CI C+ Y C + H IH K Y C+
Sbjct: 4 RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTS---------LRRHFNIHSWEKKYPCR 54
Query: 150 YCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
YC F R H+ HT + Y CL CG+SF + M H
Sbjct: 55 YCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 691 CKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCN 750
C +C +S+ ++L H+N H +++ C C F +H H E +Y C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE--IHHTGERRYQCL 82
Query: 751 YCGKSYIDKRDYTNHV-SVHMERKSGYTQ--RCHKCNA 785
CGKS+I+ + ++H+ SVH + SG ++ R H C +
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRS 120
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 396 ICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCIN 455
IC VC ++ + H H+ K Y C+ C + HEI H+ ++ C+
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 456 CGKYFTKLEYMIKHMK 471
CGK F ++M H+K
Sbjct: 84 CGKSFINYQFMSSHIK 99
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 423 YQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCE 482
Y C C SY + L+ H HS K+PC C K F EY KH H + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 483 ICSQTMAHNQVLQRHMTLHFTQNK---------HPC 509
C ++ + Q + H+ +Q+ HPC
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPC 118
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 29/135 (21%)
Query: 158 KSSRDAHQNIHTDLKPY-LCLTCGQSFRTFNLMKRH-NLCDHQDVRNYLCNFCNKTYKDR 215
K D H + D + Y +C+ C +S+ ++RH N+ H + Y C +C K +
Sbjct: 6 KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNI--HSWEKKYPCRYCEKVFP-- 61
Query: 216 KTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYC-----NYAFKEKHHLETHV 270
L+ ++ I HTGER +QC C NY F H H
Sbjct: 62 ------------------LAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHS 103
Query: 271 NLHLGKTKSFNCNVC 285
G +K + + C
Sbjct: 104 QDPSGDSKLYRLHPC 118
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 17 DERTYH-CPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
D R Y+ C +C + + LT+L+RH IH + C YC + F L HT
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF-PLAEYRTKHEIHHTGE 76
Query: 76 KKIYYKCDKCNKTY 89
++ Y+C C K++
Sbjct: 77 RR--YQCLACGKSF 88
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 480 VCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMC 539
+C +C ++ L+RH +H + K+PC C F + H+I H ++R+ C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI--HHTGERRYQC 81
Query: 540 HRCG 543
CG
Sbjct: 82 LACG 85
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLC 205
Y C C ++ +S H NIH+ K Y C C + F +H + H R Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI-HHTGERRYQC 81
Query: 206 NFCNKTYKDRKTLDNHI 222
C K++ + + + +HI
Sbjct: 82 LACGKSFINYQFMSSHI 98
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 663 CIFSTKFYSC---LRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSC 719
CI + Y C LRRH I HS E P C+ C + F L H H RR+ C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNI-HSWEKKYP--CRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 720 TNCSLNFTYLSNLIRHRRIKHSQ 742
C +F + H + HSQ
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQ 104
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 737 RIKHSQH-----EGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRI 789
++KH H +G+ Y+C C +SY+ H ++H K C C F +
Sbjct: 6 KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK---YPCRYCEKVFPL 62
Query: 790 KKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKHFNSSNSDN 834
++ T+H H + Y+C C K+F N F+ +K +S +
Sbjct: 63 AEYRTKHEIHHTGERRYQCLACGKSF-INYQFMSSHIKSVHSQDPSG 108
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 257 NYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQ 316
N K KH + H L + + C VC S +L +H+ IH+ EK + C CEK
Sbjct: 2 NKRMKVKH--DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKV 59
Query: 317 F 317
F
Sbjct: 60 F 60
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 238 QSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQ 297
H + G + C C ++ L H N+H K + C C L +
Sbjct: 10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIH-SWEKKYPCRYCEKVFPLAEYRTK 68
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFC-DHCFKFVGPEQELNIFRHCE 356
H HT E+ + C C K F + +H++ +H+ + D + P + L I ++
Sbjct: 69 HEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAY 128
Query: 357 VCDKS 361
+ D+S
Sbjct: 129 LSDRS 133
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 228 IKPYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVC 285
K Y + S+L++H+R +HTGE+P++C + C++ F L H H G K F C VC
Sbjct: 24 TKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG-AKPFQCGVC 81
Query: 286 NYSSSLKWNLIQHYRIH 302
N S S +L H + H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 412 VHMRRHTGFKPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKH 469
H+R HTG KPY+C + C+ +A L H H+ F C C + F++ +++ H
Sbjct: 35 AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Query: 470 MKRHFN 475
MKRH N
Sbjct: 95 MKRHQN 100
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 104 TENSEYPCIYCRNIYPCSFCAYRGRY--RYHFKAHLRIHLNIKPYACKY--CGNAFAHKS 159
+ S P + R I+ C + Y H KAHLR H KPY C + C FA
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 160 SRDAHQNIHTDLKPYLCLTCGQSF-RTFNL---MKRHN 193
H HT KP+ C C +SF R+ +L MKRH
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 196 DHQDVRNYLCNF--CNKTYKDRKTLDNHILGHVDIKPYK-----------QLSNLQSHIR 242
D + R + C++ C K Y L H+ H KPYK + L H R
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 243 ISHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
HTG +PFQC CN +F HL H+ H
Sbjct: 69 -KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 579 VYMDSKTNFNIHMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYS 636
VY S ++ H+R H ++P+ C C+ FA+ L H R H KP++C CN S
Sbjct: 26 VYTKS-SHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS 84
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 344 GPEQELNIFRHCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAV--CG 401
GP+ E +C+ Y C K K+S LKAH+++H ++P C C
Sbjct: 7 GPDLEKRRIHYCD--------YPGCTKVYTKSS---HLKAHLRTH-TGEKPYKCTWEGCD 54
Query: 402 DTFKTNYNYFVHMRRHTGFKPYQCKTCNASYA 433
F + H R+HTG KP+QC CN S++
Sbjct: 55 WRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 455 NCGKYFTKLEYMIKHMKRHFNTNKPVC--EICSQTMAHNQVLQRHMTLHFTQNKHPCNRC 512
C K +TK ++ H++ H C E C A + L RH H C C
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 513 NASFSSMVQLSCHQIR 528
N SFS L+ H R
Sbjct: 82 NRSFSRSDHLALHMKR 97
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 24 PLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSNKKIYYK 81
P C+K ++K + LK H+ H +P +C + C F L H R +HT K ++
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKP--FQ 77
Query: 82 CDKCNKTY 89
C CN+++
Sbjct: 78 CGVCNRSF 85
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 694 CNQSFALFSNLNAHYNKHLKVRRFSCT--NCSLNFTYLSNLIRHRRIKHSQHEGKYVCNY 751
C + + S+L AH H + + CT C F L RH R KH+ + + C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAK-PFQCGV 80
Query: 752 CGKSYIDKRDYTNHVSVHMER 772
C +S+ ++H+++HM+R
Sbjct: 81 CNRSF----SRSDHLALHMKR 97
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 688 PAKC--KICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRH 735
P KC + C+ FA L HY KH + F C C+ +F+ +L H
Sbjct: 45 PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 592 RIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT--KCNYSARVLSNKLAHERI 649
RIH D P C + + S L H R H KPYKCT C++ H R
Sbjct: 14 RIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 650 YHQDHVFKCHINNCIFS 666
+ F+C + N FS
Sbjct: 70 HTGAKPFQCGVCNRSFS 86
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQ 70
E+ Y C C +F++ L RH H +P +CG C + F L H+++
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 279 SFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCD 337
SF C VC + + + +L +HYR HT+EKP+ C LC + F ++ + H + IH+ N +
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 480 VCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAH 530
VCE+C++ A + L+RH H + +PC CN +F+ L H + H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 691 CKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK 746
C++C ++FA +L HY H + + C C+ FT LIRH + HS + G+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
+ C+ C AFA + H HT+ KPY C C ++F +L+ RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 20 TYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
++ C +C++ F++ LKRH H +P CG C + F L H ++ H+ N
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 600 FSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYS 636
F C +C FA+ L H R H N KPY C CN +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRA 39
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 423 YQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKR 472
+ C+ C ++A L+ H +H+ +PC C + FT+ + +I+H ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 396 ICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVL-QHHEITHSKTL 449
+C VC F + H R HT KPY C CN ++ +L +H + HS L
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAH-QNIHTD 170
+ C C + H K H R H N KPY C C AF + H Q IH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 780 CHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLK 825
C C F ++ L RH ++H + Y C CN+ F + IRH+ K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNH-ERIHDN 624
H R H ++P+ C LCN F + L+ H ++IH
Sbjct: 21 HYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 226 VDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVN-LHLG 275
V + + + +L+ H R SHT E+P+ C CN AF + L H +H G
Sbjct: 7 VCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHM 498
F C C + F + E++ +H + H N C +C++ +L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 398 AVCGDTFKTNYNYFVHMRRHTGFKPYQCK--TCNASYASMRVLQHHEITHSKTLKFPCIN 455
A CG + N+ H+ +HTG KP+ CK C + S+ L H +TH+ F C +
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
Query: 456 CGKYFTKLEYMIK-HMKRHFN 475
G L + K +MK+HFN
Sbjct: 69 DG---CDLRFTTKANMKKHFN 86
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 230 PYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNV--C 285
Y + LQ+H+ HTGE+PF CK C F HHL H H G+ K+F C+ C
Sbjct: 14 AYNKNWKLQAHLS-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-KNFTCDSDGC 71
Query: 286 NYSSSLKWNLIQHY 299
+ + K N+ +H+
Sbjct: 72 DLRFTTKANMKKHF 85
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 144 KPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFNLMKRHNLCDHQD 199
K Y C + CG A+ AH + HT KP+ C C + F + + + RH+L H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTG 60
Query: 200 VRNYLCN 206
+N+ C+
Sbjct: 61 EKNFTCD 67
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 285 CNYSSSLKWNLIQHYRIHTDEKPFNC--SLCEKQFRQKIHVKNH 326
C + + W L H HT EKPF C CEK F H+ H
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 118 YPCSFCAYRGRYRYHFK--AHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKP 173
Y CSF Y ++K AHL H KP+ CK C F H HT K
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 174 YLCLT--CGQSFRTFNLMKRH 192
+ C + C F T MK+H
Sbjct: 64 FTCDSDGCDLRFTTKANMKKH 84
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 428 CNASYASMRVLQHHEITHSKTLKFPC--INCGKYFTKLEYMIKHMKRHFNTNKPVCE 482
C A+Y LQ H H+ FPC C K FT L ++ +H H C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 681 HSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSC--TNCSLNFTYLSNLIRH 735
H+ E P K + C + F +L H H + F+C C L FT +N+ +H
Sbjct: 28 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 20/129 (15%)
Query: 54 CGQFFLDLGRLNAHIRQRHTSNKK------IYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
C + F + L H+ H + + +C + K++K+KYK H H E
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 108 EYPCIY--CRNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDA 163
+PC + C I+ S + K H R H KP+ C++ C FA+ S R
Sbjct: 91 -FPCPFPGCGKIFARS---------ENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 164 HQNIHTDLK 172
H ++HT K
Sbjct: 141 HMHVHTSDK 149
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 254 KYCNYAFKEKHHLETHVNL-HLGKTKSFN-------CNVCNYSSSLKWNLIQHYRIHTDE 305
K C+ F H L THV + H+G + N C S K+ L+ H R+HT E
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 306 KPFNCSL--CEKQFRQKIHVKNHLRI 329
KPF C C K F + ++K H R
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 231 YKQLSNLQSHIRISHTGERPFQ---------CKYCNYAFKEKHHLETHVNLHLGKTKSFN 281
+ + L +H+ + H G P Q C +FK K+ L H+ +H G+ K F
Sbjct: 35 FSTMHELVTHVTMEHVG-GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE-KPFP 92
Query: 282 CNV--CNYSSSLKWNLIQHYRIHTDEKPFNCSL--CEKQFRQKIHVKNHLRI 329
C C + NL H R HT EKPF C C+++F K H+ +
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 36/143 (25%)
Query: 376 SVLNELKAHIKSHHF--PKQP------SICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
S ++EL H+ H P+Q C G +FK Y H+R HTG KP+ C
Sbjct: 36 STMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPC-- 93
Query: 428 CNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEI--CS 485
P CGK F + E + H + H CE C
Sbjct: 94 ------------------------PFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCD 129
Query: 486 QTMAHNQVLQRHMTLHFTQNKHP 508
+ A++ ++HM +H + P
Sbjct: 130 RRFANSSDRKKHMHVHTSDKSGP 152
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 128 RYRYHFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSF 183
+ +Y H+R+H KP+ C + CG FA + H+ HT KP+ C C + F
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Query: 184 RTFNLMKRH 192
+ K+H
Sbjct: 133 ANSSDRKKH 141
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 590 HMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKC 630
H+R+H ++PF C C FA+ L H+R H KP+KC
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
Query: 178 TCGQSFRTFNLMKRHNLCDH---QDVRNYLCNFC-----NKTYKDRKTLDNHILGHVDIK 229
+C ++F T + + H +H + N++C + K++K + L NHI H K
Sbjct: 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 230 PYK-----------QLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLH 273
P+ + NL+ H R +HTGE+PF+C++ C+ F + H+++H
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 344 GPEQELNIFRHCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAV--CG 401
GPEQ ++ + E C + S+ +K ++N ++ H FP C CG
Sbjct: 52 GPEQNNHVC-YWEECPREGKSFKAKYK------LVNHIRVHTGEKPFP-----CPFPGCG 99
Query: 402 DTFKTNYNYFVHMRRHTGFKPYQC--KTCNASYASMRVLQHHEITHSKTLKFP 452
F + N +H R HTG KP++C + C+ +A+ + H H+ P
Sbjct: 100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP 152
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 23 CPLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSNKKIYY 80
CP K F L H+ +H +P C + CG+ F L H R HT K
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKC 123
Query: 81 KCDKCNKTYKSKYKFERHKNTHVTENS 107
+ + C++ + + ++H + H ++ S
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKS 150
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 602 CLLCNNTFAQLSTLLNHERIHDNHKPYKCT--KCNYSARVLSNKLAHERIYHQDHVFKCH 659
C +F L+NH R+H KP+ C C N H+R + + FKC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 660 INNC 663
C
Sbjct: 125 FEGC 128
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 262 EKHHLETHVNLHLGKTKSFNCNV--CNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQ 319
E H + +N + K + + C V C+ S L +H RIHT +KPF C +C + F +
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Query: 320 KIHVKNHLR 328
H+ H+R
Sbjct: 62 SDHLTTHIR 70
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
+ + L HIRI HTG++PFQC+ C F HL TH+ H
Sbjct: 31 FSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 19 RTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIR 69
R Y CP+ C ++FS+ L RH+ IH +P +C C + F L HIR
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 249 RPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
RP+ C C+ F L H+ +H G+ K F C +C + S +L H R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 593 IHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
+ K RP++C + C+ F++ L H RIH KP++C C
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 55
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 393 QPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+P C V C F + H+R HTG KP+QC+ C +++ L H TH+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 143 IKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSF 183
++PYAC C F+ H IHT KP+ C C ++F
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
H+RIH +PF C +C F++ L H R H
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 119 PCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHT 169
P C R H+RIH KP+ C+ C F+ H HT
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSK 447
C+ CG F++NY +H+R HTG KPY+C+ C + A L++H H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 120 CSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
CS+C R Y+ HLR H KPY C++C A A K+S H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 237 LQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
L H+R +HTGE+P++C++C YA +K L H+ H
Sbjct: 20 LNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 277 TKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHL 327
+ S C+ C + L H R HT EKP+ C CE QK ++ HL
Sbjct: 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHL 52
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 247 GERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIH 302
G +C YC F+ ++L H+ H G+ K + C C Y+++ K +L H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGE-KPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 580 YMDSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
+ S NIH+R H ++P+ C C AQ ++L H H
Sbjct: 13 FFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 453 CINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLH 501
C CGK+F Y+ H++ H CE C A L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 51 CGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSK----YKFERH 98
C YCG+FF LN H+R HT K YKC+ C K Y ERH
Sbjct: 7 CSYCGKFFRSNYYLNIHLRT-HTGEKP--YKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ + C+ C S S +L +H R HT EKP+ C C K F Q+ H+ H R+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDV 200
Y C CG +F+H S H+ HT KPY C CG++F ++R +L H V
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF-----IQRSHLIGHHRV 68
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIY 650
R + C C +F+ S L H R H KPYKC +C + S+ + H R++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 715 RRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHM 770
RR+ C C +F++ S+L +HRR E Y C+ CGK++I + H VH
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTG--EKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 20/82 (24%)
Query: 198 QDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCN 257
++ R Y C+ C K++ L H R +HTGE+P++C C
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKH--------------------RRTHTGEKPYKCDECG 53
Query: 258 YAFKEKHHLETHVNLHLGKTKS 279
AF ++ HL H +H G S
Sbjct: 54 KAFIQRSHLIGHHRVHTGSGPS 75
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 23/59 (38%)
Query: 115 RNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
R Y C C + H R H KPY C CG AF +S H +HT P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 585 TNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++ + H R H ++P+ C C F Q S L+ H R+H P
Sbjct: 32 SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 14 ESQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIR 69
+ ++ R Y C C K FS + L +H H +P +C CG+ F+ L H R
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 690 KCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
KC C +SF+ S+L+ H H + + C C F S+LI H R+
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 423 YQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTN 477
Y+C C S++ L H TH+ + C CGK F + ++I H + H +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 249 RPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKP 307
R ++C C +F L H H G+ K + C+ C + + +LI H+R+HT P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGE-KPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMR-VLQHHEI 443
C CG +F + + H R HTG KPY+C C ++ ++ HH +
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 779 RCHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKHFNSSNSDN 834
+C +C +F L++H +TH + Y+C C K F Q + I H H S S
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG 77
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCD 337
K F C +C + S +L H R HT EKPF C +C ++F + K H I H + +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
+ C C H H+R H KP+AC CG FA R H++I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 249 RPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCN 286
+PFQC+ C F HL TH+ H G+ K F C++C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICG 38
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDH 197
+KP+ C+ C F+ H HT KP+ C CG+ F + KRH H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKH 740
P +C+IC ++F+ +L H H + F+C C F RHR I+H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 393 QPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYA-SMRVLQHHEITH 445
+P C +C F + + H+R HTG KP+ C C +A S +H +I H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYH 651
+PF C +C F++ L H R H KP+ C C + H I H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 420 FKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKH 469
KP+QC+ C +++ L H TH+ F C CG+ F + + +H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 228 IKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
++ + + +L +HIR +HTGE+PF C C F + H ++
Sbjct: 10 MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 19 RTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFF 58
+ + C +C + FS+ L H+ H +P C CG+ F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCF 340
R HT EKP+ CS C+K FRQK + H + H+ NF F
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAF 48
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTD----LKPYLCLTCGQSFRTFNLMKRH 192
R H KPYAC +C F K D H + D ++C CG++F N M RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 415 RRHTGFKPYQCKTCNASYASMRVLQHH----EITHSKTLKFPCINCGKYFTKLEYMIKHM 470
R HTG KPY C C+ ++ ++L H + F C CGK FT+ M +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETH 269
+HTGE+P+ C +C+ F++K L+ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMH 34
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 159 SSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQD---VRNYLCNFCNKTYKDR 215
S + HT KPY C C ++FR L+ H H ++C+ C KT+ R
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 216 KTLDNHI 222
T+ H
Sbjct: 61 NTMARHA 67
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 780 CHKCNATFRIKKFLTRHMKTH------LIQYRCTRCNKTFKQNTSFIRHS 823
C C+ TFR K+ L H K + + C++C KTF + + RH+
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 744 EGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQR-CHKCNATFRIKKFLTRHMKTH 800
E + CN+CGK+Y D + H H+ GY R C +C FR + + RH+K H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHL----GYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 20/77 (25%)
Query: 201 RNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAF 260
R + CNFC KTY+D L H R +H G RP C C F
Sbjct: 3 RPFFCNFCGKTYRDASGLSRH--------------------RRAHLGYRPRSCPECGKCF 42
Query: 261 KEKHHLETHVNLHLGKT 277
+++ + H+ +H K
Sbjct: 43 RDQSEVNRHLKVHQNKP 59
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIR 69
ER + C C K + + L RH H+ +P C CG+ F D +N H++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
+P+ C +CG + S H+ H +P C CG+ FR + + RH
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHN 332
+ F CN C + L +H R H +P +C C K FR + V HL++ N
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
+RPF C C T+ S L H R H ++P C +C
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECG 39
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
++P C CG T++ H R H G++P C C + + H H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 120 CSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTD 170
C+FC R H R HL +P +C CG F +S + H +H +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 172 KPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGH 225
+P+ C CG+++R + + RH H R C C K ++D+ ++ H+ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 421 KPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPV 480
+P+ C C +Y L H H C CGK F + +H+K H NKP
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH--QNKPA 60
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 715 RRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG--KYVCNYCGKSYIDKRDYTNHVSVHMER 772
R F C C + S L RHRR H G C CGK + D+ + H+ VH +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRA----HLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Query: 773 KS 774
+
Sbjct: 59 PA 60
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 780 CHKCNATFRIKKFLTRHMKTHLIQYR---CTRCNKTFKQNTSFIRHSLKHFN 828
C+ C T+R L+RH + HL YR C C K F+ + RH H N
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHL-GYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 685 SYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
S P C C +++ S L+ H HL R SC C F S + RH ++
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF+H+ S HQ IH+ KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C +C F+ +L H+RIH KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C AF + L H +H GK S
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P C+VCG F + VH R H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 232 KQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHV 270
K+ S L+ HIR +HT RP+ C YCN++FK K +L H+
Sbjct: 12 KKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 174 YLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
Y+C CG + +++K+H + H DVR Y C +CN ++K + L H+
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAH 164
Y C C R + K H+R H +++PY C YC +F K + H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 21 YHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNK 76
Y C C + K + LK+H+ H +P C YC F G L H++ + S K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
Y C+ CG S H HTD++PY C C SF+T + +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 280 FNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLR 328
+ C C L +H R HTD +P++C+ C F+ K ++ H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 396 ICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHH 441
IC CG K H+R HT +PY C CN S+ + L H
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 600 FSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAH 646
+ C C + S L H R H + +PY CT CN+S + N H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 367 LCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMR 415
+C +CG + + LK HI++ H +P C C +FKT N HM+
Sbjct: 3 ICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY+C CG AF KS H+ +HT +KP
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLG 275
+GE+P+ C C AF K L H +H G
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AFA K++ HQ IHT KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + C C + + K NL QH RIHT EKP S
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C FAQ + L H+RIH KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C AF +K +L H +H G+ S
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ C C K F QK ++ H RI
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRI 34
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C+ CG AF H S HQ IHT KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P++C C F S L H+RIH KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKPF C C K FRQ IH+ +HLRI
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRI 34
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+PF+CK C AF++ HL +H+ +H G+ S
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPS 41
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P C CG F+ N + H+R HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ CK CG AF +H IHT KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C C F Q L +H RIH KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF+ +SS HQ IHT KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C AF + L TH +H GK S
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS 41
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F+ S+L H+ IH KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + CN C + S++ +L H IHT +KP S
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
+KPY C CG AF+ SS HQ IHT KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C YCG AF + HQ IHT KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKP 307
K + C+ C + L L++H RIHT EKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F + L+ H+RIH KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F+ KS AHQ HT KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C TF+Q S L H+R H KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + CN C + S K L H R HT EKP S
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG +F KS HQ IHT KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C +C +F + S L H++IH KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C +F +K L H +H G+ S
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPS 41
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P C++CG +F VH + HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + C++C S + K L H +IHT EKP S
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNF----CDHCFKFVGPEQELNI 351
R H+ EKP+ C +C +F Q +K H+ H N C HC + + +L +
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 415 RRHTGFKPYQCKTCNASYAS-----MRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKH 469
R H+G KPY+C C+A + M +LQ H KF C +C + + H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT---ENVAKFHCPHCDTVIARKSDLGVH 64
Query: 470 MKRHFNTNKP 479
+++ + + P
Sbjct: 65 LRKQHSYSGP 74
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHV-NLHLGKTKSFNCNVCNYSSSLKWNLIQHYR 300
+H+GE+P++C C+ F + ++ H+ H F+C C+ + K +L H R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 159 SSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDH-QDVRNYLCNFCNKTYKDRKT 217
S + H+ KPY C C F MK H L H ++V + C C+ +
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 218 LDNHI 222
L H+
Sbjct: 61 LGVHL 65
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.093, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHT 169
KPY C CG AF KS HQ IHT
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLG 275
+GE+P+ C C AF K L H +H G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F+Q S L H+RIH KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF+ S HQ IHT KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + CN C + S L +H RIHT EKP S
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
+GE+P+QCK C +F ++ L H LH G S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPS 39
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY CK CG +F+ + S H+ +HT P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C +F+Q +L HER+H P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 418 TGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G KPYQCK C S++ L HE H+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 277 TKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
TKS C+ C +LK +L QH RIHT EKP S
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKP 173
Y C CG AFA KS+ HQ IHT KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+R + C C FA+ STL+ H+RIH KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 280 FNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
+ C+ C + + K LI H RIHT EKP S
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY CK CG AF+ + HQ +HT KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F+Q + L+ H+R+H KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + C C + S +LIQH R+HT EKP S
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++CK C AF + HL H +H G+ S
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPS 41
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
+PY C CG AF +S+ HQ IHT KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+RP+ C +C F S L+ H++IH KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
+ + C VC + + + NLI+H +IHT EKP S
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P IC VCG F N H + HTG KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
ERP+ C C AF ++ +L H +H G+ S
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF +S+ HQ IHT KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F S L H++IH KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P CA CG F N F H + HTG KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C AF ++ +L TH +H G+ S
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS 41
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF+ S HQ +HT KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+P+ C C F+Q S L H+R+H KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + CN C + S L +H R+HT EKP S
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF +S+ HQ IHT KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F S L+ H++IH KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + C C + +++ NLI+H +IHT +KP S
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++CK C+ AF +K HL H H G+ S
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY CK C AF K+ HQ HT KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + C VC+ + + K +L QH + HT EKP S
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C +C+ F Q + L H++ H KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ C +C K F QK H+ H +
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKT 34
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSV 768
+ C CS +T++SN RH H ++ Y C +C K + K + T HV +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 419 GFKPYQCKTCNASYASMRVL-QHHEITHSKTLK-FPCINCGKYFTKLEYMIKHMK 471
G Y+CK C+ Y + +H+ +H + +K +PC C K FT+ + M H+K
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F H S HQ IHT KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
S T E+PF+C C+ +F+++ L +H +H G+ S
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPS 41
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 303 TDEKPFNCSLCEKQFRQKIHVKNHLRIIH 331
T EKPF C C+K FRQ+ + +H R+IH
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH-RMIH 35
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C C+ +F Q S L +H IH KP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ C C +F +S+ ++H+ IHT KP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P++C C +F S LL H+R+H KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY CK CG +F S HQ +H+ KP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
+KPY C C F+ KS HQ HT +KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 393 QPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
+P C+ C TF VH R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 277 TKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + C+ C + SLK LI H R HT KP S
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+P+ C C TF+ S L+ H+R H KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
+KPY C CG AF KS H HT KP
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 393 QPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
+P C+ CG F++ +HMR HTG KP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
+G +P+ C C AF+ K +L H+ H G+ S
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPS 39
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 295 LIQHYRIHTDEKPFNCSL--CEKQFRQKIHVKNHLRI 329
L H R HT EKPF+CS CE++F + + H R
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 214 DRKTLDNHILGHVD-IKPYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHV 270
D + +HI H K Y + S+L++H R +HTGE+PF C + C F L H
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHR 69
Query: 271 NLH 273
H
Sbjct: 70 RTH 72
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 379 NELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC--KTCNASYASMR 436
+ +++HI SH CG T+ + + H R HTG KP+ C K C +A
Sbjct: 13 SRIRSHICSH---------PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 437 VLQHHEITH 445
L H TH
Sbjct: 64 ELSRHRRTH 72
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 585 TNFNIHMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIH 622
++ H R H ++PFSC C FA+ L H R H
Sbjct: 33 SHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 694 CNQSFALFSNLNAHYNKHLKVRRFSCT--NCSLNFTYLSNLIRHRRI 738
C +++ S+L AH H + FSC+ C F L RHRR
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|3GVK|A Chain A, Crystal Structure Of Endo-Neuraminidase Nf Mutant
pdb|3GVK|B Chain B, Crystal Structure Of Endo-Neuraminidase Nf Mutant
pdb|3GVK|C Chain C, Crystal Structure Of Endo-Neuraminidase Nf Mutant
Length = 670
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 610 AQLSTLLNH----ERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCH--INNC 663
A L++ LN ++I+ N K YK T +R ++ + +ERI Q + +
Sbjct: 16 AALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGE 75
Query: 664 IF---STKFYSCLRRHRKIFHSNESYAP 688
+F T +Y+ + + + N YAP
Sbjct: 76 LFKITDTPYYNAWPQDKAFVYENVIYAP 103
>pdb|3GVJ|A Chain A, Crystal Structure Of An Endo-Neuraminidasenf Mutant
Length = 670
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 610 AQLSTLLNH----ERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCH--INNC 663
A L++ LN ++I+ N K YK T +R ++ + +ERI Q + +
Sbjct: 16 AALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGE 75
Query: 664 IF---STKFYSCLRRHRKIFHSNESYAP 688
+F T +Y+ + + + N YAP
Sbjct: 76 LFKITDTPYYNAWPQDKAFVYENVIYAP 103
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF SS HQ +HT +P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C+ C F S+ H+R+H +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|3JU4|A Chain A, Crystal Structure Analysis Of Endosialidasenf At 0.98 A
Resolution
pdb|3GVL|A Chain A, Crystal Structure Of Endo-Neuraminidasenf
Length = 670
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 610 AQLSTLLNH----ERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCH--INNC 663
A L++ LN ++I+ N K YK T +R ++ + +ERI Q + +
Sbjct: 16 AALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGE 75
Query: 664 IF---STKFYSCLRRHRKIFHSNESYAP 688
+F T +Y+ + + + N YAP
Sbjct: 76 LFKITDTPYYNAWPQDKAFVYENVIYAP 103
>pdb|1V0E|A Chain A, Endosialidase Of Bacteriophage K1f
pdb|1V0E|B Chain B, Endosialidase Of Bacteriophage K1f
pdb|1V0E|C Chain C, Endosialidase Of Bacteriophage K1f
pdb|1V0E|D Chain D, Endosialidase Of Bacteriophage K1f
pdb|1V0E|E Chain E, Endosialidase Of Bacteriophage K1f
pdb|1V0E|F Chain F, Endosialidase Of Bacteriophage K1f
pdb|1V0F|A Chain A, Endosialidase Of Bacteriophage K1f In Complex With
Oligomeric Alpha-2,8-Sialic Acid
pdb|1V0F|B Chain B, Endosialidase Of Bacteriophage K1f In Complex With
Oligomeric Alpha-2,8-Sialic Acid
pdb|1V0F|C Chain C, Endosialidase Of Bacteriophage K1f In Complex With
Oligomeric Alpha-2,8-Sialic Acid
pdb|1V0F|D Chain D, Endosialidase Of Bacteriophage K1f In Complex With
Oligomeric Alpha-2,8-Sialic Acid
pdb|1V0F|E Chain E, Endosialidase Of Bacteriophage K1f In Complex With
Oligomeric Alpha-2,8-Sialic Acid
pdb|1V0F|F Chain F, Endosialidase Of Bacteriophage K1f In Complex With
Oligomeric Alpha-2,8-Sialic Acid
Length = 666
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 610 AQLSTLLNH----ERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCH--INNC 663
A L++ LN ++I+ N K YK T +R ++ + +ERI Q + +
Sbjct: 12 AALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGE 71
Query: 664 IF---STKFYSCLRRHRKIFHSNESYAP 688
+F T +Y+ + + + N YAP
Sbjct: 72 LFKITDTPYYNAWPQDKAFVYENVIYAP 99
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F S HQ IHT +KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F Q S L NH+RIH KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ C+ C K F Q H+ NH RI
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRI 34
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 145 PYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
P+ C CG F HK++ HQ IHT +P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
+ P IC+ CG F N +H + HTG +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K F C C S + + +L QH R+HT EKP S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKPF C C K + Q++H+ H R+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRV 34
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C C ++ Q L H+R+H KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+PF+C C ++ ++ HL H +H G+ S
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPS 41
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHT 169
KPY C CG AF KS H+ IHT
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHT 34
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG +F KS + H+ IHT KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 744 EGKYVCNYCGKSYIDKRDYTNHVSVHM-ERKSGYT 777
E Y+CN CGKS+I K H +H E+ SG +
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C +F Q S L H RIH KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C C F Q S L +H+R+H KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ C+ CG F S +HQ +HT KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 249 RPFQCKYCNYAFKEKHHLETHVNLHLGK 276
+PFQCK C F HL+TH H G+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKP 173
+ C CG AF KS+ HQ IHT KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 600 FSCLLCNNTFAQLSTLLNHERIHDNHKP 627
F C C F + STL H++IH KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
KPY C CG F+ KS HQ IHT K
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
+GE+P+ C C F K +L H +H G+ S
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLS 39
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
K + CN C S K LI H RIHT EK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C C AF+H +S HQ +H+ KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C +C F+ ++L H+R+H KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + C+VC + S +L QH R+H+ EKP S
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F Q S L NH RIH KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ C+ C K F Q H+ NH RI
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRI 34
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F S H IHT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C F + HL H +H G+ S
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF S+ HQ IHT KP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C AF+ +L TH +H G+ S
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPS 41
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K F C+ C + + K NLI H R HT EKP S
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P C+ C F T N VH R HTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C C F S L+ H+R H KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+PF+C C AF K +L H H G+ S
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPS 41
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C C +F+ S L H+RIH KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.89, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ C CG +F+ S HQ IHT KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKP 307
K F C C S S+ L H RIHT EKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+PF+C C +F L TH +H G+ S
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPS 41
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P CA CG +F + H R HTG KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKT 277
+GE+P+ C C AF K H TH +H G++
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHT 169
KPY C CG AF KS H+ IHT
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHT 34
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+P C C TF Q S L H+RIH KP
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG +F KS HQ IHT P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF +SS HQ H+ KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 613 STLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQD 653
+ L HERIH +P+KC C++ + SN H + +H D
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNH 618
K IH RIH DRPF C C+ Q S L H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 627 PYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNES 685
P KC++C+YS + HERI+ D FKC N C F TK S L +H K FH + S
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMS 65
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C+ CG + K + D HQ +HT +P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYP 110
YKC+KC K Y SK+ + H+ H E P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+RP C C +F Q + L+ H+RIH KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 282 CNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
CN C S +LIQH RIHT EKP S
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
S T E+P++C C AF+ + +L TH +H G+ +S
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRS 41
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
KPY C CG AF +S+ HQ IHT K
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 169 TDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDV 200
T KPY C CG++FRT R NL HQ +
Sbjct: 8 TKEKPYKCYECGKAFRT-----RSNLTTHQVI 34
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+PFQC+ C F + HL +H +H G+ S
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPS 41
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C C F Q S L +H+R+H KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ C+ CG F S +HQ +HT KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKPF C C K+F Q H+ +H R+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRV 34
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
K F C C S K NL+ H RIHT EK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGK 276
++PF+C +C +F+ K +L TH +H G+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
KP+ C +CG +F K + HQ IHT K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
+PF C C +F L+ H+RIH K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 418 TGFKPYQCKTCNASYASMRVLQHHEITHSKT---LKFPCINCGKYFTKLEYMIKHMKR 472
+G QC+ C + L H+ H++T L+FPC CGK F K + + H +
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 480 VCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQ 535
+C +C ++ A +RH+ L PC C A+F S L+ H + H + +
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 23 CPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKK 77
CP+C + F+ +RH+ + Q C YC F L HI + H S +
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHT 169
KPY C CG AF KS HQ HT
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKT 277
+GE+P++C C AF K L H H G++
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 600 FSCLLCNNTFAQLSTLLNHERIHDNHKP 627
F C C TF Q S+L H+RIH KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K F CN C + + +L H RIHT EKP S
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C C +F + SS HQ IHT KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C +C+ +F S+L H+RIH KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + C+VC+ S +L H RIHT EKP S
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+R + C C F Q STL H+RIH KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKP 173
Y C CG AF KS+ HQ IH KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF+ K S H +HT P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C AF +K L H+ +H G S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHT 169
KPY C+ CG AF S H+ +HT
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKT 277
+GE+P+ C+ C AF + L H +H G++
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
S + +PF+C C YA + K +L+ H+N H
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH 32
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 303 TDEKPFNCSLCEKQFRQKIHVKNHL 327
+ KPF CSLCE R K ++K H+
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHM 29
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
S + + F C+YCN FK KH L+ H+ +H
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
RP+ C+ C F S+L+ H R H KP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P C CG FKT + H R HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
+PY C CG AF KSS H+ HT KP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 422 PYQCKTCNASYASMRVLQHHEI---THSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
P C +++ + L HH+ H K+ P CGK F +++ +HMK H +T
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 479 PVCEICSQTMA 489
+CE +
Sbjct: 69 YICEFSGPSSG 79
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
K + C C+Y+S++K NL H R HT EK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 254 KYCNYAFKEKHHLETHVNL-HLGKTKSFN-------CNVCNYSSSLKWNLIQHYRIHTDE 305
K C+ F H L THV + H+G + N C S K+ L+ H R+HT E
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 306 K 306
K
Sbjct: 89 K 89
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C+ CG F H + +H IHT P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C +C F L TL +H RIH P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKP 145
YPC C R R+ K+HLRIH P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQP 48
E+ Y C +C +F L TLK H+ IH + P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ C +C +FR +K+HLRI
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRI 33
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ C CG F+ +S+ + H +HT KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF+ KS H H+ KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
++P C+ CG F + +HMR H+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 763 TNHVSVHMERKSGYTQRCHKCN-ATFRIKKFLTRHMKTHLIQYRCTRCNKTFKQNT 817
TN + M +K G + C +C A + +K + H +RC +C K+ + T
Sbjct: 101 TNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTT 156
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 249 RPFQCKYCNYAFKEKHHLETHVNLHLG 275
RP+ C C F KH +ETH +H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKT 277
+GE P++C C AF K L +H H G++
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLG 275
+GE+P+ C C FK K + HV H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP++C++C K F H+ HLR+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
K ++CNVC + L +L QH R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHL 274
TG +PFQC C+ +F HL H H+
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F S H+ IHT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
E+P++C C F + HL H +H G+ S
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F S H+ IHT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ C+ CG +F+ S HQ IHT P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F S H+ IHT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F Q S L+ H IH KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
+P C++C F Q S+L+ H R H K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K F+C C + S L QH RIHT EKP S
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C+ C F+ L H RIH KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 774 SGYTQR---CHKCNATFRIKKFLTRHMKTHLIQ 803
SG+T++ C KC ATF ++K L +H KTH +
Sbjct: 6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++P+ C C F Q S L H R+H KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F S H+ +HT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C K F QNTS IRH
Sbjct: 13 YECIECGKAFIQNTSLIRH 31
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHL 274
TG +PFQC C+++F HL H H+
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHM 31
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 586 NFNIHMRIHGKDRPFSCL--LCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
+H H + P+ C C+ F+ S L HE++H + K C++ + +
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 77
Query: 644 LAHERIYHQD 653
L H HQD
Sbjct: 78 LKHVAECHQD 87
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
K Y C CG F+ S HQ IHT KP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
K + CN C S L QH +IHT EKP S
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 600 FSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++C C +F++ LL HER+H KP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ C C AF+ KS HQ H + KP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
++PF C C F+ S LL H++ H KP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIH 168
+KPY C YCG +F+ +S+ H H
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLH 273
ERPF+C C F + HL H+ LH
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTD 170
KPY C CG AF KS HQ HT
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 249 RPFQCKYCNYAFKEKHHLETHV 270
RP+ C YCN++FK K +L H+
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHM 22
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 600 FSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+ C +C F+Q S L H+R+H KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKP 173
Y C CG F+ S HQ +HT KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG AF + + H+ IHT +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 280 FNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
+ C+ C + S K+ LI H R H EKP S
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 421 KPYQCKTCNASYASMRVLQHHEITHSK 447
KPYQC C S++ L H ITH++
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTR 37
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KPY C CG F S HQ IHT KP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHT 169
KPY C CG AF S HQ H+
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHS 36
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
KP+ C CG +F +S + H +HT KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 246 TGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
+G+R ++C+ C +F++K L H +H G S
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHF 474
+ C CGK F + ++I+H+KRHF
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHF 36
>pdb|1WJP|A Chain A, Solution Structure Of Zf-C2h2 Domains From Human Zinc
Finger Protein 295
Length = 107
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 16 QDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
+++ Y C LC+ + S L H + C YC F + ++Q H S
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHE--RLCRNAAVCPYCSLRFF-----SPELKQEHES- 63
Query: 76 KKIYYK---CDKCNKTYKSKYKFERHK 99
K YK C +C +T+KS + RH+
Sbjct: 64 -KCEYKKLTCLECMRTFKSSFSIWRHQ 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.136 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,156,014
Number of Sequences: 62578
Number of extensions: 1099096
Number of successful extensions: 6565
Number of sequences better than 100.0: 197
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3325
Number of HSP's gapped (non-prelim): 2802
length of query: 836
length of database: 14,973,337
effective HSP length: 107
effective length of query: 729
effective length of database: 8,277,491
effective search space: 6034290939
effective search space used: 6034290939
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)