RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6556
(836 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 129 bits (327), Expect = 2e-34
Identities = 66/202 (32%), Positives = 89/202 (44%), Gaps = 30/202 (14%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKR 191
A + KPYAC CG +F+ HQ HT KPY C CG+SF +
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS-----DK 62
Query: 192 HNLCDHQDV----RNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTG 247
+L HQ + Y C C K++ R +NL++H R HTG
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQR-------------------ANLRAHQRT-HTG 102
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKP 307
E+P+ C C +F + HL H H G+ K + C C S S + NL H R HT EKP
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGE-KPYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 308 FNCSLCEKQFRQKIHVKNHLRI 329
+ C C K F ++ + H R
Sbjct: 162 YKCPECGKSFSRRDALNVHQRT 183
Score = 98.3 bits (246), Expect = 1e-23
Identities = 71/279 (25%), Positives = 94/279 (33%), Gaps = 93/279 (33%)
Query: 30 FSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNKKIYYKCDKCNKT 88
++ + +P C CG+ F L H QR HT K YKC +C K+
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH--QRTHTGEKP--YKCPECGKS 58
Query: 89 YKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYAC 148
+ K RH+ TH E P Y C C R + +AH R H KPYAC
Sbjct: 59 FSDKKDLTRHQRTH---TGEKP-------YKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 149 KYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFC 208
CG +F+ + AHQ HT KPY C CG+SF
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS------------------------ 144
Query: 209 NKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLET 268
+ NL +H R HTGE+P++C C +F +
Sbjct: 145 ------------------------REDNLHTHQRT-HTGEKPYKCPECGKSFSRRDA--- 176
Query: 269 HVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKP 307
L H R HT +K
Sbjct: 177 --------------------------LNVHQRTHTGKKT 189
Score = 97.9 bits (245), Expect = 1e-23
Identities = 71/276 (25%), Positives = 91/276 (32%), Gaps = 95/276 (34%)
Query: 154 AFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYK 213
+ SS A + KPY C CG+SF
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFS----------------------------- 32
Query: 214 DRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
+ +L H R HTGE+P++C C +F +K L H H
Sbjct: 33 -------------------RSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRHQRTH 72
Query: 274 LGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNM 333
G+ K + C C S S + NL H R HT EKP+ C C K F Q H++ H R
Sbjct: 73 TGE-KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT---- 127
Query: 334 NFCDHCFKFVGPEQELNIFRH-------CEVCDKSNNSYLLCWKCGFKTSVLNELKAHIK 386
H C C KS F + L H +
Sbjct: 128 --------------------HTGEKPYKCPECGKS-----------FSRE--DNLHTHQR 154
Query: 387 SHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKP 422
+H K P C CG +F VH R HTG K
Sbjct: 155 THTGEK-PYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 87.5 bits (218), Expect = 6e-20
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
++ + ++P++C C +F++ L H+R H KPYKC +C S +
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 644 LAHERIYHQDHVFKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALF 701
H+R + + +KC C FS + + LR H++ H+ E P C C +SF+
Sbjct: 66 TRHQRTHTGEKPYKC--PECGKSFSQR--ANLRAHQRT-HTGEK--PYACPECGKSFSQL 118
Query: 702 SNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDK 759
++L AH H + + C C +F+ NL H+R H G+ Y C CGKS+ +
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT----HTGEKPYKCPECGKSFSRR 174
Query: 760 RDYTNHVSVH 769
H H
Sbjct: 175 DALNVHQRTH 184
Score = 87.1 bits (217), Expect = 9e-20
Identities = 60/248 (24%), Positives = 85/248 (34%), Gaps = 79/248 (31%)
Query: 235 SNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWN 294
S+ + + GE+P+ C C +F HL
Sbjct: 7 SSSVAQAAL-EPGEKPYACPECGKSFSRSDHL---------------------------- 37
Query: 295 LIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRH 354
+H R HT EKP+ C C K F K + H R H
Sbjct: 38 -AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT------------------------H 72
Query: 355 -------CEVCDK--SNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFK 405
C C K S + L AH ++H K P C CG +F
Sbjct: 73 TGEKPYKCPECGKSFSQRANLR---------------AHQRTHTGEK-PYACPECGKSFS 116
Query: 406 TNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEY 465
+ H R HTG KPY+C C S++ L H+ TH+ + C CGK F++ +
Sbjct: 117 QLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDA 176
Query: 466 MIKHMKRH 473
+ H + H
Sbjct: 177 LNVHQRTH 184
Score = 77.9 bits (193), Expect = 1e-16
Identities = 57/182 (31%), Positives = 71/182 (39%), Gaps = 48/182 (26%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNK 76
E+ Y CP C K FS L RH H +P +C CG+ F L AH QR HT K
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH--QRTHTGEK 104
Query: 77 KIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAH 136
Y C +C K++ H +AH
Sbjct: 105 P--YACPECGKSF--------------------------------------SQLAHLRAH 124
Query: 137 LRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCD 196
R H KPY C CG +F+ + + HQ HT KPY C CG+SF +R L
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFS-----RRDALNV 179
Query: 197 HQ 198
HQ
Sbjct: 180 HQ 181
Score = 72.9 bits (180), Expect = 8e-15
Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 41/227 (18%)
Query: 403 TFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTK 462
+ + + G KPY C C S++ L H+ TH+ + C CGK F+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 463 LEYMIKHMKRHFNTN-KP-VCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMV 520
+ + +H + H T KP C C ++ + L+ H H + + C C SFS +
Sbjct: 62 KKDLTRHQRTH--TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 521 QLSCHQIRAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRTLPPELRRQFKHDIVY 580
L HQ R H +K + C CG + F
Sbjct: 120 HLRAHQ-RTHTGEKP-YKCPECG----------------------------KSFSR---- 145
Query: 581 MDSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKP 627
+ N + H R H ++P+ C C +F++ L H+R H K
Sbjct: 146 ---EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 63.2 bits (155), Expect = 1e-11
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINC 456
C CG +F + + H R HTG KPY+C C S++ + L H+ TH+ + C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 457 GKYFTKLEYMIKHMKRHFNTN-KP-VCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNA 514
GK F++ + H + H T KP C C ++ + L+ H H + + C C
Sbjct: 84 GKSFSQRANLRAHQRTH--TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 515 SFSSMVQLSCHQIRAHGKQKQRFMCHRCG 543
SFS L HQ R H +K + C CG
Sbjct: 142 SFSREDNLHTHQ-RTHTGEKP-YKCPECG 168
Score = 51.3 bits (124), Expect = 2e-07
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 724 LNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCH 781
++ S+ + + G+ Y C CGKS+ H H K Y C
Sbjct: 1 ISEFGSSSSVAQAAL----EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YK--CP 53
Query: 782 KCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+C +F KK LTRH +TH + Y+C C K+F Q + H
Sbjct: 54 ECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 32.4 bits (75), Expect = 0.38
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HT 73
E+ Y CP C K FS+ L H H +P +C CG+ F LN H QR HT
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH--QRTHT 185
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 92.7 bits (231), Expect = 1e-21
Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 42/214 (19%)
Query: 135 AHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFNLMK 190
+ + K Y C + CG A+ AH HT KP+ C C + F
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFT-----S 56
Query: 191 RHNLCDHQDV----RNYLCN--FCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRIS 244
H+L H +N+ C+ C+ + +N++ H
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFT-------------------TKANMKKHFNR- 96
Query: 245 HTGER--PFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCN--VCNYSSSLKWNLIQH 298
+ + C + C AFK+ + L+ H H + + C C+ SL L +H
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ-LPYECPHEGCDKRFSLPSRLKRH 155
Query: 299 YRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHN 332
++H C + H+ H
Sbjct: 156 EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 80.3 bits (199), Expect = 2e-17
Identities = 45/192 (23%), Positives = 66/192 (34%), Gaps = 21/192 (10%)
Query: 18 ERTYHC--PLCSKQFSKLTTLKRHVGIHMKTQPVRC--GYCGQFFLDLGRLNAHIRQRHT 73
+ Y C C ++K L+ H+ H +P C C + F L L H HT
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HT 68
Query: 74 SNKKIYYKCD--KCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSF--CAYRGRY 129
K + CD C+ + +K ++H N Y C F C +
Sbjct: 69 GEKN--FTCDSDGCDLRFTTKANMKKHFNRF-HNIKICV-------YVCHFENCGKAFKK 118
Query: 130 RYHFKAHLRIHLNIKPYACK--YCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFN 187
K H H PY C C F+ S H+ +H +C +T+
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Query: 188 LMKRHNLCDHQD 199
L +H HQD
Sbjct: 179 LYLKHVAECHQD 190
Score = 75.7 bits (187), Expect = 6e-16
Identities = 47/249 (18%), Positives = 69/249 (27%), Gaps = 81/249 (32%)
Query: 240 HIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQ 297
+ + + C + C ++N N W L
Sbjct: 3 EKAL-PVVYKRYICSFADCG--------------------AAYNKN---------WKLQA 32
Query: 298 HYRIHTDEKPFNCS--LCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRH- 354
H HT EKPF C CEK F H+ H H
Sbjct: 33 HLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT------------------------HT 68
Query: 355 ------CEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQ-PSICAV--CGDTFK 405
C+ C + + +K H H K +C CG FK
Sbjct: 69 GEKNFTCDSDG-----------CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFK 117
Query: 406 TNYNYFVHMRRHTGFKPYQCK--TCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKL 463
+ VH HT PY+C C+ ++ L+ HE H+ +C
Sbjct: 118 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Query: 464 EYMIKHMKR 472
+KH+
Sbjct: 178 TLYLKHVAE 186
Score = 73.8 bits (182), Expect = 3e-15
Identities = 52/248 (20%), Positives = 79/248 (31%), Gaps = 67/248 (27%)
Query: 413 HMRRHTGFKPYQCKT--CNASYASMRVLQHHEITHSKTLKFPC--INCGKYFTKLEYMIK 468
+K Y C C A+Y LQ H H+ FPC C K FT L ++ +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 469 HMKRHFNT-NKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQI 527
H H T K C + C+ F++ + H
Sbjct: 63 HSLTH--TGEKNF--TCDS-----------------------DGCDLRFTTKANMKKHFN 95
Query: 528 RAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNF 587
R H + ++CH CG + FK
Sbjct: 96 RFHNIKICVYVCHF----------------ENCG----------KAFKK-------HNQL 122
Query: 588 NIHMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLA 645
+H H + P+ C C+ F+ S L HE++H + K C++ + + L
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 182
Query: 646 HERIYHQD 653
H HQD
Sbjct: 183 HVAECHQD 190
Score = 69.9 bits (172), Expect = 6e-14
Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 15/169 (8%)
Query: 584 KTNFNIHMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCT--KCNYSARV 639
H+ H ++PF C C F L L H H K + C C+
Sbjct: 27 NWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT 86
Query: 640 LSNKLAHERIYH--QDHVFKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCK--I 693
+N H +H + V+ CH NC F + L+ H+ H+ + P +C
Sbjct: 87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKH--NQLKVHQFS-HTQQL--PYECPHEG 141
Query: 694 CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQ 742
C++ F+L S L H H +CS + ++H H
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 63.0 bits (154), Expect = 2e-11
Identities = 44/244 (18%), Positives = 70/244 (28%), Gaps = 68/244 (27%)
Query: 590 HMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHE 647
+ + + C C + + L H H KP
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP-------------------- 42
Query: 648 RIYHQDHVFKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLN 705
F C C F++ L RH H+ E C
Sbjct: 43 --------FPCKEEGCEKGFTSL--HHLTRHSLT-HTGEK--NFTCDSDG---------- 79
Query: 706 AHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNY--CGKSYIDKRDYT 763
C L FT +N+ +H H+ YVC++ CGK++
Sbjct: 80 ----------------CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLK 123
Query: 764 NHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH--LIQYRCTRCNKTFKQNTSFIR 821
H H ++ Y C+ F + L RH K H + C+ K T +++
Sbjct: 124 VHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 182
Query: 822 HSLK 825
H +
Sbjct: 183 HVAE 186
Score = 27.9 bits (63), Expect = 10.0
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 783 CNATFRIKKFLTRHMKTHLIQ--YRCT--RCNKTFKQNTSFIRHSLKH 826
C A + L H+ H + + C C K F RHSL H
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 87.6 bits (218), Expect = 1e-20
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 229 KPYK---------QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETH---VNLHLGK 276
+ L+ H R HTGE+PF+C C + K +L H ++ +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 277 TKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIH 331
+ F C+VC + + L H HT E P+ CS C +QF QK +++H+ +H
Sbjct: 65 -QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 82.2 bits (204), Expect = 9e-19
Identities = 30/166 (18%), Positives = 48/166 (28%), Gaps = 52/166 (31%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNY 203
C C F K H HT KP+ C CG+ +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYF------------------- 46
Query: 204 LCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRIS--HTGERPFQCKYCNYAFK 261
+ NL H + + E+ F C C F+
Sbjct: 47 -----------------------------RKENLLEHEARNCMNRSEQVFTCSVCQETFR 77
Query: 262 EKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH-YRIHTDEK 306
+ L H+ H G+ + C+ C+ K +L H ++H+
Sbjct: 78 RRMELRLHMVSHTGE-MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 74.8 bits (185), Expect = 3e-16
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYR---I 301
+G +C C+ F K++L+ H H G+ K F C C K NL++H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE-KPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ E+ F CS+C++ FR+++ ++ H+
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVS 88
Score = 66.0 bits (162), Expect = 3e-13
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLR- 138
+C C+K + SKY + H H E + C C + + H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKP----------FECPKCGKCYFRKENLLEHEAR 57
Query: 139 --IHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCD 196
++ + + + C C F + H HT PY C +C Q F ++ +L
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM-----QKKDLQS 112
Query: 197 HQ 198
H
Sbjct: 113 HM 114
Score = 66.0 bits (162), Expect = 4e-13
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 31/139 (22%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQ---NIHTDLKPY 174
C C + +Y+ K H R H KP+ C CG + K + H+ ++ + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 175 LCLTCGQSFRTFNLMKRHNLCDHQDV----RNYLCNFCNKTYKDRKTLDNHILGHVDIKP 230
C C ++FR +R L H Y C+ C++ +
Sbjct: 68 TCSVCQETFR-----RRMELRLHMVSHTGEMPYKCSSCSQQFM----------------- 105
Query: 231 YKQLSNLQSHIRISHTGER 249
Q +LQSH+ H+G
Sbjct: 106 --QKKDLQSHMIKLHSGPS 122
Score = 59.8 bits (146), Expect = 6e-11
Identities = 31/155 (20%), Positives = 46/155 (29%), Gaps = 43/155 (27%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR--HTSN 75
CP C K+F LK H H +P C CG+ + L H + + S
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKA 135
+ + C C +T+ R R +
Sbjct: 65 QV--FTCSVCQETF--------------------------------------RRRMELRL 84
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQN-IHT 169
H+ H PY C C F K +H +H+
Sbjct: 85 HMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 56.7 bits (138), Expect = 5e-10
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 417 HTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNT 476
+G +C TC+ + S L+ H H+ F C CGK + + E +++H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE-ARNCM 60
Query: 477 N---KP-VCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAH 530
N + C +C +T L+ HM H + + C+ C+ F L H I+ H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 56.7 bits (138), Expect = 6e-10
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 14/113 (12%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNH---VSVHME 771
C C F L H R H G+ + C CGK Y K + H ++
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRK----HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 772 RKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ +T C C TFR + L HM +H + Y+C+ C++ F Q H
Sbjct: 64 EQV-FT--CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 56.4 bits (137), Expect = 9e-10
Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHE---ITHSKTLKFPC 453
C C F + Y VH R+HTG KP++C C Y L HE + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 454 INCGKYFTKLEYMIKHMKRHFNTNKP-VCEICSQTMAHNQVLQRHMT 499
C + F + + HM H P C CSQ + LQ HM
Sbjct: 70 SVCQETFRRRMELRLHMVSH-TGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 54.8 bits (133), Expect = 3e-09
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDH--- 654
C C+ F L H R H KP++C KC N L HE + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA-RNCMNRSE 64
Query: 655 -VFKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAH 707
VF C + C F + LR H H+ E P KC C+Q F +L +H
Sbjct: 65 QVFTC--SVCQETFRRR--MELRLHMVS-HTGEM--PYKCSSCSQQFMQKKDLQSH 113
Score = 52.9 bits (128), Expect = 2e-08
Identities = 32/149 (21%), Positives = 49/149 (32%), Gaps = 46/149 (30%)
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRH------- 354
+ C C K+F K ++K H R H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK------------------------HTGEKPFE 37
Query: 355 CEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSH--HFPKQPSICAVCGDTFKTNYNYFV 412
C C K + L H + + +Q C+VC +TF+ +
Sbjct: 38 CPKCGKC-----------YFRK--ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRL 84
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHH 441
HM HTG PY+C +C+ + + LQ H
Sbjct: 85 HMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 49.8 bits (120), Expect = 2e-07
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 584 KTNFNIHMR---IHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
K N H ++ ++ F+C +C TF + L H H PYKC+ C
Sbjct: 48 KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Score = 34.0 bits (79), Expect = 0.048
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNK 76
E+ + C +C + F + L+ H+ H P +C C Q F+ L +H+ + H+
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 87.6 bits (218), Expect = 2e-20
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 25/167 (14%)
Query: 172 KPYLCLTCGQSFRTFNLMKRHNLCD--HQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIK 229
C Q F + + H + H + + ++C++ + + +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSREL--------------R 47
Query: 230 PYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCN--VC 285
P+K L H+R HTGE+P +C + C ++ +L+TH+ H G+ K + C C
Sbjct: 48 PFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE-KPYMCEHEGC 105
Query: 286 NYSSSLKWNLIQH-YRIHTDEKPFNCSL--CEKQFRQKIHVKNHLRI 329
+ + S + +H R H++EKP+ C L C K++ ++ H++
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 73.8 bits (182), Expect = 1e-15
Identities = 32/114 (28%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Query: 229 KPYKQLSNLQSHIRIS--HTGERPFQCKYCNY-----AFKEKHHLETHVNLHLGKTKSFN 281
+ + L HI H + F C + FK ++ L H+ H G+ K
Sbjct: 11 QEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE-KPHK 69
Query: 282 CNV--CNYSSSLKWNLIQHYRIHTDEKPFNC--SLCEKQFRQKIHVKNHLRIIH 331
C C S S NL H R HT EKP+ C C K F H H
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 73.4 bits (181), Expect = 2e-15
Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 60/204 (29%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHV--TENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
+ D C++ + S+ + H N+ E E+ C + CS + +Y H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----CSRELRPFKAQYMLVVHM 59
Query: 138 RIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFNLMKRHN 193
R H KP+ C + C +++ + H HT KPY+C C ++F
Sbjct: 60 RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS--------- 110
Query: 194 LCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S+ H +H+ E+P+ C
Sbjct: 111 ---------------------------------------NASDRAKHQNRTHSNEKPYVC 131
Query: 254 KY--CNYAFKEKHHLETHVNLHLG 275
K C + + L HV G
Sbjct: 132 KLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 70.3 bits (173), Expect = 2e-14
Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 42/183 (22%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVG---IHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTS 74
E CS++F L H+ IH + + C + G
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------------------- 41
Query: 75 NKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFK 134
C + + +K++Y H H E + C + C R + K
Sbjct: 42 -------CSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEG----CRKSYSR---LENLK 86
Query: 135 AHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQN-IHTDLKPYLCLT--CGQSFRTFNLM 189
HLR H KPY C++ C AF++ S R HQN H++ KPY+C C + + + +
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 190 KRH 192
++H
Sbjct: 147 RKH 149
Score = 65.3 bits (160), Expect = 1e-12
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 248 ERPFQCKYCNYAFKEKHHLETHVNLHLGKT--KSFNCNVCNYSSSLK-----WNLIQHYR 300
E + C+ F + L H+N K F C+ S L+ + L+ H R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 301 IHTDEKPFNCSL--CEKQFRQKIHVKNHLRI 329
HT EKP C+ C K + + ++K HLR
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 59.9 bits (146), Expect = 1e-10
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 368 CWKCGFKTSVLNELKAHIKSH--HFPKQPSICAVCGDT-----FKTNYNYFVHMRRHTGF 420
C + +L HI S H ++ +C G + FK Y VHMRRHTG
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 421 KPYQCKT--CNASYASMRVLQHHEITHSKTLKFPC--INCGKYFTKLEYMIKHMKR-HFN 475
KP++C C SY+ + L+ H +H+ + C C K F+ KH R H N
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 476 TNKP-VCEI--CSQTMAHNQVLQRHMTLH 501
KP VC++ C++ L++H+
Sbjct: 126 E-KPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 57.2 bits (139), Expect = 8e-10
Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 38/178 (21%)
Query: 509 CNRCNASFSSMVQLSCH--QIRAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRTL 566
+ C+ F S QL H HG++K+ F+CH G
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGG----------------------- 41
Query: 567 PPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDN 624
R FK + +HMR H ++P C C ++++L L H R H
Sbjct: 42 CSRELRPFKA-------QYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 625 HKPYKCT--KCNYSARVLSNKLAHERIYHQDHV-FKCHINNCIFSTKFYSCLRRHRKI 679
KPY C C+ + S++ H+ H + + C + C S LR+H K
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 55.3 bits (134), Expect = 3e-09
Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 30/176 (17%)
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRHCEVCDKSNNS 364
E C ++F + + +H+ H H G +E C
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHI-----H-----GERKEF----VCHWGG----- 41
Query: 365 YLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAV--CGDTFKTNYNYFVHMRRHTGFKP 422
C + L H++ H K P C C ++ N H+R HTG KP
Sbjct: 42 ---CSRELRPFKAQYMLVVHMRRHTGEK-PHKCTFEGCRKSYSRLENLKTHLRSHTGEKP 97
Query: 423 YQCK--TCNASYASMRVL-QHHEITHSKTLKFPC--INCGKYFTKLEYMIKHMKRH 473
Y C+ C+ ++++ +H THS + C C K +T + KH+K
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 54.9 bits (133), Expect = 6e-09
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 586 NFNIHM---RIHGKDRPFSCLLCNNT-----FAQLSTLLNHERIHDNHKPYKCT--KCNY 635
H+ IHG+ + F C + F L+ H R H KP+KCT C
Sbjct: 18 QLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRK 77
Query: 636 SARVLSNKLAHERIYHQDHVFKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCKI 693
S L N H R + + + C C FS S +H+ HSNE P CK+
Sbjct: 78 SYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA--SDRAKHQNRTHSNEK--PYVCKL 133
Query: 694 --CNQSFALFSNLNAH 707
C + + S+L H
Sbjct: 134 PGCTKRYTDPSSLRKH 149
Score = 54.5 bits (132), Expect = 8e-09
Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 598 RPFSCLLCNNTFAQLSTLLNH---ERIHDNHKPYKCTKCNYSARV-----LSNKLAHERI 649
C+ F L++H E IH K + C S + + H R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 650 YHQDHVFKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCK--ICNQSFALFSNLN 705
+ + KC C +S L+ H + H+ E P C+ C+++F+ S+
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRL--ENLKTHLRS-HTGEK--PYMCEHEGCSKAFSNASDRA 116
Query: 706 AHYNK-HLKVRRFSCTN--CSLNFTYLSNLIRHRRI 738
H N+ H + + C C+ +T S+L +H +
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 44.9 bits (107), Expect = 1e-05
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQ-HEGKYVCNYCGKSYIDKR-DYTNHVSVHMERKS 774
CS F L+ H +H ++VC++ G S + + VHM R +
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 775 G---YTQRCHKCNATFRIKKFLTRHMKTHLIQ--YRCT--RCNKTFKQNTSFIRH 822
G + C ++ + L H+++H + Y C C+K F + +H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 40.7 bits (96), Expect = 4e-04
Identities = 35/152 (23%), Positives = 52/152 (34%), Gaps = 22/152 (14%)
Query: 688 PAKCKICNQSFALFSNLNAHYNK---HLKVRRFSCTNCSLN-----FTYLSNLIRHRRIK 739
+ C+Q F L H N H + + F C + F L+ H R
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR- 61
Query: 740 HSQHEGK--YVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTR 795
H G+ + C + C KSY + H+ H K Y C+ F +
Sbjct: 62 ---HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAK 117
Query: 796 HMK-THLIQ--YRCTR--CNKTFKQNTSFIRH 822
H TH + Y C C K + +S +H
Sbjct: 118 HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 86.6 bits (215), Expect = 5e-20
Identities = 35/180 (19%), Positives = 51/180 (28%), Gaps = 45/180 (25%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLC 195
I K C F+ H + P
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC--------------- 60
Query: 196 DHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKY 255
C K +K L +HIR+ HTGE+PF C +
Sbjct: 61 -----YWEECPREGK-------------------SFKAKYKLVNHIRV-HTGEKPFPCPF 95
Query: 256 --CNYAFKEKHHLETHVNLHLGKTKSFNCNV--CNYSSSLKWNLIQHYRIHTDEKPFNCS 311
C F +L+ H H G+ K F C C+ + + +H +HT +K S
Sbjct: 96 PGCGKIFARSENLKIHKRTHTGE-KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 80.8 bits (200), Expect = 5e-18
Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 26 CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRH------TSNKKIY 79
+ I C + F + L H+ H ++ +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSF--CAYRGRYRYHFKAHL 137
+C + K++K+KYK H H E +PC F C + K H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKP----------FPCPFPGCGKIFARSENLKIHK 112
Query: 138 RIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC 176
R H KP+ C++ C FA+ S R H ++HT K
Sbjct: 113 RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 62.3 bits (152), Expect = 2e-11
Identities = 38/168 (22%), Positives = 59/168 (35%), Gaps = 30/168 (17%)
Query: 285 CNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVG 344
S + I + C++ F + H+ + H G
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV----------GG 52
Query: 345 PEQELNIFRH--CEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAV--C 400
PEQ ++ C KS FK +L HI+ H K P C C
Sbjct: 53 PEQNNHVCYWEECPREGKS-----------FKAK--YKLVNHIRVHTGEK-PFPCPFPGC 98
Query: 401 GDTFKTNYNYFVHMRRHTGFKPYQCKT--CNASYASMRVLQHHEITHS 446
G F + N +H R HTG KP++C+ C+ +A+ + H H+
Sbjct: 99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 61.5 bits (150), Expect = 3e-11
Identities = 35/188 (18%), Positives = 54/188 (28%), Gaps = 46/188 (24%)
Query: 455 NCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLH---------FTQN 505
+ G ++ + + C +T + L H+T+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 506 KHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRT 565
C R SF + +L H R H +K F C CG
Sbjct: 62 WEECPREGKSFKAKYKLVNHI-RVHTGEKP-FPCPFP----------------GCG---- 99
Query: 566 LPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHD 623
+ F N IH R H ++PF C C+ FA S H +H
Sbjct: 100 ------KIFAR-------SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 624 NHKPYKCT 631
+ K +
Sbjct: 147 SDKSGPSS 154
Score = 57.3 bits (139), Expect = 7e-10
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 36/172 (20%)
Query: 484 CSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQ--KQRFMCHR 541
+ + + Q P C+ +FS+M +L H H + +C+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY- 61
Query: 542 CGIINLKRKYHVYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFS 601
EC P + FK K H+R+H ++PF
Sbjct: 62 ---------------WEEC-------PREGKSFKA-------KYKLVNHIRVHTGEKPFP 92
Query: 602 CLL--CNNTFAQLSTLLNHERIHDNHKPYKCTK--CNYSARVLSNKLAHERI 649
C C FA+ L H+R H KP+KC C+ S++ H +
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 55.8 bits (135), Expect = 2e-09
Identities = 30/154 (19%), Positives = 46/154 (29%), Gaps = 28/154 (18%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHER 648
I C+ TF+ + L+ H + P +
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN----------------- 57
Query: 649 IYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKI--CNQSFALFSNLNA 706
H + +C F K L H ++ H+ E P C C + FA NL
Sbjct: 58 --HVCYWEECPREGKSFKAK--YKLVNHIRV-HTGEK--PFPCPFPGCGKIFARSENLKI 110
Query: 707 HYNKHLKVRRFSCTN--CSLNFTYLSNLIRHRRI 738
H H + F C C F S+ +H +
Sbjct: 111 HKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 48.1 bits (115), Expect = 1e-06
Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 18/154 (11%)
Query: 632 KCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFH------SNES 685
S + + +L+ + I + FST L H + H +N
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTM--HELVTHVTMEHVGGPEQNNHV 59
Query: 686 YAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCT--NCSLNFTYLSNLIRHRRIKHSQH 743
+C +SF L H H + F C C F NL H+R H
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT----H 115
Query: 744 EGK--YVCNY--CGKSYIDKRDYTNHVSVHMERK 773
G+ + C + C + + + D H+ VH K
Sbjct: 116 TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 47.3 bits (113), Expect = 2e-06
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 15/144 (10%)
Query: 697 SFALFSNLNAHYNK---HLKVRRFSCTNCSLNFTYLSNLIRHRRIKH-------SQHEGK 746
S + + + +C F+ + L+ H ++H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 747 YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ--Y 804
C GKS+ K NH+ VH K + C F + L H +TH + +
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 805 RCTR--CNKTFKQNTSFIRHSLKH 826
+C C++ F ++ +H H
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVH 145
Score = 46.1 bits (110), Expect = 6e-06
Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 721 NCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVH------MERKS 774
+ + + + + I + + C +++ + HV++
Sbjct: 2 SSGSSGQPIKQELSCKWID--EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 775 GYTQRCHKCNATFRIKKFLTRHMKTHLIQ--YRCTR--CNKTFKQNTSFIRH 822
Y + C + +F+ K L H++ H + + C C K F ++ + H
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 29.2 bits (66), Expect = 3.5
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 782 KCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
++ + K Q C++TF + H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME 48
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 84.1 bits (209), Expect = 1e-19
Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCN 286
K Y +LS+LQ H R HTGE+P+QC + C F L+ H H G K F C C
Sbjct: 16 KRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV-KPFQCKTCQ 73
Query: 287 YSSSLKWNLIQHYRIHTDEKPFNCSL--CEKQFRQKIHVKNHLRI 329
S +L H R HT EKPF+C C+K+F + + H +
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 70.2 bits (173), Expect = 9e-15
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 246 TGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNV--CNYSSSLKWNLIQHYRI 301
+ +RPF C Y CN + + HL+ H H G+ K + C+ C S L +H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE-KPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
HT KPF C C+++F + H+K H R
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 69.9 bits (172), Expect = 1e-14
Identities = 40/165 (24%), Positives = 55/165 (33%), Gaps = 56/165 (33%)
Query: 144 KPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLCLT--CGQSFRTFNLMKRHNLCDHQD 199
+P+ C Y C + S H HT KPY C C + F
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFS--------------- 49
Query: 200 VRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYA 259
+ L+ H R HTG +PFQCK C
Sbjct: 50 ---------------------------------RSDQLKRHQRR-HTGVKPFQCKTCQRK 75
Query: 260 FKEKHHLETHVNLHLGKTKSFNCNV--CNYSSSLKWNLIQHYRIH 302
F HL+TH H G+ K F+C C + L++H+ +H
Sbjct: 76 FSRSDHLKTHTRTHTGE-KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 58.7 bits (143), Expect = 1e-10
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 47/157 (29%)
Query: 18 ERTYHC--PLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHT 73
+R + C P C+K++ KL+ L+ H H +P +C + C + F +L H R RHT
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHT 62
Query: 74 SNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHF 133
K ++C C + + + + H
Sbjct: 63 GVKP--FQCKTCQRKF--------------SRSD------------------------HL 82
Query: 134 KAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIH 168
K H R H KP++C++ C FA H N+H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 57.1 bits (139), Expect = 4e-10
Identities = 32/117 (27%), Positives = 42/117 (35%), Gaps = 12/117 (10%)
Query: 80 YKCD--KCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHL 137
+ C CNK Y + H H E Y C + C R K H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQC----DFKDCERRFSR---SDQLKRHQ 58
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT--CGQSFRTFNLMKRH 192
R H +KP+ CK C F+ H HT KP+ C C + F + + RH
Sbjct: 59 RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 54.4 bits (132), Expect = 3e-09
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 370 KCGFKTSVLNELKAHIKSHHFPKQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C + L+ L+ H + H K P C C F + H RRHTG KP+QCKT
Sbjct: 13 GCNKRYFKLSHLQMHSRKHTGEK-PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 428 CNASYASMRVLQHHEITHS--KTLKFPCINCGKYFTKLEYMIKHMKRH 473
C ++ L+ H TH+ K +C K F + + +++H H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 51.8 bits (125), Expect = 3e-08
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK--CNYSARVLSNK 643
H R H +PF C C F++ L H R H KP+ C C
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
Query: 644 LAHERI 649
+ H +
Sbjct: 113 VRHHNM 118
Score = 48.3 bits (116), Expect = 5e-07
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 688 PAKCK--ICNQSFALFSNLNAHYNKHLKVRRFSCTN--CSLNFTYLSNLIRHRRIKHSQH 743
P C CN+ + S+L H KH + + C C F+ L RH+R H
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR----H 61
Query: 744 EGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH 800
G + C C + + H H K ++ R C F L RH H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHHNMH 119
Score = 47.9 bits (115), Expect = 7e-07
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 626 KPYKCT--KCNYSARVLSNKLAHERIYHQDHVFKCHINNC--IFSTKFYSCLRRHRKIFH 681
+P+ C CN LS+ H R + + ++C +C FS L+RH++ H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRS--DQLKRHQRR-H 61
Query: 682 SNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSC--TNCSLNFTYLSNLIRHRRI 738
+ P +CK C + F+ +L H H + FSC +C F L+RH +
Sbjct: 62 TGVK--PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 43.7 bits (104), Expect = 2e-05
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 656 FKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCKI--CNQSFALFSNLNAHYNKH 711
F C C + S L+ H + H+ E P +C C + F+ L H +H
Sbjct: 7 FMCAYPGCNKRYFKL--SHLQMHSRK-HTGEK--PYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 712 LKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNY--CGKSYIDKRDYTNHVS 767
V+ F C C F+ +L H R H G+ + C + C K + + H +
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRT----HTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Query: 768 VH 769
+H
Sbjct: 118 MH 119
Score = 43.3 bits (103), Expect = 2e-05
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 13/122 (10%)
Query: 418 TGFKPYQCK--TCNASYASMRVLQHHEITHS--KTLKFPCINCGKYFTKLEYMIKHMKRH 473
+ +P+ C CN Y + LQ H H+ K + +C + F++ + + +H +RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 474 FNTN-KP-VCEICSQTMAHNQVLQRHMTLHFTQNK-HPCNR--CNASFSSMVQLSCHQIR 528
T KP C+ C + + + L+ H H T K C C F+ +L H
Sbjct: 62 --TGVKPFQCKTCQRKFSRSDHLKTHTRTH-TGEKPFSCRWPSCQKKFARSDELVRHH-N 117
Query: 529 AH 530
H
Sbjct: 118 MH 119
Score = 37.1 bits (87), Expect = 0.004
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 747 YVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ- 803
++C Y C K Y H H K Y C F L RH + H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 804 -YRCTRCNKTFKQNTSFIRH 822
++C C + F ++ H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTH 85
Score = 32.1 bits (74), Expect = 0.22
Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 41/144 (28%)
Query: 455 NCGKYFTKLEYMIKHMKRHFNTN-KP-VCEI--CSQTMAHNQVLQRHMTLHFTQNKHPCN 510
C K + KL ++ H ++H T KP C+ C + + + L+RH H C
Sbjct: 13 GCNKRYFKLSHLQMHSRKH--TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK 70
Query: 511 RCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRTLPPEL 570
C FS L H R H +K F C C
Sbjct: 71 TCQRKFSRSDHLKTHT-RTHTGEKP-FSCRWP----------------SCQ--------- 103
Query: 571 RRQFKHDIVYMDSKTNFNIHMRIH 594
++F H +H
Sbjct: 104 -KKFAR-------SDELVRHHNMH 119
Score = 28.3 bits (64), Expect = 4.3
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 782 KCNATFRIKKFLTRHMKTHLIQ--YRCTR--CNKTFKQNTSFIRHSLKH 826
CN + L H + H + Y+C C + F ++ RH +H
Sbjct: 13 GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 83.2 bits (207), Expect = 1e-19
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S P +C+ C F K L+TH+ H G K + C C+Y+++ +L +H RIH+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV-KPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 304 DEKPFNCSLCEKQFRQKIHVKNHLRI 329
DE+PF C +C R + HLR
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRS 86
Score = 78.2 bits (194), Expect = 7e-18
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 229 KPYK---------QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKS 279
P+K + L++H+R HTG +P++CK C+YA + L H+ +H + +
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE-RP 64
Query: 280 FNCNVCNYSSSLKWNLIQHYRIHTDEKPFNC 310
F C +C Y+S L H R HT + +
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 66.7 bits (164), Expect = 8e-14
Identities = 31/136 (22%), Positives = 42/136 (30%), Gaps = 49/136 (36%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCL 177
+ C C + K H+R H +KPY CK C A A SS + H IH+D +P+ C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 178 TCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNL 237
C + R S L
Sbjct: 69 ICPYASR------------------------------------------------NSSQL 80
Query: 238 QSHIRISHTGERPFQC 253
H+R HTG+
Sbjct: 81 TVHLRS-HTGDSGPSS 95
Score = 56.3 bits (137), Expect = 4e-10
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
K HMR H +P+ C C+ A S+L H RIH + +P+KC C Y++R S
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL 80
Query: 644 LAHERI 649
H R
Sbjct: 81 TVHLRS 86
Score = 55.1 bits (134), Expect = 1e-09
Identities = 28/77 (36%), Positives = 34/77 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINC 456
C VCG F HMR HTG KPY+CKTC+ + A L H HS F C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 457 GKYFTKLEYMIKHMKRH 473
+ H++ H
Sbjct: 71 PYASRNSSQLTVHLRSH 87
Score = 49.7 bits (120), Expect = 9e-08
Identities = 33/118 (27%), Positives = 42/118 (35%), Gaps = 33/118 (27%)
Query: 594 HGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQD 653
G P C +C F++ L H R H KPYKC C+Y+A S+ H RI
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI---- 58
Query: 654 HVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKH 711
HS+E P KC+IC + S L H H
Sbjct: 59 ---------------------------HSDER--PFKCQICPYASRNSSQLTVHLRSH 87
Score = 49.0 bits (118), Expect = 1e-07
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
++ N H+RIH +RPF C +C S L H R H
Sbjct: 49 SSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 48.2 bits (116), Expect = 3e-07
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 45/131 (34%)
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRH------- 354
P C +C K F +K +K H+R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC------------------------HTGVKPYK 38
Query: 355 CEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHM 414
C+ CD + S + L H++ H + P C +C + + VH+
Sbjct: 39 CKTCDYA-----------AADS--SSLNKHLRIHSDER-PFKCQICPYASRNSSQLTVHL 84
Query: 415 RRHTGFKPYQC 425
R HTG
Sbjct: 85 RSHTGDSGPSS 95
Score = 47.0 bits (113), Expect = 7e-07
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKK 77
+ C +C K FS+ LK H+ H +P +C C D LN H+R H+ +
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERP 64
Query: 78 IYYKCDKCNKTYKSKYKFERHKNTH 102
+KC C ++ + H +H
Sbjct: 65 --FKCQICPYASRNSSQLTVHLRSH 87
Score = 45.9 bits (110), Expect = 2e-06
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK- 746
P KC++C + F+ L H H V+ + C C S+L +H RI H +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI----HSDER 63
Query: 747 -YVCNYCGKSYIDKRDYTNHVSVH 769
+ C C + + T H+ H
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSH 87
Score = 44.0 bits (105), Expect = 9e-06
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 719 CTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGY 776
C C F+ L H R H G Y C C + D H+ +H + + +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC----HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-F 65
Query: 777 TQRCHKCNATFRIKKFLTRHMKTH 800
+C C R LT H+++H
Sbjct: 66 --KCQICPYASRNSSQLTVHLRSH 87
Score = 43.6 bits (104), Expect = 1e-05
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 417 HTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNT 476
P++C+ C ++ L+ H H+ + C C + KH++ H +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH--S 60
Query: 477 N-KP-VCEICSQTMAHNQVLQRHMTLH 501
+ +P C+IC ++ L H+ H
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 42.0 bits (100), Expect = 5e-05
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 747 YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ--Y 804
+ C CGK + K H+ H K Y +C C+ L +H++ H + +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP-Y--KCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 805 RCTRCNKTFKQNTSFIRH 822
+C C + ++ H
Sbjct: 66 KCQICPYASRNSSQLTVH 83
Score = 41.3 bits (98), Expect = 9e-05
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 671 SCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLS 730
L+ H + H+ P KCK C+ + A S+LN H H R F C C S
Sbjct: 22 DKLKTHMRC-HTGVK--PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS 78
Query: 731 NLIRHRRI 738
L H R
Sbjct: 79 QLTVHLRS 86
Score = 27.4 bits (62), Expect = 5.8
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCG 52
ER + C +C + L H+ H G
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 81.0 bits (201), Expect = 1e-18
Identities = 33/185 (17%), Positives = 53/185 (28%), Gaps = 81/185 (43%)
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDH 197
K Y C+ CG +F HKS RD H ++H L+PY C CG+ F+
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK------------- 48
Query: 198 QDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCN 257
+L H++I HTG +P++C C
Sbjct: 49 -----------------------------------MKHHLVGHMKI-HTGIKPYECNICA 72
Query: 258 YAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQF 317
F + H + + K + + E+
Sbjct: 73 KRFMWRDSF-------------------------------HRHVTSCTKSYEAAKAEQNT 101
Query: 318 RQKIH 322
+
Sbjct: 102 TEASG 106
Score = 68.6 bits (169), Expect = 3e-14
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
+G++ + C+ C +F K + H+++HLG + + C VC +K +L+ H +IHT
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 304 DEKPFNCSLCEKQFRQKIHVKNHLRI 329
KP+ C++C K+F + H +
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHV 85
Score = 67.5 bits (166), Expect = 8e-14
Identities = 22/139 (15%), Positives = 36/139 (25%), Gaps = 51/139 (36%)
Query: 128 RYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFN 187
++ H+ +HL ++PY C CG F K H IHT +KPY C C + F
Sbjct: 20 THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM--- 76
Query: 188 LMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTG 247
+ H+ +
Sbjct: 77 ---------------------------------------------WRDSFHRHV---TSC 88
Query: 248 ERPFQCKYCNYAFKEKHHL 266
+ ++ E
Sbjct: 89 TKSYEAAKAEQNTTEASGP 107
Score = 55.1 bits (134), Expect = 1e-09
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 45/132 (34%)
Query: 54 CGQFFLDLGRLNAHIRQR-HTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCI 112
CG+ F + + H H + Y C C K +
Sbjct: 15 CGKSFTHKSQRDRH--MSMHLGLRP--YGCGVCGKKF----------------------- 47
Query: 113 YCRNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
+ ++H H++IH IKPY C C F + S H+++ + K
Sbjct: 48 ---------------KMKHHLVGHMKIHTGIKPYECNICAKRFMWRDS--FHRHVTSCTK 90
Query: 173 PYLCLTCGQSFR 184
Y Q+
Sbjct: 91 SYEAAKAEQNTT 102
Score = 52.4 bits (127), Expect = 1e-08
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
K+ + HM +H RP+ C +C F L+ H +IH KPY+C C
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 49.4 bits (119), Expect = 2e-07
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 591 MRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIY 650
D+ + C C +F S H +H +PY C C ++ + + H +I+
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 651 HQDHVFKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNA 706
++C N C F + HR + S + Q+ S ++
Sbjct: 61 TGIKPYEC--NICAKRFMWR--DSF--HRHV-TSCTK--SYEAAKAEQNTTEASGPSS 109
Score = 45.5 bits (109), Expect = 4e-06
Identities = 19/71 (26%), Positives = 27/71 (38%)
Query: 400 CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKY 459
CG +F HM H G +PY C C + L H H+ + C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 460 FTKLEYMIKHM 470
F + +H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 45.1 bits (108), Expect = 5e-06
Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 46/144 (31%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNK 76
++ Y C C K F+ + RH+ +H+ +P CG CG+ F L H + HT K
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH--MKIHTGIK 64
Query: 77 KIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAH 136
Y+C+ C K + +R F H
Sbjct: 65 P--YECNICAKRF--------------------------------------MWRDSF--H 82
Query: 137 LRIHLNIKPYACKYCGNAFAHKSS 160
+ K Y S
Sbjct: 83 RHVTSCTKSYEAAKAEQNTTEASG 106
Score = 44.0 bits (105), Expect = 1e-05
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPC 453
P C VCG FK ++ HM+ HTG KPY+C C + H S T +
Sbjct: 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH--VTSCTKSYEA 94
Query: 454 INCGKYFT 461
+ T
Sbjct: 95 AKAEQNTT 102
Score = 42.4 bits (101), Expect = 5e-05
Identities = 26/136 (19%), Positives = 37/136 (27%), Gaps = 48/136 (35%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRH----- 354
+ +K + C C K F K H+ + H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSM------------------------HLGLRP 37
Query: 355 --CEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFV 412
C VC K FK + L H+K H K P C +C F +
Sbjct: 38 YGCGVCGKK-----------FKMK--HHLVGHMKIHTGIK-PYECNICAKRF--MWRDSF 81
Query: 413 HMRRHTGFKPYQCKTC 428
H + K Y+
Sbjct: 82 HRHVTSCTKSYEAAKA 97
Score = 41.3 bits (98), Expect = 1e-04
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 38/133 (28%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK- 746
C+ C +SF S + H + HL +R + C C F +L+ H +I H G
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI----HTGIK 64
Query: 747 -YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQYR 805
Y CN C K F + RH+ + Y
Sbjct: 65 PYECNICAK-------------------------------RFMWRDSFHRHVTSCTKSYE 93
Query: 806 CTRCNKTFKQNTS 818
+ + + +
Sbjct: 94 AAKAEQNTTEASG 106
Score = 39.3 bits (93), Expect = 5e-04
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 414 MRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRH 473
+G K Y C+ C S+ H H + C CGK F +++ HMK H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 474 FNTN-KP-VCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSC 524
T KP C IC++ RH+ + + + + S
Sbjct: 61 --TGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGPSS 109
Score = 39.0 bits (92), Expect = 7e-04
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 740 HSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHM 797
S G Y C CGKS+ K H+S+H+ + Y C C F++K L HM
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YG--CGVCGKKFKMKHHLVGHM 57
Query: 798 KTHLIQ--YRCTRCNKTFKQNTSFIRH 822
K H Y C C K F SF RH
Sbjct: 58 KIHTGIKPYECNICAKRFMWRDSFHRH 84
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 80.6 bits (200), Expect = 2e-18
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 235 SNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWN 294
S ++ F CK+C F + ++L H H + + + C++C+ + + +
Sbjct: 3 SGSSGGRLP-SKTKKEFICKFCGRHFTKSYNLLIHERTHTDE-RPYTCDICHKAFRRQDH 60
Query: 295 LIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
L H IH+ EKPF C C K F Q + H +
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 80.2 bits (199), Expect = 2e-18
Identities = 30/180 (16%), Positives = 46/180 (25%), Gaps = 78/180 (43%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKR 191
K + CK+CG F + H+ HTD +PY C C ++FR
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR------- 56
Query: 192 HNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPF 251
+ +L+ H I H+ E+PF
Sbjct: 57 -----------------------------------------RQDHLRDHRYI-HSKEKPF 74
Query: 252 QCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCS 311
+C+ C F S L H +H +
Sbjct: 75 KCQECGKGF-------------------------CQSR----TLAVHKTLHMQTSSPTAA 105
Score = 55.1 bits (134), Expect = 1e-09
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
+ + + F C C F + LL HER H + +PY C C+ + R +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 644 LAHERIYHQDHVFKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKC 691
H I+ ++ FKC C F L H+ + H S
Sbjct: 62 RDHRYIHSKEKPFKC--QECGKGFCQS--RTLAVHKTL-HMQTS--SPTA 104
Score = 54.7 bits (133), Expect = 2e-09
Identities = 27/143 (18%), Positives = 41/143 (28%), Gaps = 43/143 (30%)
Query: 35 TLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNKKIYYKCDKCNKTYKSKY 93
+ C +CG+ F L H +R HT + Y CD C+K +
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH--ERTHTDERP--YTCDICHKAF---- 55
Query: 94 KFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGN 153
R + H + H IH KP+ C+ CG
Sbjct: 56 ----------------------------------RRQDHLRDHRYIHSKEKPFKCQECGK 81
Query: 154 AFAHKSSRDAHQNIHTDLKPYLC 176
F + H+ +H
Sbjct: 82 GFCQSRTLAVHKTLHMQTSSPTA 104
Score = 54.0 bits (131), Expect = 4e-09
Identities = 24/139 (17%), Positives = 36/139 (25%), Gaps = 45/139 (32%)
Query: 294 NLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFR 353
+K F C C + F + ++ H R
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT------------------------ 39
Query: 354 H-------CEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKT 406
H C++C K+ F+ + L+ H H K P C CG F
Sbjct: 40 HTDERPYTCDICHKA-----------FRRQ--DHLRDHRYIHSKEK-PFKCQECGKGFCQ 85
Query: 407 NYNYFVHMRRHTGFKPYQC 425
+ VH H
Sbjct: 86 SRTLAVHKTLHMQTSSPTA 104
Score = 52.4 bits (127), Expect = 1e-08
Identities = 28/80 (35%), Positives = 37/80 (46%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPC 453
IC CG F +YN +H R HT +PY C C+ ++ L+ H HSK F C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 454 INCGKYFTKLEYMIKHMKRH 473
CGK F + + H H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 52.1 bits (126), Expect = 2e-08
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 671 SCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLS 730
S R + CK C + F NL H H R ++C C F
Sbjct: 3 SGSSGGRLP-SKTKK--EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Query: 731 NLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNA 785
+L HR I H + + C CGK + R H ++HM+ S +
Sbjct: 60 HLRDHRYI----HSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS------PTAAS 106
Score = 49.4 bits (119), Expect = 2e-07
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 730 SNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATF 787
S R + K ++C +CG+ + + H H + + YT C C+ F
Sbjct: 3 SGSSGGRLP----SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YT--CDICHKAF 55
Query: 788 RIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
R + L H H + ++C C K F Q+ + H
Sbjct: 56 RRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 48.6 bits (117), Expect = 3e-07
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+ + H IH K++PF C C F Q TL H+ +H
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 45.5 bits (109), Expect = 3e-06
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMK 471
K + CK C + L HE TH+ + C C K F + +++ H
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Query: 472 RHFNTNKP-VCEICSQTMAHNQVLQRHMTLH 501
H + KP C+ C + ++ L H TLH
Sbjct: 67 IH-SKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 32.0 bits (74), Expect = 0.15
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNK 76
ER Y C +C K F + L+ H IH K +P +C CG+ F L H + H
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH--KTLHMQTS 100
Query: 77 KIYYKC 82
Sbjct: 101 S--PTA 104
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 76.8 bits (190), Expect = 5e-17
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNV--CN 286
K ++ S ++ H+ H G R C C AF E L+ H +H G+ K F C C
Sbjct: 15 KMFRDNSAMRKHLHT-H-GPRVHVCAECGKAFVESSKLKRHQLVHTGE-KPFQCTFEGCG 71
Query: 287 YSSSLKWNLIQHYRIHTDEKPFNCSL--CEKQFRQKIHVKNHLRI 329
SL +NL H RIHT ++P+ C C K+F Q ++K+H+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 71.8 bits (177), Expect = 3e-15
Identities = 41/185 (22%), Positives = 54/185 (29%), Gaps = 83/185 (44%)
Query: 128 RYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLT--CGQSFRT 185
R + HL H + + C CG AF S HQ +HT KP+ C CG+ F
Sbjct: 18 RDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS- 75
Query: 186 FNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISH 245
NL++H+RI H
Sbjct: 76 -----------------------------------------------LDFNLRTHVRI-H 87
Query: 246 TGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
TG+RP+ C + CN K F S+ NL H H
Sbjct: 88 TGDRPYVCPFDGCN--------------------KKFAQ-----ST----NLKSHILTHA 118
Query: 304 DEKPF 308
K
Sbjct: 119 KAKNN 123
Score = 61.0 bits (149), Expect = 2e-11
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 248 ERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDE 305
R C + C F++ + H++ H G + C C + L +H +HT E
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GP-RVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 306 KPFNCSL--CEKQFRQKIHVKNHLRI 329
KPF C+ C K+F +++ H+RI
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 58.7 bits (143), Expect = 1e-10
Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 48/164 (29%)
Query: 17 DERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTS 74
+ RT CP C+K F + +++H+ H + C CG+ F++ +L H HT
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQL-VHTG 59
Query: 75 NKKIYYKC--DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYH 132
K ++C + C K + ++
Sbjct: 60 EKP--FQCTFEGCGKRF--------------------------------------SLDFN 79
Query: 133 FKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPY 174
+ H+RIH +PY C + C FA ++ +H H K
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 57.9 bits (141), Expect = 2e-10
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK--CNYSARVLSNK 643
H+ HG R C C F + S L H+ +H KP++CT C + N
Sbjct: 22 AMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 80
Query: 644 LAHERIYHQDHVFKCHINNC--IFSTKFYSCLRRHRKI 679
H RI+ D + C + C F+ + L+ H
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQS--TNLKSHILT 116
Score = 49.8 bits (120), Expect = 1e-07
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 717 FSCTN--CSLNFTYLSNLIRHRRIKHSQH-EGKYVCNYCGKSYIDKRDYTNHVSVHMERK 773
+C + C+ F S + +H H +VC CGK++++ H VH K
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHT----HGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 774 SGYTQRCHKCNATFRIKKFLTRHMKTHLIQ--YRCTR--CNKTFKQNTSFIRHSLKH 826
+ C F + L H++ H Y C CNK F Q+T+ H L H
Sbjct: 62 P-FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 49.8 bits (120), Expect = 1e-07
Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 38/151 (25%)
Query: 481 CEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCH 540
+ C++ N +++H+ H H C C +F +L HQ H +K
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ-LVHTGEK----PF 63
Query: 541 RCGIINLKRKYHVYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPF 600
+C CG ++F D N H+RIH DRP+
Sbjct: 64 QC-------------TFEGCG----------KRFSLD-------FNLRTHVRIHTGDRPY 93
Query: 601 SCLL--CNNTFAQLSTLLNHERIHDNHKPYK 629
C CN FAQ + L +H H K +
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 48.7 bits (117), Expect = 4e-07
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT--CNASYASMRVLQHHEITHS--KTL 449
+CA CG F + H HTG KP+QC C ++ L+ H H+ +
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 450 KFPCINCGKYFTKLEYMIKHMKRH 473
P C K F + + H+ H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 46.7 bits (112), Expect = 2e-06
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 688 PAKC--KICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEG 745
C K C + F S + H + H R C C F S L RH+ + H G
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLV----HTG 59
Query: 746 K--YVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH 800
+ + C + CGK + + HV +H + Y CN F L H+ TH
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 45.6 bits (109), Expect = 5e-06
Identities = 39/154 (25%), Positives = 53/154 (34%), Gaps = 50/154 (32%)
Query: 304 DEKPFNCSL--CEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRH------C 355
+ + C C K FR ++ HL H C
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHT------------------------HGPRVHVC 37
Query: 356 EVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAV--CGDTFKTNYNYFVH 413
C K+ F S ++LK H H K P C CG F ++N H
Sbjct: 38 AECGKA-----------FVES--SKLKRHQLVHTGEK-PFQCTFEGCGKRFSLDFNLRTH 83
Query: 414 MRRHTGFKPYQCKT--CNASYASMRVLQHHEITH 445
+R HTG +PY C CN +A L+ H +TH
Sbjct: 84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 44.4 bits (106), Expect = 1e-05
Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 42/155 (27%)
Query: 278 KSFNC--NVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNF 335
++ C C + +H H + C+ C K F + +K H +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLV------ 56
Query: 336 CDH----CFKFVGPEQELNIFRHCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFP 391
H F+ C CG + S+ L+ H++ H
Sbjct: 57 --HTGEKPFQ-------------CTFEG-----------CGKRFSLDFNLRTHVRIHTGD 90
Query: 392 KQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQ 424
+ P +C C F + N H+ H K Q
Sbjct: 91 R-PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 42.1 bits (100), Expect = 8e-05
Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 626 KPYKCTK--CNYSARVLSNKLAHERIYHQDHVFKCHINNC--IFSTKFYSCLRRHRKIFH 681
+ C C R S H H V C C F S L+RH+ + H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVC--AECGKAFVES--SKLKRHQLV-H 57
Query: 682 SNESYAPAKCKI--CNQSFALFSNLNAHYNKHLKVRRFSC--TNCSLNFTYLSNLIRHRR 737
+ E P +C C + F+L NL H H R + C C+ F +NL H
Sbjct: 58 TGEK--PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Query: 738 I 738
Sbjct: 116 T 116
Score = 35.2 bits (82), Expect = 0.019
Identities = 34/158 (21%), Positives = 49/158 (31%), Gaps = 42/158 (26%)
Query: 447 KTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKP-VCEICSQTMAHNQVLQRHMTLHFTQN 505
+T+ P C K F M KH+ H + VC C + + L+RH +H T
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQLVH-TGE 60
Query: 506 K-HPCNR--CNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGY 562
K C C FS L H R H + ++C C
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRP-YVC----------------PFDGCN- 101
Query: 563 TRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPF 600
++F TN H+ H K +
Sbjct: 102 ---------KKFAQ-------STNLKSHILTHAKAKNN 123
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 75.3 bits (186), Expect = 7e-17
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 236 NLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLG---KTKSFNCNVCNYSSSLK 292
+ S R HTGE+P+ C +C+ F++K L+ H + +F C+ C + + +
Sbjct: 2 SSGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 293 WNLIQHYRIHTDEKPFNCSLCEKQF 317
+ +H
Sbjct: 61 NTMARHADNCAGPDGVEGENSGPSS 85
Score = 66.0 bits (162), Expect = 1e-13
Identities = 19/133 (14%), Positives = 32/133 (24%), Gaps = 53/133 (39%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTD----LKPYLCLTCGQSFRTFN 187
+ R H KPYAC +C F K D H + D ++C CG++F
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT--- 58
Query: 188 LMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTG 247
+ + + H G
Sbjct: 59 ---------------------------------------------RRNTMARHADN-CAG 72
Query: 248 ERPFQCKYCNYAF 260
+ + +
Sbjct: 73 PDGVEGENSGPSS 85
Score = 60.2 bits (147), Expect = 1e-11
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIH----LNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKP 173
Y CS C R + H + + + C CG F +++ H +
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 174 YLCLTCGQSF 183
G S
Sbjct: 76 VEGENSGPSS 85
Score = 53.3 bits (129), Expect = 4e-09
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH----DNHKPYKCTKCNYSARVLS 641
+ R H ++P++C C+ TF Q L H + + + C+KC + +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 642 NKLAHERI 649
H
Sbjct: 62 TMARHADN 69
Score = 52.9 bits (128), Expect = 6e-09
Identities = 26/135 (19%), Positives = 34/135 (25%), Gaps = 55/135 (40%)
Query: 294 NLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFR 353
+ R HT EKP+ CS C+K FRQK + H + H+ NF F
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFV------------ 49
Query: 354 HCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVH 413
C C K TF H
Sbjct: 50 -CSKCGK------------------------------------------TFTRRNTMARH 66
Query: 414 MRRHTGFKPYQCKTC 428
G + +
Sbjct: 67 ADNCAGPDGVEGENS 81
Score = 50.6 bits (122), Expect = 3e-08
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 584 KTNFNIHMRIH----GKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
K ++H + + F C C TF + +T+ H +
Sbjct: 28 KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 47.9 bits (115), Expect = 3e-07
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH---SKTLK-FPCINCGKYFTKLEYMI 467
R HTG KPY C C+ ++ ++L H + + F C CGK FT+ M
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 468 KHMKRH 473
+H
Sbjct: 65 RHADNC 70
Score = 45.2 bits (108), Expect = 2e-06
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTG----FKPYQCKTCNASYASMRVLQHHEITHSKTL 449
P C+ C TF+ +H +R+ + C C ++ + H +
Sbjct: 15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 450 KFPCINCGKYF 460
N G
Sbjct: 75 GVEGENSGPSS 85
Score = 44.1 bits (105), Expect = 7e-06
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Query: 731 NLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHM-ERKSGYTQRCHKCNATF 787
+ R H G+ Y C++C K++ K+ H + C KC TF
Sbjct: 2 SSGSSGRT----HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57
Query: 788 RIKKFLTRHMKTHLIQ--YRCTRCNKTF 813
+ + RH +
Sbjct: 58 TRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 43.7 bits (104), Expect = 8e-06
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 673 LRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKH----LKVRRFSCTNCSLNFTY 728
+ H+ E P C C+++F L+ H+ ++ F C+ C FT
Sbjct: 3 SGSSGRT-HTGEK--PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 729 LSNLIRHRRIKHSQHEGK--YVCNYCGKSY 756
+ + RH G G S
Sbjct: 60 RNTMARHADN----CAGPDGVEGENSGPSS 85
Score = 38.3 bits (90), Expect = 8e-04
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 780 CHKCNATFRIKKFLTRHMKTH------LIQYRCTRCNKTFKQNTSFIRH 822
C C+ TFR K+ L H K + + C++C KTF + + RH
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 36.0 bits (84), Expect = 0.005
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 9/77 (11%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIH----MKTQPVRCGYCGQFFLDLGRLNAHIRQR-H 72
E+ Y C C K F + L H + C CG+ F + H
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH--ADNC 70
Query: 73 TSNKKIYYKCDKCNKTY 89
+ + +
Sbjct: 71 AGPDG--VEGENSGPSS 85
Score = 30.2 bits (69), Expect = 0.50
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 14 ESQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFF 58
+ + C C K F++ T+ RH V G
Sbjct: 41 PNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 29.0 bits (66), Expect = 1.3
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 793 LTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+TH + Y C+ C+KTF+Q H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 70.2 bits (173), Expect = 4e-15
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 41/112 (36%)
Query: 229 KPYK-----------QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKT 277
+PY Q +L HIRI HTG++PFQC+ C F HL
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHL----------- 50
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
H R HT EKPF C +C ++F + K H +I
Sbjct: 51 ------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 65.6 bits (161), Expect = 2e-13
Identities = 32/134 (23%), Positives = 43/134 (32%), Gaps = 51/134 (38%)
Query: 144 KPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVR 201
+PYAC C F+ S H IHT KP+ C C ++F
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFS----------------- 45
Query: 202 NYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFK 261
+ +L +HIR HTGE+PF C C F
Sbjct: 46 -------------------------------RSDHLTTHIRT-HTGEKPFACDICGRKFA 73
Query: 262 EKHHLETHVNLHLG 275
+ H +HL
Sbjct: 74 RSDERKRHTKIHLR 87
Score = 58.2 bits (142), Expect = 8e-11
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLA 645
+ H+RIH +PF C +C F++ L H R H KP+ C C +
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 646 HERI 649
H +I
Sbjct: 81 HTKI 84
Score = 57.5 bits (140), Expect = 1e-10
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKR 191
H+RIH KP+ C+ C F+ H HT KP+ C CG+ F + KR
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 192 H 192
H
Sbjct: 81 H 81
Score = 54.0 bits (131), Expect = 2e-09
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 400 CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKY 459
C F + + H+R HTG KP+QC+ C +++ L H TH+ F C CG+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 460 FTKLEYMIKHMKRH 473
F + + +H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 53.6 bits (130), Expect = 3e-09
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
ER Y CP+ C ++FS+ +L RH+ IH +P +C C + F L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTH 102
K + CD C + + + +RH H
Sbjct: 61 KP--FACDICGRKFARSDERKRHTKIH 85
Score = 45.9 bits (110), Expect = 2e-06
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 656 FKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLK 713
+ C + +C FS L RH +I H+ + P +C+IC ++F+ +L H H
Sbjct: 5 YACPVESCDRRFSQS--GSLTRHIRI-HTGQK--PFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 714 VRRFSCTNCSLNFTYLSNLIRHRRI 738
+ F+C C F RH +I
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKI 84
Score = 44.8 bits (107), Expect = 4e-06
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
C + S L HI+ H K P C +C F + + H+R HTG KP+ C C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 431 SYASMRVLQHHEITH 445
+A + H H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 41.7 bits (99), Expect = 5e-05
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
+ H+R H ++PF+C +C FA+ H +IH
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.7 bits (99), Expect = 5e-05
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 720 TNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYT 777
+C F+ +L RH RI H G+ + C C +++ T H+ H K +
Sbjct: 10 ESCDRRFSQSGSLTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FA 64
Query: 778 QRCHKCNATFRIKKFLTRHMKTH 800
C C F RH K H
Sbjct: 65 --CDICGRKFARSDERKRHTKIH 85
Score = 37.1 bits (87), Expect = 0.002
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 47/126 (37%)
Query: 305 EKPFNCSL--CEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRH-------C 355
E+P+ C + C+++F Q + H+RI H C
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI------------------------HTGQKPFQC 37
Query: 356 EVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMR 415
+C ++ F S + L HI++H K P C +CG F + H +
Sbjct: 38 RICMRN-----------F--SRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 83
Query: 416 RHTGFK 421
H K
Sbjct: 84 IHLRQK 89
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 67.1 bits (165), Expect = 4e-14
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S + P +C C+Y+ K L H +H + F CN C++ + NL +H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTD-RPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 304 DEKPFNCS 311
+ S
Sbjct: 62 GDMSGPSS 69
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
CS C+Y + + H RIH +P+ C YC S+ H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 52.9 bits (128), Expect = 4e-09
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 592 RIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
P C C+ + + + L HERIH +P+KC C++ + SN H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 51.3 bits (124), Expect = 1e-08
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 229 KPYK---------QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLG 275
P K + L+ H RI H +RPF+C YC++ K+ +L H+ G
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERI-HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 50.2 bits (121), Expect = 3e-08
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDH 197
+ P C C + + K++ H+ IH +P+ C C + + NL H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK-----QPSNLSKH 56
Query: 198 Q 198
Sbjct: 57 M 57
Score = 44.4 bits (106), Expect = 4e-06
Identities = 16/48 (33%), Positives = 19/48 (39%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
K IH RIH DRPF C C+ Q S L H + +
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 43.6 bits (104), Expect = 7e-06
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
P C+ C + + +H R H +P++C C+ L H
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 41.3 bits (98), Expect = 5e-05
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 415 RRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRH 473
+ P +C C+ S +S L+ HE H F C C + + KHMK+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 38.6 bits (91), Expect = 3e-04
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ P CS C K ++ H RI
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI 31
Score = 37.1 bits (87), Expect = 0.001
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
P KC C+ S + + L H H R F C CS + SNL +H +
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 36.7 bits (86), Expect = 0.002
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKS 774
C+ CS + + + L H RI H + CNYC + + H+ S
Sbjct: 10 EKCSECSYSCSSKAALRIHERI----HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS 65
Query: 775 GY 776
G
Sbjct: 66 GP 67
Score = 36.7 bits (86), Expect = 0.002
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 780 CHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
C +C+ + K L H + H ++C C+ KQ ++ +H K
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 35.9 bits (84), Expect = 0.003
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNK 76
C CS S L+ H IH +P +C YC L+ H++ + +
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFHGDM 64
Score = 35.6 bits (83), Expect = 0.004
Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 33/92 (35%)
Query: 620 RIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKI 679
+ P KC++C+YS + HERI
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI------------------------------ 31
Query: 680 FHSNESYAPAKCKICNQSFALFSNLNAHYNKH 711
H + P KC C+ SNL+ H K
Sbjct: 32 -HCTDR--PFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 35.6 bits (83), Expect = 0.005
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 48 PVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
P +C C L H R H +++ +KC+ C+ K +H + S
Sbjct: 9 PEKCSECSYSCSSKAALRIHER-IHCTDRP--FKCNYCSFDTKQPSNLSKHMKKFHGDMS 65
Query: 108 EYPC 111
Sbjct: 66 GPSS 69
Score = 32.9 bits (76), Expect = 0.038
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 368 CWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C +C + S L+ H + H + P C C K N HM++ G
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDR-PFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 66.8 bits (164), Expect = 5e-14
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 32/98 (32%)
Query: 236 NLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNL 295
+ S R H+GE+P++C C+ F + ++ H+
Sbjct: 2 SSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHI------------------------- 35
Query: 296 IQHYRIHTDE--KPFNCSLCEKQFRQKIHVKNHLRIIH 331
E F+C C+ +K + HLR H
Sbjct: 36 ----LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 60.6 bits (148), Expect = 7e-12
Identities = 17/122 (13%), Positives = 26/122 (21%), Gaps = 50/122 (40%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHT--DLKPYLCLTCGQSFRTFNLM 189
+ R H KPY C C F + H ++ + C C
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA----- 56
Query: 190 KRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGER 249
+ S+L H+R H+
Sbjct: 57 -------------------------------------------RKSDLGVHLRKQHSYSG 73
Query: 250 PF 251
P
Sbjct: 74 PS 75
Score = 58.3 bits (142), Expect = 6e-11
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH--DNHKPYKCTKCNYSARVLSNK 643
+ R H ++P+ C +C+ F Q T+ H +N + C C+ S+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 644 LAHERIYH 651
H R H
Sbjct: 62 GVHLRKQH 69
Score = 52.1 bits (126), Expect = 8e-09
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 294 NLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNF----CDHCFK 341
+ R H+ EKP+ C +C +F Q +K H+ H N C HC
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT 53
Score = 51.8 bits (125), Expect = 9e-09
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS--KTLKFPCINCGKYFTKLEYMIKHM 470
R H+G KPY+C C+A + ++ H + KF C +C + + H+
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 471 KRH 473
++
Sbjct: 66 RKQ 68
Score = 47.9 bits (115), Expect = 2e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHM--KTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
E+ Y C +C +F++ T+K H+ C +C L H+R++H+ +
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Query: 76 K 76
Sbjct: 73 G 73
Score = 46.4 bits (111), Expect = 7e-07
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHL--NIKPYACKYCGNAFAHKSSRDAHQ-NIHTDLKPY 174
Y C C R K H+ N+ + C +C A KS H H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 43.7 bits (104), Expect = 7e-06
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 673 LRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHL--KVRRFSCTNCSLNFTYLS 730
+ HS E P +C IC+ F + H + V +F C +C S
Sbjct: 3 SGSSGRT-HSGEK--PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Query: 731 NLIRHRRIKHS 741
+L H R +HS
Sbjct: 60 DLGVHLRKQHS 70
Score = 41.7 bits (99), Expect = 3e-05
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 584 KTNFNIHMRIH--GKDRPFSCLLCNNTFAQLSTLLNHER-IHDNHKPY 628
+H+ F C C+ A+ S L H R H P
Sbjct: 28 SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 41.7 bits (99), Expect = 4e-05
Identities = 14/64 (21%), Positives = 25/64 (39%)
Query: 703 NLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDY 762
+ + H + + C C FT + H KH+++ K+ C +C K D
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 763 TNHV 766
H+
Sbjct: 62 GVHL 65
Score = 41.4 bits (98), Expect = 5e-05
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 31/94 (32%)
Query: 614 TLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCL 673
+ + R H KPY+C C+ F+ +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHAR----------------------------FTQS--GTM 31
Query: 674 RRHRKIFHSNESYAPAKCKICNQSFALFSNLNAH 707
+ H E+ A C C+ A S+L H
Sbjct: 32 KMHILQ-KHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 39.8 bits (94), Expect = 2e-04
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 35 TLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYK 94
+ H +P C C F G + HI Q+HT N + C C+ K
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSD 60
Query: 95 FERH-KNTH 102
H + H
Sbjct: 61 LGVHLRKQH 69
Score = 36.0 bits (84), Expect = 0.003
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 779 RCHKCNATFRIKKFLTRHMKTH----LIQYRCTRCNKTFKQNTSFIRH 822
C+ C+A F + H+ + ++ C C+ + + H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 30.6 bits (70), Expect = 0.31
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 13 HESQDERTYHCPLCSKQFSKLTTLKRHV 40
+++ +HCP C ++ + L H+
Sbjct: 38 KHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 28.6 bits (65), Expect = 1.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 793 LTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
+TH + Y C C+ F Q+ + H L+
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
Score = 27.9 bits (63), Expect = 3.2
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 494 LQRHMTLHFTQNK-HPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCG 543
H + K + C C+A F+ + H ++ H + +F C C
Sbjct: 3 SGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCD 52
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 64.9 bits (159), Expect = 3e-13
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNV--CNYSSSLKWNLIQHYRIH 302
T C + + HL+ H+ H G+ K ++C+ C + + L +HYR H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGE-KPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 303 TDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T +PF C C++ F + H+ H++
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 54.8 bits (133), Expect = 1e-09
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 384 HIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCK--TCNASYASMRVLQHH 441
+H A CG T+ + + H+R HTG KPY C C +A L H
Sbjct: 2 RTATHTCD-----YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Query: 442 EITHSKTLKFPCINCGKYFTKLEYMIKHMKRHF 474
H+ F C C + F++ +++ HMKRHF
Sbjct: 57 YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 54.8 bits (133), Expect = 1e-09
Identities = 32/137 (23%), Positives = 37/137 (27%), Gaps = 51/137 (37%)
Query: 140 HLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFNLMKRHNLCDH 197
CG + S AH HT KPY C CG F
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFA------------- 48
Query: 198 QDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCN 257
+ L H R HTG RPFQC+ C+
Sbjct: 49 -----------------------------------RSDELTRHYRK-HTGHRPFQCQKCD 72
Query: 258 YAFKEKHHLETHVNLHL 274
AF HL H+ H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 52.5 bits (127), Expect = 8e-09
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 117 IYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPY 174
+ C H KAHLR H KPY C + CG FA H HT +P+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 175 LCLTCGQSF 183
C C ++F
Sbjct: 67 QCQKCDRAF 75
Score = 46.8 bits (112), Expect = 8e-07
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 588 NIHMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
H+R H ++P+ C C FA+ L H R H H+P++C KC+
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Score = 41.4 bits (98), Expect = 6e-05
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSN 75
T C K ++K + LK H+ H +P C + CG F L H R +HT +
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGH 63
Query: 76 KKIYYKCDKCNKTYKSKYKFERHKNTH 102
+ ++C KC++ + H H
Sbjct: 64 RP--FQCQKCDRAFSRSDHLALHMKRH 88
Score = 40.6 bits (96), Expect = 1e-04
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 416 RHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPC--INCGKYFTKLEYMIKHMKRH 473
+ T C +Y L+ H TH+ + C CG F + + + +H ++H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 474 FNTNKPVCEICSQTMAHNQVLQRHMTLHF 502
C+ C + + + L HM HF
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 39.8 bits (94), Expect = 2e-04
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 71 RHTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYR 130
+ T+ C KTY + H TH E Y C + C ++
Sbjct: 1 KRTATHT--CDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDW-------DGCGWKFARS 50
Query: 131 YHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
H R H +P+ C+ C AF+ H H
Sbjct: 51 DELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.5 bits (88), Expect = 0.002
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 656 FKCHINNCIFSTKFYSC---LRRHRKIFHSNESYAPAKCKI--CNQSFALFSNLNAHYNK 710
C C K Y+ L+ H + H+ E P C C FA L HY K
Sbjct: 6 HTCDYAGC---GKTYTKSSHLKAHLRT-HTGEK--PYHCDWDGCGWKFARSDELTRHYRK 59
Query: 711 HLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
H R F C C F+ +L H +
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 37.1 bits (87), Expect = 0.002
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
H R H RPF C C+ F++ L H + H
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 36.7 bits (86), Expect = 0.003
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 742 QHEGKYVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKF-----LT 794
+ + C+Y CGK+Y ++H+ H+ +G ++ + C+ KF LT
Sbjct: 1 KRTATHTCDYAGCGKTYTK----SSHLKAHLRTHTG--EKPYHCDWDGCGWKFARSDELT 54
Query: 795 RHMKTH--LIQYRCTRCNKTFKQNTSFIRHSLKHF 827
RH + H ++C +C++ F ++ H +HF
Sbjct: 55 RHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 36.7 bits (86), Expect = 0.003
Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 35/121 (28%)
Query: 594 HGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK--CNYSARVLSNKLAHERIYH 651
C T+ + S L H R H KPY C C +
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWK--------------- 46
Query: 652 QDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKH 711
F+ L RH + H+ P +C+ C+++F+ +L H +H
Sbjct: 47 -------------FARS--DELTRHYRK-HTGHR--PFQCQKCDRAFSRSDHLALHMKRH 88
Query: 712 L 712
Sbjct: 89 F 89
Score = 36.7 bits (86), Expect = 0.003
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 710 KHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNY--CGKSYIDKRDYTNH 765
K C +T S+L H R H G+ Y C++ CG + + T H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRT----HTGEKPYHCDWDGCGWKFARSDELTRH 56
Query: 766 VSVHM-ERKSGYTQRCHKCNATFRIKKFLTRHMKTHL 801
H R +C KC+ F L HMK H
Sbjct: 57 YRKHTGHRPF----QCQKCDRAFSRSDHLALHMKRHF 89
Score = 36.4 bits (85), Expect = 0.004
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 445 HSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKP-VC--EICSQTMAHNQVLQRHMTLH 501
+ T CGK +TK ++ H++ H KP C + C A + L RH H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 502 FTQNKHPCNRCNASFSSMVQLSCHQIR 528
C +C+ +FS L+ H R
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 29.0 bits (66), Expect = 1.7
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHM 44
R + C C + FS+ L H+ H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRHF 89
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 64.4 bits (158), Expect = 4e-13
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 30/101 (29%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYS 288
K +K+ S L +H+ I H+ RP+ C+YC F +
Sbjct: 9 KSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRF-------------------------HQK 42
Query: 289 SSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
S ++ +H IHT EKP C +C K F Q ++ H R
Sbjct: 43 S----DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 62.1 bits (152), Expect = 3e-12
Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 49/130 (37%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLC 205
+ CK CG +F S+ H IH+D +PY C CG+ F
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFH--------------------- 40
Query: 206 NFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHH 265
Q S+++ H I HTGE+P +C+ C AF + +
Sbjct: 41 ---------------------------QKSDMKKHTFI-HTGEKPHKCQVCGKAFSQSSN 72
Query: 266 LETHVNLHLG 275
L TH H G
Sbjct: 73 LITHSRKHTG 82
Score = 59.0 bits (144), Expect = 3e-11
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCL 177
+ C C + HL IH + +PY C+YCG F KS H IHT KP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 178 TCGQSFRTFNLMKRHNLCDHQ 198
CG++F + NL H
Sbjct: 62 VCGKAFS-----QSSNLITHS 77
Score = 54.4 bits (132), Expect = 2e-09
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRI 139
+ C C K++K H H YPC +C R + K H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP----------YPCQYCGKRFHQKSDMKKHTFI 51
Query: 140 HLNIKPYACKYCGNAFAHKSSRDAHQNIHT 169
H KP+ C+ CG AF+ S+ H HT
Sbjct: 52 HTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 52.4 bits (127), Expect = 7e-09
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
+ + H+ IH RP+ C C F Q S + H IH KP+KC C + SN
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Query: 644 LAHERI 649
+ H R
Sbjct: 74 ITHSRK 79
Score = 51.3 bits (124), Expect = 2e-08
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 279 SFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
SF+C +C S L H IH+D +P+ C C K+F QK +K H I
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
Score = 49.0 bits (118), Expect = 1e-07
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINC 456
C +CG +FK + H+ H+ +PY C+ C + ++ H H+ C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 457 GKYFTKLEYMIKHMKRH 473
GK F++ +I H ++H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 43.2 bits (103), Expect = 1e-05
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 20 TYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNKKI 78
++ C +C K F + +TL H+ IH T+P C YCG+ F + H HT K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH--TFIHTGEKP- 57
Query: 79 YYKCDKCNKTYKSKYKFERHKNTH 102
+KC C K + H H
Sbjct: 58 -HKCQVCGKAFSQSSNLITHSRKH 80
Score = 42.4 bits (101), Expect = 2e-05
Identities = 29/114 (25%), Positives = 38/114 (33%), Gaps = 39/114 (34%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKS 774
F C C +F S L H I H Y C YCGK
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI----HSDTRPYPCQYCGK-------------------- 37
Query: 775 GYTQRCHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
F K + +H H + ++C C K F Q+++ I HS KH
Sbjct: 38 -----------RFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 42.0 bits (100), Expect = 3e-05
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 33/112 (29%)
Query: 600 FSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCH 659
F C +C +F + STL H IH + +PY C C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKR----------------------- 38
Query: 660 INNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKH 711
F K S +++H I H+ E P KC++C ++F+ SNL H KH
Sbjct: 39 -----FHQK--SDMKKHTFI-HTGEK--PHKCQVCGKAFSQSSNLITHSRKH 80
Score = 38.6 bits (91), Expect = 5e-04
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
K++ H IH ++P C +C F+Q S L+ H R H
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 37.4 bits (88), Expect = 0.001
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 671 SCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLS 730
S L H I HS+ P C+ C + F S++ H H + C C F+ S
Sbjct: 15 STLSTHLLI-HSDTR--PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS 71
Query: 731 NLIRHRRI 738
NLI H R
Sbjct: 72 NLITHSRK 79
Score = 30.1 bits (69), Expect = 0.58
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HT 73
R Y C C K+F + + +K+H IH +P +C CG+ F L H R HT
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH--SRKHT 81
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 64.4 bits (158), Expect = 5e-13
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 40/108 (37%)
Query: 228 IKPYK---------QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTK 278
+KP++ + +L +HIR HTGE+PF C C F
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDE------------- 46
Query: 279 SFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNH 326
+H I P E+ + H++N
Sbjct: 47 ----------------RKRHRDIQH-ILPILEDKVEELLSKNYHLENE 77
Score = 61.4 bits (150), Expect = 6e-12
Identities = 21/164 (12%), Positives = 34/164 (20%), Gaps = 76/164 (46%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRN 202
+KP+ C+ C F+ H HT KP+ C CG+ F
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA------------------ 42
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKE 262
+ + H I P +
Sbjct: 43 ------------------------------RSDERKRHRDI-QH-ILPILEDKVEELLSK 70
Query: 263 KHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
+HLE + + E+
Sbjct: 71 NYHLENE--------------------------VARLKKLVGER 88
Score = 56.0 bits (136), Expect = 4e-10
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
K F C +C + S +L H R HT EKPF C +C ++F + K H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 51.3 bits (124), Expect = 2e-08
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
+ H+R H ++PF+C +C FA+ H I + P K
Sbjct: 18 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKV 64
Score = 51.0 bits (123), Expect = 3e-08
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLK-FPCIN 455
C +C F + + H+R HTG KP+ C C +A + H +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ--HILPILEDK 63
Query: 456 CGKYFTKLEYMIKHMKRH 473
+ +K ++ + R
Sbjct: 64 VEELLSKNYHLENEVARL 81
Score = 47.9 bits (115), Expect = 3e-07
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKY 747
P +C+IC ++F+ +L H H + F+C C F RHR I QH
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI---QHILPI 59
Query: 748 VCNYCGKSYIDKRDYTNHVS 767
+ + + N V+
Sbjct: 60 LEDKVEELLSKNYHLENEVA 79
Score = 47.9 bits (115), Expect = 3e-07
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 21 YHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYY 80
+ C +C + FS+ L H+ H +P C CG+ F H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHILP---I 59
Query: 81 KCDKCNKTYKSKYKFERHK 99
DK + Y E
Sbjct: 60 LEDKVEELLSKNYHLENEV 78
Score = 46.3 bits (111), Expect = 1e-06
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+PF C +C F++ L H R H KP+ C C + H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 45.2 bits (108), Expect = 3e-06
Identities = 17/112 (15%), Positives = 30/112 (26%), Gaps = 38/112 (33%)
Query: 714 VRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHME 771
++ F C C NF+ +L H R H G+ + C+ CG+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRK---------------- 40
Query: 772 RKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQ-YRCTRCNKTFKQNTSFIRH 822
+ + RH I + + +N
Sbjct: 41 ----FARSDE-----------RKRHRDIQHILPILEDKVEELLSKNYHLENE 77
Score = 42.9 bits (102), Expect = 2e-05
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTN-KP-VCEICSQTMAHNQVLQRHMTLHFTQNKHP 508
F C C + F++ +++ H++ H T KP C+IC + A + +RH +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 509 CNRCNASFSSMVQLSCHQ--IRAH 530
++ S L ++
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKL 84
Score = 42.9 bits (102), Expect = 2e-05
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 421 KPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKP- 479
KP+QC+ C +++ L H TH+ F C CG+ F + + +H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ--HILPI 59
Query: 480 VCEICSQTMAHNQVLQRHMT 499
+ + + ++ N L+ +
Sbjct: 60 LEDKVEELLSKNYHLENEVA 79
Score = 38.6 bits (91), Expect = 5e-04
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHT 73
E+ + C +C ++F++ KRH I P+ + L + +
Sbjct: 29 EKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKK 83
Score = 37.5 bits (88), Expect = 0.002
Identities = 19/125 (15%), Positives = 28/125 (22%), Gaps = 45/125 (36%)
Query: 48 PVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTENS 107
P +C C + F L HIR HT K + CD C + + +
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRT-HTGEKP--FACDICGRKF--------------ARSD 45
Query: 108 EYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQN- 166
K H I +I P + +
Sbjct: 46 ------------------------ERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVAR 80
Query: 167 --IHT 169
Sbjct: 81 LKKLV 85
Score = 36.7 bits (86), Expect = 0.003
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 49/126 (38%)
Query: 306 KPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRH-------CEVC 358
KPF C +C + F + H+ H+R H C++C
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT------------------------HTGEKPFACDIC 37
Query: 359 DKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNY---NYFVHMR 415
+ F + +E K H H P + + NY N ++
Sbjct: 38 GRK-----------F--ARSDERKRHRDIQH--ILPILEDKVEELLSKNYHLENEVARLK 82
Query: 416 RHTGFK 421
+ G +
Sbjct: 83 KLVGER 88
Score = 33.6 bits (78), Expect = 0.034
Identities = 5/42 (11%), Positives = 8/42 (19%), Gaps = 4/42 (9%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHE---RIH 622
H I P ++ L N +
Sbjct: 44 SDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 32.9 bits (76), Expect = 0.058
Identities = 16/112 (14%), Positives = 25/112 (22%), Gaps = 34/112 (30%)
Query: 626 KPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNES 685
KP++C C + + H R H+ E
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-------------------------------HTGEK 30
Query: 686 YAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRR 737
P C IC + FA H + + +L
Sbjct: 31 --PFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA 79
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 64.4 bits (158), Expect = 5e-13
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 30/112 (26%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ----- 198
AC+ CG F + H+ H+ KPY C CG F+ ++ + H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFK-----RKDRMSYHVRSHDG 60
Query: 199 -DVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGER 249
+ Y+C C K + + +L HI+ H+G
Sbjct: 61 SVGKPYICQSCGKG-------------------FSRPDHLNGHIKQVHSGPS 93
Score = 63.7 bits (156), Expect = 1e-12
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 229 KPYK---------QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLG-KTK 278
+ +L H H+GE+P+ C C FK K + HV H G K
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 279 SFNCNVCNYSSSLKWNLIQHY-RIHTDEK 306
+ C C S +L H ++H+
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 59.4 bits (145), Expect = 3e-11
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHT--DLKPYL 175
C C R YH H H KPY+C CG F K H H KPY+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 176 CLTCGQSFR 184
C +CG+ F
Sbjct: 68 CQSCGKGFS 76
Score = 55.6 bits (135), Expect = 8e-10
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFP- 452
C +CG F+ Y+ H H+G KPY C C + + +H +H ++ P
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 453 -CINCGKYFTKLEYMIKHMKR 472
C +CGK F++ +++ H+K+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQ 87
Score = 55.2 bits (134), Expect = 1e-09
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 29/85 (34%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTD 304
+G C+ C K F +L +H H+
Sbjct: 2 SSGSSGVACEICG--------------------KIFRD------VY---HLNRHKLSHSG 32
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP++C +C +F++K + H+R
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRS 57
Score = 53.3 bits (129), Expect = 4e-09
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHD--NHKPYKCTKCNYSARVLS 641
+ N H H ++P+SC +C F + + H R HD KPY C C
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79
Query: 642 NKLAHERIYH 651
+ H + H
Sbjct: 80 HLNGHIKQVH 89
Score = 50.6 bits (122), Expect = 4e-08
Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 31/109 (28%)
Query: 599 PFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKC 658
+C +C F + L H+ H KPY C C FK
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLR-------------------FKR 47
Query: 659 HINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAH 707
+ H + H P C+ C + F+ +LN H
Sbjct: 48 K-----------DRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 44.8 bits (107), Expect = 5e-06
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 417 HTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHF-N 475
+G C+ C + + L H+++HS + C CG F + + M H++ H +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 476 TNKP-VCEICSQTMAHNQVLQRHM 498
KP +C+ C + + L H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHI 85
Score = 43.2 bits (103), Expect = 2e-05
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 747 YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH----LI 802
C CGK + D H H K Y+ C C F+ K ++ H+++H
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP-YS--CPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 803 QYRCTRCNKTFKQNTSFIRH 822
Y C C K F + H
Sbjct: 65 PYICQSCGKGFSRPDHLNGH 84
Score = 41.7 bits (99), Expect = 5e-05
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKK 77
C +C K F + L RH H +P C CG F R++ H+R H +
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVG 63
Query: 78 IYYKCDKCNKTYKSKYKFERH-KNTHVTENS 107
Y C C K + H K H +S
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 62.4 bits (152), Expect = 2e-12
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 32/90 (35%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTD 304
+G QC+ C + ++K L H R H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-----------------------------RKHAE 32
Query: 305 ---EKPFNCSLCEKQFRQKIHVKNHLRIIH 331
F C C K+F + V H H
Sbjct: 33 TVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDL---KPYLCLTCGQSFRTFNLMKRHNLCDHQDV 200
C+ CG K+S + HQ H + + C CG+ F + + H H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 201 RNYLCNFCNKT 211
+
Sbjct: 66 LLAPQESSGPS 76
Score = 49.7 bits (119), Expect = 6e-08
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDN---HKPYKCTKCNYSARVLSNKLAHERIYHQDH 654
C +C T Q ++L H+R H + C C + AH H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 655 VFKCH 659
+
Sbjct: 66 LLAPQ 70
Score = 49.7 bits (119), Expect = 6e-08
Identities = 18/103 (17%), Positives = 26/103 (25%), Gaps = 27/103 (26%)
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRHCEVCDKS 361
+ C +C RQK + H R H F CE C K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFP-------------CEFCGKR 47
Query: 362 NNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTF 404
F+ + + AH H + G +
Sbjct: 48 -----------FEKP--DSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 47.8 bits (114), Expect = 2e-07
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 417 HTGFKPYQCKTCNASYASMRVLQHHEITHSKTLK---FPCINCGKYFTKLEYMIKHMKRH 473
+G QC+ C + L H+ H++T+ FPC CGK F K + + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 474 FNTNKPVCEICS 485
+ S
Sbjct: 62 HPALLLAPQESS 73
Score = 46.2 bits (110), Expect = 8e-07
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHT---GFKPYQCKTCNASYASMRVL-QHHEITHSKTLKFP 452
C +CG T + + H R+H + C+ C + + H +H L P
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 453 CINCGK 458
+ G
Sbjct: 70 QESSGP 75
Score = 45.1 bits (107), Expect = 3e-06
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKS 774
C C ++L H+R H++ + C +CGK + H S
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 775 GYTQRC 780
Q
Sbjct: 67 LAPQES 72
Score = 44.7 bits (106), Expect = 3e-06
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKH---LKVRRFSCTNCSLNFTYLSNLIRHRRIKHS 741
+C+IC + ++LN H KH + RF C C F ++ HR H
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Score = 43.9 bits (104), Expect = 5e-06
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQ---PVRCGYCGQFFLDLGRLNAHIRQRHTS 74
C +C + +L H H +T C +CG+ F + AH + H +
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 75 NK 76
Sbjct: 65 LL 66
Score = 42.0 bits (99), Expect = 3e-05
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 584 KTNFNIHMRIH---GKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
K + N H R H F C C F + ++ H +
Sbjct: 20 KASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72
Score = 41.6 bits (98), Expect = 5e-05
Identities = 11/57 (19%), Positives = 14/57 (24%)
Query: 744 EGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH 800
C CG + K H H E + C C F + H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 41.2 bits (97), Expect = 5e-05
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRI 139
+C+ C T + K H+ H + +PC FC R AH
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-------FPCEFCGKRFEKPDSVAAHRSK 60
Query: 140 -HLNIKPYACKYCGNAFA 156
H + + G +
Sbjct: 61 SHPALLLAPQESSGPSSG 78
Score = 41.2 bits (97), Expect = 5e-05
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 48 PVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIY-YKCDKCNKTYKSKYKFERHKNTHVTEN 106
++C CG LN H R +H + C+ C K ++ H++
Sbjct: 7 GLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 107 SEYPC 111
P
Sbjct: 66 LLAPQ 70
Score = 40.1 bits (94), Expect = 1e-04
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 779 RCHKCNATFRIKKFLTRHMKTHLIQ-----YRCTRCNKTFKQNTSFIRHSLKH 826
+C C T R K L H + H + C C K F++ S H K
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 39.7 bits (93), Expect = 2e-04
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 3/70 (4%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRH--FNTNKP-VCEICSQTMAHNQVLQRHMTLHFTQNKH 507
C CG + + H ++H CE C + + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 508 PCNRCNASFS 517
+ S
Sbjct: 68 APQESSGPSS 77
Score = 32.4 bits (74), Expect = 0.086
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 625 HKPYKCTKCNYSARVLSNKLAHERIYHQDHV----FKCHINNCIFSTKFYSCLRRHRKIF 680
+C C ++ R ++ H+R H + V F C F + HR
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKP--DSVAAHRSKS 61
Query: 681 HSNESYAPAKC 691
H AP +
Sbjct: 62 HPALLLAPQES 72
Score = 31.6 bits (72), Expect = 0.16
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 481 CEICSQTMAHNQVLQRHMTLH---FTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQK 534
CEIC T L H H + PC C F ++ H+ ++H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 61.7 bits (151), Expect = 3e-12
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 30/95 (31%)
Query: 235 SNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWN 294
+ H + ++P++C C +F+ K +L
Sbjct: 3 HHHHHHSHM-THSDKPYKCDRCQASFRYKGNL---------------------------- 33
Query: 295 LIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
H +HT EKP+ C++C QF + ++K H RI
Sbjct: 34 -ASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 59.4 bits (145), Expect = 2e-11
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKR 191
H H + + KPY C C +F +K + +H+ +HT KPY C CG F +
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN-----RP 58
Query: 192 HNLCDHQ 198
NL H
Sbjct: 59 ANLKTHT 65
Score = 52.5 bits (127), Expect = 5e-09
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 586 NFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLA 645
+ + H + D+P+ C C +F L +H+ +H KPY+C C +N
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 646 HERI 649
H RI
Sbjct: 64 HTRI 67
Score = 50.1 bits (121), Expect = 4e-08
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
Y C C RY+ + +H +H KPY C CG F ++ H IH+ KPY
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 47.8 bits (115), Expect = 2e-07
Identities = 31/150 (20%), Positives = 40/150 (26%), Gaps = 78/150 (52%)
Query: 159 SSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTL 218
H ++ KPY C C SFR
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFR---------------------------------- 28
Query: 219 DNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTK 278
NL SH + HTGE+P++C C F
Sbjct: 29 --------------YKGNLASHKTV-HTGEKPYRCNICGAQF------------------ 55
Query: 279 SFNCNVCNYSSSLKWNLIQHYRIHTDEKPF 308
N + NL H RIH+ EKP+
Sbjct: 56 -------NRPA----NLKTHTRIHSGEKPY 74
Score = 44.0 bits (105), Expect = 5e-06
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMK 471
H KPY+C C AS+ L H+ H+ + C CG F + + H +
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Query: 472 RH 473
H
Sbjct: 67 IH 68
Score = 42.8 bits (102), Expect = 1e-05
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPY 628
K N H +H ++P+ C +C F + + L H RIH KPY
Sbjct: 30 KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 41.3 bits (98), Expect = 5e-05
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 381 LKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQH 440
H H K P C C +F+ N H HTG KPY+C C A + L+
Sbjct: 5 HHHHSHMTHSDK-PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 441 HEITH 445
H H
Sbjct: 64 HTRIH 68
Score = 36.3 bits (85), Expect = 0.003
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 33/99 (33%)
Query: 613 STLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSC 672
+H + + KPYKC +C S F K
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQAS----------------------------FRYK--GN 32
Query: 673 LRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKH 711
L H+ + H+ E P +C IC F +NL H H
Sbjct: 33 LASHKTV-HTGEK--PYRCNICGAQFNRPANLKTHTRIH 68
Score = 35.9 bits (84), Expect = 0.004
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 700 LFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYI 757
+ + + H + + + C C +F Y NL H+ + H G+ Y CN CG +
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV----HTGEKPYRCNICGAQFN 56
Query: 758 DKRDYTNHVSVH 769
+ H +H
Sbjct: 57 RPANLKTHTRIH 68
Score = 34.0 bits (79), Expect = 0.016
Identities = 17/97 (17%), Positives = 23/97 (23%), Gaps = 39/97 (40%)
Query: 730 SNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATF 787
+ H + Y C+ C S F
Sbjct: 3 HHHHHHSHM----THSDKPYKCDRCQAS-------------------------------F 27
Query: 788 RIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
R K L H H + YRC C F + + H
Sbjct: 28 RYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 33.6 bits (78), Expect = 0.024
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNK 76
++ Y C C F L H +H +P RC CG F L H R H+ K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH--TRIHSGEK 72
Score = 30.1 bits (69), Expect = 0.37
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPY 423
C +CG F N H R H+G KPY
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGEKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 61.7 bits (151), Expect = 3e-12
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 30/97 (30%)
Query: 233 QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLK 292
+ R ++C C KSF+ SS
Sbjct: 2 SSGSSGRSEWQ-QRERRRYKCDECG--------------------KSFSH------SS-- 32
Query: 293 WNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+L +H R HT EKP+ C C K F Q+ H+ H R+
Sbjct: 33 -DLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 59.0 bits (144), Expect = 2e-11
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKR 191
+ Y C CG +F+H S H+ HT KPY C CG++F +R
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI-----QR 59
Query: 192 HNLCDHQ 198
+L H
Sbjct: 60 SHLIGHH 66
Score = 52.4 bits (127), Expect = 5e-09
Identities = 28/153 (18%), Positives = 40/153 (26%), Gaps = 78/153 (50%)
Query: 156 AHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDR 215
S + + + Y C CG+SF
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFS------------------------------- 29
Query: 216 KTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLG 275
S+L H R HTGE+P++C C AF ++ H
Sbjct: 30 -----------------HSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSH---------- 61
Query: 276 KTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPF 308
LI H+R+HT P
Sbjct: 62 -------------------LIGHHRVHTGSGPS 75
Score = 52.1 bits (126), Expect = 8e-09
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 583 SKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSN 642
S + + R + C C +F+ S L H R H KPYKC +C + S+
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 643 KLAHERI 649
+ H R+
Sbjct: 62 LIGHHRV 68
Score = 48.2 bits (116), Expect = 2e-07
Identities = 19/57 (33%), Positives = 22/57 (38%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
Y C C + H R H KPY C CG AF +S H +HT P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 42.4 bits (101), Expect = 2e-05
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYK 629
++ + H R H ++P+ C C F Q S L+ H R+H P
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 39.3 bits (93), Expect = 2e-04
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
C CG +F + + H R HTG KPY+C C ++ L H H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 39.0 bits (92), Expect = 4e-04
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKR 472
+ + Y+C C S++ L H TH+ + C CGK F + ++I H +
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Query: 473 H 473
H
Sbjct: 69 H 69
Score = 37.8 bits (89), Expect = 8e-04
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 671 SCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLS 730
R KC C +SF+ S+L+ H H + + C C F S
Sbjct: 4 GSSGRSEWQ-QRERR--RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 731 NLIRHRRI 738
+LI H R+
Sbjct: 61 HLIGHHRV 68
Score = 37.4 bits (88), Expect = 0.001
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 702 SNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDK 759
+ + + RR+ C C +F++ S+L +HRR H G+ Y C+ CGK++I +
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT----HTGEKPYKCDECGKAFIQR 59
Query: 760 RDYTNHVSVH 769
H VH
Sbjct: 60 SHLIGHHRVH 69
Score = 36.3 bits (85), Expect = 0.003
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 33/102 (32%)
Query: 610 AQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKF 669
+ E + YKC +C S FS
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKS----------------------------FSHS- 31
Query: 670 YSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKH 711
S L +HR+ H+ E P KC C ++F S+L H+ H
Sbjct: 32 -SDLSKHRRT-HTGEK--PYKCDECGKAFIQRSHLIGHHRVH 69
Score = 36.3 bits (85), Expect = 0.003
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 39/97 (40%)
Query: 730 SNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATF 787
+ R + Y C+ CGKS F
Sbjct: 4 GSSGRSEWQ----QRERRRYKCDECGKS-------------------------------F 28
Query: 788 RIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
L++H +TH + Y+C C K F Q + I H
Sbjct: 29 SHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 30.5 bits (70), Expect = 0.35
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HT 73
R Y C C K FS + L +H H +P +C CG+ F+ L H R HT
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH--HRVHT 70
Score = 27.8 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPY 423
C CG F + H R HTG P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 59.8 bits (146), Expect = 1e-11
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 30/93 (32%)
Query: 237 LQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLI 296
I H+GE+P+ C C AF S L+
Sbjct: 2 SSGSSGI-HSGEKPYGCVECGKAF-----------------------------SRSSILV 31
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
QH R+HT EKP+ C C K F Q + NH RI
Sbjct: 32 QHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 58.6 bits (143), Expect = 4e-11
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLC 195
IH KPY C CG AF+ S HQ +HT KPY CL CG++F + L
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS-----QNSGLI 59
Query: 196 DHQ 198
+HQ
Sbjct: 60 NHQ 62
Score = 54.0 bits (131), Expect = 2e-09
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
IH ++P+ C+ C F++ S L+ H+R+H KPYKC +C + S + H+RI
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 52.1 bits (126), Expect = 8e-09
Identities = 20/57 (35%), Positives = 22/57 (38%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
Y C C H R+H KPY C CG AF+ S HQ IHT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 50.5 bits (122), Expect = 2e-08
Identities = 30/145 (20%), Positives = 41/145 (28%), Gaps = 78/145 (53%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
IH+ KPY C+ CG++F
Sbjct: 5 SSGIHSGEKPYGCVECGKAFS--------------------------------------- 25
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCN 283
+ S L H R+ HTGE+P++C C AF
Sbjct: 26 ---------RSSILVQHQRV-HTGEKPYKCLECGKAF----------------------- 52
Query: 284 VCNYSSSLKWNLIQHYRIHTDEKPF 308
+ +S LI H RIHT
Sbjct: 53 --SQNS----GLINHQRIHTSGPSS 71
Score = 43.6 bits (104), Expect = 7e-06
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPY 628
+ H R+H ++P+ CL C F+Q S L+NH+RIH +
Sbjct: 27 SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 40.1 bits (95), Expect = 1e-04
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKR 472
H+G KPY C C +++ +L H+ H+ + C+ CGK F++ +I H +
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 473 H 473
H
Sbjct: 65 H 65
Score = 39.8 bits (94), Expect = 2e-04
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
P C CG F + H R HTG KPY+C C +++ L +H+ H+
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 39.4 bits (93), Expect = 2e-04
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 673 LRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNL 732
I HS E P C C ++F+ S L H H + + C C F+ S L
Sbjct: 2 SSGSSGI-HSGEK--PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58
Query: 733 IRHRRI 738
I H+RI
Sbjct: 59 INHQRI 64
Score = 36.7 bits (86), Expect = 0.002
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 780 CHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
C +C F L +H + H + Y+C C K F QN+ I H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 35.9 bits (84), Expect = 0.003
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 732 LIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRI 789
I H G+ Y C CGK++ H VH K Y +C +C F
Sbjct: 2 SSGSSGI----HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-Y--KCLECGKAFSQ 54
Query: 790 KKFLTRHMKTH 800
L H + H
Sbjct: 55 NSGLINHQRIH 65
Score = 35.5 bits (83), Expect = 0.005
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 615 LLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNC--IFSTKFYSC 672
IH KPY C +C + S + H+R++ + +KC C FS S
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQN--SG 57
Query: 673 LRRHRKIFHSNE 684
L H++I H++
Sbjct: 58 LINHQRI-HTSG 68
Score = 34.8 bits (81), Expect = 0.009
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVH 769
+ C C F+ S L++H+R+ H G+ Y C CGK++ NH +H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRV----HTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 33.6 bits (78), Expect = 0.025
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNK 76
E+ Y C C K FS+ + L +H +H +P +C CG+ F L H QR HTS
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH--QRIHTSGP 69
Score = 32.1 bits (74), Expect = 0.083
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 36 LKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQR-HTSNKKIYYKCDKCNKTYKSKYK 94
GIH +P C CG+ F L H QR HT K YKC +C K +
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH--QRVHTGEKP--YKCLECGKAFSQNSG 57
Query: 95 FERHKNTH 102
H+ H
Sbjct: 58 LINHQRIH 65
Score = 29.7 bits (68), Expect = 0.56
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPY 423
C CG F N H R HT
Sbjct: 45 CLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 29.0 bits (66), Expect = 1.0
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 793 LTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ H + Y C C K F +++ ++H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 59.5 bits (145), Expect = 2e-11
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 31/91 (34%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCN 286
+ + L H + H ++ F C C +F K H
Sbjct: 17 RIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKH--------------------- 55
Query: 287 YSSSLKWNLIQHYRIHTDEKPFNCSLCEKQF 317
L +H ++H+D + + C
Sbjct: 56 --------LKEHMKLHSDTRDYICEFSGPSS 78
Score = 54.9 bits (133), Expect = 9e-10
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 118 YPCSF--CAYRGRYRYHFKAHLRI-HLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLK 172
PC F C R + H + H++ K ++C CG +F K H +H+D +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 173 PYLCLTCGQSF 183
Y+C G S
Sbjct: 68 DYICEFSGPSS 78
Score = 48.3 bits (116), Expect = 2e-07
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 584 KTNFNIHMRI-HGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
+ N H + H + FSC C +F L H ++H + + Y C
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 38.7 bits (91), Expect = 4e-04
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 381 LKAHIKSHHFPKQPSIC--AVCGDTFKTNYNYFVHMRRHTGFKPYQCKTC 428
L H K H ++ C CG +F + HM+ H+ + Y C+
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 717 FSCTN--CSLNFTYLSNLIRHRRIKHSQHEGKYVCNY--CGKSYIDKRDYTNHVSVH 769
C C F+ L H++ +H H+ + C CGKS+ K+ H+ +H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHI-HQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 36.0 bits (84), Expect = 0.004
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 302 HTDEKPFNCSL--CEKQFRQKIHVKNHLRIIH 331
+ C C + F + ++ +H + H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 35.6 bits (83), Expect = 0.006
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 656 FKCHINNC--IFSTKFYSCLRRHRKIFHSNESYAPAKCK--ICNQSFALFSNLNAHYNKH 711
C C IFS + L H+K H ++ C C +SF +L H H
Sbjct: 8 MPCDFPGCGRIFSNR--QYLNHHKKYQHIHQK--SFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 712 LKVRRFSCTNC 722
R + C
Sbjct: 64 SDTRDYICEFS 74
Score = 34.1 bits (79), Expect = 0.021
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 594 HGKDRPFSCLL--CNNTFAQLSTLLNHERI-HDNHKPYKCT--KCNYSARVLSNKLAHER 648
C C F+ L +H++ H + K + C C S + H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 649 I 649
+
Sbjct: 62 L 62
Score = 33.3 bits (77), Expect = 0.031
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 42/104 (40%)
Query: 54 CGQFFLDLGRLNAHIRQRHTSNKKIYYKCD--KCNKTYKSKYKFERHKNTHVTENSEYPC 111
CG+ F + LN H + +H K + C C K++ K
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKS--FSCPEPACGKSFNFK------------------- 53
Query: 112 IYCRNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAF 155
H K H+++H + + Y C++ G +
Sbjct: 54 -------------------KHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 32.9 bits (76), Expect = 0.055
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 18 ERTYHCPL--CSKQFSKLTTLKRHVGI-HMKTQPVRC--GYCGQFFLDLGRLNAHIRQRH 72
C C + FS L H H+ + C CG+ F L H++ H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LH 63
Query: 73 TSNKKIYYKCDKCNKTY 89
+ + Y C+ +
Sbjct: 64 SDTRD--YICEFSGPSS 78
Score = 30.6 bits (70), Expect = 0.31
Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 29/103 (28%)
Query: 417 HTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNT 476
+G C CG+ F+ +Y+ H K
Sbjct: 2 SSGSSGMPC--------------------------DFPGCGRIFSNRQYLNHHKKYQHIH 35
Query: 477 NKP-VCE--ICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASF 516
K C C ++ + L+ HM LH + C S
Sbjct: 36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 28.3 bits (64), Expect = 2.2
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTF 609
K + HM++H R + C +
Sbjct: 53 KKHLKEHMKLHSDTRDYICEFSGPSS 78
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 60.3 bits (147), Expect = 2e-11
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 32/103 (31%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCN 286
K Y + S+L++H+R HTGE+P++C + C++ F L H
Sbjct: 25 KVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRH----------------- 66
Query: 287 YSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
YR HT KPF C +C + F + H+ H++
Sbjct: 67 ------------YRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 54.6 bits (132), Expect = 2e-09
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 374 KTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC--KTCNAS 431
+ + H+ C + + + H+R HTG KPY+C + C+
Sbjct: 2 SSGSSGPDLEKRRIHYCDY-----PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56
Query: 432 YASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFN 475
+A L H H+ F C C + F++ +++ HMKRH N
Sbjct: 57 FARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 50.3 bits (121), Expect = 6e-08
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 132 HFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSF-RTFNL 188
H KAHLR H KPY C + C FA H HT KP+ C C +SF R+ +L
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 189 ---MKRH 192
MKRH
Sbjct: 92 ALHMKRH 98
Score = 46.5 bits (111), Expect = 1e-06
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 13 HESQDERTYHC--PLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHI 68
+ + R ++C P C+K ++K + LK H+ H +P +C + C F L H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 69 RQRHTSNKKIYYKCDKCNKTYKSKYKFERHKNTH 102
R +HT K ++C CN+++ H H
Sbjct: 68 R-KHTGAKP--FQCGVCNRSFSRSDHLALHMKRH 98
Score = 45.7 bits (109), Expect = 3e-06
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 589 IHMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
H+R H ++P+ C C+ FA+ L H R H KP++C CN
Sbjct: 35 AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Score = 41.8 bits (99), Expect = 7e-05
Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 69 RQRHTSNKKIYYKCDK--CNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYR 126
K+ + CD C K Y + H TH E Y C + C +R
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTW-------EGCDWR 56
Query: 127 GRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTD 170
H R H KP+ C C +F+ H H +
Sbjct: 57 FARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 39.1 bits (92), Expect = 5e-04
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 18 ERTYHC--PLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTS 74
E+ Y C C +F++ L RH H +P +CG C + F L H++ RH +
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK-RHQN 100
Score = 38.8 bits (91), Expect = 7e-04
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 17/103 (16%)
Query: 641 SNKLAHERIYHQDHVFKCHINNCIFSTKFYSC---LRRHRKIFHSNESYAPAKCKI--CN 695
L RI+ C C TK Y+ L+ H + H+ E P KC C+
Sbjct: 7 GPDLEKRRIH------YCDYPGC---TKVYTKSSHLKAHLRT-HTGEK--PYKCTWEGCD 54
Query: 696 QSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
FA L HY KH + F C C+ +F+ +L H +
Sbjct: 55 WRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 37.6 bits (88), Expect = 0.002
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 144 KPYACK--YCGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFNLMKRHNLCDHQD 199
+ + C C + S AH HT KPY C C F + + RH H
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH-YRKHTG 72
Query: 200 VRNYLCNFCNKTYKDRKTLDNHILGHVD 227
+ + C CN+++ L H+ H +
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDN 624
H R H +PF C +CN +F++ L H + H N
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 36.5 bits (85), Expect = 0.004
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 441 HEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKP-VC--EICSQTMAHNQVLQRH 497
++ + C K +TK ++ H++ H KP C E C A + L RH
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 498 MTLHFTQNKHPCNRCNASFSSMVQLSCHQIR 528
H C CN SFS L+ H R
Sbjct: 67 YRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 35.3 bits (82), Expect = 0.010
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 608 TFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFST 667
+ L RIH P C S+ AH R + + +KC C +
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 668 KFYSCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKH 711
L RH + H+ P +C +CN+SF+ +L H +H
Sbjct: 58 ARSDELTRHYRK-HTGAK--PFQCGVCNRSFSRSDHLALHMKRH 98
Score = 34.5 bits (80), Expect = 0.019
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 726 FTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNA 785
+ RRI + + G C K Y ++H+ H+ +G ++ +KC
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG------CTKVYTK----SSHLKAHLRTHTG--EKPYKCTW 50
Query: 786 TFRIKKF-----LTRHMKTH--LIQYRCTRCNKTFKQNTSFIRHSLKHFN 828
+F LTRH + H ++C CN++F ++ H +H N
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 31.1 bits (71), Expect = 0.39
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 46/104 (44%)
Query: 294 NLIQHYRIHTDEKPFNCSL--CEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNI 351
+L H R HT EKP+ C+ C+ +F + + H R
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK---------------------- 69
Query: 352 FRH-------CEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSH 388
H C VC++S F S + L H+K H
Sbjct: 70 --HTGAKPFQCGVCNRS-----------F--SRSDHLALHMKRH 98
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 57.6 bits (140), Expect = 8e-11
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 27/89 (30%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTD 304
GE ++CK C+ + + H +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRH---------------------------YVTSHKRN 37
Query: 305 EKPFNCSLCEKQFRQKIHVKNHLRIIHNM 333
K + C C K+F +K ++ H++IIH +
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 49.1 bits (118), Expect = 6e-08
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 592 RIHGKDRPFSCLLCNNTFAQLSTLLNHERI--HDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ + C +C+ + +S H N K Y C C N AH +I
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 650 YHQ 652
H+
Sbjct: 63 IHK 65
Score = 47.9 bits (115), Expect = 2e-07
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 229 KPYKQLSNLQSHIRIS-HTGERPFQCKYCNYAFKEKHHLETHVNLH 273
+ Y +SN H S + + C +C F K ++ HV +
Sbjct: 18 RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 47.2 bits (113), Expect = 3e-07
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 415 RRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLK--FPCINCGKYFTKLEYMIKHMKR 472
G Y+CK C+ Y + H +T K +PC C K FT+ + M H+K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 473 H 473
Sbjct: 63 I 63
Score = 46.4 bits (111), Expect = 5e-07
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQ--NIHTDLKPYLCLTCGQSFRTFNLMKRH 192
Y CK C + H S+ H + ++K Y C C + F + M H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Score = 44.5 bits (106), Expect = 3e-06
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNF----CDHCFK 341
E + C +C + + + H H N C CFK
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFK 48
Score = 43.7 bits (104), Expect = 5e-06
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 688 PAKCKICNQSFALFSNLNAHY--NKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKH 740
+CK+C++ + SN HY + V+ + C C FT N+ H +I H
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 42.5 bits (101), Expect = 1e-05
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVH 769
+ C CS +T++SN RH H ++ Y C +C K + K + T HV +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 41.8 bits (99), Expect = 3e-05
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRI--HLNIKPYACKYCGNAFAHKSSRDAHQNIHTDL 171
Y C C+ + +F H N+K Y C +C F K + AH I +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 41.4 bits (98), Expect = 3e-05
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKT--QPVRCGYCGQFFLDLGRLNAHIRQRH 72
E TY C +CS+ ++ ++ RH K + C +C + F + AH++ H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 37.9 bits (89), Expect = 6e-04
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 584 KTNFNIHMRI--HGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
+NF H + + C C F + + H +I
Sbjct: 23 ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 397 CAVCGDTFKTNYNYFVHMR--RHTGFKPYQCKTCNASYASMRVLQHHEITHSK 447
C VC + N+ H K Y C C + + H K
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 37.1 bits (87), Expect = 0.001
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 47 QPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHKNTH 102
RC C + + + H H N K Y C C K + K H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVK-VYPCPFCFKEFTRKDNMTAHVKII 63
Score = 34.8 bits (81), Expect = 0.007
Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 31/96 (32%)
Query: 619 ERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRK 678
E + Y+C C+ +SN H H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH--------------------------- 34
Query: 679 IFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKV 714
N C C + F N+ AH K+
Sbjct: 35 --KRNVK--VYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 34.5 bits (80), Expect = 0.010
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 779 RCHKCNATFRIKKFLTRHMKTHLIQ----YRCTRCNKTFKQNTSFIRHSLKH 826
RC C+ + RH T + Y C C K F + + H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 33.3 bits (77), Expect = 0.024
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMK 45
+ Y CP C K+F++ + HV I K
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 27.9 bits (63), Expect = 2.0
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 481 CEICSQTMAHNQVLQRHM-TLHFTQNK-HPCNRCNASFSSMVQLSCHQ 526
C++CS+ H RH T H K +PC C F+ ++ H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 56.9 bits (138), Expect = 2e-10
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 117 IYPCSF--CAYRGRYRYHFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLK 172
+Y C F C + K H H PY C + C F+ S H+ +H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 173 PYLCLTCGQSFRTFNLMKRH 192
+C +T+ L +H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 51.9 bits (125), Expect = 1e-08
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 28/103 (27%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYS 288
K +K+ + L+ H HT + P++C H G K F+
Sbjct: 11 KAFKKHNQLKVHQFS-HTQQLPYECP------------------HEGCDKRFSL-----P 46
Query: 289 SSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIH 331
S LK +H ++H C + H+ H
Sbjct: 47 SRLK----RHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 49.9 bits (120), Expect = 6e-08
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 400 CGDTFKTNYNYFVHMRRHTGFKPYQCK--TCNASYASMRVLQHHEITHSKTLKFPCINCG 457
CG FK + VH HT PY+C C+ ++ L+ HE H+ +C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 458 KYFTKLEYMIKHMKR 472
+KH+
Sbjct: 69 FVGKTWTLYLKHVAE 83
Score = 48.8 bits (117), Expect = 2e-07
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 589 IHMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAH 646
+H H + P+ C C+ F+ S L HE++H + K C++ + + L H
Sbjct: 21 VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 80
Query: 647 ERIYH 651
H
Sbjct: 81 VAECH 85
Score = 38.0 bits (89), Expect = 0.001
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 605 CNNTFAQLSTLLNHERIHDNHKPYKCT--KCNYSARVLSNKLAHERIYHQDHVFKCHINN 662
C F + + L H+ H PY+C C+ + S HE+++ K +
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD--S 66
Query: 663 CIFSTKFYSCLRRHRKIFH 681
C F K ++ +H H
Sbjct: 67 CSFVGKTWTLYLKHVAECH 85
Score = 35.7 bits (83), Expect = 0.005
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 22 HCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSNKKIY 79
H C K F K LK H H + P C + C + F RL H + H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPC-- 61
Query: 80 YKCDKCNKTYKSKYKFERH-KNTH 102
K D C+ K+ + +H H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 35.3 bits (82), Expect = 0.007
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 655 VFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCK--ICNQSFALFSNLNAHYNKHL 712
++ CH NC + K ++ L+ H+ H+ + P +C C++ F+L S L H H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFS-HTQQL--PYECPHEGCDKRFSLPSRLKRHEKVHA 57
Query: 713 KVRRFSCTNCSLNFTYLSNLIRHRRIKH 740
+CS + ++H H
Sbjct: 58 GYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 35.3 bits (82), Expect = 0.009
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 400 CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASY-ASMRVLQHHEITH 445
C F H + H G+ + +C+ L+H H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 33.7 bits (78), Expect = 0.029
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 18 ERTYHC--PLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRH 72
+ Y C C K+FS + LKRH +H + C H+ + H
Sbjct: 29 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 33.4 bits (77), Expect = 0.038
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 747 YVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH--LI 802
YVC++ CGK++ H H ++ Y C+ F + L RH K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 803 QYRCTRCNKTFKQNTSFIRH 822
+ C+ K T +++H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 32.2 bits (74), Expect = 0.10
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTN-KP-VC--EICSQTMAHNQVLQRHMTLHFTQNKH 507
NCGK F K + H H T P C E C + + L+RH +H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSH--TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 508 PCNRCNASFSSMVQLSCHQIRAH 530
+ C+ + H H
Sbjct: 63 KDDSCSFVGKTWTLYLKHVAECH 85
Score = 31.4 bits (72), Expect = 0.21
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 718 SCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNY--CGKSYIDKRDYTNHVSVHMERKSG 775
NC F + L H+ H+Q + Y C + C K + H VH +G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVH----AG 58
Query: 776 YT-QRCHKCNATFRIKKFLTRHMK 798
Y ++ C+ + +H+
Sbjct: 59 YPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 29.1 bits (66), Expect = 1.1
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 14/90 (15%)
Query: 80 YKCD--KCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSF--CAYRGRYRYHFKA 135
Y C C K +K + + H+ +H + Y C C R K
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQL----------PYECPHEGCDKRFSLPSRLKR 51
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQ 165
H ++H C + H
Sbjct: 52 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 57.1 bits (137), Expect = 4e-10
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 233 QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNL--HLGKT--KSFNCNVCNYS 288
S+ + + I TG F+CK C+ A+ L H+N H ++ N N +S
Sbjct: 3 SGSSGKLYGSI-FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 289 SSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLR 328
K +L++ +K C C F + H+
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 48.2 bits (114), Expect = 5e-07
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 438 LQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMK-----RHFNTNKPVCEICSQTMAHNQ 492
+ + + KF C +C + L + HM R N + +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 493 VLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQK 534
L Q C C SF S+ LS H I+ QK
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 47.8 bits (113), Expect = 6e-07
Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 5/108 (4%)
Query: 406 TNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHH-----EITHSKTLKFPCINCGKYF 460
+ + ++ TG ++CK C+A+Y ++ L H
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 461 TKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHP 508
+ +++ + C C + Q L HM K
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Score = 46.7 bits (110), Expect = 2e-06
Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 386 KSHHFPKQPSICAVCGDTFKTNYNYFVHMR-----RHTGFKPYQCKTCNASYASMRVLQH 440
S C C + T VHM R + S R L
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE 70
Query: 441 HEITHSKTLKFPCINCGKYFTKLEYMIKHMKRH 473
E C+ CG F L+ + HM +
Sbjct: 71 MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 45.9 bits (108), Expect = 3e-06
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 18/112 (16%)
Query: 159 SSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH-NLCDHQDVRNYLCNFCNKTYKDRKT 217
SS + +I T + C C ++ T + H N H N+ + N +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 218 LDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETH 269
+ + ++ +C YC ++F+ L H
Sbjct: 65 KRSLLEMEG-----------------KEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 45.5 bits (107), Expect = 5e-06
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 7/100 (7%)
Query: 582 DSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERI-----HDNHKPYKCTKCNYS 636
S ++ ++ I F C C+ + L L H DNH+ +S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 637 ARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRH 676
+ L E V KC F + L H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQD--LSVH 99
Score = 44.0 bits (103), Expect = 1e-05
Identities = 15/99 (15%), Positives = 33/99 (33%)
Query: 702 SNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRD 761
S+ + + +F C +CS + L L H + + + K
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 762 YTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH 800
+ + + + + +C C +F + L+ HM
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 43.6 bits (102), Expect = 2e-05
Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 28/126 (22%)
Query: 294 NLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRII-HNMNFCDHCFKFVGPEQELNIF 352
+ + I T F C C + + + H+ H +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN----------- 54
Query: 353 RHCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFV 412
+ L ++ C CG +F++ + V
Sbjct: 55 ---------------NNPKRWSKPRKRSLLEMEGKED-AQKVLKCMYCGHSFESLQDLSV 98
Query: 413 HMRRHT 418
HM +
Sbjct: 99 HMIKTK 104
Score = 43.2 bits (101), Expect = 3e-05
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
Query: 127 GRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNI-----HTDLKPYLCLTCGQ 181
G K + I + CK C A+ H N + +
Sbjct: 1 GSSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 182 SFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNH 221
S + + C +C +++ + L H
Sbjct: 61 SKPRKRSLLEMEG-KEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 41.7 bits (97), Expect = 1e-04
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 31 SKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYK 90
S ++ K + I RC C + L L H+ + + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYR----DDNHETDNNNP 57
Query: 91 SKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLR 138
++ R ++ E E + + C +C + H+
Sbjct: 58 KRWSKPRKRSLLEMEGKEDA----QKVLKCMYCGHSFESLQDLSVHMI 101
Score = 39.7 bits (92), Expect = 5e-04
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 730 SNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSV--HMERKSGYTQRCHKCNATF 787
S+ + I K+ C C +Y + T H++ H + T + +
Sbjct: 5 SSGKLYGSIFTG--ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 788 RIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
K+ L Q +C C +F+ H +K
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 39.4 bits (91), Expect = 7e-04
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGI--HMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSN 75
+ C CS + L L H+ H + R + + +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 76 KKIYYKCDKCNKTYKSKYKFERH--KNTHVTE 105
+ KC C +++S H K H +
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 39.0 bits (90), Expect = 8e-04
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 671 SCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNAHYN--KHLKVRRFSCTNCSLNFTY 728
S + + IF + +CK C+ ++ L H N H + N +
Sbjct: 5 SSGKLYGSIFTGASKF---RCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 729 LSNLIRHRRI-KHSQHEGKYVCNYCGKSYIDKRDYTNH 765
+ + C YCG S+ +D + H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 36.3 bits (83), Expect = 0.008
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 368 CWKCGFKTSVLNELKAHIKS-HHFPKQPSICAVCG---DTFKTNYNYFVHMRRHTGFKPY 423
C C L EL H+ H+ + + + K
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 424 QCKTCNASYASMRVLQHHEITHS 446
+C C S+ S++ L H I
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTK 104
Score = 33.2 bits (75), Expect = 0.093
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 32/128 (25%)
Query: 491 NQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLKRK 550
+ + ++ +K C C+A++ ++V+L+ H +
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS-- 61
Query: 551 YHVYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLLCNNTFA 610
K + + C+ C ++F
Sbjct: 62 ------------------------------KPRKRSLLEMEGKEDAQKVLKCMYCGHSFE 91
Query: 611 QLSTLLNH 618
L L H
Sbjct: 92 SLQDLSVH 99
Score = 30.5 bits (68), Expect = 0.72
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 4 HQHEEQCMPHESQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGR 63
H +E ++ T + + +L G + ++C YCG F L
Sbjct: 38 HMNETGHYRDDN--HETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQD 95
Query: 64 LNAHIRQRHTSNKKIY 79
L+ H+ + K
Sbjct: 96 LSVHMIKTKHYQKVSG 111
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 54.0 bits (131), Expect = 9e-10
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIH 331
+SF C VC + + + +L +HYR HT+EKP+ C LC + F ++ + H + IH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 49.8 bits (120), Expect = 3e-08
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
+ + C+ C AFA + H HT+ KPY C C ++F +L+ RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 44.8 bits (107), Expect = 2e-06
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKC 633
R F C +C FA+ L H R H N KPY C C
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC 36
Score = 43.2 bits (103), Expect = 6e-06
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAH-QNIHT 169
+ C C + H K H R H N KPY C C AF + H Q IH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 42.9 bits (102), Expect = 8e-06
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETH 269
+ + + +L+ H R HT E+P+ C CN AF + L H
Sbjct: 10 RAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 39.0 bits (92), Expect = 2e-04
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYA-SMRVLQHHEITHS 446
+C VC F + H R HT KPY C CN ++ +++H + HS
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 36.3 bits (85), Expect = 0.002
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHE-RIH 622
+ + H R H ++P+ C LCN F + L+ H +IH
Sbjct: 15 QEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.4 bits (80), Expect = 0.008
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHS 741
C++C ++FA +L HY H + + C C+ FT LIRH + HS
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 34.0 bits (79), Expect = 0.011
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 421 KPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKR 472
+ + C+ C ++A L+ H +H+ +PC C + FT+ + +I+H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 34.0 bits (79), Expect = 0.013
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 19 RTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHT 73
R++ C +C++ F++ LKRH H +P CG C + F L H ++ H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 33.2 bits (77), Expect = 0.021
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNH 765
F C C+ F +L RH R H + Y C C +++ + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS----HTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.2 bits (77), Expect = 0.022
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 780 CHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHS 823
C C F ++ L RH ++H + Y C CN+ F + IRH+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 26.7 bits (60), Expect = 4.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTN-KP-VCEICSQTMAHNQVLQRHM 498
F C C + F + E++ +H + H TN KP C +C++ +L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH--TNEKPYPCGLCNRAFTRRDLLIRHA 50
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-09
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C CG AF+H+ S HQ IH+ KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C +C F+ +L H+RIH KP +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF + L H
Sbjct: 2 SSGSS-GTGEKPYECSVCGKAFSHRQSL-----------------------------SVH 31
Query: 299 YRIHTDEKPFNCS 311
RIH+ +KP S
Sbjct: 32 QRIHSGKKPSGPS 44
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ CS+C K F + + H RI
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI 34
Score = 33.6 bits (78), Expect = 0.011
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C+VCG F + VH R H+G KP +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.024
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
TG KPY+C C +++ + L H+ HS
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 31.3 bits (72), Expect = 0.080
Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG++F
Sbjct: 3 SGSSGTGEKPYECSVCGKAFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+L H RI H+G++P
Sbjct: 24 ---------HRQSLSVHQRI-HSGKKPSGP 43
Score = 29.8 bits (68), Expect = 0.31
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C+ C + + H+RI
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI 34
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-09
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C C AF+H +S HQ +H+ KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C +C F+ ++L H+R+H KP +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 42.9 bits (102), Expect = 5e-06
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF L QH
Sbjct: 2 SSGSS-GTGEKPYECDVCRKAFSHHASL-----------------------------TQH 31
Query: 299 YRIHTDEKPFNCS 311
R+H+ EKP S
Sbjct: 32 QRVHSGEKPSGPS 44
Score = 41.3 bits (98), Expect = 3e-05
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C +C K F + H R+
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRV 34
Score = 32.5 bits (75), Expect = 0.027
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
TG KPY+C C +++ L H+ HS
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 32.1 bits (74), Expect = 0.042
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C VC F + + H R H+G KP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.052
Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C C ++F
Sbjct: 3 SGSSGTGEKPYECDVCRKAFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
++L H R+ H+GE+P
Sbjct: 24 ---------HHASLTQHQRV-HSGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.12
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C C + ++ H+R+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV 34
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-09
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C CG AF+ +SS HQ IHT KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C F+ S+L H+ IH KP +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 41.7 bits (99), Expect = 1e-05
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF + L H
Sbjct: 2 SSGSS-GTGEKPYECNQCGKAFSVRSSL-----------------------------TTH 31
Query: 299 YRIHTDEKPFNCS 311
IHT +KP S
Sbjct: 32 QAIHTGKKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F + + H I
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI 34
Score = 32.1 bits (74), Expect = 0.040
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCK 426
P C CG F + H HTG KP
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 32.1 bits (74), Expect = 0.047
Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG++F
Sbjct: 3 SGSSGTGEKPYECNQCGKAFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQCK 254
S+L +H I HTG++P
Sbjct: 24 ---------VRSSLTTHQAI-HTGKKPSGPS 44
Score = 31.3 bits (72), Expect = 0.068
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C +++ L H+ H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C +C + V S+ H+ I
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI 34
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 51.8 bits (125), Expect = 4e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY CK CG +F S HQ +H+ KP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P++C C +F S LL H+R+H KP +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P+ CK C +F ++S L ++H
Sbjct: 2 SSGSS-GTGEKPYNCKECGKSF-------------------------RWASCL----LKH 31
Query: 299 YRIHTDEKPFNCS 311
R+H+ EKP S
Sbjct: 32 QRVHSGEKPSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+NC C K FR + H R+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV 34
Score = 35.2 bits (82), Expect = 0.003
Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 49/92 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+SFR
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFR-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQCK 254
S L H R+ H+GE+P
Sbjct: 24 ----------WASCLLKHQRV-HSGEKPSGPS 44
Score = 34.5 bits (80), Expect = 0.007
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCK 426
C CG +F+ H R H+G KP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.027
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY C +C S R S L H+R+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV 34
Score = 31.8 bits (73), Expect = 0.060
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
TG KPY CK C S+ L H+ HS
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 27.1 bits (61), Expect = 2.2
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y C C K+F+ + ++H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 26.8 bits (60), Expect = 3.6
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACK 149
Y C C R+ H R+H KP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 4e-09
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C C +F + SS HQ IHT KP
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C +C+ +F S+L H+RIH KP +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 42.9 bits (102), Expect = 6e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C +C K FR + H RI
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI 34
Score = 41.7 bits (99), Expect = 1e-05
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C+ +F Y S +L H
Sbjct: 2 SSGSS-GTGEKPYKCDVCHKSF-------------------------RYGS----SLTVH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C VC +F+ + VH R HTG KP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.015
Identities = 19/91 (20%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C C +SFR
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFR-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S+L H RI HTGE+P
Sbjct: 24 ----------YGSSLTVHQRI-HTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.022
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC C+ S R S+ H+RI
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI 34
Score = 30.2 bits (69), Expect = 0.23
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C+ S+ L H+ H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 5e-09
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C+ CG AF H S HQ IHT KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P++C C F S L H+RIH KP +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 7e-06
Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P+ C+ C AF L +H
Sbjct: 2 SSGSS-GTGEKPYNCEECGKAFIHDSQL-----------------------------QEH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 8e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+NC C K F ++ H RI
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI 34
Score = 32.5 bits (75), Expect = 0.032
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
P C CG F + H R HTG KP +
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.037
Identities = 19/91 (20%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG++F
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFI-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S LQ H RI HTGE+P
Sbjct: 24 ----------HDSQLQEHQRI-HTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.088
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY C+ C ++ LQ H+ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 31.0 bits (71), Expect = 0.096
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY C +C + S H+RI
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI 34
Score = 25.6 bits (57), Expect = 8.5
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y C C K F ++ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 5e-09
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG AF SS HQ +HT +P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 45.6 bits (109), Expect = 6e-07
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C+ C F S+ H+R+H +P +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 42.2 bits (100), Expect = 1e-05
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF + QH
Sbjct: 2 SSGSS-GTGEKPYKCMECGKAFGDNSSC-----------------------------TQH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT ++P S
Sbjct: 32 QRLHTGQRPSGPS 44
Score = 38.3 bits (90), Expect = 3e-04
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C C K F H R+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34
Score = 32.2 bits (74), Expect = 0.041
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F N + H R HTG +P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 32.2 bits (74), Expect = 0.044
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC +C + S+ H+R+
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34
Score = 31.0 bits (71), Expect = 0.094
Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C+ CG++F
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFG-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S+ H R+ HTG+RP
Sbjct: 24 ----------DNSSCTQHQRL-HTGQRPSGP 43
Score = 30.6 bits (70), Expect = 0.14
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C ++ H+ H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 25.6 bits (57), Expect = 7.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y+C C K F N+S +H
Sbjct: 13 YKCMECGKAFGDNSSCTQH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.4 bits (124), Expect = 6e-09
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+PY C CG AF KSS H+ HT KP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 7e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
RP+ C+ C F S+L+ H R H KP +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 44.1 bits (105), Expect = 3e-06
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG+RP++C C AFK K L I H
Sbjct: 2 SSGSS-GTGQRPYECIECGKAFKTKSSL-----------------------------ICH 31
Query: 299 YRIHTDEKPFNCS 311
R HT EKP S
Sbjct: 32 RRSHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T ++P+ C C K F+ K + H R
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS 34
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCK 426
P C CG FKT + H R HTG KP
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.015
Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T +PY C+ CG++F+
Sbjct: 3 SGSSGTGQRPYECIECGKAFK--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQCK 254
S+L H R HTGE+P
Sbjct: 24 ---------TKSSLICHRRS-HTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.038
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG +PY+C C ++ + L H +H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 30.2 bits (69), Expect = 0.21
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+PY+C +C + + S+ + H R
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS 34
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ Q Y C C K FK +S I H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 6e-09
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KP+ C+ CG +F+ S HQ IHT P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P C C +F+ S L+ H+RIH P +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 43.3 bits (103), Expect = 4e-06
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P +C+ C +F L I H
Sbjct: 2 SSGSS-GTGEKPHECRECGKSFSFNSQL-----------------------------IVH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT E P S
Sbjct: 32 QRIHTGENPSGPS 44
Score = 39.1 bits (92), Expect = 1e-04
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP C C K F + H RI
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI 34
Score = 33.3 bits (77), Expect = 0.015
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG +F N VH R HTG P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 31.4 bits (72), Expect = 0.081
Identities = 18/90 (20%), Positives = 21/90 (23%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KP+ C CG+SF
Sbjct: 3 SGSSGTGEKPHECRECGKSFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L H RI HTGE P
Sbjct: 24 ---------FNSQLIVHQRI-HTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.18
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP++C+ C S++ L H+ H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 30.2 bits (69), Expect = 0.19
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KP++C +C S S + H+RI
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI 34
Score = 26.7 bits (60), Expect = 3.2
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + + C C K+F N+ I H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 51.4 bits (124), Expect = 6e-09
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP+ C +CG +F K + HQ IHT K
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+PF C C +F L+ H+RIH K +
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 43.7 bits (104), Expect = 3e-06
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG++PF+C +C +F+ K +L + H
Sbjct: 2 SSGSS-GTGQKPFECTHCGKSFRAKGNL-----------------------------VTH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EK S
Sbjct: 32 QRIHTGEKSGPSS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T +KPF C+ C K FR K ++ H RI
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI 34
Score = 34.8 bits (81), Expect = 0.004
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KP+ C CG+SFR
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFR-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
NL +H RI HTGE+
Sbjct: 24 ----------AKGNLVTHQRI-HTGEKSGPS 43
Score = 34.4 bits (80), Expect = 0.006
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG +F+ N H R HTG K
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 33.3 bits (77), Expect = 0.015
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KP++CT C S R N + H+RI
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI 34
Score = 31.0 bits (71), Expect = 0.11
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP++C C S+ + L H+ H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 25.6 bits (57), Expect = 10.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
+ CT C K+F+ + + H
Sbjct: 13 FECTHCGKSFRAKGNLVTH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 7e-09
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C CG +F KS HQ IHT KP
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C +C +F + S L H++IH KP +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 7e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ CS+C K F +K + H +I
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI 34
Score = 41.8 bits (99), Expect = 1e-05
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C +F +K L H
Sbjct: 2 SSGSS-GTGEKPYECSICGKSFTKKSQL-----------------------------HVH 31
Query: 299 YRIHTDEKPFNCS 311
+IHT EKP S
Sbjct: 32 QQIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
P C++CG +F VH + HTG KP +
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.048
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C S+ L H+ H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 31.7 bits (73), Expect = 0.061
Identities = 18/91 (19%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG+SF
Sbjct: 3 SGSSGTGEKPYECSICGKSFT--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQCK 254
+ S L H +I HTGE+P
Sbjct: 24 ---------KKSQLHVHQQI-HTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.21
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C+ C S S H++I
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQI 34
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 7e-09
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C CG AF +SS HQ H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 6e-07
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C F S+L H+ H KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K FR + + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT 34
Score = 41.4 bits (98), Expect = 2e-05
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF+ + L H
Sbjct: 2 SSGSS-GTGEKPYKCNECGKAFRARSSL-----------------------------AIH 31
Query: 299 YRIHTDEKPFNCS 311
H+ EKP S
Sbjct: 32 QATHSGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.013
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F+ + +H H+G KP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.032
Identities = 16/90 (17%), Positives = 22/90 (24%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG++FR
Sbjct: 3 SGSSGTGEKPYKCNECGKAFR--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S+L H H+GE+P
Sbjct: 24 ---------ARSSLAIHQAT-HSGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.051
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C ++ + L H+ TH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 31.7 bits (73), Expect = 0.058
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC +C + R S+ H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT 34
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 7e-09
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG AF +S+ HQ IHT KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F S L+ H++IH KP +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 44.0 bits (105), Expect = 2e-06
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P+ C C AF +++ NLI+H
Sbjct: 2 SSGSS-GTGEKPYICAECGKAF-----------------------------TIRSNLIKH 31
Query: 299 YRIHTDEKPFNCS 311
+IHT +KP S
Sbjct: 32 QKIHTKQKPSGPS 44
Score = 41.0 bits (97), Expect = 3e-05
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F + ++ H +I
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34
Score = 34.0 bits (79), Expect = 0.009
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P ICA CG F N H + HT KP
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 33.6 bits (78), Expect = 0.013
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ + T KPY+C CG++F R NL HQ
Sbjct: 2 SSGSSGTGEKPYICAECGKAFT-----IRSNLIKHQ 32
Score = 31.7 bits (73), Expect = 0.053
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY C +C + + SN + H++I
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34
Score = 30.9 bits (71), Expect = 0.13
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY C C ++ L H+ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 26.7 bits (60), Expect = 3.2
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 20/51 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Y+C C K + R SNL H +I HT ++P
Sbjct: 13 YICAECGKAFTIR-------------------SNLIKHQKI-HTKQKPSGP 43
Score = 25.9 bits (58), Expect = 6.4
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 706 AHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCN 750
+ + + + C C FT SNLI+H++I H + +
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI----HTKQKPSGPS 44
Score = 25.9 bits (58), Expect = 6.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C K F ++ I+H
Sbjct: 13 YICAECGKAFTIRSNLIKH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 7e-09
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG AF +S+ HQ IHT KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
++P+ C C F S L H++IH KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 6e-06
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF ++ +L H
Sbjct: 2 SSGSS-GTGEKPYRCAECGKAFTDRSNL-----------------------------FTH 31
Query: 299 YRIHTDEKPFNCS 311
+IHT EKP S
Sbjct: 32 QKIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F + ++ H +I
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI 34
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ + T KPY C CG++F R NL HQ
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFT-----DRSNLFTHQ 32
Score = 34.4 bits (80), Expect = 0.006
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P CA CG F N F H + HTG KP
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.078
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C +C + SN H++I
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI 34
Score = 30.2 bits (69), Expect = 0.24
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C ++ L H+ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 27.5 bits (62), Expect = 2.1
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 20/51 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Y C C K + DR SNL +H +I HTGE+P
Sbjct: 13 YRCAECGKAFTDR-------------------SNLFTHQKI-HTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 51.0 bits (123), Expect = 8e-09
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
KPY C CG AF+ K S H +HT P
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 42.6 bits (101), Expect = 7e-06
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPY 628
G ++P+ C C F+Q +L+ H R+H P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 42.2 bits (100), Expect = 1e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ C C K F QK + H+R+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 30/70 (42%)
Query: 240 HIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHY 299
GE+P++C C AF +K L I H
Sbjct: 2 SSGS-SGGEKPYRCDQCGKAFSQKGSL-----------------------------IVHI 31
Query: 300 RIHTDEKPFN 309
R+HT P +
Sbjct: 32 RVHTGSGPSS 41
Score = 32.5 bits (75), Expect = 0.028
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G KPY+C C +++ L H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.5 bits (75), Expect = 0.030
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
KPY C CG++F ++ +L H
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFS-----QKGSLIVHI 31
Score = 31.8 bits (73), Expect = 0.048
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 383 AHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPY 423
S K P C CG F + VH+R HTG P
Sbjct: 1 GSSGSSGGEK-PYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 31.0 bits (71), Expect = 0.094
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C +C + + + H R+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 26.4 bits (59), Expect = 4.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRHSLKH 826
YRC +C K F Q S I H H
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVH 34
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 8e-09
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C YCG AF + HQ IHT KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F + L+ H+RIH KP +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 2e-06
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+P+ C YC AF L ++H
Sbjct: 2 SSGSS-GSGEKPYVCDYCGKAFGLSAEL-----------------------------VRH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP+ C C K F + H RI
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI 34
Score = 32.9 bits (76), Expect = 0.025
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P +C CG F + H R HTG KP
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.045
Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ + KPY+C CG++F
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFG--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ L H RI HTGE+P
Sbjct: 24 ---------LSAELVRHQRI-HTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.11
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY C C + + + + H+RI
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI 34
Score = 30.2 bits (69), Expect = 0.24
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KPY C C ++ L H+ H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 26.3 bits (59), Expect = 4.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C K F + +RH
Sbjct: 13 YVCDYCGKAFGLSAELVRH 31
Score = 25.6 bits (57), Expect = 8.1
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRC 51
E+ Y C C K F L RH IH +P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 51.0 bits (123), Expect = 9e-09
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KP+ C CG +F+ S HQ IHT KP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C C +F+ S L H+RIH KP +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+PF+C C +F L H
Sbjct: 2 SSGSS-GTGEKPFECAECGKSFSISSQL-----------------------------ATH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 40.9 bits (97), Expect = 3e-05
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKPF C+ C K F + H RI
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI 34
Score = 33.2 bits (77), Expect = 0.015
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
CA CG +F + H R HTG KP +
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.020
Identities = 18/90 (20%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KP+ C CG+SF
Sbjct: 3 SGSSGTGEKPFECAECGKSFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L +H RI HTGE+P
Sbjct: 24 ---------ISSQLATHQRI-HTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.13
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KP++C +C S + S H+RI
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI 34
Score = 30.5 bits (70), Expect = 0.15
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP++C C S++ L H+ H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 25.5 bits (57), Expect = 9.8
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + + C C K+F ++ H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 9e-09
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG +F KS HQ IHT P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.5 bits (106), Expect = 2e-06
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
++P+ C C +F + S L H+RIH P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.1 bits (105), Expect = 3e-06
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C +F +K L H
Sbjct: 2 SSGSS-GTGEKPYECSDCGKSFIKKSQL-----------------------------HVH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT E P S
Sbjct: 32 QRIHTGENPSGPS 44
Score = 43.3 bits (103), Expect = 5e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ CS C K F +K + H RI
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI 34
Score = 34.1 bits (79), Expect = 0.009
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C+ CG +F VH R HTG P
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 32.5 bits (75), Expect = 0.027
Identities = 19/91 (20%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+SF
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFI-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ S L H RI HTGE P
Sbjct: 24 ----------KKSQLHVHQRI-HTGENPSGP 43
Score = 32.1 bits (74), Expect = 0.042
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C S+ L H+ H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C+ C S S H+RI
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI 34
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 9e-09
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ K + C CG AF KS+ HQ IHT KP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
+ F C C F + STL H++IH KP +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 3e-06
Identities = 18/73 (24%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG + F+C C AF K L H
Sbjct: 2 SSGSS-GTGGKHFECTECGKAFTRKSTL-----------------------------SMH 31
Query: 299 YRIHTDEKPFNCS 311
+IHT EKP S
Sbjct: 32 QKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 9e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T K F C+ C K F +K + H +I
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI 34
Score = 32.5 bits (75), Expect = 0.031
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F +H + HTG KP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.074
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ + T K + C CG++F ++ L HQ
Sbjct: 2 SSGSSGTGGKHFECTECGKAFT-----RKSTLSMHQ 32
Score = 30.6 bits (70), Expect = 0.17
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ K ++CT+C + S H++I
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI 34
Score = 30.2 bits (69), Expect = 0.22
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG K ++C C ++ L H+ H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 25.6 bits (57), Expect = 8.8
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 20/51 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ C C K + + S L H +I HTGE+P
Sbjct: 13 FECTECGKA-------------------FTRKSTLSMHQKI-HTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 9e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ +PY C CG AF +S+ HQ IHT KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
+RP+ C +C F S L+ H++IH KP +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 43.2 bits (103), Expect = 5e-06
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGERP+ C C AF ++ +L I+H
Sbjct: 2 SSGSS-GTGERPYICTVCGKAFTDRSNL-----------------------------IKH 31
Query: 299 YRIHTDEKPFNCS 311
+IHT EKP S
Sbjct: 32 QKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 9e-06
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T E+P+ C++C K F + ++ H +I
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34
Score = 35.2 bits (82), Expect = 0.004
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P IC VCG F N H + HTG KP
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.016
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ + T +PY+C CG++F R NL HQ
Sbjct: 2 SSGSSGTGERPYICTVCGKAFT-----DRSNLIKHQ 32
Score = 30.9 bits (71), Expect = 0.11
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+PY CT C + SN + H++I
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34
Score = 29.8 bits (68), Expect = 0.26
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG +PY C C ++ L H+ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 27.5 bits (62), Expect = 1.7
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 20/51 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Y+C C K + DR SNL H +I HTGE+P
Sbjct: 13 YICTVCGKAFTDR-------------------SNLIKHQKI-HTGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y CT C K F ++ I+H
Sbjct: 13 YICTVCGKAFTDRSNLIKH 31
Score = 25.9 bits (58), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 719 CTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCN 750
CT C FT SNLI+H++I H G+ +
Sbjct: 15 CTVCGKAFTDRSNLIKHQKI----HTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 8.2
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 734 RHRRIKHSQHEGK--YVCNYCGKSYIDKRDYTNHVSVH 769
G+ Y+C CGK++ D+ + H +H
Sbjct: 2 SSGSS----GTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 9e-09
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ +KPY C CG AF+ SS HQ IHT KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 6e-07
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
+P+ C C F+ S+L H+ IH KP +
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 2e-05
Identities = 17/73 (23%), Positives = 19/73 (26%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG +P+ C C AF L H
Sbjct: 2 SSGSS-GTGVKPYMCNECGKAFSVYSSL-----------------------------TTH 31
Query: 299 YRIHTDEKPFNCS 311
IHT EKP S
Sbjct: 32 QVIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 7e-05
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T KP+ C+ C K F + H I
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI 34
Score = 32.5 bits (75), Expect = 0.029
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P +C CG F + H HTG KP
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.045
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T +KPY+C CG++F
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S+L +H I HTGE+P
Sbjct: 24 ----------VYSSLTTHQVI-HTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.060
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY C +C + V S+ H+ I
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI 34
Score = 31.3 bits (72), Expect = 0.070
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY C C +++ L H++ H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.9 bits (123), Expect = 1e-08
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C C AF KS+ HQ HT
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 45.2 bits (108), Expect = 9e-07
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
++P+ C C F S L+ H+R H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 41.7 bits (99), Expect = 2e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C+K F K ++ H R
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT 34
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 30/72 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF K +L + H
Sbjct: 2 SSGSS-GTGEKPYECNECQKAFNTKSNL-----------------------------MVH 31
Query: 299 YRIHTDEKPFNC 310
R HT E +
Sbjct: 32 QRTHTGESGPSS 43
Score = 34.4 bits (80), Expect = 0.007
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C C F T N VH R HTG
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C ++ + L H+ TH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 33.2 bits (77), Expect = 0.016
Identities = 16/91 (17%), Positives = 20/91 (21%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C C ++F
Sbjct: 2 SSGSSGTGEKPYECNECQKAFN-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
SNL H R HTGE
Sbjct: 24 ----------TKSNLMVHQRT-HTGESGPSS 43
Score = 30.1 bits (69), Expect = 0.19
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C +C + SN + H+R
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT 34
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG AF+ KS H H+ KP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F+ S L+ H R H KP +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 42.9 bits (102), Expect = 5e-06
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S GE+P+ C C AF K +L I H
Sbjct: 2 SSGSS-GAGEKPYGCSECGKAFSSKSYL-----------------------------IIH 31
Query: 299 YRIHTDEKPFNCS 311
R H+ EKP S
Sbjct: 32 MRTHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ CS C K F K ++ H+R
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT 34
Score = 34.1 bits (79), Expect = 0.008
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C+ CG F + +HMR H+G KP
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.024
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
G KPY C C +++S L H THS
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 31.0 bits (71), Expect = 0.10
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + KPY C CG++F
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L H+R H+GE+P
Sbjct: 24 ----------SKSYLIIHMRT-HSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.37
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY C++C + S + H R
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT 34
Score = 26.0 bits (58), Expect = 5.7
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
+ + Y C+ C K F + I H H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ K + C C F SS HQ IHT KP
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 9e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+ F C C TF Q S+L H+RIH KP +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 7e-06
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+K F C+ C+K F Q + H RI
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI 34
Score = 41.7 bits (99), Expect = 2e-05
Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S G++ F+C C F + L H
Sbjct: 2 SSGSS-GAGKKLFKCNECKKTFTQSSSL-----------------------------TVH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C C TF + + VH R HTG KP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.033
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + K + C C ++F
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L H RI HTGE+P
Sbjct: 24 ----------QSSSLTVHQRI-HTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.24
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
K +KC +C + S+ H+RI
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI 34
Score = 29.0 bits (66), Expect = 0.56
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G K ++C C ++ L H+ H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 25.9 bits (58), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
++C C KTF Q++S H
Sbjct: 13 FKCNECKKTFTQSSSLTVH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG AFA K++ HQ IHT KP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C FAQ + L H+RIH KP +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 3e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C C K F QK ++ H RI
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI 34
Score = 42.9 bits (102), Expect = 6e-06
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF +K +L QH
Sbjct: 2 SSGSS-GTGEKPYRCGECGKAFAQKANL-----------------------------TQH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.020
Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG++F
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFA-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q +NL H RI HTGE+P
Sbjct: 24 ----------QKANLTQHQRI-HTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.021
Identities = 13/32 (40%), Positives = 13/32 (40%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG F N H R HTG KP
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.057
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY+C +C + +N H+RI
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI 34
Score = 29.0 bits (66), Expect = 0.47
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C ++A L H+ H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ Y C CG AF KS+ HQ IH KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
+R + C C F Q STL H+RIH KP +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 4e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T E+ + CS C K F QK + H RI
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI 34
Score = 42.9 bits (102), Expect = 7e-06
Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGER ++C C AF +K L H
Sbjct: 2 SSGSS-GTGERHYECSECGKAFIQKSTL-----------------------------SMH 31
Query: 299 YRIHTDEKPFNCS 311
RIH EKP S
Sbjct: 32 QRIHRGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.032
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C+ CG F +H R H G KP
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.096
Identities = 16/90 (17%), Positives = 21/90 (23%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T + Y C CG++F
Sbjct: 3 SGSSGTGERHYECSECGKAFI--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S L H RI H GE+P
Sbjct: 24 ---------QKSTLSMHQRI-HRGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG + Y+C C ++ L H+ H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 29.4 bits (67), Expect = 0.43
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ Y+C++C + S H+RI
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI 34
Score = 25.6 bits (57), Expect = 9.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C+ C K F Q ++ H
Sbjct: 13 YECSECGKAFIQKSTLSMH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG F+ KS AHQ HT KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 6e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C TF+Q S L H+R H KP +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP+ C+ C K F QK + H R
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT 34
Score = 41.7 bits (99), Expect = 2e-05
Identities = 17/73 (23%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+P+ C C F +K L H
Sbjct: 2 SSGSS-GSGEKPYGCNECGKTFSQKSIL-----------------------------SAH 31
Query: 299 YRIHTDEKPFNCS 311
R HT EKP S
Sbjct: 32 QRTHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.011
Identities = 13/32 (40%), Positives = 13/32 (40%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG TF H R HTG KP
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.035
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KPY C C +++ +L H+ TH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 31.7 bits (73), Expect = 0.061
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + + KPY C CG++F
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S L +H R HTGE+P
Sbjct: 24 ----------QKSILSAHQRT-HTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.55
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY C +C + S AH+R
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT 34
Score = 25.6 bits (57), Expect = 9.7
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C KTF Q + H
Sbjct: 13 YGCNECGKTFSQKSILSAH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C CG AF+ S HQ IHT KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F+Q S L H+RIH KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF + L +H
Sbjct: 2 SSGSS-GTGEKPYKCNECGKAFSQTSKL-----------------------------ARH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F Q + H RI
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRI 34
Score = 31.7 bits (73), Expect = 0.057
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F H R HTG KP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.060
Identities = 19/90 (21%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG++F
Sbjct: 3 SGSSGTGEKPYKCNECGKAFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S L H RI HTGE+P
Sbjct: 24 ---------QTSKLARHQRI-HTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.12
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC +C + S H+RI
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI 34
Score = 30.2 bits (69), Expect = 0.24
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C +++ L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 26.3 bits (59), Expect = 4.6
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y+C C K F Q + RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 1e-08
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ Y C CG AFA KS+ HQ IHT KP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+R + C C FA+ STL+ H+RIH KP +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGER ++C C AF K L I H
Sbjct: 2 SSGSS-GTGERHYECSECGKAFARKSTL-----------------------------IMH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 7e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T E+ + CS C K F +K + H RI
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI 34
Score = 33.2 bits (77), Expect = 0.019
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C+ CG F +H R HTG KP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.075
Identities = 16/90 (17%), Positives = 22/90 (24%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T + Y C CG++F
Sbjct: 3 SGSSGTGERHYECSECGKAFA--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ S L H RI HTGE+P
Sbjct: 24 ---------RKSTLIMHQRI-HTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.23
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG + Y+C C ++A L H+ H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 29.0 bits (66), Expect = 0.63
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ Y+C++C + S + H+RI
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRI 34
Score = 25.9 bits (58), Expect = 6.8
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y C+ C K F + ++ I H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY CK CG AF+ + HQ +HT KP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F+Q + L+ H+R+H KP +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 3e-06
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++CK C AF + HL IQH
Sbjct: 2 SSGSS-GTGEKPYECKECGKAFSQTTHL-----------------------------IQH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT EKP S
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 8e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C C K F Q H+ H R+
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV 34
Score = 31.7 bits (73), Expect = 0.052
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F + H R HTG KP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.10
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG++F
Sbjct: 3 SGSSGTGEKPYECKECGKAFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q ++L H R+ HTGE+P
Sbjct: 24 ---------QTTHLIQHQRV-HTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.20
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+CK C +++ L H+ H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 29.4 bits (67), Expect = 0.36
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C +C + ++ + H+R+
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV 34
Score = 26.3 bits (59), Expect = 4.8
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y C C K F Q T I+H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY CK C AF K+ HQ HT KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C +C+ F Q + L H++ H KP +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++CK C+ AF +K HL QH
Sbjct: 2 SSGSS-GTGEKPYECKVCSKAFTQKAHL-----------------------------AQH 31
Query: 299 YRIHTDEKPFNCS 311
+ HT EKP S
Sbjct: 32 QKTHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 5e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C +C K F QK H+ H +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT 34
Score = 33.7 bits (78), Expect = 0.012
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCK 426
C VC F + H + HTG KP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.021
Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 49/92 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C C ++F
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQCK 254
Q ++L H + HTGE+P
Sbjct: 24 ----------QKAHLAQHQKT-HTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.032
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+CK C+ ++ L H+ TH
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 29.8 bits (68), Expect = 0.30
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C C+ + ++ H++
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT 34
Score = 25.6 bits (57), Expect = 10.0
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y C C+K F Q +H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C+ CG + K + D HQ +HT +P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C + L H+++H +P +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 42.5 bits (101), Expect = 7e-06
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C+ C + K +L H
Sbjct: 2 SSGSS-GTGEKPYKCEKCGKGYNSKFNL-----------------------------DMH 31
Query: 299 YRIHTDEKPFNCS 311
++HT E+P S
Sbjct: 32 QKVHTGERPSGPS 44
Score = 41.0 bits (97), Expect = 3e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C C K + K ++ H ++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG + + +N +H + HTG +P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 33.3 bits (77), Expect = 0.019
Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+ +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYN-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
NL H ++ HTGERP
Sbjct: 24 ----------SKFNLDMHQKV-HTGERPSGP 43
Score = 32.1 bits (74), Expect = 0.046
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC KC N H+++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 31.3 bits (72), Expect = 0.077
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C+ C Y S L H+ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ K Y CK CG +F+ H+ +H+ KP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++ ++C C +F++ LL HER+H KP +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+ + CK C +F L ++H
Sbjct: 2 SSGSS-GTGEKLYNCKECGKSFSRAPCL-----------------------------LKH 31
Query: 299 YRIHTDEKPFNCS 311
R+H+ EKP S
Sbjct: 32 ERLHSGEKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EK +NC C K F + + H R+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL 34
Score = 33.3 bits (77), Expect = 0.015
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG +F H R H+G KP +
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.016
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T K Y C CG+SF
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ L H R+ H+GE+P
Sbjct: 24 ----------RAPCLLKHERL-HSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.031
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
TG K Y CK C S++ L HE HS
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
Score = 31.3 bits (72), Expect = 0.071
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ K Y C +C S L HER+
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL 34
Score = 26.0 bits (58), Expect = 7.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRC 51
E+ Y+C C K FS+ L +H +H +P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 25.6 bits (57), Expect = 9.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C K+F + ++H
Sbjct: 13 YNCKECGKSFSRAPCLLKH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCG 180
+ KP+ C+ CG F S +HQ H+ KP + G
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C C F S +H+R H KP +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 2e-05
Identities = 15/73 (20%), Positives = 20/73 (27%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+PF+C+ C F H
Sbjct: 2 SSGSS-GSGEKPFKCEECGKGFYTNSQC-----------------------------YSH 31
Query: 299 YRIHTDEKPFNCS 311
R H+ EKP S
Sbjct: 32 QRSHSGEKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKPF C C K F +H R
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS 34
Score = 33.7 bits (78), Expect = 0.011
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG F TN + H R H+G KP
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.017
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + + KP+ C CG+ F
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFY-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S SH R H+GE+P
Sbjct: 24 ----------TNSQCYSHQRS-HSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.10
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G KP++C+ C + + H+ +HS
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KP+KC +C S +H+R
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS 34
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ +KPY C CG AF KS H HT
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 42.5 bits (101), Expect = 9e-06
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
+P+ C C F S L+ H R H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T KP+ C+ C K FR K ++ H R
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/72 (22%), Positives = 21/72 (29%), Gaps = 30/72 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG +P+ C C AF+ K +L I H
Sbjct: 2 SSGSS-GTGMKPYVCNECGKAFRSKSYL-----------------------------IIH 31
Query: 299 YRIHTDEKPFNC 310
R HT E +
Sbjct: 32 TRTHTGESGPSS 43
Score = 34.0 bits (79), Expect = 0.009
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY C C ++ S L H TH
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 33.6 bits (78), Expect = 0.010
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P +C CG F++ +H R HTG
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.019
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T +KPY+C CG++FR
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFR-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L H R HTGE
Sbjct: 24 ----------SKSYLIIHTRT-HTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.17
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY C +C + R S + H R
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C CG F H S HQ IHT KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 9e-07
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C F S L H+RIH KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 3e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K FR ++ H RI
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI 34
Score = 42.5 bits (101), Expect = 9e-06
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C F+ +L +H
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFRHNSYL-----------------------------SRH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.019
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F+ N H R HTG KP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.034
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC +C R S H+RI
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI 34
Score = 32.1 bits (74), Expect = 0.040
Identities = 19/90 (21%), Positives = 22/90 (24%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG+ FR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFR--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L H RI HTGE+P
Sbjct: 24 ---------HNSYLSRHQRI-HTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C + L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 25.6 bits (57), Expect = 9.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y+C C K F+ N+ RH
Sbjct: 13 YKCNECGKVFRHNSYLSRH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C+ CG + + + D HQ +H K
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 44.8 bits (107), Expect = 2e-06
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C + + L H+R+H K +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 42.5 bits (101), Expect = 8e-06
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S + E+P++C+ C K +N + NL H
Sbjct: 2 SSGSS-GSVEKPYKCEDCG--------------------KGYNRRL---------NLDMH 31
Query: 299 YRIHTDEKPFNCS 311
R+H EK S
Sbjct: 32 QRVHMGEKTSGPS 44
Score = 40.9 bits (97), Expect = 3e-05
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP+ C C K + +++++ H R+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV 34
Score = 35.5 bits (83), Expect = 0.003
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 383 AHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
+ S K P C CG + N +H R H G K
Sbjct: 2 SSGSSGSVEK-PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 33.6 bits (78), Expect = 0.014
Identities = 13/91 (14%), Positives = 21/91 (23%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + + KPY C CG+ +
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYN-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ NL H R+ H GE+
Sbjct: 24 ----------RRLNLDMHQRV-HMGEKTSGP 43
Score = 31.7 bits (73), Expect = 0.052
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC C N H+R+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV 34
Score = 30.5 bits (70), Expect = 0.16
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+ KPY+C+ C Y L H+ H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP+ C CG AF+ + H+ IHT KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C+ C F+ L H RIH KP +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+PF C C AF + L QH
Sbjct: 2 SSGSS-GTGEKPFDCIDCGKAFSDHIGL-----------------------------NQH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 RRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 7e-06
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKPF+C C K F I + H RI
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI 34
Score = 32.5 bits (75), Expect = 0.029
Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KP+ C+ CG++F
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
L H RI HTGE+P
Sbjct: 24 ----------DHIGLNQHRRI-HTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.032
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
P C CG F + H R HTG KP +
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.040
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP+ C C +++ L H H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 30.9 bits (71), Expect = 0.10
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KP+ C C + H RI
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI 34
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG +F KS HQ HT +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C +F S L H++ H + +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ CS C K F K ++ H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C +F K L H
Sbjct: 2 SSGSS-GTGEKPYKCSDCGKSFTWKSRL-----------------------------RIH 31
Query: 299 YRIHTDEKPFNCS 311
+ HT E+ S
Sbjct: 32 QKCHTGERHSGPS 44
Score = 33.3 bits (77), Expect = 0.016
Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+SF
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L+ H + HTGER
Sbjct: 24 ----------WKSRLRIHQKC-HTGERHSGP 43
Score = 32.9 bits (76), Expect = 0.019
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C+ CG +F +H + HTG +
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.1 bits (74), Expect = 0.043
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC+ C S S H++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34
Score = 31.7 bits (73), Expect = 0.066
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C S+ L+ H+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG AF+ S HQ +HT KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+P+ C C F+Q S L H+R+H KP +
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG +P+QC C AF + L +H
Sbjct: 2 SSGSS-GTGGKPYQCNECGKAFSQTSKL-----------------------------ARH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT EKP S
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T KP+ C+ C K F Q + H R+
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV 34
Score = 32.9 bits (76), Expect = 0.025
Identities = 12/32 (37%), Positives = 12/32 (37%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG F H R HTG KP
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.052
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG++F
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S L H R+ HTGE+P
Sbjct: 24 ----------QTSKLARHQRV-HTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.086
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPYQC C +++ L H+ H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 30.2 bits (69), Expect = 0.22
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C +C + S H+R+
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV 34
Score = 26.3 bits (59), Expect = 5.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y+C C K F Q + RH
Sbjct: 13 YQCNECGKAFSQTSKLARH 31
Score = 25.6 bits (57), Expect = 9.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRC 51
+ Y C C K FS+ + L RH +H +P
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C CG AF KS HQ HT +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F + S L H++ H + +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 43.3 bits (103), Expect = 5e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ CS C K F +K + H +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34
Score = 40.6 bits (96), Expect = 4e-05
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF K L H
Sbjct: 2 SSGSS-GTGEKPYKCSDCGKAFTRKSGL-----------------------------HIH 31
Query: 299 YRIHTDEKPFNCS 311
+ HT E+ S
Sbjct: 32 QQSHTGERHSGPS 44
Score = 33.6 bits (78), Expect = 0.013
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C+ CG F +H + HTG +
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 32.9 bits (76), Expect = 0.026
Identities = 16/90 (17%), Positives = 21/90 (23%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG++F
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFT--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ S L H + HTGER
Sbjct: 24 ---------RKSGLHIHQQS-HTGERHSGP 43
Score = 31.7 bits (73), Expect = 0.058
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C ++ L H+ +H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 29.8 bits (68), Expect = 0.29
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC+ C + S H++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C+ CG F + H +HT KP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 2e-06
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F L H +H KP +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 2e-05
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C+ C K F C +L H
Sbjct: 2 SSGSS-GTGEKPYKCEECG--------------------KGFICRR---------DLYTH 31
Query: 299 YRIHTDEKPFNCS 311
+ +HT EKP S
Sbjct: 32 HMVHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 8e-05
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C C K F + + H +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV 34
Score = 33.3 bits (77), Expect = 0.018
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
P C CG F + + H HTG KP +
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.019
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+ F
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFI-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+L +H + HTGE+P
Sbjct: 24 ----------CRRDLYTHHMV-HTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.041
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC +C + H +
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV 34
Score = 32.1 bits (74), Expect = 0.041
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C+ C + R L H + H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG AF S+ HQ IHT KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C F S L H+ IH KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 42.9 bits (102), Expect = 7e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K FR ++ H I
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI 34
Score = 42.9 bits (102), Expect = 7e-06
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C AF+ +L H
Sbjct: 2 SSGSS-GTGEKPYKCNECGKAFRAHSNL-----------------------------TTH 31
Query: 299 YRIHTDEKPFNCS 311
IHT EKP S
Sbjct: 32 QVIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.015
Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG++FR
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFR-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
SNL +H I HTGE+P
Sbjct: 24 ----------AHSNLTTHQVI-HTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.019
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F+ + N H HTG KP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.039
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC +C + R SN H+ I
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI 34
Score = 31.3 bits (72), Expect = 0.070
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C ++ + L H++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCG 180
+ +KPY C C F+ KS HQ HT +KP + G
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP-SSG 46
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+P+ C C TF+ S L+ H+R H KP +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 42.5 bits (101), Expect = 8e-06
Identities = 19/73 (26%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG +P+ C C F SLK LI H
Sbjct: 2 SSGSS-GTGVKPYGCSQCAKTF-----------------------------SLKSQLIVH 31
Query: 299 YRIHTDEKPFNCS 311
R HT KP S
Sbjct: 32 QRSHTGVKPSGPS 44
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T KP+ CS C K F K + H R
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS 34
Score = 35.2 bits (82), Expect = 0.004
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C+ C TF VH R HTG KP
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 32.1 bits (74), Expect = 0.040
Identities = 15/91 (16%), Positives = 21/91 (23%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T +KPY C C ++F
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L H R HTG +P
Sbjct: 24 ----------LKSQLIVHQRS-HTGVKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY C C +++ L H+ +H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 30.2 bits (69), Expect = 0.22
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY C++C + + S + H+R
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS 34
Score = 26.0 bits (58), Expect = 6.0
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ Y C++C KTF + I H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP+ C C AF KS+ HQ HT KP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+PF+C C AF + K NLI H
Sbjct: 2 SSGSS-GTGEKPFECSECQKAF-----------------------------NTKSNLIVH 31
Query: 299 YRIHTDEKPFNCS 311
R HT EKP S
Sbjct: 32 QRTHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C C F S L+ H+R H KP +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKPF CS C+K F K ++ H R
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRT 34
Score = 34.8 bits (81), Expect = 0.006
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C+ C F T N VH R HTG KP
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.012
Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KP+ C C ++F
Sbjct: 2 SSGSSGTGEKPFECSECQKAFN-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
SNL H R HTGE+P
Sbjct: 24 ----------TKSNLIVHQRT-HTGEKPSGP 43
Score = 30.1 bits (69), Expect = 0.19
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP++C C ++ + L H+ TH
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.8 bits (68), Expect = 0.26
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KP++C++C + SN + H+R
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT 34
Score = 25.5 bits (57), Expect = 8.7
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + + C+ C K F ++ I H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ P+ C CG F HK++ HQ IHT +P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 43.6 bits (104), Expect = 3e-06
Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE PF C C F + K NLI H
Sbjct: 2 SSGSS-GTGENPFICSECGKVF-----------------------------THKTNLIIH 31
Query: 299 YRIHTDEKPFNCS 311
+IHT E+P S
Sbjct: 32 QKIHTGERPSGPS 44
Score = 43.6 bits (104), Expect = 3e-06
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+ PF C C F + L+ H++IH +P +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T E PF CS C K F K ++ H +I
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI 34
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P IC+ CG F N +H + HTG +P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 33.6 bits (78), Expect = 0.010
Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T P++C CG+ F
Sbjct: 2 SSGSSGTGENPFICSECGKVFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+NL H +I HTGERP
Sbjct: 24 ----------HKTNLIIHQKI-HTGERPSGP 43
Score = 30.5 bits (70), Expect = 0.14
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ P+ C++C +N + H++I
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI 34
Score = 29.8 bits (68), Expect = 0.29
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG P+ C C + L H+ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 25.5 bits (57), Expect = 8.4
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 706 AHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCN 750
+ + F C+ C FT+ +NLI H++I H G+ +
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI----HTGERPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG AF KS H+ H +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
++P+ C C F S L+ HER H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP+ C+ C K F K + H R
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT 34
Score = 39.1 bits (92), Expect = 2e-04
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 30/72 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+P++C C AF K LI H
Sbjct: 2 SSGSS-GSGEKPYECNECGKAF-----------------------------IWKSLLIVH 31
Query: 299 YRIHTDEKPFNC 310
R H +
Sbjct: 32 ERTHAGVSGPSS 43
Score = 33.3 bits (77), Expect = 0.016
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KPY+C C ++ +L HE TH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 31.3 bits (72), Expect = 0.070
Identities = 9/29 (31%), Positives = 9/29 (31%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F VH R H G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 30.2 bits (69), Expect = 0.17
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY+C +C + S + HER
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT 34
Score = 30.2 bits (69), Expect = 0.18
Identities = 13/91 (14%), Positives = 18/91 (19%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + + KPY C CG++F
Sbjct: 2 SSGSSGSGEKPYECNECGKAFI-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L H R H G
Sbjct: 24 ----------WKSLLIVHERT-HAGVSGPSS 43
Score = 26.3 bits (59), Expect = 5.4
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y C C K F + I H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 3e-08
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG + + D HQ +HT K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C+ C + + L H+R+H K +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+P++C C +K + L H
Sbjct: 2 SSGSS-GSGEKPYKCVECGKGYKRRLDL-----------------------------DFH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT EK S
Sbjct: 32 QRVHTGEKLSGPS 44
Score = 41.7 bits (99), Expect = 1e-05
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP+ C C K +++++ + H R+
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV 34
Score = 33.7 bits (78), Expect = 0.012
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ + + KPY C+ CG+ ++ +R +L HQ
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYK-----RRLDLDFHQ 32
Score = 33.3 bits (77), Expect = 0.015
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG +K + H R HTG K
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 31.3 bits (72), Expect = 0.084
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KPY+C C Y L H+ H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 31.0 bits (71), Expect = 0.097
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC +C + + H+R+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV 34
Score = 26.7 bits (60), Expect = 3.9
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 20/51 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Y C C K YK R +L H R+ HTGE+
Sbjct: 13 YKCVECGKGYKRR-------------------LDLDFHQRV-HTGEKLSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
PY C CG AF+ K +HQ H KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+ P+ C C F++ L++H+R H KP +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE P++C C AF K+ L I H
Sbjct: 2 SSGSS-GTGENPYECHECGKAFSRKYQL-----------------------------ISH 31
Query: 299 YRIHTDEKPFNCS 311
R H EKP S
Sbjct: 32 QRTHAGEKPSGPS 44
Score = 42.9 bits (102), Expect = 7e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T E P+ C C K F +K + +H R
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT 34
Score = 33.6 bits (78), Expect = 0.012
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG F Y H R H G KP +
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.065
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG PY+C C +++ L H+ TH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 31.3 bits (72), Expect = 0.087
Identities = 15/90 (16%), Positives = 20/90 (22%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T PY C CG++F
Sbjct: 3 SGSSGTGENPYECHECGKAFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ L SH R H GE+P
Sbjct: 24 ---------RKYQLISHQRT-HAGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.78
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
PY+C +C + ++H+R
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT 34
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG F S HQ IHT +KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F Q S L NH+RIH KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 42.9 bits (102), Expect = 6e-06
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C F + HL H
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFTQNSHL-----------------------------ANH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT KP S
Sbjct: 32 QRIHTGVKPSGPS 44
Score = 42.5 bits (101), Expect = 8e-06
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F Q H+ NH RI
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI 34
Score = 32.9 bits (76), Expect = 0.025
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F N + H R HTG KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 32.5 bits (75), Expect = 0.031
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+ F
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L +H RI HTG +P
Sbjct: 24 ----------QNSHLANHQRI-HTGVKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC +C S+ H+RI
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI 34
Score = 29.4 bits (67), Expect = 0.35
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C + L +H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 25.9 bits (58), Expect = 7.0
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y+C C K F QN+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP+ C CG F+ +S+ + H +HT KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C+ C F++ S L H ++H KP +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 7e-06
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+PF+C C F + L H
Sbjct: 2 SSGSS-GTGEKPFKCVECGKGFSRRSAL-----------------------------NVH 31
Query: 299 YRIHTDEKPFNCS 311
+++HT EKP S
Sbjct: 32 HKLHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 3e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKPF C C K F ++ + H ++
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34
Score = 32.9 bits (76), Expect = 0.020
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KP+ C+ CG+ F
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ S L H ++ HTGE+P
Sbjct: 24 ----------RRSALNVHHKL-HTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.029
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F VH + HTG KP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.10
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP++C C ++ L H H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 30.2 bits (69), Expect = 0.18
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KP+KC +C S H ++
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 49.1 bits (118), Expect = 4e-08
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
K Y C CG F+ S HQ IHT KP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 8e-07
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++ + C C F++ S L H++IH KP +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 1e-05
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EK + C+ C K F + + H +I
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI 34
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/73 (23%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+ ++C C F L QH
Sbjct: 2 SSGSS-GTGEKRYKCNECGKVFSRNSQL-----------------------------SQH 31
Query: 299 YRIHTDEKPFNCS 311
+IHT EKP S
Sbjct: 32 QKIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.023
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F N H + HTG KP
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.11
Identities = 16/90 (17%), Positives = 21/90 (23%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T K Y C CG+ F
Sbjct: 3 SGSSGTGEKRYKCNECGKVFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ S L H +I HTGE+P
Sbjct: 24 ---------RNSQLSQHQKI-HTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.19
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
K YKC +C S H++I
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI 34
Score = 29.8 bits (68), Expect = 0.32
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG K Y+C C ++ L H+ H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 25.6 bits (57), Expect = 8.3
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y+C C K F +N+ +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 4e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP+ C CG +F +S + H +HT KP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C +C +F S L H +H KP +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKPF C +C K F + + H +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+PF+C C +F + L +H
Sbjct: 2 SSGSS-GTGEKPFKCDICGKSFCGRSRL-----------------------------NRH 31
Query: 299 YRIHTDEKPFNCS 311
+HT EKP S
Sbjct: 32 SMVHTAEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.013
Identities = 15/91 (16%), Positives = 21/91 (23%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KP+ C CG+SF
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFC-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L H + HT E+P
Sbjct: 24 ----------GRSRLNRHSMV-HTAEKPSGP 43
Score = 33.2 bits (77), Expect = 0.016
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C +CG +F H HT KP
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 33.2 bits (77), Expect = 0.017
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP++C C S+ L H + H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 32.8 bits (76), Expect = 0.025
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KP+KC C S S H +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 25.9 bits (58), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 804 YRCTRCNKTFKQNTSFIRHSLKH 826
++C C K+F + RHS+ H
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG F S H IHT KP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F Q S L NH RIH KP +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 5e-06
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+P++C C F + HL H
Sbjct: 2 SSGSS-GSGEKPYKCNECGKVFTQNSHL-----------------------------TNH 31
Query: 299 YRIHTDEKPFNCS 311
+RIHT EKP S
Sbjct: 32 WRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 7e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP+ C+ C K F Q H+ NH RI
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34
Score = 32.1 bits (74), Expect = 0.039
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F N + H R HTG KP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.043
Identities = 18/91 (19%), Positives = 25/91 (27%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + + KPY C CG+ F
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L +H RI HTGE+P
Sbjct: 24 ----------QNSHLTNHWRI-HTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.12
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC +C S+ H RI
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34
Score = 29.8 bits (68), Expect = 0.29
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KPY+C C + L +H H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 25.9 bits (58), Expect = 6.3
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y+C C K F QN+ H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 5e-08
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY+C CG AF + + H +HT
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+SC +C F + L H R+H +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP++C++C K F H+ HLR+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 43.3 bits (103), Expect = 5e-06
Identities = 18/73 (24%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P+ C C AF HL QH
Sbjct: 2 SSGSS-GTGEKPYSCNVCGKAFVLSAHL-----------------------------NQH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT E S
Sbjct: 32 LRVHTQETLSGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C VCG F + + H+R HT +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 32.5 bits (75), Expect = 0.031
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 49/91 (53%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG++F
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFV--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQCK 254
++L H+R+ HT E
Sbjct: 24 ---------LSAHLNQHLRV-HTQETLSGPS 44
Score = 30.9 bits (71), Expect = 0.11
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY C C + + ++ H R+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 30.9 bits (71), Expect = 0.12
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY C C ++ L H H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 5e-08
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG F S HQ IHT KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.5 bits (109), Expect = 8e-07
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C F + S L H+ IH KP +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 43.2 bits (103), Expect = 5e-06
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C F+ HL +H
Sbjct: 2 SSGSS-GTGEKPYKCHECGKVFRRNSHL-----------------------------ARH 31
Query: 299 YRIHTDEKPFNCS 311
IHT EKP S
Sbjct: 32 QLIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 8e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C C K FR+ H+ H I
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI 34
Score = 32.4 bits (75), Expect = 0.031
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F+ N + H HTG KP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.089
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+ FR
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFR-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ S+L H I HTGE+P
Sbjct: 24 ----------RNSHLARHQLI-HTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.16
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC +C R S+ H+ I
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI 34
Score = 30.1 bits (69), Expect = 0.23
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C + L H++ H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 26.3 bits (59), Expect = 5.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y+C C K F++N+ RH
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 5e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C+ CG AF S H ++H+ +P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C +C F S L+ H +H +P +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 44.0 bits (105), Expect = 2e-06
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C+ C AF+ HL +QH
Sbjct: 2 SSGSS-GTGEKPYKCQVCGKAFRVSSHL-----------------------------VQH 31
Query: 299 YRIHTDEKPFNCS 311
+ +H+ E+P S
Sbjct: 32 HSVHSGERPSGPS 44
Score = 43.3 bits (103), Expect = 5e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C +C K FR H+ H +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV 34
Score = 32.5 bits (75), Expect = 0.029
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C VCG F+ + + H H+G +P +
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 32.1 bits (74), Expect = 0.039
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KPY C CG++FR
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFR--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S+L H + H+GERP
Sbjct: 24 ---------VSSHLVQHHSV-HSGERPSGP 43
Score = 32.1 bits (74), Expect = 0.039
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC C + RV S+ + H +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV 34
Score = 29.8 bits (68), Expect = 0.32
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
TG KPY+C+ C ++ L H HS
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 25.9 bits (58), Expect = 6.9
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y+C C K F+ ++ ++H
Sbjct: 13 YKCQVCGKAFRVSSHLVQH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KP+ C+ CG F S +HQ +HT KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++PF C C F Q S L +H+R+H KP +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 1e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKPF C C K+F Q + +H R+
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+PF+C+ C F + L H
Sbjct: 2 SSGSS-GSGEKPFKCEECGKRFTQNSQL-----------------------------HSH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT EKP S
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.024
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ + KP+ C CG+ F
Sbjct: 3 SGSSGSGEKPFKCEECGKRFT--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S L SH R+ HTGE+P
Sbjct: 24 ---------QNSQLHSHQRV-HTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.027
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F N H R HTG KP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.14
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KP++C+ C + L H+ H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KP+KC +C S +H+R+
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 26.3 bits (59), Expect = 4.7
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + ++C C K F QN+ H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-08
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG +F KS + H+ IHT KP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C +F Q S L H RIH KP +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 6e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F QK H+ H RI
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI 34
Score = 42.9 bits (102), Expect = 6e-06
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P+ C C +F +K HL +H
Sbjct: 2 SSGSS-GTGEKPYICNECGKSFIQKSHL-----------------------------NRH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 RRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.024
Identities = 20/91 (21%), Positives = 26/91 (28%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY+C CG+SF
Sbjct: 2 SSGSSGTGEKPYICNECGKSFI-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L H RI HTGE+P
Sbjct: 24 ----------QKSHLNRHRRI-HTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.043
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P IC CG +F + H R HTG KP
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.074
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY C C S+ L H H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 30.6 bits (70), Expect = 0.17
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY C +C S S+ H RI
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI 34
Score = 25.6 bits (57), Expect = 9.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C K+F Q + RH
Sbjct: 13 YICNECGKSFIQKSHLNRH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 5e-08
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG F S H+ IHT KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F Q S L+ H IH KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 7e-06
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C F + HL ++H
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFTQNSHL-----------------------------VRH 31
Query: 299 YRIHTDEKPFNCS 311
IHT EKP S
Sbjct: 32 RGIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F Q H+ H I
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI 34
Score = 32.5 bits (75), Expect = 0.036
Identities = 18/91 (19%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+ F
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L H I HTGE+P
Sbjct: 24 ----------QNSHLVRHRGI-HTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.069
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG F N + H HTG KP +
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 30.5 bits (70), Expect = 0.17
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPYKC +C S+ + H I
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI 34
Score = 30.1 bits (69), Expect = 0.18
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 26.3 bits (59), Expect = 4.7
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y+C C K F QN+ +RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 5e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP+ CK CG AF +H IHT KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C C F Q L +H RIH KP +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+PF+CK C AF++ HL H
Sbjct: 2 SSGSS-GSGEKPFKCKECGKAFRQNIHL-----------------------------ASH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 LRIHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 3e-06
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKPF C C K FRQ IH+ +HLRI
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34
Score = 33.2 bits (77), Expect = 0.019
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + + KP+ C CG++FR
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFR-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q +L SH+RI HTGE+P
Sbjct: 24 ----------QNIHLASHLRI-HTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.022
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG F+ N + H+R HTG KP +
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 30.5 bits (70), Expect = 0.16
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KP+KC +C + R + +H RI
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34
Score = 30.2 bits (69), Expect = 0.24
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KP++CK C ++ L H H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-08
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG F S H+ IHT KP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+P+ C C F Q S L H IH KP +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 8e-06
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG++P++C C F + HL +H
Sbjct: 2 SSGSS-GTGKKPYKCNECGKVFTQNSHL-----------------------------ARH 31
Query: 299 YRIHTDEKPFNCS 311
IHT EKP S
Sbjct: 32 RGIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T +KP+ C+ C K F Q H+ H I
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI 34
Score = 31.3 bits (72), Expect = 0.069
Identities = 18/91 (19%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+ F
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L H I HTGE+P
Sbjct: 24 ----------QNSHLARHRGI-HTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.077
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C + L H H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.9 bits (71), Expect = 0.097
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F N + H HTG KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.40
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC +C S+ H I
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI 34
Score = 25.9 bits (58), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y+C C K F QN+ RH
Sbjct: 13 YKCNECGKVFTQNSHLARH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 6e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY C CG AF + + H+ IHT +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++P+ C C F + + L H RIH ++P +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 42.5 bits (101), Expect = 8e-06
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+P++C C AF HL +H
Sbjct: 2 SSGSS-GSGEKPYKCSECGKAFHRHTHL-----------------------------NEH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT +P S
Sbjct: 32 RRIHTGYRPSGPS 44
Score = 42.5 bits (101), Expect = 8e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP+ CS C K F + H+ H RI
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI 34
Score = 31.7 bits (73), Expect = 0.067
Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ + KPY C CG++F
Sbjct: 3 SGSSGSGEKPYKCSECGKAFH--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ ++L H RI HTG RP
Sbjct: 24 ---------RHTHLNEHRRI-HTGYRPSGP 43
Score = 30.5 bits (70), Expect = 0.13
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C+ CG F + + H R HTG++P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 30.5 bits (70), Expect = 0.16
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KPY+C C ++ L H H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 30.2 bits (69), Expect = 0.24
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC++C + ++ H RI
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI 34
Score = 25.5 bits (57), Expect = 9.4
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + Y+C+ C K F ++T H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG F S H+ IHT KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F Q S L H IH KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 7e-06
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C F + HL +H
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFTQNSHL-----------------------------ARH 31
Query: 299 YRIHTDEKPFNCS 311
IHT EKP S
Sbjct: 32 RGIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F Q H+ H I
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI 34
Score = 31.7 bits (73), Expect = 0.056
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG F N + H HTG KP +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.069
Identities = 18/91 (19%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+ F
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L H I HTGE+P
Sbjct: 24 ----------QNSHLARHRGI-HTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.21
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 29.4 bits (67), Expect = 0.46
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC +C S+ H I
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI 34
Score = 25.5 bits (57), Expect = 8.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y+C C K F QN+ RH
Sbjct: 13 YKCNECGKVFTQNSHLARH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ K Y C CG F+ S HQ +HT KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 589 IHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++ + C +C F+Q S L H+R+H KP +
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S GE+ ++C C F + HL H
Sbjct: 2 SSGSS-GMGEKCYKCDVCGKEFSQSSHL-----------------------------QTH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT EKP S
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
EK + C +C K+F Q H++ H R+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV 34
Score = 33.7 bits (78), Expect = 0.010
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C VCG F + + H R HTG KP +
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.018
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ K Y C CG+ F
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFS--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+LQ+H R+ HTGE+P
Sbjct: 24 ---------QSSHLQTHQRV-HTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.029
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 412 VHMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G K Y+C C ++ LQ H+ H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 29.8 bits (68), Expect = 0.29
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
K YKC C S+ H+R+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 8e-08
Identities = 83/609 (13%), Positives = 162/609 (26%), Gaps = 190/609 (31%)
Query: 264 HHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHV 323
HH H++ G+ + + +++ + E F F K V
Sbjct: 1 HHHHHHMDFETGEHQ-YQYK----------DILSVF-----EDAF-----VDNFDCK-DV 38
Query: 324 KNHLRIIHNMNFCDHCFKFVGPEQELNIFRHCEVCDKSNNSYLLCWKCGFKTSVLNELKA 383
++ + I + DH D + + L W L
Sbjct: 39 QDMPKSILSKEEIDHIIM---------------SKDAVSGTLRLFW-------TLLS--- 73
Query: 384 HIKSHHFPKQPSICAV-CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHE 442
KQ + + + NY + + P + + S + ++ +
Sbjct: 74 --------KQEEMVQKFVEEVLRINYKFLM--------SPIKTEQRQPSMMTRMYIEQRD 117
Query: 443 ITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMA-------HNQVLQ 495
++ F KY +++ +P + + V
Sbjct: 118 RLYNDNQVFA-----KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 496 RHMTLHFTQNKHPCN-------RCNASFSSMVQLS--CHQIRAHGKQKQRFMCHRCGIIN 546
+ Q K CN+ + + L +QI + + N
Sbjct: 173 SYKV----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS------N 222
Query: 547 LKRKYHVYHLKYECGYTRTLPPELRRQFKH----------DIVYMDSKT--NFNIHMRIH 594
+K + H ++ ELRR K V ++K FN+ +I
Sbjct: 223 IKLRIH------------SIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKI- 268
Query: 595 GKDRPFSCLL----CNNTFAQLSTLLNHERIHDNHKPY----------KCTKCNYS---A 637
LL T + H + + K C
Sbjct: 269 --------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 638 RVLS-NKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQ 696
VL+ N I +N K +C + I S PA+ +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 697 SFALFSN------------------------LNAHYNKHLKVRRFSCTNCSLNFTYLSNL 732
++F +N + L ++ + S+ YL
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 733 IR-------HRR-IKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCN 784
++ HR + H + + Y+D+ Y +H+ H+ + + +R
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-SHIGHHL-KNIEHPER----M 490
Query: 785 ATFRIKKFL 793
FR FL
Sbjct: 491 TLFR-MVFL 498
Score = 52.9 bits (126), Expect = 4e-07
Identities = 39/257 (15%), Positives = 74/257 (28%), Gaps = 73/257 (28%)
Query: 567 PPELRRQFKHDIVYMDSKTNFNIHM----RIHGKDRPFSCLLCNNTFAQLSTLLNHE--- 619
P E R+ F V+ + +I I ++ N + S +
Sbjct: 368 PAEYRKMFDRLSVFPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 620 --RIHDNHKPYKCTKCNYSA--RVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRR 675
I + K N A R + + + + D + +++ FYS +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHIGH 479
Query: 676 H-RKIFHSNESYAPAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIR 734
H + I H + LF + + L+F +L IR
Sbjct: 480 HLKNIEHP-------------ERMTLFRMV---F---------------LDFRFLEQKIR 508
Query: 735 HRRIKHSQHEGKYVCNYCGKSY---IDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKK 791
H N G + Y ++ + + Y + + I
Sbjct: 509 H---------DSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLVNA------ILD 550
Query: 792 FLTRHMKTHLIQYRCTR 808
FL + + +LI + T
Sbjct: 551 FLPKI-EENLICSKYTD 566
Score = 44.1 bits (103), Expect = 2e-04
Identities = 68/468 (14%), Positives = 133/468 (28%), Gaps = 124/468 (26%)
Query: 31 SKLTTLKRH--VGIH-MKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYY----KCD 83
L L+ V I + G G+ ++ L ++ Q K I++ C+
Sbjct: 142 QALLELRPAKNVLIDGVL------G-SGKTWVALDVCLSYKVQCKMDFK-IFWLNLKNCN 193
Query: 84 KCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYH-FKAHLRIHLN 142
+ K + + T S++ + R H +A LR L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSS--------------NIKLRIHSIQAELRRLLK 239
Query: 143 IKPYA-C---------KYCGNAFAHKS-----SRDAHQNIHTDLKPYLCLTCGQSFRTFN 187
KPY C NAF +R + L + +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLS-------AATTTHIS 290
Query: 188 LMKRHNLCDHQDVRNYLCNFCNKTYKD--RKTLDNH-----ILG-----HVD-IKPYKQL 234
L +V++ L + + +D R+ L + I+ + +K +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 235 SN--LQSHIRISHTGERP--FQCKYCNYA-FKEKHHLETHV------NLHLGKTKSFNCN 283
+ L + I S P ++ + + F H+ T + ++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 284 VCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKN----HLRIIHNMNF---- 335
+ YS K I S+ K+ ++N H I+ + N
Sbjct: 411 LHKYSLVEKQPKESTISIP--------SI---YLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 336 -CDHC---------FKFVG-------PEQELNIFRHCEVCD------KSNNSYLLCWKCG 372
D + +G + + +FR + D K + G
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASG 518
Query: 373 FKTSVLNELKAHIKSHHFPKQPSICAVCGD--TFKTNYNYFVHMRRHT 418
+ L +LK + K + P + F + ++T
Sbjct: 519 SILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 8e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KP+ C+ CG F S +HQ +HT KP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 8e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C C F Q S L +H+R+H KP +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 3e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKPF C C K+F Q H+ +H R+
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV 34
Score = 42.9 bits (102), Expect = 5e-06
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+PFQC+ C F + HL H
Sbjct: 2 SSGSS-GSGEKPFQCEECGKRFTQNSHL-----------------------------HSH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT EKP S
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.021
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ + KP+ C CG+ F
Sbjct: 3 SGSSGSGEKPFQCEECGKRFT--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L SH R+ HTGE+P
Sbjct: 24 ---------QNSHLHSHQRV-HTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.034
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG F N + H R HTG KP +
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.14
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G KP+QC+ C + L H+ H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 29.4 bits (67), Expect = 0.39
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KP++C +C S+ +H+R+
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV 34
Score = 25.6 bits (57), Expect = 9.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
++C C K F QN+ H
Sbjct: 13 FQCEECGKRFTQNSHLHSH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+P+ C CG +F + HQ IHT KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
+RP C C +F Q + L+ H+RIH KP +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 2e-06
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGERP +C C +F + HL IQH
Sbjct: 2 SSGSS-GTGERPHKCNECGKSFIQSAHL-----------------------------IQH 31
Query: 299 YRIHTDEKPFNCS 311
RIHT EKP S
Sbjct: 32 QRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T E+P C+ C K F Q H+ H RI
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI 34
Score = 32.1 bits (74), Expect = 0.047
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T +P+ C CG+SF
Sbjct: 3 SGSSGTGERPHKCNECGKSFI--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q ++L H RI HTGE+P
Sbjct: 24 ---------QSAHLIQHQRI-HTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.081
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG +F + + H R HTG KP
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.17
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG +P++C C S+ L H+ H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 30.2 bits (69), Expect = 0.19
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ +P+KC +C S ++ + H+RI
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI 34
Score = 27.5 bits (62), Expect = 2.2
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + ++C C K+F Q+ I+H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG F S H+ +HT KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C F Q S L H R+H KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP+ C+ C K F Q H+ H R+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV 34
Score = 41.7 bits (99), Expect = 2e-05
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+P++C C F + HL +H
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFTQNSHL-----------------------------ARH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT KP S
Sbjct: 32 RRVHTGGKPSGPS 44
Score = 31.7 bits (73), Expect = 0.060
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG F N + H R HTG KP +
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.093
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C CG+ F
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFT-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q S+L H R+ HTG +P
Sbjct: 24 ----------QNSHLARHRRV-HTGGKPSGP 43
Score = 30.2 bits (69), Expect = 0.22
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KPY+C C + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 28.6 bits (65), Expect = 0.64
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC +C S+ H R+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV 34
Score = 25.6 bits (57), Expect = 8.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y+C C K F QN+ RH
Sbjct: 13 YKCNECGKVFTQNSHLARH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ + K + C+ C F+ SS HQN+H KP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 42.5 bits (101), Expect = 8e-06
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++ + C C+ F+Q S+L H+ +H KP +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 38.7 bits (91), Expect = 2e-04
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
EK + C C+ F Q ++ H +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S S GE+ ++C+ C+ F + L H
Sbjct: 2 SSGS-SGMGEKTWKCRECDMCFSQASSL-----------------------------RLH 31
Query: 299 YRIHTDEKPFNCS 311
+H EKP S
Sbjct: 32 QNVHVGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.024
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 386 KSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
S ++ C C F + +H H G KP
Sbjct: 4 GSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.062
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 10/34 (29%)
Query: 229 KPYK---------QLSNLQSHIRISHTGERPFQC 253
K +K Q S+L+ H + H GE+P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNV-HVGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.29
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G K ++C+ C+ ++ L+ H+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 28.3 bits (64), Expect = 0.91
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
K +KC +C+ S+ H+ +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 47.6 bits (114), Expect = 2e-07
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQ-NIHTDLKPYLC 176
+ KPY C CG AF +S H HT KP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 45.3 bits (108), Expect = 1e-06
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIH 331
T +KP+ C C K F Q + H R H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHER-IHDNHKPYKCT 631
+P+ C+ C F Q ++L+ H R H KP +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 39.9 bits (94), Expect = 7e-05
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 31/74 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TG++P++C C AF + L I+H
Sbjct: 2 SSGSS-GTGKKPYECIECGKAFIQNTSL-----------------------------IRH 31
Query: 299 YR-IHTDEKPFNCS 311
+R HT EKP S
Sbjct: 32 WRYYHTGEKPSGPS 45
Score = 34.8 bits (81), Expect = 0.004
Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 48/91 (52%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KPY C+ CG++F
Sbjct: 2 SSGSSGTGKKPYECIECGKAFI-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q ++L H R HTGE+P
Sbjct: 24 ----------QNTSLIRHWRYYHTGEKPSGP 44
Score = 31.4 bits (72), Expect = 0.083
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYH 651
+ KPY+C +C + ++ + H R YH
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 30.2 bits (69), Expect = 0.21
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 413 HMRRHTGFKPYQCKTCNASYA-SMRVLQHHEITH 445
TG KPY+C C ++ + +++H H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 30.2 bits (69), Expect = 0.23
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 397 CAVCGDTFKTNYNYFVHMRR-HTGFKPYQC 425
C CG F N + H R HTG KP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 28.3 bits (64), Expect = 1.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C K F QNTS IRH
Sbjct: 13 YECIECGKAFIQNTSLIRH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KP+ C CG ++ + HQ +HT KP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 7e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
++PF C C ++ Q L H+R+H KP +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 4e-06
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+PF+C C ++ ++ HL QH
Sbjct: 2 SSGSS-GTGEKPFKCGECGKSYNQRVHL-----------------------------TQH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT EKP S
Sbjct: 32 QRVHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 5e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKPF C C K + Q++H+ H R+
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV 34
Score = 32.5 bits (75), Expect = 0.029
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C CG ++ + H R HTG KP +
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.047
Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ T KP+ C CG+S+
Sbjct: 3 SGSSGTGEKPFKCGECGKSYN--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q +L H R+ HTGE+P
Sbjct: 24 ---------QRVHLTQHQRV-HTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.17
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KP+KC +C S + H+R+
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV 34
Score = 30.2 bits (69), Expect = 0.24
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP++C C SY L H+ H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 25.6 bits (57), Expect = 8.8
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 795 RHMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ + ++C C K++ Q +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 48.1 bits (115), Expect = 2e-07
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 34/98 (34%)
Query: 234 LSNLQSHIRISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSL 291
++NL +++ RP+ C C+ F L H
Sbjct: 6 MNNLLNYVV---PKMRPYACPVESCDRRFSRSDELTRH---------------------- 40
Query: 292 KWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
RIHT +KPF C +C + F + H+ H+R
Sbjct: 41 -------IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 42.3 bits (100), Expect = 2e-05
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 233 QLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
+ L HIRI HTG++PFQC+ C F HL TH+ H
Sbjct: 33 RSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.5 bits (98), Expect = 3e-05
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 13 HESQDERTYHCPL--CSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQ 70
+ R Y CP+ C ++FS+ L RH+ IH +P +C C + F L HIR
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR- 70
Query: 71 RHT 73
HT
Sbjct: 71 THT 73
Score = 41.1 bits (97), Expect = 5e-05
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 413 HMRRHTGFKPYQC--KTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHM 470
+PY C ++C+ ++ L H H+ F C C + F++ +++ H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 471 KRH 473
+ H
Sbjct: 70 RTH 72
Score = 38.4 bits (90), Expect = 5e-04
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 588 NIHMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
N+ + K RP++C C+ F++ L H RIH KP++C C
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICM 56
Score = 37.3 bits (87), Expect = 0.001
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 374 KTSVLNELKAHIKSHHFPKQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKTCNAS 431
+ +N L ++ +P C V C F + H+R HTG KP+QC+ C +
Sbjct: 2 EPHPMNNLLNYVVPK---MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Query: 432 YASMRVLQHHEITHS 446
++ L H TH+
Sbjct: 59 FSRSDHLTTHIRTHT 73
Score = 37.3 bits (87), Expect = 0.001
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 132 HFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSF-RTFNL 188
+ ++ ++PYAC C F+ H IHT KP+ C C ++F R+ +L
Sbjct: 8 NLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 189 ---MKRH 192
++ H
Sbjct: 66 TTHIRTH 72
Score = 35.4 bits (82), Expect = 0.006
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
H+RIH +PF C +C F++ L H R H
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 33.8 bits (78), Expect = 0.021
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 694 CNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
C++ F+ L H H + F C C NF+ +L H R
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 33.4 bits (77), Expect = 0.028
Identities = 12/64 (18%), Positives = 29/64 (45%)
Query: 438 LQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRH 497
L ++ + + P +C + F++ + + +H++ H C IC + + + L H
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 498 MTLH 501
+ H
Sbjct: 69 IRTH 72
Score = 33.0 bits (76), Expect = 0.038
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHT 169
H+RIH KP+ C+ C F+ H HT
Sbjct: 36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.7 bits (70), Expect = 0.25
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 29 QFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCN 86
+ + L +V M+ P C C + F L HIR HT K ++C C
Sbjct: 2 EPHPMNNLLNYVVPKMR--PYACPVESCDRRFSRSDELTRHIR-IHTGQKP--FQCRICM 56
Query: 87 KTYKSKYKFERHKNTH 102
+ + H TH
Sbjct: 57 RNFSRSDHLTTHIRTH 72
Score = 27.3 bits (61), Expect = 5.0
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 781 HKCNATFRIKKF-----LTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
+ C ++F LTRH++ H Q ++C C + F ++ H H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 26.9 bits (60), Expect = 5.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 371 CGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHT 418
C + S +EL HI+ H K P C +C F + + H+R HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 26.5 bits (59), Expect = 7.2
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 469 HMKRHFNTN-KP-VC--EICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSC 524
++ + +P C E C + + + L RH+ +H Q C C +FS L+
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 525 HQ 526
H
Sbjct: 68 HI 69
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 47.6 bits (114), Expect = 2e-07
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 28/76 (36%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S + +P+ C+ C F HL H+ ++HT
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIK----------------------------QVHT 37
Query: 304 DEKPFNCSLCEKQFRQ 319
E+P C +
Sbjct: 38 SERPHKCQVWVSGPSS 53
Score = 47.2 bits (113), Expect = 2e-07
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAH-QNIHTDLKPYLCLTCGQSFRT 185
+ KPY C+ CG F+ + H + +HT +P+ C +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 43.3 bits (103), Expect = 6e-06
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIH 331
+ KP+ C C K F + H+ H++ +H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 41.8 bits (99), Expect = 2e-05
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAF 260
K + + +L HI+ HT ERP +C+
Sbjct: 20 KGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 41.4 bits (98), Expect = 3e-05
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHE-RIHDNHKPYKCTKC 633
+P+ C C F++ L H ++H + +P+KC
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 38.3 bits (90), Expect = 3e-04
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRR-HTGFKPYQCKTCNASYAS 434
P IC CG F + H+++ HT +P++C+ + +S
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 34.5 bits (80), Expect = 0.007
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 39 HVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKS 91
+P C CG+ F LN HI+Q HTS + +KC S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP--HKCQVWVSGPSS 53
Score = 31.4 bits (72), Expect = 0.081
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVL-QHHEITHSKTLKFPCINCGKYFT 461
+ KPY C++C ++ L H + H+ C +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 31.0 bits (71), Expect = 0.13
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHV-GIHMKTQPVRCGYCGQFF 58
+ Y C C K FS+ L H+ +H +P +C
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 29.5 bits (67), Expect = 0.44
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSY 756
+ C +C F+ +L H + H+ E + C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSGP 51
Score = 27.2 bits (61), Expect = 2.9
Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 32/83 (38%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRH 676
+ KPY C C FS L H
Sbjct: 2 SSGSSGSVGKPYICQSCGKG----------------------------FSRP--DHLNGH 31
Query: 677 RKIFHSNESYAPAKCKICNQSFA 699
K H++E P KC++ +
Sbjct: 32 IKQVHTSER--PHKCQVWVSGPS 52
Score = 26.4 bits (59), Expect = 6.3
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 441 HEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKP-VCEIC 484
+ S + C +CGK F++ +++ H+K+ + +P C++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ PY C CG F+ K +HQ H+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.5 bits (101), Expect = 8e-06
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 29/67 (43%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S TGE P++C C F K L + H + H+
Sbjct: 6 SGTGENPYECCECGKVFSRKDQL-----------------------------VSHQKTHS 36
Query: 304 DEKPFNC 310
+ +
Sbjct: 37 GQSGPSS 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
+ P+ C C F++ L++H++ H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 37.5 bits (88), Expect = 5e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T E P+ C C K F +K + +H +
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKT 34
Score = 31.7 bits (73), Expect = 0.057
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F H + H+G
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.2 bits (69), Expect = 0.20
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ + T PY C CG+ F ++ L HQ
Sbjct: 2 SSGSSGTGENPYECCECGKVFS-----RKDQLVSHQ 32
Score = 28.6 bits (65), Expect = 0.70
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
TG PY+C C ++ L H+ THS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 26.7 bits (60), Expect = 3.6
Identities = 11/35 (31%), Positives = 12/35 (34%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCG 52
E Y C C K FS+ L H H G
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 26.3 bits (59), Expect = 5.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C K F + + H
Sbjct: 13 YECCECGKVFSRKDQLVSH 31
Score = 25.5 bits (57), Expect = 7.7
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
PY+C +C ++H++
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT 34
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 2e-07
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP C CG AF KS HQ H D K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 41.8 bits (99), Expect = 1e-05
Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 29/68 (42%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S TGE+P +C C AF K L I H R H
Sbjct: 6 SGTGEKPCKCTECGKAFCWKSQL-----------------------------IMHQRTHV 36
Query: 304 DEKPFNCS 311
D+K S
Sbjct: 37 DDKHSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P C C F S L+ H+R H + K +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 36.8 bits (86), Expect = 9e-04
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKP C+ C K F K + H R
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT 34
Score = 34.5 bits (80), Expect = 0.006
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG F +H R H K
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 29.4 bits (67), Expect = 0.42
Identities = 12/91 (13%), Positives = 18/91 (19%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + T KP C CG++F
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFC-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
S L H R H ++
Sbjct: 24 ----------WKSQLIMHQRT-HVDDKHSGP 43
Score = 29.1 bits (66), Expect = 0.51
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
TG KP +C C ++ L H+ TH
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KP KCT+C + S + H+R
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT 34
Score = 26.0 bits (58), Expect = 5.9
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRIKHSQHEGK--YVCN 750
CT C F + S LI H+R H +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRT----HVDDKHSGPS 44
Score = 26.0 bits (58), Expect = 7.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
+CT C K F + I H
Sbjct: 13 CKCTECGKAFCWKSQLIMH 31
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 48.4 bits (115), Expect = 2e-07
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVN-LHLGKTKS-------FNCNVCNYSSSLKWNLI 296
+ K C+ F H L THV H+G + C S K+ L+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 297 QHYRIHTDEKPFNCS 311
H R+HT EK S
Sbjct: 80 NHIRVHTGEKSGPSS 94
Score = 45.3 bits (107), Expect = 3e-06
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 167 IHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGHV 226
I +C ++F T + + H +H + C R+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREG--------- 69
Query: 227 DIKPYKQLSNLQSHIRISHTGERPFQC 253
K +K L +HIR+ HTGE+
Sbjct: 70 --KSFKAKYKLVNHIRV-HTGEKSGPS 93
Score = 41.5 bits (97), Expect = 8e-05
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 368 CWKCGFKTSVLNELKAHIKSHHFPKQPSI--------CAVCGDTFKTNYNYFVHMRRHTG 419
C S ++EL H+ H C G +FK Y H+R HTG
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 420 FKPYQC 425
K
Sbjct: 88 EKSGPS 93
Score = 38.8 bits (90), Expect = 6e-04
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 42 IHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHT--SNKKIYY----KCDKCNKTYKSKYKF 95
I C + F + L H+ H + + +C + K++K+KYK
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 96 ERHKNTHVTE 105
H H E
Sbjct: 79 VNHIRVHTGE 88
Score = 36.9 bits (85), Expect = 0.003
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRI 139
C++T+ + ++ H E C C + +Y H+R+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY-WEECPREGKSFKAKYKLVNHIRV 84
Query: 140 HLNIKPYAC 148
H K
Sbjct: 85 HTGEKSGPS 93
Score = 34.2 bits (78), Expect = 0.025
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 602 CLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
C +F L+NH R+H K +
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 33.0 bits (75), Expect = 0.063
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 417 HTGFKPYQCKTCNASYASMRVLQHH-EITHSKTLKFP--------CINCGKYFTKLEYMI 467
K+C+ ++++M L H + H + C GK F ++
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 468 KHMKRH 473
H++ H
Sbjct: 80 NHIRVH 85
Score = 31.1 bits (70), Expect = 0.34
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 28/92 (30%)
Query: 711 HLKVRRFSCTNCSLNFTYLSNLIRHRRIKH--SQHEGKYVCNYCGKSYIDKRDYTNHVSV 768
+C F+ + L+ H ++H + +VC +
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE--------------- 64
Query: 769 HMERKSGYTQRCHKCNATFRIKKFLTRHMKTH 800
C + +F+ K L H++ H
Sbjct: 65 -----------CPREGKSFKAKYKLVNHIRVH 85
Score = 30.7 bits (69), Expect = 0.48
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 593 IHGKDRPFSCLLCNNTFAQLSTLLNH-ERIHDNHKPYKCTKC 633
I C+ TF+ + L+ H H C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Score = 29.6 bits (66), Expect = 0.99
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 32/105 (30%)
Query: 500 LHFTQNKHPCNRCNASFSSMVQLSCHQIRAH--GKQKQRFMCHRCGIINLKRKYHVYHLK 557
+ Q P C+ +FS+M +L H H G ++ +C+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-------------- 64
Query: 558 YECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSC 602
C P + FK +K H+R+H ++
Sbjct: 65 --C-------PREGKSFK-------AKYKLVNHIRVHTGEKSGPS 93
Score = 28.8 bits (64), Expect = 1.8
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 688 PAKCKICNQSFALFSNLNAHYNK-HLKVRRFS--------CTNCSLNFTYLSNLIRHRRI 738
K C+++F+ L H H+ + C +F L+ H R+
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Score = 28.8 bits (64), Expect = 2.1
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 9/68 (13%)
Query: 118 YPCSFCAYRGRYRYHFKAHL-RIHLNIKPYACKYC--------GNAFAHKSSRDAHQNIH 168
P C + H+ H+ C G +F K H +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 169 TDLKPYLC 176
T K
Sbjct: 86 TGEKSGPS 93
Score = 28.8 bits (64), Expect = 2.2
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 11/62 (17%)
Query: 776 YTQRCHKCNATFRIKKFLTRHMKTHLIQYR-----------CTRCNKTFKQNTSFIRHSL 824
++ C+ TF L H+ + C R K+FK + H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 825 KH 826
H
Sbjct: 84 VH 85
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY C CG +F+ H HT KP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 42.5 bits (101), Expect = 9e-06
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 29/68 (42%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S GE+P+QC C +F + L QH+ HT
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRL-----------------------------TQHWITHT 36
Query: 304 DEKPFNCS 311
EKP S
Sbjct: 37 REKPSGPS 44
Score = 41.8 bits (99), Expect = 1e-05
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++P+ C C +F+ L H H KP +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ CS C K F + H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C+ CG +F +Y H HT KP
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 31.0 bits (71), Expect = 0.10
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G KPYQC C S++ L H ITH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 14/91 (15%), Positives = 18/91 (19%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + KPY C CG+SF
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
L H HT E+P
Sbjct: 24 ----------GSYRLTQHWIT-HTREKPSGP 43
Score = 27.5 bits (62), Expect = 2.1
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ KPY+C++C S H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ + PY C C +F+ K HQ +HT KP
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 42.5 bits (101), Expect = 9e-06
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTK 632
P+ C C +F+ LL H+R+H KP +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 40.6 bits (96), Expect = 4e-05
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S S G P++C C +F K L + H
Sbjct: 2 SSGS-SGAGVNPYKCSQCEKSFSGKLRL-----------------------------LVH 31
Query: 299 YRIHTDEKPFNCS 311
R+HT EKP S
Sbjct: 32 QRMHTREKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
P+ CS CEK F K+ + H R+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 387 SHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
S P C+ C +F VH R HT KP
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 31.4 bits (72), Expect = 0.091
Identities = 13/91 (14%), Positives = 19/91 (20%), Gaps = 49/91 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + + PY C C +SF
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFS-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
L H R+ HT E+P
Sbjct: 24 ----------GKLRLLVHQRM-HTREKPSGP 43
Score = 29.0 bits (66), Expect = 0.52
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G PY+C C S++ L H+ H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 28.7 bits (65), Expect = 0.76
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
PYKC++C S L H+R+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 4e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ K + C CG F KS + HQ IHT KP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 18/68 (26%), Positives = 20/68 (29%), Gaps = 29/68 (42%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S + + QC C F K HL QH RIHT
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHL-----------------------------NQHQRIHT 36
Query: 304 DEKPFNCS 311
EKP S
Sbjct: 37 GEKPSGPS 44
Score = 41.0 bits (97), Expect = 3e-05
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ K C C + F K H+ H RI
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+ C C F S L H+RIH KP +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.043
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 386 KSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
S + C CG F + H R HTG KP +
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.053
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ + K + C CG+ F + +L HQ
Sbjct: 3 SGSSGSSTKSHQCHECGRGFT-----LKSHLNQHQ 32
Score = 29.1 bits (66), Expect = 0.47
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+ K +QC C + L H+ H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 29.1 bits (66), Expect = 0.59
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ + K ++C +C + S+ H+RI
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
Score = 26.4 bits (59), Expect = 4.5
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 20/51 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ C+ C + + S+L H RI HTGE+P
Sbjct: 13 HQCHECGRG-------------------FTLKSHLNQHQRI-HTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.9
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
++C C + F + +H
Sbjct: 13 HQCHECGRGFTLKSHLNQH 31
Score = 25.6 bits (57), Expect = 8.0
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 707 HYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
+ + C C FT S+L +H+RI
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 4e-07
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KPY CK C F + H+ +HT +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 43.3 bits (103), Expect = 5e-06
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 29/68 (42%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S +G++P++CK C F + HL QH R+HT
Sbjct: 6 SGSGKKPYECKECRKTFIQIGHL-----------------------------NQHKRVHT 36
Query: 304 DEKPFNCS 311
E+ S
Sbjct: 37 GERSSGPS 44
Score = 41.4 bits (98), Expect = 2e-05
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
+P+ C C TF Q+ L H+R+H +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 40.6 bits (96), Expect = 5e-05
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ +KP+ C C K F Q H+ H R+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34
Score = 34.8 bits (81), Expect = 0.005
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 386 KSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCK 426
S K+P C C TF + H R HTG +
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 32.1 bits (74), Expect = 0.037
Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 49/92 (53%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
+ + + KPY C C ++F
Sbjct: 2 SSGSSGSGKKPYECKECRKTFI-------------------------------------- 23
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPFQCK 254
Q+ +L H R+ HTGER
Sbjct: 24 ----------QIGHLNQHKRV-HTGERSSGPS 44
Score = 29.0 bits (66), Expect = 0.56
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G KPY+CK C ++ + L H+ H+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 27.1 bits (61), Expect = 2.9
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY+C +C + + + H+R+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34
Score = 26.0 bits (58), Expect = 7.1
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACK 149
Y C C H H R+H +
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ + C CG F S+ H+ IHT KP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 29/70 (41%)
Query: 242 RISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRI 301
S GER +C C F +S N IQH RI
Sbjct: 4 GSSGHGERGHRCSDCGKFF-------------------------LQAS----NFIQHRRI 34
Query: 302 HTDEKPFNCS 311
HT EKP S
Sbjct: 35 HTGEKPSGPS 44
Score = 41.8 bits (99), Expect = 1e-05
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+R C C F Q S + H RIH KP +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-04
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
E+ CS C K F Q + H RI
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 34.8 bits (81), Expect = 0.005
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 384 HIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
S H + C+ CG F N+ H R HTG KP +
Sbjct: 3 SGSSGHGER-GHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 31.4 bits (72), Expect = 0.073
Identities = 15/90 (16%), Positives = 20/90 (22%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ + + C CG+ F
Sbjct: 3 SGSSGHGERGHRCSDCGKFFL--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
Q SN H RI HTGE+P
Sbjct: 24 ---------QASNFIQHRRI-HTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.14
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ + ++C+ C SN + H RI
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 29.0 bits (66), Expect = 0.59
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G + ++C C + H H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.1 bits (61), Expect = 2.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
+RC+ C K F Q ++FI+H
Sbjct: 13 HRCSDCGKFFLQASNFIQH 31
Score = 26.0 bits (58), Expect = 7.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 707 HYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
+ R C++C F SN I+HRRI
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 6e-07
Identities = 10/41 (24%), Positives = 11/41 (26%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+PY C CG F S H H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GERP+ C C F HL I+H
Sbjct: 2 SSGSS-GSGERPYGCNECGKNFGRHSHL-----------------------------IEH 31
Query: 299 YRIHTDEKPFNCS 311
+ H EK S
Sbjct: 32 LKRHFREKSSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+RP+ C C F + S L+ H + H K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 39.4 bits (93), Expect = 1e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ E+P+ C+ C K F + H+ HL+
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
Score = 32.5 bits (75), Expect = 0.028
Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ + +PY C CG++F
Sbjct: 3 SGSSGSGERPYGCNECGKNFG--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ S+L H++ H E+
Sbjct: 24 ---------RHSHLIEHLKR-HFREKSSGP 43
Score = 32.1 bits (74), Expect = 0.045
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
P C CG F + + H++RH K +
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 30.6 bits (70), Expect = 0.15
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G +PY C C ++ L H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRC 51
ER Y C C K F + + L H+ H + +
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 27.9 bits (63), Expect = 1.4
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKC 658
+PY C +C + S+ + H + + ++
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 25.6 bits (57), Expect = 8.4
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYAC 148
Y C+ C H HL+ H K
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 45.6 bits (109), Expect = 6e-07
Identities = 11/39 (28%), Positives = 12/39 (30%)
Query: 138 RIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
PY C CG AF K +HQ H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.5 bits (101), Expect = 9e-06
Identities = 14/67 (20%), Positives = 18/67 (26%), Gaps = 29/67 (43%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
+GE P++C C AF K L I H R H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQL-----------------------------ISHQRTHA 34
Query: 304 DEKPFNC 310
E +
Sbjct: 35 GESGPSS 41
Score = 40.6 bits (96), Expect = 4e-05
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 592 RIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
+ P+ C C F + L++H+R H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ E P+ CS C K F +K + +H R
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRT 32
Score = 32.5 bits (75), Expect = 0.026
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C+ CG F H R H G
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 28.2 bits (64), Expect = 0.89
Identities = 13/89 (14%), Positives = 18/89 (20%), Gaps = 49/89 (55%)
Query: 165 QNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILG 224
+ + PY C CG++F
Sbjct: 2 SSGSSGENPYECSECGKAFN---------------------------------------- 21
Query: 225 HVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ L SH R H GE
Sbjct: 22 --------RKDQLISHQRT-HAGESGPSS 41
Score = 27.1 bits (61), Expect = 2.0
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 415 RRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G PY+C C ++ L H+ TH+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 27.1 bits (61), Expect = 2.6
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCG 52
E Y C C K F++ L H H G
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 25.9 bits (58), Expect = 5.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C+ C K F + I H
Sbjct: 11 YECSECGKAFNRKDQLISH 29
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-07
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+P+ C CG F +S H +H+ K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 29/68 (42%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S +GERPF+C C F + HL H R+H+
Sbjct: 6 SGSGERPFKCNECGKGFGRRSHL-----------------------------AGHLRLHS 36
Query: 304 DEKPFNCS 311
EK S
Sbjct: 37 REKSSGPS 44
Score = 41.8 bits (99), Expect = 1e-05
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
+RPF C C F + S L H R+H K +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ E+PF C+ C K F ++ H+ HLR+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
Score = 34.0 bits (79), Expect = 0.010
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG F + H+R H+ K
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 30.2 bits (69), Expect = 0.22
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 49/90 (54%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
+ + +P+ C CG+ F
Sbjct: 3 SGSSGSGERPFKCNECGKGFG--------------------------------------- 23
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ S+L H+R+ H+ E+
Sbjct: 24 ---------RRSHLAGHLRL-HSREKSSGP 43
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G +P++C C + L H HS
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 27.1 bits (61), Expect = 2.9
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+P+KC +C S+ H R+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 45.2 bits (108), Expect = 8e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ C +C +FR +K+HLRI
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
KPY C+ CG F H + +H IHT P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPY 628
G ++P+ C +C F L TL +H RIH P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 29/65 (44%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S GE+P+ C+ C F+ L++H+ RIHT
Sbjct: 5 SSGGEKPYPCEICGTRFRHLQTLKSHL-----------------------------RIHT 35
Query: 304 DEKPF 308
P
Sbjct: 36 GSGPS 40
Score = 36.3 bits (85), Expect = 0.001
Identities = 18/89 (20%), Positives = 20/89 (22%), Gaps = 49/89 (55%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHI 222
KPY C CG FR
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFR-------------------------------------- 22
Query: 223 LGHVDIKPYKQLSNLQSHIRISHTGERPF 251
L L+SH+RI HTG P
Sbjct: 23 ----------HLQTLKSHLRI-HTGSGPS 40
Score = 34.0 bits (79), Expect = 0.007
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIH 43
E+ Y C +C +F L TLK H+ IH
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 34.0 bits (79), Expect = 0.009
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G KPY C+ C + ++ L+ H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 33.2 bits (77), Expect = 0.013
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPY 423
C +CG F+ H+R HTG P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 29.0 bits (66), Expect = 0.50
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYA 147
YPC C R R+ K+HLRIH P +
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 28.2 bits (64), Expect = 0.92
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPY C C R L +H RI
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 26.7 bits (60), Expect = 3.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRI 738
+ C C F +L L H RI
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRI 33
Score = 25.5 bits (57), Expect = 7.8
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 39 HVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNK 76
G +P C CG F L L +H+R HT +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSG 38
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 44.9 bits (107), Expect = 1e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
+ Y C+ CG +F K S H+ IHT P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 29/66 (43%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
+G+R ++C+ C +F++K L H RIHT
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSL-----------------------------TLHERIHT 34
Query: 304 DEKPFN 309
P +
Sbjct: 35 GSGPSS 40
Score = 37.6 bits (88), Expect = 5e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ ++ + C C K FRQK + H RI
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERI 32
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHKPY 628
R + C C +F Q +L HERIH P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.5 bits (67), Expect = 0.33
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPY 423
C CG +F+ + +H R HTG P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 415 RRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
+G + Y+C+ C S+ L HE H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 27.2 bits (61), Expect = 2.3
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 165 QNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ + + Y C CG+SFR ++ +L H+
Sbjct: 2 SSGSSGQRVYECQECGKSFR-----QKGSLTLHE 30
Score = 26.8 bits (60), Expect = 2.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C C K+F+Q S H
Sbjct: 11 YECQECGKSFRQKGSLTLH 29
Score = 25.6 bits (57), Expect = 7.4
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 20/49 (40%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPF 251
Y C C K+ ++Q +L H RI HTG P
Sbjct: 11 YECQECGKS-------------------FRQKGSLTLHERI-HTGSGPS 39
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.9 bits (107), Expect = 1e-06
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
K + C CG F + S+ HQ +H K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 39.1 bits (92), Expect = 1e-04
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++ +C C F +S L H+R+H K +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 38.0 bits (89), Expect = 4e-04
Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S +GE+ C C K+F Y S L H
Sbjct: 2 SSGSS-GSGEKSHTCDECG--------------------KNFC-----YIS----ALRIH 31
Query: 299 YRIHTDEKPFNCS 311
R+H EK S
Sbjct: 32 QRVHMGEKCSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EK C C K F ++ H R+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
Score = 31.4 bits (72), Expect = 0.072
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
+ + K + C CG++F + ++ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 31.0 bits (71), Expect = 0.11
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G K + C C ++ + L+ H+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 29.5 bits (67), Expect = 0.37
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
K + C +C + +S H+R+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
Score = 29.5 bits (67), Expect = 0.40
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
C CG F +H R H G K
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.9 bits (107), Expect = 1e-06
Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 30/73 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S S TGE+PFQCK C F ++S SL +H
Sbjct: 2 SSGS-SGTGEKPFQCKECGMNF-------------------------SWSCSL----FKH 31
Query: 299 YRIHTDEKPFNCS 311
R H P S
Sbjct: 32 LRSHERTDPSGPS 44
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 135 AHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP+ CK CG F+ S H H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.8 bits (99), Expect = 2e-05
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
++PF C C F+ +L H R H+ P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
T EKPF C C F + HLR
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
TG KP+QCK C +++ L H +H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
Score = 32.9 bits (76), Expect = 0.021
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
P C CG F + + F H+R H P
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 31.0 bits (71), Expect = 0.094
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCG 52
E+ + C C FS +L +H+ H +T P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
+ + T KP+ C CG +F + +H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKH 31
Score = 27.9 bits (63), Expect = 1.2
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KP++C +C + + H R
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 26.0 bits (58), Expect = 5.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRI 738
F C C +NF++ +L +H R
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRS 34
Score = 26.0 bits (58), Expect = 7.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 804 YRCTRCNKTFKQNTSFIRHSLKH 826
++C C F + S +H H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSH 35
Score = 26.0 bits (58), Expect = 7.3
Identities = 7/51 (13%), Positives = 11/51 (21%), Gaps = 20/51 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ C C + +L H+R H P
Sbjct: 13 FQCKECGMN-------------------FSWSCSLFKHLRS-HERTDPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KP+ C C AF+ KS HQ H + KP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 43.3 bits (103), Expect = 5e-06
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 29/68 (42%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
+GE+PF C C AF S K L+ H + H
Sbjct: 4 GSSGEKPFGCSCCEKAF-----------------------------SSKSYLLVHQQTHA 34
Query: 304 DEKPFNCS 311
+EKP S
Sbjct: 35 EEKPSGPS 42
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 592 RIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF C C F+ S LL H++ H KP +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 37.1 bits (87), Expect = 6e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKPF CS CEK F K ++ H +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQT 32
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 386 KSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
S ++P C+ C F + VH + H KP +
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 29.4 bits (67), Expect = 0.39
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 417 HTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G KP+ C C +++S L H+ TH+
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 26.3 bits (59), Expect = 5.0
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 20/51 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
+ C+ C K + S L H + H E+P
Sbjct: 11 FGCSCCEKA-------------------FSSKSYLLVHQQT-HAEEKPSGP 41
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 43.7 bits (104), Expect = 3e-06
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
EKP+ C C +F Q H++ H+ I
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 42.9 bits (102), Expect = 6e-06
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
KPY C+ CG F + AH IHT P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPY 628
G ++P+ C C F Q++ L H IH P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLG 275
S GE+P++C+ C F + HL HV +H G
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
G KPY+C+TC A + + L+ H + H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 32.1 bits (74), Expect = 0.034
Identities = 16/88 (18%), Positives = 22/88 (25%), Gaps = 49/88 (55%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHIL 223
KPY C TCG F
Sbjct: 2 SSGSSGGEKPYKCETCGARFV--------------------------------------- 22
Query: 224 GHVDIKPYKQLSNLQSHIRISHTGERPF 251
Q+++L++H+ I HTG P
Sbjct: 23 ---------QVAHLRAHVLI-HTGSGPS 40
Score = 30.2 bits (69), Expect = 0.18
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPY 423
C CG F + H+ HTG P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 29.8 bits (68), Expect = 0.28
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIH 43
E+ Y C C +F ++ L+ HV IH
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 29.0 bits (66), Expect = 0.47
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
KPYKC C +++ AH I
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 25.6 bits (57), Expect = 9.5
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 796 HMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
+ + Y+C C F Q H L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
TD K +NC+ C K F + H+ H +I
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
Score = 40.3 bits (95), Expect = 5e-05
Identities = 12/41 (29%), Positives = 13/41 (31%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ K Y C CG AF HQ IHT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 30/72 (41%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S T + + C C AF HL +H
Sbjct: 2 SSGSS-GTDSKSYNCNECGKAFTRIFHL-----------------------------TRH 31
Query: 299 YRIHTDEKPFNC 310
+IHT + +
Sbjct: 32 QKIHTRKSGPSS 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
+ ++C C F ++ L H++IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.2 bits (74), Expect = 0.035
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
T K Y C C ++ + L H+ H+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 32.2 bits (74), Expect = 0.039
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 164 HQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
+ TD K Y C CG++F + RH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 28.3 bits (64), Expect = 0.92
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ K Y C +C + + + H++I
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
Score = 27.2 bits (61), Expect = 2.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 17 DERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCG 52
D ++Y+C C K F+++ L RH IH + G
Sbjct: 9 DSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 25.6 bits (57), Expect = 9.0
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 796 HMKTHLIQ--YRCTRCNKTFKQNTSFIRH 822
+ Y C C K F + RH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 43.4 bits (103), Expect = 4e-06
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
PY C CG +F + S HQ + P
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 37.3 bits (87), Expect = 6e-04
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYK 629
G + P+ C C +F Q +L H+R P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 36.9 bits (86), Expect = 8e-04
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 29/65 (44%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
S GE P+ C C +F ++ +L H R +
Sbjct: 5 SSGGETPYLCGQCGKSFTQRG-----------------------------SLAVHQRSCS 35
Query: 304 DEKPF 308
P
Sbjct: 36 QSGPS 40
Score = 34.9 bits (81), Expect = 0.004
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
E P+ C C K F Q+ + H R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 33.4 bits (77), Expect = 0.013
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPY 423
P +C CG +F + VH R + P
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 29.9 bits (68), Expect = 0.23
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
PYLC CG+SF +R +L HQ
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFT-----QRGSLAVHQ 31
Score = 29.2 bits (66), Expect = 0.51
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
G PY C C S+ L H+ + S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 26.5 bits (59), Expect = 4.3
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 20/49 (40%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPF 251
YLC C K++ R +L H R + P
Sbjct: 12 YLCGQCGKSFTQR-------------------GSLAVHQRS-CSQSGPS 40
Score = 26.1 bits (58), Expect = 6.2
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIH 43
E Y C C K F++ +L H
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 25.3 bits (56), Expect = 9.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 804 YRCTRCNKTFKQNTSFIRH 822
Y C +C K+F Q S H
Sbjct: 12 YLCGQCGKSFTQRGSLAVH 30
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 43.9 bits (103), Expect = 4e-06
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
Y C C R + K H+R H +++PY C YC +F K + H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 42.8 bits (100), Expect = 1e-05
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 282 CNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
C C L +H R HTD +P++C+ C F+ K ++ H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 41.6 bits (97), Expect = 2e-05
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 251 FQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
+ C+ C K+ L+ H+ H + ++C CN+S K NL +H + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV-RPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 38.5 bits (89), Expect = 3e-04
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 21 YHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKK 77
Y C C + K + LK+H+ H +P C YC F G L H++ +KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSKK 57
Score = 37.8 bits (87), Expect = 6e-04
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 229 KPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLG 275
K+ S L+ HIR +HT RP+ C YCN++FK K +L H+
Sbjct: 9 IRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 37.8 bits (87), Expect = 6e-04
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 146 YACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
Y C+ CG S H HTD++PY C C SF+T + +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 37.0 bits (85), Expect = 0.001
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 397 CAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
C CG K H+R HT +PY C CN S+ + L H + +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 35.8 bits (82), Expect = 0.003
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 746 KYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTH 800
KY+C CG H+ H + + C CN +F+ K LT+HMK+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRP---YHCTYCNFSFKTKGNLTKHMKSK 52
Score = 33.9 bits (77), Expect = 0.013
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 602 CLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIY 650
C C + S L H R H + +PY CT CN+S + N H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 33.9 bits (77), Expect = 0.014
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
+ H+R H RP+ C CN +F L H + + K
Sbjct: 14 PSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 32.0 bits (72), Expect = 0.063
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 423 YQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRH 473
Y C+ C +L+ H TH+ + C C F + KHMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 32.0 bits (72), Expect = 0.067
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 368 CWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFK 421
C +CG + + LK HI++H +P C C +FKT N HM+ K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHT-DVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 31.6 bits (71), Expect = 0.092
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 50 RCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTE 105
C CG L HIR HT + Y C CN ++K+K +H +
Sbjct: 3 ICEECGIRXKKPSMLKKHIR-THTDVRP--YHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 31.2 bits (70), Expect = 0.12
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 480 VCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQ 535
+CE C +L++H+ H + C CN SF + L+ H ++ K+
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAHSKK 57
Score = 30.8 bits (69), Expect = 0.19
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRI 139
Y C++C K ++H TH Y C++C + + + + H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP----------YHCTYCNFSFKTKGNLTKHMKS 51
Query: 140 H 140
Sbjct: 52 K 52
Score = 30.8 bits (69), Expect = 0.20
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 690 KCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRI 738
C+ C S L H H VR + CT C+ +F NL +H +
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 30.1 bits (67), Expect = 0.29
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLH 501
K+ C CG K + KH++ H + C C+ + L +HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 29.7 bits (66), Expect = 0.51
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 779 RCHKCNATFRIKKFLTRHMKTHLIQ--YRCTRCNKTFKQNTSFIRHSLKH 826
C +C + L +H++TH Y CT CN +FK + +H
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 28.5 bits (63), Expect = 1.1
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 716 RFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERK 773
++ C C + S L +H R Y C YC S+ K + T H+ K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTD--VRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 27.4 bits (60), Expect = 2.6
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 174 YLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTLDNHILGH 225
Y+C CG + +++K+H + H DVR Y C +CN ++K + L H+
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 25.8 bits (56), Expect = 9.2
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 628 YKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNE 684
Y C +C + S H R + + C C FS K L +H K ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKS-KAHS 55
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.5 bits (104), Expect = 8e-06
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 15 SQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTS 74
+++ Y C LC+ + S L H + C YC F H +
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH--ESKCE 66
Query: 75 NKKIYYKCDKCNKTYKSKYKFERHKNTHVTENSEYPC 111
KK C +C +T+KS + RH+ +N+ P
Sbjct: 67 YKK--LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPT 101
Score = 42.6 bits (99), Expect = 5e-05
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 247 GERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
+ +QC+ CN +H L C++ +S LK Q + + K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELK----QEHESKCEYK 68
Query: 307 PFNCSLCEKQFRQKIHVKNHLRIIHNMN 334
C C + F+ + H +HN N
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 40.3 bits (93), Expect = 3e-04
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 739 KHSQHEGKYVCNYCGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMK 798
+++ Y C C + +H ER C C+ F + H
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSH-----ERLCRNAAVCPYCSLRFFSPELKQEHES 63
Query: 799 THLI-QYRCTRCNKTFKQNTSFIRHSLKHFNSSN 831
+ C C +TFK + S RH ++ N +N
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNN 97
Score = 39.1 bits (90), Expect = 7e-04
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 115 RNIYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
+ +Y C C + +H R+ N C YC F + H++ + K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES-KCEYKKL 70
Query: 175 LCLTCGQSFRTFNLMKRHNLCDHQ 198
CL C ++F++ + RH + H
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHN 94
Score = 36.8 bits (84), Expect = 0.004
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 597 DRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVF 656
+ C LCN + L +HER+ N C C+ K HE +
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES-KCEYKKL 70
Query: 657 KCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAK 690
C F + F + RH+ H+ + AP
Sbjct: 71 TCLECMRTFKSSFS--IWRHQVEVHNQNNMAPTS 102
Score = 36.0 bits (82), Expect = 0.009
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 304 DEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRHCEVCDKSNN 363
+++ + C LC + + +H R+ N C +C + H C+
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQ--EHESKCEYKK- 69
Query: 364 SYLLCWKCGFKTSVLNELKAHIKSHH 389
L C +C + H H
Sbjct: 70 --LTCLECMRTFKSSFSIWRHQVEVH 93
Score = 35.3 bits (80), Expect = 0.016
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 641 SNKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFAL 700
S+ + V++C + N S+ H ++ + A C C+ F
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLE--QGSHERLCRNA-----AVCPYCSLRFFS 54
Query: 701 FSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQH 743
H +K + ++ +C C F ++ RH+ H+Q+
Sbjct: 55 PELKQEHESKC-EYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 34.9 bits (79), Expect = 0.018
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 392 KQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKF 451
K+ C +C + H R C C+ + S + Q HE + + K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHE-SKCEYKKL 70
Query: 452 PCINCGKYFTKLEYMIKHMKRHFNTN 477
C+ C + F + +H N N
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 34.1 bits (77), Expect = 0.039
Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFCAYRGRYRYHFKAHLRI 139
Y+C CN S + H+ CRN C +C+ R + H
Sbjct: 17 YQCRLCNAKLSSLLEQGSHE------------RLCRNAAVCPYCSLRFFSPELKQEH-ES 63
Query: 140 HLNIKPYACKYCGNAFAHKSSRDAHQ 165
K C C F S HQ
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 33.7 bits (76), Expect = 0.052
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 451 FPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCN 510
+ C C + L H + N VC CS ++ Q H + K C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCL 73
Query: 511 RCNASFSSMVQLSCHQIRAHGKQ 533
C +F S + HQ+ H +
Sbjct: 74 ECMRTFKSSFSIWRHQVEVHNQN 96
Score = 32.2 bits (72), Expect = 0.18
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 13 HESQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRH 72
HE CP CS +F + H + + + C C + F + H + H
Sbjct: 35 HERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Query: 73 TSN 75
N
Sbjct: 94 NQN 96
Score = 30.3 bits (67), Expect = 0.89
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 690 KCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVC 749
+C++CN + +H + L C CSL F H K C
Sbjct: 18 QCRLCNAKLSSLLEQGSH--ERLCRNAAVCPYCSLRFFSPELKQEHES---KCEYKKLTC 72
Query: 750 NYCGKSYIDKRDYTNH-VSVHME 771
C +++ H V VH +
Sbjct: 73 LECMRTFKSSFSIWRHQVEVHNQ 95
Score = 29.9 bits (66), Expect = 1.2
Identities = 13/75 (17%), Positives = 18/75 (24%), Gaps = 9/75 (12%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDI-------KPYKQLSNLQSHIRISHTGERPFQCKY 255
Y C CN +H + + Q H S + C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHE--SKCEYKKLTCLE 74
Query: 256 CNYAFKEKHHLETHV 270
C FK + H
Sbjct: 75 CMRTFKSSFSIWRHQ 89
Score = 27.9 bits (61), Expect = 5.8
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 368 CWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
C C K S L E +H + ++C C F + H +K C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLE 74
Query: 428 CNASYASMRVLQHHEIT 444
C ++ S + H++
Sbjct: 75 CMRTFKSSFSIWRHQVE 91
Score = 27.6 bits (60), Expect = 6.1
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 481 CEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCH 540
C +C+ ++ H L +N C C+ F S H+ + K+ C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECM 76
Query: 541 R 541
R
Sbjct: 77 R 77
Score = 27.2 bits (59), Expect = 8.3
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 273 HLGKTKSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNH 326
+ + + C +CN S H R+ + C C +F + H
Sbjct: 10 PVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH 61
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 42.3 bits (100), Expect = 1e-05
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 590 HMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIHDNHKPYKCT 631
++PF+C C F++ L H R H KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 40.4 bits (95), Expect = 5e-05
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 135 AHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC 176
+ KP+AC + CG F+ H+ H+ +KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 37.7 bits (88), Expect = 5e-04
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 28/73 (38%)
Query: 239 SHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQH 298
S TGE+PF C + C + S L +H
Sbjct: 2 SSGSS-GTGEKPFACTWPG---------------------------CGWRFSRSDELSRH 33
Query: 299 YRIHTDEKPFNCS 311
R H+ KP S
Sbjct: 34 RRSHSGVKPSGPS 46
Score = 35.0 bits (81), Expect = 0.004
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 298 HYRIHTDEKPFNCS--LCEKQFRQKIHVKNHLRI 329
T EKPF C+ C +F + + H R
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 31.5 bits (72), Expect = 0.085
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 383 AHIKSHHFPKQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQCKT 427
+ S K P C CG F + H R H+G KP +
Sbjct: 2 SSGSSGTGEK-PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 28.0 bits (63), Expect = 1.4
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 18 ERTYHC--PLCSKQFSKLTTLKRHVGIHMKTQPVRC 51
E+ + C P C +FS+ L RH H +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 27.3 bits (61), Expect = 2.4
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 26/70 (37%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKR 472
TG KP+ C +P CG F++ + + +H +
Sbjct: 3 SGSSGTGEKPFACT------------------------WP--GCGWRFSRSDELSRHRRS 36
Query: 473 HFNTNKPVCE 482
H
Sbjct: 37 HSGVKPSGPS 46
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 42.3 bits (99), Expect = 2e-05
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 235 SNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWN 294
+ +I H G+R +C C F + L K+ C C S +
Sbjct: 4 GSSGKRQKI-HLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAA 54
Query: 295 LIQHYRIHTDEKPFNCS 311
L + + +K S
Sbjct: 55 LNKDEGNESGKKTSGPS 71
Score = 40.8 bits (95), Expect = 6e-05
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSF 183
+IHL + C CG F +S+ + K +C C +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDS 49
Score = 37.7 bits (87), Expect = 0.001
Identities = 15/73 (20%), Positives = 20/73 (27%), Gaps = 8/73 (10%)
Query: 159 SSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKDRKTL 218
S Q IH + C CG F +R L + +C C K L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFI-----RRSTLSRR---KTPMCEKCRKDSCQEAAL 55
Query: 219 DNHILGHVDIKPY 231
+ K
Sbjct: 56 NKDEGNESGKKTS 68
Score = 36.2 bits (83), Expect = 0.003
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKR 472
+ H G + +C C + T S+ C C K + + K
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGN 61
Query: 473 H 473
Sbjct: 62 E 62
Score = 36.2 bits (83), Expect = 0.004
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 34 TTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKY 93
+ + IH+ + +C CG F +R T +++ C+KC K +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIF----------IRRSTLSRRKTPMCEKCRKDSCQEA 53
Query: 94 KFERHKNTHVTENSEYP 110
+ + + + P
Sbjct: 54 ALNKDEGNESGKKTSGP 70
Score = 35.8 bits (82), Expect = 0.004
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 583 SKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSN 642
S + +IH DR C C F + ST K C KC + +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAA 54
Query: 643 KLAHERI 649
E
Sbjct: 55 LNKDEGN 61
Score = 34.6 bits (79), Expect = 0.012
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 702 SNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRD 761
+ HL R C+ C + F S L R + +C C K +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK---------TPMCEKCRKDSCQEAA 54
Query: 762 YTNHVSVHMERKS 774
+K+
Sbjct: 55 LNKDEGNESGKKT 67
Score = 33.1 bits (75), Expect = 0.035
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 294 NLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELN 350
+ + +IH ++ CS C F ++ + C+ C K E LN
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-----RKTPMCEKCRKDSCQEAALN 56
Score = 30.0 bits (67), Expect = 0.57
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 140 HLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPY 174
K C+ C +++ + + + K
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 29.2 bits (65), Expect = 0.92
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 765 HVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQYRCTRCNKTFKQNTSFIRHSL 824
+H+ + +Q+C KC F + L+R C +C K Q + +
Sbjct: 9 RQKIHLGDR---SQKCSKCGIIFIRRSTLSRRKT-----PMCEKCRKDSCQEAALNKDEG 60
Query: 825 KH 826
Sbjct: 61 NE 62
Score = 28.5 bits (63), Expect = 1.7
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 438 LQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAHNQVLQRH 497
+ H C CG F + + + P+CE C + L +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 498 MTLH 501
Sbjct: 59 EGNE 62
Score = 28.1 bits (62), Expect = 2.2
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 7/58 (12%)
Query: 389 HFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
H + C+ CG F + + K C+ C L E S
Sbjct: 13 HLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNES 63
Score = 28.1 bits (62), Expect = 2.2
Identities = 6/35 (17%), Positives = 9/35 (25%)
Query: 594 HGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPY 628
+ + C C Q + L E K
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 27.3 bits (60), Expect = 4.7
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 386 KSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPY 423
+S ++ +C C +G K
Sbjct: 31 RSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-04
Identities = 58/475 (12%), Positives = 129/475 (27%), Gaps = 169/475 (35%)
Query: 433 ASMR--VLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKPVCEICSQTMAH 490
S R L H + H L P T ++ ++ FN P
Sbjct: 4 YSTRPLTLSHGSLEHV--LLVP--------TASFFIASQLQEQFNKILP----------- 42
Query: 491 NQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLKRK 550
T F + P ++ +L +F+ + + +L
Sbjct: 43 ------EPTEGFAADDEP--------TTPAELV-----------GKFLGY---VSSLVEP 74
Query: 551 YHVYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLLCNNTFA 610
V + + L L +F++ Y++ +IH A
Sbjct: 75 SKVGQ------FDQVLNLCLT-EFENC--YLEGN---DIH-----------------ALA 105
Query: 611 QLSTLLNHERIHDNHKPYKCTKCNYSARVLSNKLAHERIYHQDHVFKCHINNCIFSTKFY 670
+ LL K + K +AR+++ + ++ +F+ + +
Sbjct: 106 --AKLLQENDT-TLVKTKELIKNYITARIMAKRPFDKK--SNSALFRAVGEG---NAQLV 157
Query: 671 S----------CLRRHRKIFHSNESYAPAKCKICNQSFALFSNL-------NAHYNKHLK 713
+ R ++ ++Y + S S L + + L
Sbjct: 158 AIFGGQGNTDDYFEELRDLY---QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 714 VRRF-SCTNCSLNFTYLSN------LIRHRRIKHSQHEGKY--VCNYCGKSYIDKRDYTN 764
+ + + + + YL + LI ++ H Y G + + R Y
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH------YVVTAKLLGFTPGELRSYLK 268
Query: 765 HVSVHME-------------RKSGYTQ-------------RCHKC--NATFR---IKKFL 793
+ H + +S + RC++ N + ++ L
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 794 T------------RHMKTHLIQYRCTRCNKTFKQNTSFIRHSLKHFNSSNSDNIT 836
++ +Q + N + SL N + + ++
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-VEISL--VNGAKNLVVS 380
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 38.4 bits (89), Expect = 2e-04
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTC 179
K AC+ CG F + H+ H+ KPY
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 36.8 bits (85), Expect = 0.001
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 387 SHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNA 430
S ++ C +CG F+ Y+ H H+G KPY +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48
Score = 36.8 bits (85), Expect = 0.001
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 592 RIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCN 634
+ +C +C F + L H+ H KPY +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 36.1 bits (83), Expect = 0.002
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLC 313
K C +C ++L +H H+ EKP++
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.8 bits (77), Expect = 0.012
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 12 PHESQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYC 54
+ + C +C K F + L RH H +P G
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.1 bits (70), Expect = 0.12
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 197 HQDVRNYLCNFCNKTYKDRKTLDNHILGHVDIKPY 231
+ + C C K ++D L+ H L H KPY
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 30.3 bits (68), Expect = 0.20
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 118 YPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYC 151
C C R YH H H KPY+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.9 bits (67), Expect = 0.25
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
K C +C K FR H+ H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
Score = 28.4 bits (63), Expect = 0.93
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 688 PAKCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCS 723
C+IC + F +LN H H + +S S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 28.4 bits (63), Expect = 0.95
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTE 105
C+ C K ++ Y RHK +H E
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGE 38
Score = 27.6 bits (61), Expect = 1.9
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 172 KPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCN 209
K C CG+ FR + RH L H + Y +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPSS 47
Score = 27.6 bits (61), Expect = 2.0
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 415 RRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINC 456
K C+ C + + L H+++HS +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 37.7 bits (88), Expect = 3e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHL 274
TG +PFQC C+ +F HL H H+
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 36.2 bits (84), Expect = 0.001
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 298 HYRIHTDEKPFNCSLCEKQFRQKIHVKNHLR 328
R T KPF C C++ F + H+ H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 32.3 bits (74), Expect = 0.033
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITH 445
R TG KP+QC C+ S++ L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (69), Expect = 0.14
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 136 HLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIH 168
R IKP+ C C +F+ H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.0 bits (68), Expect = 0.20
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
R +PF C C+ +F++ L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.9 bits (60), Expect = 2.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHM 44
+ + CP C + FS+ L H HM
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 25.8 bits (57), Expect = 6.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 618 HERIHDNHKPYKCTKCN 634
R KP++C C+
Sbjct: 2 STRGSTGIKPFQCPDCD 18
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 37.7 bits (88), Expect = 4e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLC 176
KPY+C C F+ + HQ +HT
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 35.0 bits (81), Expect = 0.004
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 29/67 (43%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSLKWNLIQHYRIHT 303
+GE+P+ C C F + + L +QH ++HT
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRL-----------------------------VQHQKMHT 34
Query: 304 DEKPFNC 310
+ +
Sbjct: 35 VKSGPSS 41
Score = 34.6 bits (80), Expect = 0.005
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 300 RIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP++C+ C++ F + H ++
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKM 32
Score = 33.5 bits (77), Expect = 0.014
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 592 RIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKC 630
++P+SC C TF+ + L+ H+++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 28.8 bits (65), Expect = 0.60
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 386 KSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQC 425
S ++P CA C +TF N H + HT
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 28.4 bits (64), Expect = 0.89
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 417 HTGFKPYQCKTCNASYASMRVLQHHEITHS 446
+G KPY C C +++ L H+ H+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 27.7 bits (62), Expect = 1.6
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCG 52
E+ Y C C + FS L +H +H G
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 27.7 bits (62), Expect = 1.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 804 YRCTRCNKTFKQNTSFIRHSLKH 826
Y C C +TF N ++H H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMH 33
Score = 25.7 bits (57), Expect = 6.6
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 717 FSCTNCSLNFTYLSNLIRHRRI 738
+SC C F+ + L++H+++
Sbjct: 11 YSCAECKETFSDNNRLVQHQKM 32
Score = 25.7 bits (57), Expect = 7.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 168 HTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQ 198
+ KPY C C ++F + L HQ
Sbjct: 5 SSGEKPYSCAECKETFS-----DNNRLVQHQ 30
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 38.5 bits (90), Expect = 5e-04
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 24/82 (29%)
Query: 196 DHQDVRNYLCNF--CNKTYKDRKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQC 253
D +R+++C+ C KTY + S+L++H R HTGE+PF C
Sbjct: 11 DSSRIRSHICSHPGCGKTYF-------------------KSSHLKAHTRT-HTGEKPFSC 50
Query: 254 KY--CNYAFKEKHHLETHVNLH 273
+ C F L H H
Sbjct: 51 SWKGCERRFARSDELSRHRRTH 72
Score = 37.0 bits (86), Expect = 0.001
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 132 HFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIHTDLKPYLC--LTCGQSFRTFN 187
I+ + C + CG + S AH HT KP+ C C + F +
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 188 LMKRH 192
+ RH
Sbjct: 64 ELSRH 68
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 590 HMRIHGKDRPFSCLL--CNNTFAQLSTLLNHERIHDNHKPYKCT 631
+ R C C T+ + S L H R H KP+ C+
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
Score = 35.8 bits (83), Expect = 0.004
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 244 SHTGERPFQCKY--CNYAFKEKHHLETHVNLHLGKTKSFNCNV--CNYSSSLKWNLIQHY 299
+ R C + C + + HL+ H H G+ K F+C+ C + L +H
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE-KPFSCSWKGCERRFARSDELSRHR 69
Query: 300 RIH 302
R H
Sbjct: 70 RTH 72
Score = 33.1 bits (76), Expect = 0.031
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 386 KSHHFPKQPSICAV--CGDTFKTNYNYFVHMRRHTGFKPYQC--KTCNASYASMRVLQHH 441
+ + IC+ CG T+ + + H R HTG KP+ C K C +A L H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 442 EITH 445
TH
Sbjct: 69 RRTH 72
Score = 33.1 bits (76), Expect = 0.032
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 132 HFKAHLRIHLNIKPYACKY--CGNAFAHKSSRDAHQNIH 168
H KAH R H KP++C + C FA H+ H
Sbjct: 34 HLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.0 bits (73), Expect = 0.10
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 14 ESQDERTYHC--PLCSKQFSKLTTLKRHVGIHMKTQPVRCGY--CGQFFLDLGRLNAHIR 69
+S R++ C P C K + K + LK H H +P C + C + F L+ H R
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 29.7 bits (67), Expect = 0.60
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 694 CNQSFALFSNLNAHYNKHLKVRRFSCT--NCSLNFTYLSNLIRHRRI 738
C +++ S+L AH H + FSC+ C F L RHRR
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 29.3 bits (66), Expect = 0.80
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 589 IHMRIHGKDRPFSC--LLCNNTFAQLSTLLNHERIH 622
H R H ++PFSC C FA+ L H R H
Sbjct: 37 AHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.5 bits (64), Expect = 1.7
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 734 RHRRIKHSQHEGK--YVCNY--CGKSYIDKRDYTNHVSVHMERKSGYTQRCHKCNATFRI 789
++C++ CGK+Y ++H+ H +G ++ C+
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFK----SSHLKAHTRTHTG--EKPFSCSWKGCE 56
Query: 790 KKF-----LTRHMKTH 800
++F L+RH +TH
Sbjct: 57 RRFARSDELSRHRRTH 72
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (87), Expect = 5e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGK 276
S GE PF+C C+ F ++++L H H K
Sbjct: 6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 37.1 bits (86), Expect = 7e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 297 QHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
E PF CS C++ F Q+ ++ H R
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 34.1 bits (78), Expect = 0.009
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 590 HMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
+ PF C C+ F Q + L+ HER H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 31.0 bits (70), Expect = 0.093
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTD 170
P+ C C F ++ H+ H
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 29.4 bits (66), Expect = 0.35
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 441 HEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKP 479
+ + F C C + FT+ Y+++H + H + P
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 28.3 bits (63), Expect = 0.92
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHS 446
G P++C C+ + L HE TH+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 27.9 bits (62), Expect = 1.3
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYP 110
+KC KC++ + + +H+ TH ++
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
Score = 27.1 bits (60), Expect = 2.7
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 804 YRCTRCNKTFKQNTSFIRHSLKH 826
++C++C++ F Q ++H H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTH 35
Score = 27.1 bits (60), Expect = 2.8
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 617 NHERIHDNHKPYKCTKCNYSARVLSNKLAHERI 649
+ P+KC+KC+ + + HER
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 26.4 bits (58), Expect = 5.3
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 163 AHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
+ + P+ C C + F N + +H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 25.6 bits (56), Expect = 9.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 18 ERTYHCPLCSKQFSKLTTLKRHVGIH 43
E + C C + F++ L +H H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 41.8 bits (97), Expect = 0.001
Identities = 11/58 (18%), Positives = 15/58 (25%)
Query: 391 PKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKT 448
P I + + YQC C+A S L H +H
Sbjct: 149 PMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 41.8 bits (97), Expect = 0.001
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 476 TNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGK 532
+ + E S ++ + + + + C+ C+A S + L H +HG
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV-ASHGL 205
Score = 35.6 bits (81), Expect = 0.088
Identities = 5/42 (11%), Positives = 9/42 (21%)
Query: 581 MDSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
+ + C +C+ L H H
Sbjct: 162 VSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.2 bits (80), Expect = 0.12
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 710 KHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNY 751
+ C CS +L H H H + +
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLHGNMTLTSS 214
Score = 33.7 bits (76), Expect = 0.33
Identities = 9/40 (22%), Positives = 12/40 (30%)
Query: 4 HQHEEQCMPHESQDERTYHCPLCSKQFSKLTTLKRHVGIH 43
+P + Y C +CS L HV H
Sbjct: 164 KHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 1.1
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 80 YKCDKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSF 122
Y+C C+ S + H +H + + F
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEF 223
Score = 31.7 bits (71), Expect = 1.1
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 803 QYRCTRCNKTFKQNTSFIRHSLKHFNSSNS 832
Y+C C+ H H N
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.4 bits (88), Expect = 0.002
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 690 KCKICNQSFALFSNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVC 749
K I N S+ + +F C C + F+ +L +H R E VC
Sbjct: 48 KTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIR----YTEHTKVC 103
Query: 750 NYCGKSYIDKRDYTNHV 766
C K + +HV
Sbjct: 104 PVCKKEFTSTDSALDHV 120
Score = 38.0 bits (87), Expect = 0.002
Identities = 14/66 (21%), Positives = 24/66 (36%)
Query: 763 TNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKTHLIQYRCTRCNKTFKQNTSFIRH 822
++++ + K+ C C F L +H++ C C K F S + H
Sbjct: 60 SSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDH 119
Query: 823 SLKHFN 828
K N
Sbjct: 120 VCKKHN 125
Score = 37.2 bits (85), Expect = 0.004
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)
Query: 215 RKTLDNHILGHVDIKPYKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHL 274
++ H I + L L+ + +++ +R + + E+ L
Sbjct: 7 DSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRL 66
Query: 275 GKTK---SFNCNVCNYSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIH 331
+K F C +C S +L QH R E C +C+K+F +H+ H
Sbjct: 67 LASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Query: 332 N 332
N
Sbjct: 125 N 125
Score = 37.2 bits (85), Expect = 0.004
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 3 HHQHEEQCMPH--ESQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQFFLD 60
E + S+ + CPLC FS +LK+H I C C + F
Sbjct: 55 QLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTS 112
Query: 61 LGRLNAHIRQRHT 73
H+ ++H
Sbjct: 113 TDSALDHVCKKHN 125
Score = 34.1 bits (77), Expect = 0.055
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 409 NYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIK 468
+Y + + C C ++S L+ H T C C K FT + +
Sbjct: 61 SYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALD 118
Query: 469 HMKRHFN 475
H+ + N
Sbjct: 119 HVCKKHN 125
Score = 33.8 bits (76), Expect = 0.072
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 155 FAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVRNYLCNFCNKTYKD 214
+SS + ++C C F + +K+H +C C K +
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTS 112
Query: 215 RKTLDNHI 222
+ +H+
Sbjct: 113 TDSALDHV 120
Score = 33.4 bits (75), Expect = 0.11
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 133 FKAHLRIHLNIKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
+ L I + C C F+ S H +C C + F + + H
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDH 119
Score = 32.6 bits (73), Expect = 0.15
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 294 NLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFK 341
+ + F C LC F + +K H+R + C C K
Sbjct: 61 SYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKK 108
Score = 31.4 bits (70), Expect = 0.40
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 394 PSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHH 441
+C +C F ++ + H+R C C + S H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDH 119
Score = 31.1 bits (69), Expect = 0.69
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 117 IYPCSFCAYRGRYRYHFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAH 164
+ C C K H+R C C F S H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDH 119
Score = 29.9 bits (66), Expect = 1.4
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 584 KTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLSNK 643
++++ + F C LC F+ +L H R C C +
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSA 116
Query: 644 LAHERIYH 651
L H H
Sbjct: 117 LDHVCKKH 124
Score = 29.5 bits (65), Expect = 1.7
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 6/119 (5%)
Query: 413 HMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKR 472
++ H G L + + + I+ + + Y+ + +
Sbjct: 13 YLSNHKGIF---IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLAS 69
Query: 473 HFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHG 531
++ VC +C + + L++H + +T++ C C F+S H + H
Sbjct: 70 K-AISQFVCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTSTDSALDHVCKKHN 125
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 39.0 bits (90), Expect = 0.008
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 503 TQNKHPCNRCNASFSSMVQLSCHQIRAHG 531
+ + CN CNA FS+M LS H H
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHR 141
Score = 30.9 bits (69), Expect = 2.3
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 713 KVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNY 751
+ C C+ F+ +S L H R H +
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATP 151
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 34.0 bits (77), Expect = 0.008
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVNLH 273
+G+RPF C+ C AF K + H+ +H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 26.6 bits (58), Expect = 3.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTD 170
+P+ C+ C +AF K++ H +HTD
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 26.3 bits (57), Expect = 4.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ ++PF C +C F K + HL++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 26.3 bits (57), Expect = 4.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTD 304
+ F C +C + + K N +H ++HTD
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTD 32
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.5 bits (81), Expect = 0.010
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 235 SNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNL---HLGKTKSFNCNVCNYSSSL 291
+ H + + E ++CKYC + + + HV+ ++ S+ C CN+ +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 292 KWNLIQH-YRIHTDEKPFNCSL 312
L +H + H E+ F ++
Sbjct: 63 YDALSEHNLKYHPGEENFKLTM 84
Score = 33.6 bits (76), Expect = 0.054
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 132 HFKAHLRIHLNIKPYACKYCGNAFAHKSSRDAH-QNIHTDLK---PYLCLTCGQSFRTFN 187
H + + Y CKYC + H + H ++ Y+C+ C + ++
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 188 LMKRHNLCDHQDVRNYLCN 206
+ HNL H N+
Sbjct: 65 ALSEHNLKYHPGEENFKLT 83
Score = 32.1 bits (72), Expect = 0.15
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 618 HERIHDNHKPYKCTKCNYSARVLSNKLAHERIYH----QDHVFKCHINNCIFSTKFYSCL 673
+++ Y+C C + L+ H H + + C C F TK Y L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVC--VECNFLTKRYDAL 66
Query: 674 RRHRKIFHSNES 685
H +H E
Sbjct: 67 SEHNLKYHPGEE 78
Score = 32.1 bits (72), Expect = 0.19
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 159 SSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRHNLCDHQDVR---NYLCNFCNKTYKDR 215
+Q Y C C N+ H +H +V +Y+C CN K
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 216 KTLDNHILGH 225
L H L +
Sbjct: 64 DALSEHNLKY 73
Score = 30.9 bits (69), Expect = 0.44
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 368 CWKCGFKTSVLNELKAHIKSHH--FPKQPS-ICAVCGDTFKTNYNYFVH-MRRHTGFKPY 423
C C F+T LN H+ S H S +C C K H ++ H G + +
Sbjct: 21 CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENF 80
Query: 424 QCK 426
+
Sbjct: 81 KLT 83
Score = 30.5 bits (68), Expect = 0.57
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 734 RHRRIKHSQHEGKYVCNYCGKSYIDKRDYTNHV-SVHMERKSGYTQRCHKCNATFRIKKF 792
H ++ + EG Y C YC D +T HV S H + C +CN +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 793 LTRHMKTH 800
L+ H +
Sbjct: 66 LSEHNLKY 73
Score = 30.5 bits (68), Expect = 0.61
Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Query: 1 MDHHQHEEQCMPHESQDERTYHCPLCSKQFSKLTTLKRHVG---IHMKTQPV-RCGYCGQ 56
M HH H + E Y C C+ Q L HV ++ C C
Sbjct: 1 MAHHHHHHN--QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNF 58
Query: 57 FFLDLGRLNAHIRQRHTSNKKIYYKCDKCN 86
L+ H + H + K N
Sbjct: 59 LTKRYDALSEHNLKYHPGEENFKLTMVKRN 88
Score = 28.6 bits (63), Expect = 2.9
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 585 TNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNH-ERIHDNHK---PYKCTKCNYSARVL 640
+ + + + + + C C L+ H + H N Y C +CN+ +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 641 SNKLAHERIYH 651
H YH
Sbjct: 64 DALSEHNLKYH 74
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 32.6 bits (73), Expect = 0.030
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 245 HTGERPFQCKYCNYAFKEKHHLETHVNLHLG 275
+GE+P+ C C FK K + HV H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.0 bits (69), Expect = 0.12
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
+ EKP++C +C +F++K + H+R
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRS 32
Score = 29.9 bits (66), Expect = 0.30
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 15 SQDERTYHCPLCSKQFSKLTTLKRHVGIH 43
S E+ Y CP+C +F + + HV H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 26.4 bits (57), Expect = 5.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 594 HGKDRPFSCLLCNNTFAQLSTLLNHERIHD 623
++P+SC +C F + + H R HD
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 33.7 bits (76), Expect = 0.038
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 7 EEQCMPHESQDERTYHCPLCSKQFSK-LTTLKRHVGIHMKTQPVRCGYCGQFFLDLGRLN 65
E+ E D+ + CP C K + LK+H+ + + C +CG+ L +
Sbjct: 21 LEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMK 79
Query: 66 AHIRQRHTS 74
H+ H S
Sbjct: 80 YHVMANHNS 88
Score = 29.5 bits (65), Expect = 1.3
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 266 LETHVNLHLGKTKSFNCNVCN-YSSSLKWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVK 324
LE L + S +C C L +H E F C C KQ R +K
Sbjct: 21 LEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMK 79
Query: 325 NHLRIIHN 332
H+ HN
Sbjct: 80 YHVMANHN 87
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.8 bits (76), Expect = 0.045
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 276 KTKSFNCNVCN-YSSSLKWNLIQHYRI-HTDEKPFNCSLCEKQFRQKIHVKNHLRIIHN 332
+ C CN + L +H + + C C KQF+ K + H H+
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 32.6 bits (73), Expect = 0.12
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 8 EQCMPHESQDERTYHCPLCSKQFSK-LTTLKRHVGI-HMKTQPVRCGYCGQFFLDLGRLN 65
E+ + CP C+ K L LK+H+ + ++C +C + F LN
Sbjct: 12 EEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN 71
Query: 66 AHIRQRHTSNKKIYYKCD 83
H H++ +
Sbjct: 72 YHTMAEHSAKPSDAEASE 89
Score = 31.8 bits (71), Expect = 0.19
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 152 GNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFR-TFNLMKRHNLCDHQDVRNYLCNFCNK 210
+ + Q + +C TC R T +K+H + C C K
Sbjct: 3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRK 62
Query: 211 TYKDRKTLDNHILGHVDIKP 230
+K + L+ H + KP
Sbjct: 63 QFKSKAGLNYHTMAEHSAKP 82
Score = 30.7 bits (68), Expect = 0.49
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 231 YKQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHV 270
K L L+ H+ + + +C++C FK K L H
Sbjct: 35 RKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
Score = 27.6 bits (60), Expect = 6.2
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 421 KPYQCKTCNASYASMRV--LQHHEITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
C TCN V +H E+ C +C K F + H +
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Query: 479 PVCE 482
E
Sbjct: 83 SDAE 86
Score = 27.2 bits (59), Expect = 8.4
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 5 QHEEQCMPHESQDERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPV 49
+H E C + + C C KQF L H +P
Sbjct: 43 KHMEVC----QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Score = 26.8 bits (58), Expect = 9.7
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 361 SNNSYLLCWKCG-FKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTG 419
+C C L LK H++ + C C FK+ H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 420 FKP 422
KP
Sbjct: 80 AKP 82
Score = 26.8 bits (58), Expect = 9.7
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 480 VCEICSQTMAHNQV-LQRHM-TLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQK 534
VC C+ V L++HM Q+ C C F S L+ H + H +
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 34.6 bits (79), Expect = 0.14
Identities = 37/250 (14%), Positives = 77/250 (30%), Gaps = 27/250 (10%)
Query: 380 ELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPYQCKTCNASYASMRVLQ 439
E+K H + F KQP+ C+ C D F+ G +QC+ C+
Sbjct: 34 EVKNHKFTARFFKQPTFCSHCTD--------FIWGFGKQG---FQCQVCSFVV------- 75
Query: 440 HHEITHSKTLKFPCINCGKYFTKLEYMIKHM-KRHFNTNKPVCEICSQTM--AHNQVLQR 496
H+ H F C K + KH K H ++ C+ C + +Q ++
Sbjct: 76 -HKRCHEFVT-FSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKC 133
Query: 497 H---MTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQKQRFMCHRCGIINLK-RKYH 552
M +H + + C + Q + + ++ +
Sbjct: 134 DTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLS 193
Query: 553 VYHLKYECGYTRTLPPELRRQFKHDIVYMDSKTNFNIHMRIHGKDRPFSCLLCNNTFAQL 612
++K + + + + + + F ++ KDR S + +
Sbjct: 194 DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 253
Query: 613 STLLNHERIH 622
+ +
Sbjct: 254 NDFMGSLSFG 263
Score = 28.8 bits (64), Expect = 8.2
Identities = 37/301 (12%), Positives = 71/301 (23%), Gaps = 44/301 (14%)
Query: 232 KQLSNLQSHIRISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFNCNVCNYSSSL 291
K + +++H + ++P C +C GK + F C VC++
Sbjct: 30 KNVHEVKNHKFTARFFKQPTFCSHCTDFIW-----------GFGK-QGFQCQVCSFVV-- 75
Query: 292 KWNLIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNM---NFCDHCFKFV-GPEQ 347
H R H + F+C +K H IH FCDHC + G
Sbjct: 76 ------HKRCH-EFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIH 128
Query: 348 ELNIFRHCEVCDKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTN 407
+ C + + CG +
Sbjct: 129 QGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDREVL-------------- 174
Query: 408 YNYFVHMRRHTGFKPYQCKTCNASYASMRVLQHHEITHSKTLKFPCINCGKYFTKLEYMI 467
+ S +++ + K I E
Sbjct: 175 -----IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFR 229
Query: 468 KHMKRHFNTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQI 527
+K + EI + ++ ++ + S + +
Sbjct: 230 FQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNV 289
Query: 528 R 528
Sbjct: 290 P 290
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 34.7 bits (80), Expect = 0.16
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 19/73 (26%)
Query: 683 NESYAPAKCKICNQSFALFSNLNAHYNKHLK-VRRFSCTNCSLNFTYLSNLIRHRRIKHS 741
+E++ A+CK C+ +A +N ++ H + +CT+C H
Sbjct: 28 SETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSC-----------------HK 70
Query: 742 QHE-GKYVCNYCG 753
HE K+ CN C
Sbjct: 71 GHEEPKFYCNECH 83
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.19
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
K + C C+Y+S++K NL H R HT EK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.0 bits (64), Expect = 0.42
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGK 276
S + +P++C C+YA K +L H+ H G+
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 26.3 bits (57), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
KPY C C A A K++ + H HT K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.6 bits (67), Expect = 0.26
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 249 RPFQCKYCNYAFKEKHHLETHVNLHLG 275
R F C+ C AF + HL+ H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 28.8 bits (65), Expect = 0.42
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 19 RTYHCPLCSKQFSKLTTLKRHVGIHMK 45
R++ C +C++ F++ LKRH H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.9 bits (60), Expect = 2.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
R F C +C FA+ L H R H N K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.5 bits (59), Expect = 3.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 306 KPFNCSLCEKQFRQKIHVKNHLR 328
+ F C +C + F ++ H+K H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 33.5 bits (77), Expect = 0.30
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 23/110 (20%)
Query: 671 SCLRRHRKIFHSNESYAPAKCKICNQSFALFSNLNA--HYNKHLK--VRRFSCTNCSLNF 726
SC ++ + + +Y +C C+ + A + HYN H +CT+C
Sbjct: 16 SCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSC---- 71
Query: 727 TYLSNLIRHRRIKHSQHE-GKYVCNYCGKSYIDKRDYTNHVSVHMERKSG 775
HS HE C+ C S+ Y +
Sbjct: 72 -------------HSAHEKSMVYCDSC-HSFDFNMPYAKKWLRDEPTIAE 107
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 29.0 bits (64), Expect = 0.46
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
+KPY C +C FA + H IHT K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.8 bits (61), Expect = 1.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
+P+ C+ C FA L H RIH K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.0 bits (59), Expect = 2.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 249 RPFQCKYCNYAFKEKHHLETHVNLHLGK 276
+P+ C +C F + L+ HV +H G+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (62), Expect = 1.1
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 774 SGYTQR---CHKCNATFRIKKFLTRHMKTHLIQ 803
SG+T++ C KC ATF ++K L +H KTH +
Sbjct: 6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 243 ISHTGERPFQCKYCNYAFKEKHHLETHVNLHLGK 276
S + + F C+YCN FK KH L+ H+ +H +
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 25.6 bits (55), Expect = 7.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
K F C CN K +L H RIHT+EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLH 273
S + +PF+C C YA + K +L+ H+N H
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH 32
Score = 25.6 bits (55), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 278 KSFNCNVCNYSSSLKWNLIQHYRIHTDEK 306
K F C++C Y++ K NL H H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and
peptides, structural genomics; 1.90A {Thermus
thermophilus}
Length = 192
Score = 31.0 bits (69), Expect = 1.2
Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 3/119 (2%)
Query: 418 TGFKPYQCKTCNASYASMRVLQHHEITHS-KTLKFPCI--NCGKYFTKLEYMIKHMKRHF 474
TGF+P+ N S A + +L + P G+ L H
Sbjct: 5 TGFEPFGSLEHNPSQALLDLLPSEVDGKPLRKAVLPVDAEALGEALEDLHREGPKAVLHL 64
Query: 475 NTNKPVCEICSQTMAHNQVLQRHMTLHFTQNKHPCNRCNASFSSMVQLSCHQIRAHGKQ 533
+ + + +A N + + + + + A ++
Sbjct: 65 GLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIVPGGPLALPARFPVKPVLARWRE 123
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown
function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Length = 205
Score = 30.7 bits (70), Expect = 1.2
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 464 EYMIKHMKRHFNTNKPVCEIC---SQTMAHNQVLQ-RHMTLH 501
+++ +K+ + + V IC + + + + +MT
Sbjct: 86 TLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGF 127
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X*
1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X*
1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X*
1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Length = 92
Score = 29.3 bits (66), Expect = 1.3
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 760 RDYTNHVSVHMERKSGYTQRCHKCNATFRIKKFLTRHMKT 799
R T + + R +R K A I++ L +H
Sbjct: 9 RVVT--IPLRDARAEPNHKRADK--AMILIREHLAKHFSV 44
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 30.4 bits (68), Expect = 1.9
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 286 NYSSSLKWN-LIQHYRIHTDEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVG 344
++S S+K+ +QH+++ D +F + ++ H +
Sbjct: 94 DFSLSVKFGNDVQHFKVLRDGAGKYFL-WVVKFNSLNELVDY----HRSTSVSRNQQIFL 148
Query: 345 PEQELNIFRHCEVCD----KSNNSYLLCWKCGFKTSVLN 379
+ E + V L ++ G V++
Sbjct: 149 RDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMD 187
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.6 bits (68), Expect = 2.0
Identities = 6/62 (9%), Positives = 20/62 (32%)
Query: 47 QPVRCGYCGQFFLDLGRLNAHIRQRHTSNKKIYYKCDKCNKTYKSKYKFERHKNTHVTEN 106
+ +R Y + L ++ R+ + + + +K + + + V
Sbjct: 176 EWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Query: 107 SE 108
+
Sbjct: 236 GK 237
Score = 30.2 bits (67), Expect = 2.6
Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 8/118 (6%)
Query: 83 DKCNKTYKSKYKFERHKNTHVTENSEYPCIYCRNIYPCSFC------AYRGRYRYHFKAH 136
DK + + ++ + + E + R + A++ R +F+A
Sbjct: 110 DKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRAC 169
Query: 137 LRIHLN--IKPYACKYCGNAFAHKSSRDAHQNIHTDLKPYLCLTCGQSFRTFNLMKRH 192
I ++ + + S H+N+ K Q ++
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 29.4 bits (65), Expect = 4.8
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 751 YCGKSYIDKRDYTNHVSVHMERKSGYTQ-RCHKCNATFRIKKFLTRHMKTHLIQYRCTRC 809
+ + Y+ + + ++H G + + K + L + R
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-----LSVLRQ 235
Query: 810 NK 811
K
Sbjct: 236 GK 237
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 27.0 bits (59), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 393 QPSICAVCGDTFKTNYNYFVHMRRHTGFK 421
+P C +CG F + H+R+HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.3 bits (57), Expect = 3.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 598 RPFSCLLCNNTFAQLSTLLNHERIHDNHK 626
+P C++C F Q S+L+ H R H K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 2.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 145 PYACKYCGNAFAHKSSRDAHQNIHT 169
C+ CG F H S HQ +H
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHA 36
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 2.5
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 17/57 (29%)
Query: 716 RFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCG----KSYIDK----RDYTN 764
+C C Y ++ EG VC CG +D R ++N
Sbjct: 21 VLTCPECK---VYPPKIVE------RFSEGDVVCALCGLVLSDKLVDTRSEWRTFSN 68
Score = 29.2 bits (65), Expect = 4.4
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 11/43 (25%)
Query: 346 EQELNIFRHCEVCDKSN--------NSYLLCWKCGFKTSVLNE 380
LNI C C ++C CG VL++
Sbjct: 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL---VLSD 54
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.2 bits (64), Expect = 2.9
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 686 YAPAKCKICNQSFALFSNLNAHYN--KHL-KVRRFSCTNCSLNFTYLSNLIRHRRIKHSQ 742
++ +CK+C+ S AHY KH KVRR+ N +
Sbjct: 30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDG 89
Query: 743 HEGKYVCNYCGKSYIDKRDYTNH 765
+ C C ++ +H
Sbjct: 90 EDRSKCCPVCNMTFSSPVVAESH 112
Score = 27.6 bits (60), Expect = 7.5
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQN--IHTD-LKPYLCLTCGQSFRTFNLMKRHNLCDHQD 199
CK C +S + AH H + ++ Y+ + G+ K
Sbjct: 30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDG 89
Query: 200 V-RNYLCNFCNKTYKDRKTLDNHILGHVDIKPYKQL 234
R+ C CN T+ ++H +G IK +
Sbjct: 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR 125
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 3.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 244 SHTGERPFQCKYCNYAFKEKHHLETHVNLHLGKTKSFN 281
S + E+ QC+ C F + L H LH+G+ S
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGP 43
Score = 26.7 bits (58), Expect = 4.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 804 YRCTRCNKTFKQNTSFIRHSLKHFNSSNSDN 834
++C C + F Q S I H + H NS
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQKNSGP 43
Score = 26.7 bits (58), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 144 KPYACKYCGNAFAHKSSRDAHQNIHTDLK 172
K + C+ CG F S HQ +H K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 3.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 779 RCHKCNATFRIKKFLTRHMKTH 800
+C+KC TF K+LT+H + H
Sbjct: 14 KCNKCEKTFSCSKYLTQHERIH 35
Score = 25.9 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 594 HGKDRPFSCLLCNNTFAQLSTLLNHERIH 622
K++ F C C TF+ L HERIH
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.6 bits (55), Expect = 10.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 302 HTDEKPFNCSLCEKQFRQKIHVKNHLRI 329
EK F C+ CEK F ++ H RI
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERI 34
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 26.3 bits (57), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 249 RPFQCKYCNYAFKEKHHLETHVNLHLG 275
RP+ C C F KH +ETH +H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.1 bits (54), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 143 IKPYACKYCGNAFAHKSSRDAHQNIHT 169
++PY+C CG F+ K + H +HT
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHT 27
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 28.4 bits (63), Expect = 4.1
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 304 DEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCD----HCFKFVGPEQELNIFRHC 355
+ C C++ F +H ++ H N H +F G + +N R
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLK 67
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 26.0 bits (57), Expect = 4.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHFNTNK 478
KF C C K F + +++ KH+ H +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.3 bits (57), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 201 RNYLCNFCNKTYKDRKTLDNHILGHVD 227
+ +LC+ C K +K + TL +H L H
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.4 bits (57), Expect = 4.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 19 RTYHCPLCSKQFSKLTTLKRHV 40
R+Y CP+C K FS+ +K H+
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHI 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 29.6 bits (65), Expect = 5.3
Identities = 19/185 (10%), Positives = 40/185 (21%), Gaps = 5/185 (2%)
Query: 304 DEKPFNCSLCEKQFRQKIHVKNHLRIIHNMNFCDHCFKFVGPEQELNIFRHCEVCDKSNN 363
+ + F K + N I + + ++ D
Sbjct: 453 ELQRFMNKPEIDVRLVKRRIHNPFAAIISN-LMSETEALMRTIYSVDTLSQNSKKDFGTQ 511
Query: 364 SYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVCGDTFKTNYNYFVHMRRHTGFKPY 423
+Y + L +L+ + + IC + R
Sbjct: 512 NYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYL 571
Query: 424 QCKTCNASYASMRVLQHH----EITHSKTLKFPCINCGKYFTKLEYMIKHMKRHFNTNKP 479
N L+ H L + KLE ++ + + N
Sbjct: 572 TEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631
Query: 480 VCEIC 484
+
Sbjct: 632 TRTLL 636
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.0 bits (57), Expect = 6.2
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 243 ISHTGERPFQCKY--CNYAFKEKHHLETHVNLHLG 275
+ ++ F+C + C FK ++++ +H+ HL
Sbjct: 11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.6 bits (56), Expect = 6.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 450 KFPCINCGKYFTKLEYMIKHMKRHFNT 476
KF C C K F + +++ H+ H N
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
>2czr_A TBP-interacting protein; tata-binding protein (TBP),
hyperthermophilic archaeon, Zn-finger motif,
transcription; 2.30A {Thermococcus kodakarensis} SCOP:
c.52.4.1
Length = 226
Score = 28.8 bits (64), Expect = 6.6
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 62 GRLNAHIRQRHTSNKKI----YYKCDKCNKTYKSKYKFERHKNTH 102
L HI+ + + +YKC++C K Y E H H
Sbjct: 133 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREH 176
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 28.9 bits (65), Expect = 6.6
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 774 SGYTQRCHKCNATFRIKKFLTRHMKTHLIQYRCTRCNKTFKQNTSFIRHSL 824
+ + C C F + M + RC C K + F L
Sbjct: 136 TFASATCTVCQRPFPGEDIRADVMADRV--PRCPVCTGVVKPDIVFFGEPL 184
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 29.0 bits (64), Expect = 7.1
Identities = 13/95 (13%), Positives = 22/95 (23%), Gaps = 32/95 (33%)
Query: 354 HCEVC-------------DKSNNSYLLCWKCGFKTSVLNELKAHIKSHHFPKQPSICAVC 400
C C ++ YL C C H+ + C+ C
Sbjct: 184 LCPACGSPPMAGMIRQGGKETGLRYLSCSLCAC-------------EWHYVR--IKCSHC 228
Query: 401 GDTFKTNYNYFV---HMRRHTGFKPYQCKTCNASY 432
++ Y + C +C Y
Sbjct: 229 EESKHLAYLSLEHDGQPAEKAVLRAETCPSCQ-GY 262
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 26.4 bits (58), Expect = 7.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 17 DERTYHCPLCSKQFSKLTTLKRHVGIHMKTQPVRCGYCGQ 56
+ ++ CP+CS F+ L + T RC +C
Sbjct: 11 NRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHT 47
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.3 bits (60), Expect = 9.5
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 203 YLCNFCNKTYKDRKTLDNHILGHVDIKPYKQLS 235
+ C C + + D L H K KQLS
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS 83
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 28.5 bits (61), Expect = 9.8
Identities = 35/269 (13%), Positives = 71/269 (26%), Gaps = 18/269 (6%)
Query: 522 LSCHQIRAHGKQKQRFMCHRCGIINLKRKYHVYHLKYECGYTRTLPPELRRQFKHDIVYM 581
+CH C RC + + + E ++ + + +
Sbjct: 59 GACHTGMKAFSVADDSQCVRCHSGSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTC-HS 117
Query: 582 DSKTNFNIHMRIHGKDRPFSCLLCNNTFAQLSTLLNHERIHDNHKPYKCTKCNYSARVLS 641
+ + ++ + ++ SC C+N + N + H P K
Sbjct: 118 NREITGGRNVTMAQMEKGKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGV-AD 176
Query: 642 NKLAHERIYHQDHVFKCHINNCIFSTKFYSCLRRHRKIFHSNESYAPAKCKICNQSFALF 701
+HE +CH + + K F + C C+ F
Sbjct: 177 AAFSHEFHLGMYKCNECHTKLFAY--------KAGAKRFTMADMDKGKSCGACHNGKDAF 228
Query: 702 SNLNAHYNKHLKVRRFSCTNCSLNFTYLSNLIRHRRIKHSQHEGKYVCNYCGKSYIDKRD 761
S+ + H ++ T + + H H + C C R
Sbjct: 229 SSASDCGKCHPGLKPAKLTYKTSVGEAYFD--------HDIHLSMFKCADCHTKVFKYRK 280
Query: 762 YTNHVSVHMERKSGYTQRCHKCNATFRIK 790
+ ++ K CH F +
Sbjct: 281 GSAPATMADMEKGKSCGVCHNGKDAFSVA 309
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.136 0.458
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,488,090
Number of extensions: 722650
Number of successful extensions: 8323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6587
Number of HSP's successfully gapped: 2650
Length of query: 836
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 734
Effective length of database: 3,853,851
Effective search space: 2828726634
Effective search space used: 2828726634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (27.9 bits)