Query psy656
Match_columns 427
No_of_seqs 269 out of 1296
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:14:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0902|consensus 100.0 2E-113 4E-118 937.7 36.4 399 6-427 1405-1803(1803)
2 cd05167 PI4Kc_III_alpha Phosph 100.0 2.3E-97 5E-102 737.1 34.3 310 94-426 1-311 (311)
3 cd00895 PI3Kc_C2_beta Phosphoi 100.0 7E-93 1.5E-97 712.7 36.7 339 47-423 1-354 (354)
4 cd05177 PI3Kc_C2_gamma Phospho 100.0 1.3E-89 2.7E-94 691.2 35.7 338 47-423 1-354 (354)
5 cd05176 PI3Kc_C2_alpha Phospho 100.0 5.5E-89 1.2E-93 684.3 35.5 339 47-423 1-353 (353)
6 cd00891 PI3Kc Phosphoinositide 100.0 1.4E-88 3E-93 686.3 36.3 339 47-423 1-352 (352)
7 cd00894 PI3Kc_IB_gamma Phospho 100.0 2.4E-88 5.1E-93 683.1 34.9 340 48-421 2-362 (365)
8 cd00896 PI3Kc_III Phosphoinosi 100.0 1.8E-87 3.9E-92 677.3 35.6 336 48-423 2-348 (350)
9 cd05166 PI3Kc_II Phosphoinosit 100.0 4.3E-87 9.4E-92 674.7 36.9 338 48-423 2-353 (353)
10 cd00893 PI4Kc_III Phosphoinosi 100.0 6.2E-88 1.4E-92 664.5 29.4 287 105-426 2-289 (289)
11 cd05175 PI3Kc_IA_alpha Phospho 100.0 5.2E-87 1.1E-91 671.3 34.0 339 48-421 2-364 (366)
12 cd05165 PI3Kc_I Phosphoinositi 100.0 1.1E-86 2.4E-91 672.4 34.4 339 48-420 2-363 (366)
13 cd05173 PI3Kc_IA_beta Phosphoi 100.0 3E-86 6.5E-91 668.4 35.1 337 48-422 2-360 (362)
14 cd05174 PI3Kc_IA_delta Phospho 100.0 1.1E-85 2.3E-90 662.9 34.0 337 48-422 2-360 (361)
15 cd05168 PI4Kc_III_beta Phospho 100.0 3.9E-80 8.5E-85 610.2 29.3 253 170-425 33-292 (293)
16 KOG0906|consensus 100.0 9.6E-76 2.1E-80 606.5 29.0 355 27-423 470-840 (843)
17 KOG0904|consensus 100.0 3.9E-76 8.5E-81 624.1 23.1 356 23-416 691-1070(1076)
18 KOG0905|consensus 100.0 1.6E-75 3.6E-80 630.2 27.3 363 23-424 970-1348(1639)
19 KOG0903|consensus 100.0 1.2E-72 2.5E-77 592.5 26.7 258 166-425 582-846 (847)
20 cd00892 PIKKc_ATR ATR (Ataxia 100.0 1.8E-57 4E-62 438.1 24.3 225 109-375 6-236 (237)
21 cd05172 PIKKc_DNA-PK DNA-depen 100.0 1.7E-57 3.7E-62 437.8 23.9 222 110-375 7-234 (235)
22 cd00142 PI3Kc_like Phosphoinos 100.0 1.9E-56 4.1E-61 426.3 24.0 215 106-369 3-219 (219)
23 smart00146 PI3Kc Phosphoinosit 100.0 1.9E-56 4.2E-61 421.3 21.0 194 171-376 1-199 (202)
24 COG5032 TEL1 Phosphatidylinosi 100.0 7.4E-56 1.6E-60 525.0 27.6 288 97-427 1761-2101(2105)
25 cd05169 PIKKc_TOR TOR (Target 100.0 1E-55 2.2E-60 435.7 22.9 202 169-375 29-279 (280)
26 cd05164 PIKKc Phosphoinositide 100.0 5.5E-55 1.2E-59 417.2 23.8 211 110-369 7-222 (222)
27 cd05171 PIKKc_ATM Ataxia telan 100.0 1.1E-54 2.5E-59 428.0 23.4 202 169-375 29-278 (279)
28 cd05170 PIKKc_SMG1 Suppressor 100.0 9.7E-52 2.1E-56 412.2 23.9 204 169-375 29-306 (307)
29 PF00454 PI3_PI4_kinase: Phosp 100.0 5.6E-51 1.2E-55 390.3 19.5 204 170-376 2-235 (235)
30 KOG0890|consensus 100.0 1.2E-46 2.5E-51 430.6 29.4 245 169-418 2071-2378(2382)
31 cd05163 TRRAP TRansformation/t 100.0 1.2E-45 2.6E-50 359.2 23.4 202 169-375 30-252 (253)
32 PTZ00303 phosphatidylinositol 100.0 2E-43 4.2E-48 370.0 27.8 308 86-408 931-1325(1374)
33 KOG0892|consensus 100.0 2.4E-42 5.2E-47 397.2 24.1 206 170-380 2472-2727(2806)
34 KOG0891|consensus 99.9 5.3E-27 1.2E-31 275.9 6.7 205 169-376 1987-2237(2341)
35 KOG0889|consensus 98.9 3.8E-09 8.2E-14 127.4 11.6 168 171-340 3227-3449(3550)
36 PF13575 DUF4135: Domain of un 93.9 0.5 1.1E-05 48.7 11.0 227 171-427 72-365 (370)
37 TIGR03843 conserved hypothetic 89.3 0.32 6.9E-06 47.5 3.1 110 199-310 63-177 (253)
38 COG0661 AarF Predicted unusual 84.5 0.63 1.4E-05 50.4 2.4 86 202-305 224-313 (517)
39 cd04792 LanM-like LanM-like pr 82.5 6.6 0.00014 44.7 9.7 106 170-308 114-219 (825)
40 KOG0616|consensus 75.8 1.9 4E-05 43.7 2.3 25 281-305 168-192 (355)
41 PRK04750 ubiB putative ubiquin 75.6 1.6 3.5E-05 47.5 2.0 25 281-305 284-312 (537)
42 KOG0608|consensus 75.3 2.7 5.9E-05 46.5 3.5 39 267-305 739-777 (1034)
43 TIGR01982 UbiB 2-polyprenylphe 70.8 3.2 6.9E-05 43.9 2.8 25 281-305 281-305 (437)
44 TIGR03724 arch_bud32 Kae1-asso 70.6 7.3 0.00016 35.4 4.8 28 276-304 107-136 (199)
45 cd05151 ChoK Choline Kinase (C 69.3 3.9 8.5E-05 35.9 2.6 27 278-305 109-135 (170)
46 cd05145 RIO1_like RIO kinase f 66.9 4 8.7E-05 37.5 2.3 24 281-305 142-165 (190)
47 PRK10359 lipopolysaccharide co 66.5 3.8 8.2E-05 39.9 2.1 23 281-304 159-181 (232)
48 PF06293 Kdo: Lipopolysacchari 65.0 21 0.00045 33.4 6.8 70 220-305 95-169 (206)
49 PRK14879 serine/threonine prot 63.0 16 0.00034 33.5 5.5 24 281-305 119-142 (211)
50 cd05147 RIO1_euk RIO kinase fa 62.4 4.7 0.0001 37.4 1.8 26 279-305 138-165 (190)
51 cd05042 PTKc_Aatyk Catalytic d 58.5 22 0.00048 33.5 5.8 26 281-306 124-149 (269)
52 KOG0612|consensus 58.3 16 0.00034 43.2 5.3 52 281-332 199-254 (1317)
53 cd05144 RIO2_C RIO kinase fami 57.1 10 0.00023 34.7 3.2 27 281-307 149-175 (198)
54 KOG0598|consensus 51.7 7.7 0.00017 40.0 1.4 34 272-305 136-173 (357)
55 cd05122 PKc_STE Catalytic doma 51.5 27 0.00059 31.8 5.0 52 278-329 119-172 (253)
56 cd05156 ChoK_euk Choline Kinas 51.3 12 0.00026 36.8 2.7 34 274-307 177-214 (302)
57 cd05153 HomoserineK_II Homoser 50.1 34 0.00074 33.3 5.7 30 276-305 175-204 (296)
58 PF06702 DUF1193: Protein of u 49.7 54 0.0012 31.8 6.7 104 266-386 90-198 (221)
59 cd05119 RIO RIO kinase family, 49.4 12 0.00027 33.4 2.3 26 280-306 138-163 (187)
60 TIGR02172 Fb_sc_TIGR02172 Fibr 48.2 13 0.00029 35.5 2.4 24 280-304 157-180 (226)
61 PRK12274 serine/threonine prot 47.4 16 0.00034 35.4 2.7 30 276-305 108-140 (218)
62 PRK01723 3-deoxy-D-manno-octul 47.2 15 0.00033 35.3 2.7 25 281-305 166-190 (239)
63 PF01636 APH: Phosphotransfera 47.0 12 0.00026 34.1 1.9 32 274-305 164-196 (239)
64 cd05580 STKc_PKA Catalytic dom 46.6 35 0.00077 32.7 5.2 28 280-307 124-151 (290)
65 PRK05231 homoserine kinase; Pr 44.6 56 0.0012 32.2 6.3 28 278-305 189-216 (319)
66 cd08217 STKc_Nek2 Catalytic do 44.1 1E+02 0.0022 28.4 7.7 28 280-307 133-160 (265)
67 PRK10271 thiK thiamine kinase; 43.4 27 0.00059 32.9 3.6 53 255-309 57-109 (188)
68 TIGR00938 thrB_alt homoserine 42.3 72 0.0016 31.5 6.7 29 276-304 187-215 (307)
69 KOG0610|consensus 42.3 58 0.0013 34.6 6.1 93 196-305 130-227 (459)
70 PF06176 WaaY: Lipopolysacchar 42.2 21 0.00045 34.8 2.7 24 280-304 158-181 (229)
71 KOG0603|consensus 41.8 17 0.00038 40.0 2.3 28 280-307 438-466 (612)
72 PTZ00426 cAMP-dependent protei 41.5 31 0.00068 34.6 4.0 25 281-305 155-179 (340)
73 cd05154 ACAD10_11_like Acyl-Co 41.3 21 0.00046 32.4 2.5 31 275-305 173-205 (223)
74 PRK10345 hypothetical protein; 40.9 60 0.0013 30.8 5.6 88 203-301 61-153 (210)
75 PF07804 HipA_C: HipA-like C-t 39.3 27 0.00058 27.7 2.5 30 263-292 38-67 (79)
76 cd06613 STKc_MAP4K3_like Catal 38.1 75 0.0016 29.4 5.8 26 280-305 124-149 (262)
77 PF10707 YrbL-PhoP_reg: PhoP r 37.0 1.1E+02 0.0023 29.0 6.6 81 207-301 81-166 (199)
78 cd05120 APH_ChoK_like Aminogly 36.7 32 0.00069 28.4 2.8 25 281-305 113-137 (155)
79 cd05581 STKc_PDK1 Catalytic do 36.7 17 0.00038 34.1 1.2 27 280-306 125-151 (280)
80 cd08529 STKc_FA2-like Catalyti 36.7 1.5E+02 0.0033 27.2 7.6 26 281-306 125-150 (256)
81 cd05155 APH_ChoK_like_1 Unchar 36.6 28 0.00061 32.9 2.7 30 275-304 163-192 (235)
82 cd05612 STKc_PRKX_like Catalyt 36.1 55 0.0012 31.6 4.7 25 281-305 125-149 (291)
83 cd05590 STKc_nPKC_eta Catalyti 35.9 55 0.0012 32.2 4.7 25 281-305 120-144 (320)
84 cd05627 STKc_NDR2 Catalytic do 35.5 21 0.00046 35.8 1.7 25 281-305 125-149 (360)
85 cd08228 STKc_Nek6 Catalytic do 35.4 1.5E+02 0.0033 27.6 7.5 25 281-305 130-154 (267)
86 smart00090 RIO RIO-like kinase 34.9 26 0.00057 33.7 2.2 24 281-305 173-196 (237)
87 cd05587 STKc_cPKC Catalytic do 34.4 22 0.00049 35.0 1.6 24 281-304 125-148 (324)
88 KOG0694|consensus 33.6 27 0.00059 38.9 2.2 135 173-331 400-542 (694)
89 PRK11768 serine/threonine prot 33.5 87 0.0019 31.5 5.7 69 274-358 194-262 (325)
90 KOG0690|consensus 33.0 22 0.00047 36.8 1.3 48 257-305 265-316 (516)
91 KOG0696|consensus 33.0 28 0.0006 37.1 2.1 25 281-305 474-498 (683)
92 PTZ00263 protein kinase A cata 32.3 55 0.0012 32.4 4.0 27 280-306 141-167 (329)
93 PHA00451 protein kinase 32.3 64 0.0014 32.5 4.3 42 257-300 169-212 (362)
94 KOG0592|consensus 31.8 30 0.00065 37.8 2.1 27 282-308 199-227 (604)
95 cd05157 ETNK_euk Ethanolamine 31.7 40 0.00088 31.5 2.9 35 275-309 169-204 (235)
96 KOG1235|consensus 31.6 35 0.00075 37.4 2.6 28 281-308 325-356 (538)
97 cd06656 STKc_PAK3 Catalytic do 31.5 57 0.0012 31.5 4.0 47 281-327 139-188 (297)
98 cd07874 STKc_JNK3 Catalytic do 31.4 82 0.0018 31.3 5.2 26 281-306 143-168 (355)
99 PF00069 Pkinase: Protein kina 31.1 28 0.0006 32.3 1.6 26 280-305 121-146 (260)
100 cd05087 PTKc_Aatyk1_Aatyk3 Cat 30.5 1.2E+02 0.0026 28.5 5.9 25 281-305 124-148 (269)
101 KOG0984|consensus 30.5 36 0.00079 33.2 2.2 45 281-325 173-224 (282)
102 cd06638 STKc_myosinIIIA Cataly 30.4 84 0.0018 29.7 4.9 26 281-306 148-173 (286)
103 cd05609 STKc_MAST Catalytic do 30.1 33 0.00071 33.3 2.0 25 280-304 124-148 (305)
104 cd05598 STKc_LATS Catalytic do 30.0 30 0.00065 34.9 1.7 24 281-304 125-148 (376)
105 cd06640 STKc_MST4 Catalytic do 29.8 33 0.00071 32.6 1.9 26 280-305 124-149 (277)
106 PF03701 UPF0181: Uncharacteri 29.3 1.3E+02 0.0028 22.5 4.4 40 369-408 3-46 (51)
107 PF01633 Choline_kinase: Choli 29.2 36 0.00078 31.6 2.0 29 276-304 143-172 (211)
108 cd05059 PTKc_Tec_like Catalyti 29.1 89 0.0019 29.1 4.7 25 281-305 124-148 (256)
109 cd05616 STKc_cPKC_beta Catalyt 29.0 29 0.00062 34.2 1.4 25 281-305 125-149 (323)
110 cd05578 STKc_Yank1 Catalytic d 28.8 95 0.0021 28.8 4.9 49 280-328 123-173 (258)
111 PHA03210 serine/threonine kina 28.7 93 0.002 33.2 5.3 24 281-304 291-314 (501)
112 cd06657 STKc_PAK4 Catalytic do 28.7 80 0.0017 30.5 4.5 26 280-305 139-164 (292)
113 cd07862 STKc_CDK6 Catalytic do 28.5 99 0.0022 29.4 5.0 25 281-305 134-158 (290)
114 TIGR02906 spore_CotS spore coa 28.3 44 0.00096 32.6 2.5 28 276-304 187-214 (313)
115 cd05626 STKc_LATS2 Catalytic d 28.1 87 0.0019 31.7 4.8 24 281-304 125-148 (381)
116 cd05615 STKc_cPKC_alpha Cataly 28.0 98 0.0021 30.5 5.0 25 281-305 125-149 (323)
117 cd05082 PTKc_Csk Catalytic dom 27.9 1.1E+02 0.0023 28.5 5.0 25 281-305 126-150 (256)
118 cd05088 PTKc_Tie2 Catalytic do 27.7 5.5E+02 0.012 24.6 17.7 25 281-305 148-172 (303)
119 cd05575 STKc_SGK Catalytic dom 27.1 35 0.00075 33.6 1.6 25 281-305 120-144 (323)
120 cd05625 STKc_LATS1 Catalytic d 27.1 96 0.0021 31.3 4.9 24 281-304 125-148 (382)
121 KOG3087|consensus 26.9 4E+02 0.0086 25.8 8.4 87 205-307 71-166 (229)
122 COG3835 CdaR Sugar diacid util 26.7 30 0.00066 35.7 1.1 69 280-352 41-112 (376)
123 cd05585 STKc_YPK1_like Catalyt 26.7 38 0.00083 33.1 1.8 24 281-304 117-140 (312)
124 cd05033 PTKc_EphR Catalytic do 26.4 42 0.00092 31.5 2.0 26 281-306 130-155 (266)
125 cd05614 STKc_MSK2_N N-terminal 26.4 37 0.0008 33.4 1.6 24 281-304 129-152 (332)
126 cd05594 STKc_PKB_alpha Catalyt 26.3 50 0.0011 32.4 2.6 24 281-304 120-143 (325)
127 cd05592 STKc_nPKC_theta_delta 26.1 35 0.00077 33.5 1.4 24 281-304 120-143 (316)
128 cd05600 STKc_Sid2p_Dbf2p Catal 26.0 73 0.0016 31.4 3.7 25 281-305 125-149 (333)
129 PF01163 RIO1: RIO1 family; I 26.0 57 0.0012 30.5 2.7 83 207-307 71-156 (188)
130 PLN00034 mitogen-activated pro 25.7 34 0.00074 34.1 1.3 25 281-305 192-216 (353)
131 cd05116 PTKc_Syk Catalytic dom 25.6 1.1E+02 0.0024 28.5 4.7 25 281-305 119-143 (257)
132 cd05604 STKc_SGK3 Catalytic do 25.4 40 0.00087 33.2 1.7 25 281-305 120-144 (325)
133 KOG2464|consensus 25.2 48 0.001 32.2 2.1 19 276-294 157-175 (246)
134 cd05100 PTKc_FGFR3 Catalytic d 25.1 6.5E+02 0.014 24.5 12.4 25 281-305 158-182 (334)
135 cd06608 STKc_myosinIII_like Ca 25.0 38 0.00083 31.5 1.4 25 281-305 137-161 (275)
136 cd07875 STKc_JNK1 Catalytic do 24.8 1.3E+02 0.0027 30.1 5.2 25 281-305 150-174 (364)
137 PLN02150 terpene synthase/cycl 24.8 79 0.0017 26.4 3.1 26 378-406 9-35 (96)
138 TIGR01767 MTRK 5-methylthiorib 24.8 46 0.001 34.7 2.0 28 278-306 194-221 (370)
139 cd06617 PKc_MKK3_6 Catalytic d 24.7 1.6E+02 0.0034 27.7 5.6 24 281-304 128-151 (283)
140 cd06642 STKc_STK25-YSK1 Cataly 24.7 50 0.0011 31.3 2.1 24 281-304 125-148 (277)
141 cd05588 STKc_aPKC Catalytic do 24.6 1E+02 0.0022 30.4 4.5 25 281-305 120-144 (329)
142 cd05602 STKc_SGK1 Catalytic do 24.5 39 0.00084 33.3 1.4 24 281-304 120-143 (325)
143 cd05152 MPH2' Macrolide 2'-Pho 24.5 57 0.0012 32.2 2.5 29 277-305 186-215 (276)
144 cd05601 STKc_CRIK Catalytic do 24.5 44 0.00094 32.9 1.7 25 281-305 126-150 (330)
145 cd05591 STKc_nPKC_epsilon Cata 24.5 43 0.00093 32.9 1.7 25 281-305 120-144 (321)
146 PF04614 Pex19: Pex19 protein 24.5 1.2E+02 0.0027 29.6 4.9 46 41-86 162-207 (248)
147 KOG3133|consensus 24.3 1.8E+02 0.0038 29.0 5.8 31 38-68 179-209 (267)
148 smart00587 CHK ZnF_C4 abd HLH 24.3 66 0.0014 29.8 2.8 30 277-306 121-155 (196)
149 cd06637 STKc_TNIK Catalytic do 24.2 39 0.00084 31.7 1.3 26 281-306 135-160 (272)
150 cd06635 STKc_TAO1 Catalytic do 24.2 5.3E+02 0.012 24.9 9.4 47 281-328 149-195 (317)
151 TIGR02721 ycfN_thiK thiamine k 24.1 58 0.0013 31.1 2.5 32 277-309 147-178 (256)
152 cd05603 STKc_SGK2 Catalytic do 24.1 40 0.00086 33.1 1.3 25 281-305 120-144 (321)
153 cd05597 STKc_DMPK_like Catalyt 24.0 1.2E+02 0.0027 29.9 4.9 49 281-329 126-178 (331)
154 PLN02421 phosphotransferase, a 23.9 59 0.0013 32.8 2.6 35 276-310 182-217 (330)
155 cd05083 PTKc_Chk Catalytic dom 23.8 1.3E+02 0.0028 27.9 4.8 26 281-306 124-149 (254)
156 cd05150 APH Aminoglycoside 3'- 23.8 63 0.0014 30.4 2.7 29 276-304 163-191 (244)
157 cd05085 PTKc_Fer Catalytic dom 23.8 46 0.001 30.7 1.7 25 281-305 117-141 (250)
158 KOG0593|consensus 23.8 45 0.00098 34.2 1.7 25 281-305 125-149 (396)
159 cd05573 STKc_ROCK_NDR_like Cat 23.6 43 0.00093 33.0 1.5 25 281-305 125-149 (350)
160 cd05039 PTKc_Csk_like Catalyti 23.5 1.5E+02 0.0032 27.5 5.1 27 281-307 126-152 (256)
161 KOG0594|consensus 23.0 55 0.0012 33.5 2.1 26 281-306 144-169 (323)
162 cd05574 STKc_phototropin_like 22.8 53 0.0011 31.8 1.9 29 279-307 125-153 (316)
163 cd05571 STKc_PKB Catalytic dom 22.6 50 0.0011 32.5 1.7 25 281-305 119-143 (323)
164 PF01386 Ribosomal_L25p: Ribos 22.5 63 0.0014 26.4 2.0 9 293-301 80-88 (88)
165 cd05617 STKc_aPKC_zeta Catalyt 22.4 46 0.001 32.9 1.5 25 281-305 120-144 (327)
166 cd05075 PTKc_Axl Catalytic dom 22.2 49 0.0011 31.0 1.5 25 281-305 136-160 (272)
167 cd00180 PKc Catalytic domain o 22.2 3.2E+02 0.007 23.3 6.8 30 278-307 113-143 (215)
168 cd07871 STKc_PCTAIRE3 Catalyti 22.2 44 0.00096 32.1 1.2 25 281-305 127-151 (288)
169 cd05069 PTKc_Yes Catalytic dom 22.0 57 0.0012 30.5 2.0 25 281-305 126-150 (260)
170 COG0510 ycfN Thiamine kinase a 22.0 72 0.0016 31.5 2.7 34 276-309 153-186 (269)
171 cd05034 PTKc_Src_like Catalyti 22.0 57 0.0012 30.3 1.9 27 280-306 126-152 (261)
172 cd05112 PTKc_Itk Catalytic dom 22.0 56 0.0012 30.3 1.9 25 281-305 124-148 (256)
173 PRK05114 hypothetical protein; 21.9 2.1E+02 0.0045 22.0 4.4 41 369-409 3-47 (59)
174 cd07873 STKc_PCTAIRE1 Catalyti 21.9 45 0.00097 32.2 1.2 25 281-305 128-152 (301)
175 PHA03212 serine/threonine kina 21.9 1.6E+02 0.0034 30.3 5.3 24 281-304 206-229 (391)
176 cd06612 STKc_MST1_2 Catalytic 21.8 1.8E+02 0.004 26.7 5.3 29 279-307 121-149 (256)
177 cd05628 STKc_NDR1 Catalytic do 21.7 51 0.0011 33.1 1.6 24 281-304 125-148 (363)
178 KOG0028|consensus 21.7 4.5E+02 0.0096 24.5 7.4 65 337-406 87-151 (172)
179 PRK12396 5-methylribose kinase 21.6 4.4E+02 0.0095 28.0 8.5 27 278-305 229-255 (409)
180 cd05096 PTKc_DDR1 Catalytic do 21.5 1.5E+02 0.0032 28.5 4.8 25 281-305 162-186 (304)
181 cd06606 STKc_MAPKKK Catalytic 21.4 1.3E+02 0.0029 27.2 4.3 30 278-307 122-151 (260)
182 cd07837 STKc_CdkB_plant Cataly 21.4 1.9E+02 0.0042 27.4 5.5 24 281-304 134-158 (295)
183 cd07848 STKc_CDKL5 Catalytic d 21.3 4.2E+02 0.009 25.0 7.8 26 281-306 124-149 (287)
184 PHA02882 putative serine/threo 21.1 62 0.0013 31.3 2.0 24 281-304 150-173 (294)
185 cd07876 STKc_JNK2 Catalytic do 21.0 1.3E+02 0.0029 29.9 4.5 25 281-305 147-171 (359)
186 cd07872 STKc_PCTAIRE2 Catalyti 20.8 51 0.0011 32.0 1.3 25 281-305 128-152 (309)
187 cd05118 STKc_CMGC Catalytic do 20.6 57 0.0012 30.6 1.6 28 280-307 121-148 (283)
188 cd08219 STKc_Nek3 Catalytic do 20.5 1.1E+02 0.0024 28.3 3.6 25 281-305 124-148 (255)
189 cd05621 STKc_ROCK2 Catalytic d 20.5 58 0.0013 33.1 1.8 50 281-330 166-219 (370)
190 cd05102 PTKc_VEGFR3 Catalytic 20.5 73 0.0016 31.3 2.4 25 281-305 198-222 (338)
191 cd05586 STKc_Sck1_like Catalyt 20.4 54 0.0012 32.2 1.5 24 281-304 120-143 (330)
192 cd05619 STKc_nPKC_theta Cataly 20.2 54 0.0012 32.2 1.4 25 281-305 120-144 (316)
No 1
>KOG0902|consensus
Probab=100.00 E-value=1.9e-113 Score=937.72 Aligned_cols=399 Identities=66% Similarity=1.118 Sum_probs=382.7
Q ss_pred cCcccccccccCCCCCCCCcchHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHhc
Q psy656 6 LNSCPALEASNDIDMTEKDPILYDTLDSLVQALVASFSGPAKAFYEREFEFFAQITDISGKIRPFPKGAERKRACLEELS 85 (427)
Q Consensus 6 ~~~~~~~n~~~de~~~~~d~~~~~~l~~~~~~i~~~~~~~~~~~~~~q~~f~~~l~~is~~lk~~~~~~er~~~~~~~l~ 85 (427)
||=++-||+|+||++..+ |.++++|++++++|+++++|++|+||+|||+||+++|+|||+|+|+||++||+++|++||+
T Consensus 1405 liWnm~~n~y~d~~~~~~-~~~~~~l~~~~e~i~~~~s~~a~df~~rEf~ff~~vT~ISg~l~P~~k~~erk~~i~~~l~ 1483 (1803)
T KOG0902|consen 1405 LIWNMKANLYVDEEAIVK-ADIGEILDRVREEITGSLSGPARDFYEREFDFFNKVTSISGKLKPYPKGDERKKAILEELS 1483 (1803)
T ss_pred HHHHhhhhhccccccccc-hhHHHHHHHHHHHHHhcCCchhhHHHHHHhHHHHHhhhccceeecCCCcHHHHHHHHHHHH
Confidence 455678999999999999 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCcccCCCCceeEeeeecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcc
Q psy656 86 KIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKI 165 (427)
Q Consensus 86 ~i~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (427)
+|++++++|||+||+.+|.+|++++|+|||||||+|||++|+|++. +..++... .+.+
T Consensus 1484 kik~~~~~YlPs~P~~~v~~i~~~Sg~plQS~aK~PfmatF~vkr~-----~~~g~~~~-----------------~k~~ 1541 (1803)
T KOG0902|consen 1484 KIKVQPGCYLPSNPDAVVLDIDYKSGTPLQSAAKAPFMATFKVKRL-----EKDGLQCR-----------------SKSQ 1541 (1803)
T ss_pred hhcccCceecCCCCCceEEEeecCCCccchhhccCCeeEEEeeeec-----cCCccccc-----------------cccc
Confidence 9999999999999999999999999999999999999999999762 11111111 1123
Q ss_pred cccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHH
Q psy656 166 METWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYF 245 (427)
Q Consensus 166 ~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f 245 (427)
..+|+.+|||+|||||||+|++|+|++|.+||+..|+|+++.||+|+||+|+||+||+|||+.|++++|++++++|++||
T Consensus 1542 ~~~WQa~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~t~~glyeyF 1621 (1803)
T KOG0902|consen 1542 KISWQAAIFKVGDDCRQDMLALQIISLFKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGRETDNGLYEYF 1621 (1803)
T ss_pred chhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHcCCceEEeeeeeeccCCCCceEEeCCCCccHHHhcccccccHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCCCCCCccccHHH
Q psy656 246 IKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEM 325 (427)
Q Consensus 246 ~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~m 325 (427)
..+||++++..|++||.||++|+|||||++|+|+++||||||||+|..||++||||||||+.+||||++||+|||||+||
T Consensus 1622 ~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd~G~~iHIDFGf~~e~sPGgnl~fE~~fKLt~Em 1701 (1803)
T KOG0902|consen 1622 TRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDDQGHIIHIDFGFMFESSPGGNLGFEPPFKLTKEM 1701 (1803)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEccCCCEEEEeeeeEEecCCCCccCcCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy656 326 VMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRGQTIKLLRARFAPQATDKEAAAFMIGVIRN 405 (427)
Q Consensus 326 v~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~~~i~~l~~rf~l~~se~ea~~~~~~lI~~ 405 (427)
+.+|||..++..|++|.++|++||+++|+|++.|++++++|+++|||||++++|.+++.||++++||.||+.+|..+|.+
T Consensus 1702 ~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg~~i~nl~~RF~pemsereAa~fm~~vi~~ 1781 (1803)
T KOG0902|consen 1702 VMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRGQTIGNLRARFAPEMSEREAALFMLSVITD 1781 (1803)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCcchHHHHHHhhCcccchHHHHHHHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhHHHHHHHHHcCCCC
Q psy656 406 SFLNFRTRAYDYLQYYQNQIPC 427 (427)
Q Consensus 406 s~~~~~t~~yD~~Q~~~n~i~~ 427 (427)
|+.+|+|++||.|||+||||||
T Consensus 1782 ~~~~~rt~~YD~~Q~~~n~I~~ 1803 (1803)
T KOG0902|consen 1782 SYLKIRTKMYDQIQYLQNGIPY 1803 (1803)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998
No 2
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=2.3e-97 Score=737.10 Aligned_cols=310 Identities=69% Similarity=1.180 Sum_probs=291.7
Q ss_pred ccCCCCceeEeeeecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEE
Q psy656 94 YLPSNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAI 173 (427)
Q Consensus 94 ~lP~~P~~~v~~I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (427)
|||+||++.|.+|++++|++|+||||+|++++|++.+.+....+ ....+...++++|
T Consensus 1 ylP~~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~-----------------------~~~~~~~~~~~~I 57 (311)
T cd05167 1 YLPSNPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELE-----------------------EVDDGKVSWQACI 57 (311)
T ss_pred CCCCCCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccc-----------------------cccccccceEEEE
Confidence 89999999999999999999999999999999998765421111 0012233478999
Q ss_pred EEeCCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCC
Q psy656 174 FKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDET 253 (427)
Q Consensus 174 ~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~ 253 (427)
||+|||||||++++|+|++||+||+++++||+++||+|+|||+++|+||||+|+.|+++|++.....+.+||.+++++++
T Consensus 58 fK~gDDLRQD~l~~Qli~lm~~i~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~~~l~~~f~~~~~~~~ 137 (311)
T cd05167 58 FKVGDDCRQDMLALQLISLFKNIFQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTDNGLYEYFTSKYGDES 137 (311)
T ss_pred EeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcccHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCCCC-CCccccHHHHHHhCCC
Q psy656 254 SKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFE-PDIKLTDEMVMVMGGK 332 (427)
Q Consensus 254 ~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~-~PFrLT~~mv~~mGg~ 332 (427)
+..|.+|++||++|||||||+||||||||||||||||+.+||+|||||||+||.+||+++.+| +|||||+||+++|||.
T Consensus 138 ~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mGg~ 217 (311)
T cd05167 138 SLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMGGS 217 (311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcCCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhCCC
Confidence 899999999999999999999999999999999999999999999999999999999878887 5999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhh
Q psy656 333 IEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRGQTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRT 412 (427)
Q Consensus 333 ~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t 412 (427)
+.++.|++|+++|++||++||+|++.|++++++|+++++|||+.++|.++++||++++||+||+++|.++|++|+++|+|
T Consensus 218 ~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t 297 (311)
T cd05167 218 MEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRT 297 (311)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhH
Confidence 77899999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCC
Q psy656 413 RAYDYLQYYQNQIP 426 (427)
Q Consensus 413 ~~yD~~Q~~~n~i~ 426 (427)
++||.||+||||||
T Consensus 298 ~~yD~~q~~~~gi~ 311 (311)
T cd05167 298 KGYDQFQYYQNGIP 311 (311)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999997
No 3
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=7e-93 Score=712.67 Aligned_cols=339 Identities=28% Similarity=0.486 Sum_probs=305.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHhccCc----CCCCcccCCCCceeEeeeecCCCcccccCCCCCe
Q psy656 47 KAFYEREFEFFAQITDISGKIRPFPKGAERKRACLEELSKIK----VRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPY 122 (427)
Q Consensus 47 ~~~~~~q~~f~~~l~~is~~lk~~~~~~er~~~~~~~l~~i~----~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P~ 122 (427)
|+.+.+|.+++++|+++|+++|+.++ .+|+..+.++|++++ .+++++||+||++.|.+|++++|++|+|++ .|+
T Consensus 1 ~~~~~~Q~~~~~~L~~i~~~vk~~~~-~~r~~~l~~~L~~~~~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S~~-~Pl 78 (354)
T cd00895 1 REEFDRQCWLVNVLAKLAQQVREAAP-SARQGILREGLEEVKQFFSINGSCRLPLSPSLLVKGIVPRDCSYFNSNA-VPL 78 (354)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhhhhhccCCCCCcCCCCCCeEEEEEEcCceEEecccC-CCe
Confidence 57799999999999999999998764 467677777777653 467899999999999999999999999976 699
Q ss_pred eEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCC
Q psy656 123 LARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGL 202 (427)
Q Consensus 123 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~l 202 (427)
+++|++.+.. + ..+.+|||.|||||||++++|+|++|++||+++|+
T Consensus 79 ~l~f~~~d~~--------------------------------~--~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~l 124 (354)
T cd00895 79 KLSFQNVDPL--------------------------------G--ENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEGL 124 (354)
T ss_pred EEEEEecCCC--------------------------------C--CeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcCC
Confidence 9999864421 0 13789999999999999999999999999999999
Q ss_pred CceecCceEEEecCCcceeeeeCCCchhhhhhccC-------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy656 203 DLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT-------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIG 275 (427)
Q Consensus 203 dl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~-------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~t 275 (427)
|++++||+|+|||+++|+||||||+.|+++|.+.. +..+.+||.+.+ +++..|.+|++||++|||||||+|
T Consensus 125 dl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~g~~g~~~~~~l~~~l~~~~--~~~~~~~~a~~nFi~S~AgYsV~t 202 (354)
T cd00895 125 DMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEHGVTGSFKDRPLADWLQKHN--PTEDEYEKAVENFIYSCAGCCVAT 202 (354)
T ss_pred CceEEEEEEEecCCCceEEEEeCChhhHHHHHHHhCcCcccccchHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996532 346899998875 456789999999999999999999
Q ss_pred HhhccCCCCCCceeEccCCcEEEEecccccccCC-CCCCCCCC-CccccHHHHHHhCC-CcCCcchHHHHHHHHHHHHHH
Q psy656 276 FLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSP-GGNLGFEP-DIKLTDEMVMVMGG-KIEAAPFRWFMELCVQAFLAM 352 (427)
Q Consensus 276 YiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p-~~~~~~~~-PFrLT~~mv~~mGg-~~~~~~f~~F~~~c~~a~~~l 352 (427)
|||||||||||||||+++||+|||||||+||.+| ++++++++ ||+||+||+++||| ...+..|++|+++|++||++|
T Consensus 203 YiLgIgDRHndNImi~~~GhlfHIDFG~iLg~~~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~l 282 (354)
T cd00895 203 YVLGICDRHNDNIMLKTTGHMFHIDFGRFLGHAQMFGNIKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLI 282 (354)
T ss_pred HHccccccCCCceeEcCCCCEEEEeeHHhcCCCcccCCCCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 34556665 99999999999965 335788999999999999999
Q ss_pred hhchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHc
Q psy656 353 RPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQN 423 (427)
Q Consensus 353 R~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~~n 423 (427)
|+|+++|++|+++|+++++||++. ++++++++||+|++||+||+++|.++|++|++||+|++||.+|.+.|
T Consensus 283 Rk~~~~il~L~~lM~~sgiP~l~~~~~i~~l~~rf~l~~se~eA~~~f~~lI~~s~~s~~t~~~~~~H~~aq 354 (354)
T cd00895 283 RKHTHLFLNLLGLMLSCGIPELSDLEDLKYVYDALRPQDTEADATTYFTRLIESSLGSVATKLNFFIHNLAQ 354 (354)
T ss_pred HHhHHHHHHHHHHHHcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcC
Confidence 999999999999999999999986 68999999999999999999999999999999999999999998754
No 4
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.3e-89 Score=691.16 Aligned_cols=338 Identities=30% Similarity=0.530 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHhccCcC----CCCcccCCCCceeEeeeecCCCcccccCCCCCe
Q psy656 47 KAFYEREFEFFAQITDISGKIRPFPKGAERKRACLEELSKIKV----RPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPY 122 (427)
Q Consensus 47 ~~~~~~q~~f~~~l~~is~~lk~~~~~~er~~~~~~~l~~i~~----~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P~ 122 (427)
|+.+.+|.+++++|.+|+.++|+.+ +++|++.+.++|++++. +++++||+||++.|.+|++++|++|+|++ +|+
T Consensus 1 ~~~l~~q~~~~~~L~~~~~~vk~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~lPl~P~~~i~~i~~~~~~v~~S~~-~Pl 78 (354)
T cd05177 1 NKEFSKETKLISILIDAAEKVKTAS-DTRRKEVLKREASRLEDFFQDVVSCCLPLNPALRVKGIDADACSYFTSNA-APL 78 (354)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHhhhhccCCCCCccCCCCCeEEEEEecCccEEehhhc-CCC
Confidence 4678999999999999999999864 45667777777877642 35899999999999999999999999987 699
Q ss_pred eEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCC
Q psy656 123 LARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGL 202 (427)
Q Consensus 123 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~l 202 (427)
+++|++.+.. ...+.+|||+|||||||++++|+|++||++|+++|+
T Consensus 79 ~l~f~~~d~~----------------------------------~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~l 124 (354)
T cd05177 79 KISFINANPL----------------------------------AKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEGL 124 (354)
T ss_pred EEEEEecCCC----------------------------------CCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcCC
Confidence 9999854310 114899999999999999999999999999999999
Q ss_pred CceecCceEEEecCCcceeeeeCCCchhhhhhccC-------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy656 203 DLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT-------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIG 275 (427)
Q Consensus 203 dl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~-------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~t 275 (427)
|++++||+|+|||+++|+||||||+.|+++|.+.. +.++.+||.++++ ++..|.+|++||++|||||||+|
T Consensus 125 dl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~a~~nF~~S~Agysvvt 202 (354)
T cd05177 125 DMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRESGLIGPLKENTIEKWFHMHNK--LKEDYDKAVRNFFHSCAGWCVVT 202 (354)
T ss_pred CceEEEEEEEecCCCceEEEEeCChHhHHHHHHhhCCCcccchhhHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997643 3578999998764 45789999999999999999999
Q ss_pred HhhccCCCCCCceeEccCCcEEEEecccccccCCC-CCCCCC-CCccccHHHHHH--hCCCcCCcchHHHHHHHHHHHHH
Q psy656 276 FLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPG-GNLGFE-PDIKLTDEMVMV--MGGKIEAAPFRWFMELCVQAFLA 351 (427)
Q Consensus 276 YiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~-~~~~~~-~PFrLT~~mv~~--mGg~~~~~~f~~F~~~c~~a~~~ 351 (427)
|||||||||||||||+++||+|||||||+||.+|+ +++.++ +|||||+||+++ |||. ++..|++|+++|++||++
T Consensus 203 YiLGigDRHn~NILi~~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF~LT~emv~~~~~GG~-~s~~f~~F~~~c~~a~~~ 281 (354)
T cd05177 203 FILGVCDRHNDNIMLTHSGHMFHIDFGKFLGHAQTFGSIKRDRAPFIFTSEMEYFITEGGK-KPQRFQRFVELCCRAYNI 281 (354)
T ss_pred HHhcccCcCCCceeEcCCCCEEEEehHHhcCCCccccCCCcCCCCeeccHHHHHHhcCCCC-CchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999874 344455 599999999975 4776 578899999999999999
Q ss_pred HhhchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHc
Q psy656 352 MRPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQN 423 (427)
Q Consensus 352 lR~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~~n 423 (427)
||+|++.|++++++|+++|+|||+. ++++++++||+|++||+||+++|.++|++|+++|.|++.|.++.+.+
T Consensus 282 lR~~~~~il~l~~lm~~s~iP~~~~~~~i~~l~~~~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~~~~H~~aq 354 (354)
T cd05177 282 VRKHSQLLLNLLEMMLHAGLPELKDIQDLKYVYNNLRPQDTDLEATSYFTKKIKESLECFPVKLNNLIHTLAQ 354 (354)
T ss_pred HHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcC
Confidence 9999999999999999999999986 58999999999999999999999999999999999999999998753
No 5
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=5.5e-89 Score=684.29 Aligned_cols=339 Identities=29% Similarity=0.471 Sum_probs=297.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHH---HHhccCcCCCCcccCCCCceeEeeeecCCCcccccCCCCCee
Q psy656 47 KAFYEREFEFFAQITDISGKIRPFPKGAERKRACL---EELSKIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYL 123 (427)
Q Consensus 47 ~~~~~~q~~f~~~l~~is~~lk~~~~~~er~~~~~---~~l~~i~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P~~ 123 (427)
|+.+.+|.++++.|.+|+.++|..+. ..|+..+. +.|+..-.++.++||+||++.|.++.++.|++|+|++ .|++
T Consensus 1 r~~l~~Q~~~~~~L~~i~~~vk~~~~-~~~~~~l~~~~~~l~~~~~~~~~~lPl~p~~~~~~~~~~~c~v~~S~~-~Pl~ 78 (353)
T cd05176 1 REELEKQTRLVQLLGAVAEKVRQASS-STRQVVLQEGMERVQSFFQKNKCRLPLSPSLVAKELNIKVCSFFSSNA-VPLK 78 (353)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHhhcCCCCCCCCCCcceeEccEehheeEEecccC-CceE
Confidence 57789999999999999999997543 23443343 4444433456799999999999999999999999987 5999
Q ss_pred EEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCC
Q psy656 124 ARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLD 203 (427)
Q Consensus 124 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ld 203 (427)
++|+..+. . + ..+.+|||+|||||||+++||+|++||++|+++|+|
T Consensus 79 l~f~~~d~----------------~----------------g--~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~ld 124 (353)
T cd05176 79 IALVNADP----------------L----------------G--EEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEGLD 124 (353)
T ss_pred EEEEccCC----------------C----------------C--CEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCC
Confidence 99985331 0 1 138999999999999999999999999999999999
Q ss_pred ceecCceEEEecCCcceeeeeCCCchhhhhhccC-------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy656 204 LYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT-------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGF 276 (427)
Q Consensus 204 l~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~-------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tY 276 (427)
|+++||+|+|||+++|+||||||+.|+++|.+.. +..+.+|+.+..+ ++..|.+|++||++|||||||+||
T Consensus 125 L~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~a~~nFi~S~AgYsv~tY 202 (353)
T cd05176 125 LRMVIFKCLSTGKDRGMVELVPASETLRKIQVEYGVTGSFKDKPLAEWLRKYNP--AEEEYEKASENFIYSCAGCCVATY 202 (353)
T ss_pred eEEEEEEEEEcCCCceEEEEeCCcHhHHHHHHHhCcCCccccchHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999986532 2357788776653 457899999999999999999999
Q ss_pred hhccCCCCCCceeEccCCcEEEEecccccccCCC-CCCCCC-CCccccHHHHHHhCCCc-CCcchHHHHHHHHHHHHHHh
Q psy656 277 LLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPG-GNLGFE-PDIKLTDEMVMVMGGKI-EAAPFRWFMELCVQAFLAMR 353 (427)
Q Consensus 277 iLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~-~~~~~~-~PFrLT~~mv~~mGg~~-~~~~f~~F~~~c~~a~~~lR 353 (427)
||||||||||||||+.+||+|||||||+||.+|+ +++.++ +|||||+||+++|||.. .++.|++|+++|++||++||
T Consensus 203 iLGIgDRHn~NILi~~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LR 282 (353)
T cd05176 203 VLGICDRHNDNIMLRSTGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIR 282 (353)
T ss_pred hccccCcCCcceEEcCCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999873 334444 59999999999998743 34689999999999999999
Q ss_pred hchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHc
Q psy656 354 PYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQN 423 (427)
Q Consensus 354 ~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~~n 423 (427)
+|+++|++++++|+++++||+++ .+++++++||+|++||+||..+|.++|++|+++|+|+++|.+|.+.|
T Consensus 283 k~~~~il~L~~lM~~s~iP~~~~~~~i~~l~~r~~l~~sd~ea~~~f~~lI~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05176 283 KHSNLFLNLLSLMTQSGLPELTGVQDLKYVYDALQPQTTDAEATIFFTRLIESSLGSVATKFNFFIHNLAQ 353 (353)
T ss_pred HhHHHHHHHHHHHhCCCCcccCCchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHhHHHHHHHhcC
Confidence 99999999999999999999986 68999999999999999999999999999999999999999998864
No 6
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=1.4e-88 Score=686.32 Aligned_cols=339 Identities=30% Similarity=0.514 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHhccCc--CCCCcccCCCCceeEeeeecCCCcccccCCCCCeeE
Q psy656 47 KAFYEREFEFFAQITDISGKIRPFPKGAERKRACLEELSKIK--VRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLA 124 (427)
Q Consensus 47 ~~~~~~q~~f~~~l~~is~~lk~~~~~~er~~~~~~~l~~i~--~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P~~~ 124 (427)
|+.+.+|++|+++|++|+..+|+..++++|+..+.++|+.++ ++++++||+||++.|.+|++++|++|+|++ .|+++
T Consensus 1 r~~l~~q~~~~~~l~~i~~~ik~~~~~~~~~~~l~~~L~~~~~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~-~P~~l 79 (352)
T cd00891 1 RSELLKQVEVINELKTLAKKVKREKSKSQRKELLREELKKLENNLPQEFTLPLDPRLEIKGLIIEKCKVMDSKK-KPLWL 79 (352)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhhhccCCCCccCCCCCceEEEEEeccceEEecccc-CCcEE
Confidence 467899999999999999999998667899999999999987 788999999999999999999999999975 59999
Q ss_pred EEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCc
Q psy656 125 RFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDL 204 (427)
Q Consensus 125 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl 204 (427)
+|+..+.. ...+.+|||+|||||||+++||++++||++|+++++|+
T Consensus 80 ~f~~~d~~----------------------------------g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl 125 (352)
T cd00891 80 VFKNADPS----------------------------------GEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEGLDL 125 (352)
T ss_pred EEEecCCC----------------------------------CCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCCCCe
Confidence 99864310 01378999999999999999999999999999999999
Q ss_pred eecCceEEEecCCcceeeeeCCCchhhhhhccC--------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy656 205 YLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT--------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGF 276 (427)
Q Consensus 205 ~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~--------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tY 276 (427)
+++||+|+|||+++|+||||+|+.|+++|.+.. +..+.+|+.+++++ +..|.+|++||++|||||||+||
T Consensus 126 ~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~a~~nF~~S~A~ysv~~Y 203 (352)
T cd00891 126 RMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGGAFKDNPLMNWLKKKNKG--EEDYEKAVENFTYSCAGYCVATY 203 (352)
T ss_pred eeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCccccccccchHHHHHHHhCCC--HHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999997643 23688999988754 46899999999999999999999
Q ss_pred hhccCCCCCCceeEccCCcEEEEecccccccCCC-CCC-CCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhh
Q psy656 277 LLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPG-GNL-GFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRP 354 (427)
Q Consensus 277 iLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~-~~~-~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~ 354 (427)
||||||||||||||+++||+|||||||+||.+|+ +.+ ++.+|||||++|+++|||.+ +..|+.|+++|++||.+||+
T Consensus 204 iLgigDRH~~NILi~~~G~~~HIDFG~ilg~~~~~~~~~~E~~PFrLT~~mv~~mGg~~-s~~~~~F~~~c~~~~~~LR~ 282 (352)
T cd00891 204 VLGIGDRHNDNIMLTKTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMAYVMGGGD-SEKFQRFEDLCCKAYNILRK 282 (352)
T ss_pred HccccccCCCceEECCCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHHHHhCCCC-CcccchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998764 222 33469999999999999975 77899999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHc
Q psy656 355 YQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQN 423 (427)
Q Consensus 355 ~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~~n 423 (427)
|++.|++++++|+++|+|||++ +++.++++||++++||+||.++|.++|++|+++|+|++||.+|.+.+
T Consensus 283 ~~~~il~l~~lm~~~~lp~~~~~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~~~~~~~~h~~~~ 352 (352)
T cd00891 283 HGNLFINLFSLMLSAGIPELQSIEDIEYLRDALALDKSDEEATEYFRKLIHESLNSKTTKVNNFIHNLAH 352 (352)
T ss_pred CHHHHHHHHHhhccCCCCccCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcchHhHHHHHHHhhC
Confidence 9999999999999999999985 68999999999999999999999999999999999999999999853
No 7
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=2.4e-88 Score=683.05 Aligned_cols=340 Identities=27% Similarity=0.450 Sum_probs=297.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCC-----hH---HHHHHHHHHhccCcCCCCcccCCCCceeEeeeecCCCcccccCCC
Q psy656 48 AFYEREFEFFAQITDISGKIRPFPK-----GA---ERKRACLEELSKIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAK 119 (427)
Q Consensus 48 ~~~~~q~~f~~~l~~is~~lk~~~~-----~~---er~~~~~~~l~~i~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak 119 (427)
..+.+|.+++++|..|+..+|..+. +. +.++++++++..+.++++++||+||++.|.+|++++|++|+|+ +
T Consensus 2 ~~~~~q~~~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lPl~P~~~~~~i~~~~~~v~~S~-~ 80 (365)
T cd00894 2 HDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNLNLPESFRVPYDPGLRAGALVIEKCKVMASK-K 80 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhccCCCCCCCCCCCceEEEEEEcCceEEEccc-C
Confidence 4578999999999999999998542 11 2344566677767788899999999999999999999999998 5
Q ss_pred CCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHH
Q psy656 120 APYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQ 199 (427)
Q Consensus 120 ~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~ 199 (427)
.|++++|++.+... .....+.+|||+|||||||+++||+|++||+||++
T Consensus 81 ~Pl~l~f~~~d~~~-------------------------------~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~ 129 (365)
T cd00894 81 KPLWLEFKCADPTA-------------------------------LSNETIGIIFKHGDDLRQDMLILQILRIMESIWET 129 (365)
T ss_pred CceEEEEECCCCCc-------------------------------cCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHH
Confidence 69999999644210 00113789999999999999999999999999999
Q ss_pred cCCCceecCceEEEecCCcceeeeeCCCchhhhhhccC--------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Q psy656 200 VGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT--------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAY 271 (427)
Q Consensus 200 ~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~--------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~y 271 (427)
+++||+++||+|+|||+++|+||||+||.|+++|.+.. +..+.+||.++++ +++.|.+|++||++|||||
T Consensus 130 ~~ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~~~~a~~nFi~S~AgY 207 (365)
T cd00894 130 ESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLSHWLKEKCP--IEEKFQAAVERFVYSCAGY 207 (365)
T ss_pred cCCCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcccccccccchhHHHHHHHhCC--CHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999997642 2458899999874 4578999999999999999
Q ss_pred HHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCC-CCCC-CCCccccHHHHHHhCCC--cCCcchHHHHHHHHH
Q psy656 272 SVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGG-NLGF-EPDIKLTDEMVMVMGGK--IEAAPFRWFMELCVQ 347 (427)
Q Consensus 272 sv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~-~~~~-~~PFrLT~~mv~~mGg~--~~~~~f~~F~~~c~~ 347 (427)
||+||||||||||||||||+++||+|||||||+||++|+. .+.+ .+|||||++|+++||+. ..+..|+.|+++|++
T Consensus 208 sV~tYiLGIgDRHndNImi~~~G~lfHIDFG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~ 287 (365)
T cd00894 208 CVATFVLGIGDRHNDNIMITETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVK 287 (365)
T ss_pred HHHHHhccccCccccceeEcCCCCEEEEeeHHhhCCCCccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998641 2333 46999999999999843 257789999999999
Q ss_pred HHHHHhhchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHH
Q psy656 348 AFLAMRPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYY 421 (427)
Q Consensus 348 a~~~lR~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~ 421 (427)
||++||+|+++|++++++|+++++||++. +++++|++||++++||+||+++|.++|++|+++++|..||+|...
T Consensus 288 a~~~LRk~~~lil~L~~lM~~sgip~l~~~~~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~n~~~h~ 362 (365)
T cd00894 288 AYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQFNWFLHL 362 (365)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeeeHHHHHH
Confidence 99999999999999999999999999985 689999999999999999999999999999998777777777654
No 8
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=1.8e-87 Score=677.29 Aligned_cols=336 Identities=29% Similarity=0.481 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCC-hHHHHHHHHHHhccC-----cCCCCcccCCCCceeEeeeecCCCcccccCCCCC
Q psy656 48 AFYEREFEFFAQITDISGKIRPFPK-GAERKRACLEELSKI-----KVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAP 121 (427)
Q Consensus 48 ~~~~~q~~f~~~l~~is~~lk~~~~-~~er~~~~~~~l~~i-----~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P 121 (427)
+.+.+|.+|+++|++|++.+|.... +++|...+.+.|+++ ..+++++||+||++.|.+|++++|++|+|+ ++|
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~lP~dp~~~i~~i~~~~~~v~~S~-~~P 80 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEYELLLDFEPIPLPLDPSIEITGIIPEESSVFKSA-LMP 80 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhccccccccCCCCCcCCCCCCeEEEEEecCceEEeccc-cCc
Confidence 5688999999999999999998643 345555566666654 346899999999999999999999999996 579
Q ss_pred eeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcC
Q psy656 122 YLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVG 201 (427)
Q Consensus 122 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ 201 (427)
++++|+..+.+ ....+.+|||+|||||||+++||++++||++|++++
T Consensus 81 ~~l~f~~~dg~---------------------------------~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ 127 (350)
T cd00896 81 LKLTFKTEKGN---------------------------------EEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKEN 127 (350)
T ss_pred eEEEEEeCCCC---------------------------------CCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCC
Confidence 99999864421 012589999999999999999999999999999999
Q ss_pred CCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHH--HHHHHHHHHHHHHHHHHHHHhhc
Q psy656 202 LDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKE--FQNARRNFVRSMAAYSVIGFLLQ 279 (427)
Q Consensus 202 ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~--~~~ar~nF~~S~A~ysv~tYiLg 279 (427)
+|++++||+|+|||+++|+||||+ +.|+++|.+.. ..+.+||.++++++.+.. |.+|++||++|||||||+|||||
T Consensus 128 ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~-~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLG 205 (350)
T cd00896 128 LDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKY-GGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILG 205 (350)
T ss_pred CCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHH-HHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999 99999997653 348999999987654432 67999999999999999999999
Q ss_pred cCCCCCCceeEccCCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHH
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESI 359 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~i 359 (427)
|||||||||||+.+||+|||||||+||++|+ ++.+|||||++|+++|||.+ ++.|+.|+++|++||.+||+|++.|
T Consensus 206 igDRH~~NILi~~~G~~~HIDFG~ilg~~p~---~~~~PFrLT~~mv~~mGg~~-s~~~~~F~~~c~~~~~~lR~~~~~i 281 (350)
T cd00896 206 VGDRHLDNLLLTKDGKLFHIDFGYILGRDPK---PFPPPMKLCKEMVEAMGGAQ-SEGYQEFKSYCCEAYNILRKSANLI 281 (350)
T ss_pred ccccCCCcEEEcCCCCEEEEEhHHhhCCCCC---CCCCCeeccHHHHHHhCCCC-CcchHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999999999999999986 57789999999999999985 6779999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCc---hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHc
Q psy656 360 ISLVSLMLDTGLPCFR---GQTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQN 423 (427)
Q Consensus 360 i~ll~lm~~~~lp~~~---~~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~~n 423 (427)
++++++|+++++||++ .+++.++++||++++||+||.++|.++|++|+++|+|++||.+|.|.+
T Consensus 282 l~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq 348 (350)
T cd00896 282 LNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAIKHFQNLINDSVNALFPVVVDRLHAWAQ 348 (350)
T ss_pred HHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999998 368999999999999999999999999999999999999999999976
No 9
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=4.3e-87 Score=674.74 Aligned_cols=338 Identities=29% Similarity=0.478 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHhccCc---CCCCcccCCCCceeEeeeecCCCcccccCCCCCeeE
Q psy656 48 AFYEREFEFFAQITDISGKIRPFPKGAERKRACLEELSKIK---VRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLA 124 (427)
Q Consensus 48 ~~~~~q~~f~~~l~~is~~lk~~~~~~er~~~~~~~l~~i~---~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P~~~ 124 (427)
+.+.+|++|+++|++|+..+|+.++ .+|+..+.++|+.++ .+++++||+||++.|.+|.+++|++|+|++ .|+++
T Consensus 2 ~~l~~q~~~~~~l~~i~~~vk~~~~-~~~~~~l~~~l~~~~~~~~~~~~~lP~~p~~~~~~i~~~~~~v~~S~~-~P~~l 79 (353)
T cd05166 2 EEFKKQHKLVNKLGSIAEDVKSASE-SARQHVLRTGLGRVDSFLLQNKCRLPLNPALDVKGIDVRECSYFNSNA-LPLKI 79 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhhhccCCCCccCCCCceEEEeEEcCceEEecccc-CceEE
Confidence 4688999999999999999999764 467666766776654 456899999999999999999999999987 59999
Q ss_pred EEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCc
Q psy656 125 RFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDL 204 (427)
Q Consensus 125 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl 204 (427)
+|+..+. . + ..+.+|||+|||||||+++||+|++||++|+++++|+
T Consensus 80 ~f~~~d~----------------~----------------g--~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~ldL 125 (353)
T cd05166 80 SFVNADP----------------M----------------G--ENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEGLDL 125 (353)
T ss_pred EEEecCC----------------C----------------C--CEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9984321 0 0 1378999999999999999999999999999999999
Q ss_pred eecCceEEEecCCcceeeeeCCCchhhhhhccC-------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy656 205 YLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT-------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFL 277 (427)
Q Consensus 205 ~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~-------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYi 277 (427)
+++||+|+|||+++|+||||+|+.|+++|.+.. +..+.+||.++++ ++..|.+|++||++|||||||+|||
T Consensus 126 ~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g~~~~~~~~~l~~~l~~~~~--~~~~~~~a~~nF~~S~A~ysvv~Yi 203 (353)
T cd05166 126 RMITFRCLSTGYDRGMVELVPDAETLRKIQVEEGLTGSFKDRPIAKWLMKHNP--SELEYEKAVENFIYSCAGCCVATYV 203 (353)
T ss_pred eeEEEEEEEcCCCcceEEEeCCchhHHHHHHHhCccccccchhHHHHHHHhCC--ChHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999996542 2368899998864 4578999999999999999999999
Q ss_pred hccCCCCCCceeEccCCcEEEEecccccccCCC-CCCCCC-CCccccHHHHHHhCCC-cCCcchHHHHHHHHHHHHHHhh
Q psy656 278 LQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPG-GNLGFE-PDIKLTDEMVMVMGGK-IEAAPFRWFMELCVQAFLAMRP 354 (427)
Q Consensus 278 LgigDRH~~NIll~~~G~l~HIDFG~if~~~p~-~~~~~~-~PFrLT~~mv~~mGg~-~~~~~f~~F~~~c~~a~~~lR~ 354 (427)
|||||||||||||+++||+|||||||+||..|+ +.+.+| +|||||++|+++|||. +.++.|+.|+++|++||++||+
T Consensus 204 LgigDRH~~NILl~~~G~l~HIDFG~~lg~~~~~~~~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk 283 (353)
T cd05166 204 LGICDRHNDNIMLTKSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRK 283 (353)
T ss_pred hhccccCCCceEECCCCCEEEEeeHHhcccccccccCCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998763 334444 5999999999999864 3578899999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHc
Q psy656 355 YQESIISLVSLMLDTGLPCFR-GQTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQN 423 (427)
Q Consensus 355 ~~~~ii~ll~lm~~~~lp~~~-~~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~~n 423 (427)
|++.|++++++|+++++|||+ .++++++++||++++||+||+++|.++|++|++||+|++.|.++.+.|
T Consensus 284 ~~~~il~ll~~ml~s~lp~~~~~~~i~~l~~r~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05166 284 HANLLLNLLRMMACSGLPELSKIQDLKYVRDALRPQLTDAEATIQFTKMIQSSLGSAFTKLNFFIHNLAQ 353 (353)
T ss_pred ChHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 999999999999999999998 578999999999999999999999999999999999999999998754
No 10
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=6.2e-88 Score=664.48 Aligned_cols=287 Identities=46% Similarity=0.755 Sum_probs=273.1
Q ss_pred eeecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHH
Q psy656 105 DIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDM 184 (427)
Q Consensus 105 ~I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~ 184 (427)
+|++-++++++|++++|+++.|++.+++ +..+.+|||+|||||||+
T Consensus 2 ~~~~~~~k~~~~~~~~P~~~~~~~~~~~----------------------------------~~~~~~i~K~gDDLRqD~ 47 (289)
T cd00893 2 SKIYISPKILQSALKIPYLELKKLTDST----------------------------------LINSEFIVKCGDDLRQDI 47 (289)
T ss_pred CcccccchHHHHhhcCchhhccCccCCC----------------------------------CeeEEEEEECCCcccHHH
Confidence 5778899999999999999999865532 124789999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHH
Q psy656 185 LALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNF 264 (427)
Q Consensus 185 l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF 264 (427)
++||+|++||.+|+++++|++++||+|+|||+++|+||||+|+.|++++.++...++++||.++++++++..|.+|++||
T Consensus 48 l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~~s~~~GlIE~V~ns~tl~~i~~~~~~~l~~~~~~~~~~~~~~~~~~a~~nF 127 (289)
T cd00893 48 LATQIITELQKIFELMFLDLWLNPYLVLPVSKTGGIIEFIPNSISIHEIKKQQINSLYDYFLELYGSYTTEAFLQARYNF 127 (289)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCceeEEEeCCchhHHHHHHhccccHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887778999999999988889999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCCCC-CCccccHHHHHHhCCCcCCcchHHHHH
Q psy656 265 VRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFE-PDIKLTDEMVMVMGGKIEAAPFRWFME 343 (427)
Q Consensus 265 ~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~-~PFrLT~~mv~~mGg~~~~~~f~~F~~ 343 (427)
++|||||||+|||||||||||+||||+++||+|||||||+||.+||+++++| +|||||++|+++|||.+ ++.|+.|++
T Consensus 128 ~~SlA~ySvv~YiLgigDRH~~NILid~~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~-s~~f~~F~~ 206 (289)
T cd00893 128 IESMAGYSLLCYLLQIKDRHNGNILLDSDGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKK-SDDFKKFRY 206 (289)
T ss_pred HHHHHHHHHHHHHhhccccCCCceEECCCCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCC-ChhHHHHHH
Confidence 9999999999999999999999999999999999999999999998777776 69999999999999986 788999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhCCCCCCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHc
Q psy656 344 LCVQAFLAMRPYQESIISLVSLMLDTGLPCFRGQTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQN 423 (427)
Q Consensus 344 ~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~~n 423 (427)
+|++||.+||+|++.|++++++|+++++|||+.++++++++||++++||++|+++|.++|++|++||+|++||.||||||
T Consensus 207 ~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 286 (289)
T cd00893 207 LCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRGSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLYDKVQYYQN 286 (289)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHccCCCcccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy656 424 QIP 426 (427)
Q Consensus 424 ~i~ 426 (427)
|||
T Consensus 287 gi~ 289 (289)
T cd00893 287 GII 289 (289)
T ss_pred CCC
Confidence 997
No 11
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=5.2e-87 Score=671.35 Aligned_cols=339 Identities=27% Similarity=0.463 Sum_probs=289.4
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCChHHHH---HHHHHHhccC---cCCCCcccCCCCceeEeeeecCCCcccccCCCCC
Q psy656 48 AFYEREFEFFAQITDISGKIRPFPKGAERK---RACLEELSKI---KVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAP 121 (427)
Q Consensus 48 ~~~~~q~~f~~~l~~is~~lk~~~~~~er~---~~~~~~l~~i---~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P 121 (427)
+.+.+|++++++|++++..+|....+..++ +.+++.|+.- ...++++||+||++.|.+|.+++|++|+|+. .|
T Consensus 2 ~~l~~Q~~~~~~L~~~~~~ik~~~~~~~~k~~~~~l~~~l~~~~~~~~~~~~~lPl~P~~~~~~i~~e~c~v~~S~~-~P 80 (366)
T cd05175 2 KHLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFTSPLNPAHQLGNLRLEECRIMSSAK-RP 80 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcCchhhhccCCCCCCCCCceEEEEEEeccceeechhc-CC
Confidence 357899999999999999999754332222 2344555442 2336899999999999999999999999965 69
Q ss_pred eeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcC
Q psy656 122 YLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVG 201 (427)
Q Consensus 122 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ 201 (427)
++++|++.+... +.....+.+|||+|||||||++++|+|++||+||+++|
T Consensus 81 l~l~f~~~d~~~------------------------------~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ 130 (366)
T cd05175 81 LWLNWENPDIMS------------------------------ELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG 130 (366)
T ss_pred eEEEEEcCCccc------------------------------ccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCC
Confidence 999999543210 00012478999999999999999999999999999999
Q ss_pred CCceecCceEEEecCCcceeeeeCCCchhhhhhccC---------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH
Q psy656 202 LDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT---------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYS 272 (427)
Q Consensus 202 ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~---------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ys 272 (427)
+||+++||+|+|||+++|+||||+|+.|+++|.+.. ...+.+|+.+.++ ++.|.+|++||++||||||
T Consensus 131 ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~a~~nF~~S~AgYs 207 (366)
T cd05175 131 LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTLHQWLKDKNK---GEMYDAAIDLFTRSCAGYC 207 (366)
T ss_pred CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhccccccccccCchhHHHHHhhcCC---cHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986532 2358889888763 4579999999999999999
Q ss_pred HHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCC---CCCCccccHHHHHHhCCC----cCCcchHHHHHHH
Q psy656 273 VIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLG---FEPDIKLTDEMVMVMGGK----IEAAPFRWFMELC 345 (427)
Q Consensus 273 v~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~---~~~PFrLT~~mv~~mGg~----~~~~~f~~F~~~c 345 (427)
|+||||||||||||||||+.+||+|||||||+||.+|+ +++ +.+|||||+||+++|||- ..++.|++|+++|
T Consensus 208 V~tYiLGIgDRHndNImi~~~G~l~HIDFG~iLg~~p~-~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc 286 (366)
T cd05175 208 VATFILGIGDRHNSNIMVKDDGQLFHIDFGHFLDHKKK-KFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMC 286 (366)
T ss_pred HHHHHhcccccCccceeEcCCCCEEEEehHHhhcCCCc-cCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999985 333 346999999999999742 1467899999999
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh-chhhhHHHHHHHH
Q psy656 346 VQAFLAMRPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFL-NFRTRAYDYLQYY 421 (427)
Q Consensus 346 ~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~-~~~t~~yD~~Q~~ 421 (427)
++||++||+|+++|++++++|+++++||+++ +++++||+||+|++||+||.++|.++|++|++ +|+|++-..++.+
T Consensus 287 ~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~~~~i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~~n~~~H~~ 364 (366)
T cd05175 287 YKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTKMDWIFHTI 364 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceeeehHHHHhh
Confidence 9999999999999999999999999999986 68999999999999999999999999999987 6999955445544
No 12
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=1.1e-86 Score=672.36 Aligned_cols=339 Identities=26% Similarity=0.437 Sum_probs=291.8
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCC----hHHHHHHHHHHhcc---CcCCCCcccCCCCceeEeeeecCCCcccccCCCC
Q psy656 48 AFYEREFEFFAQITDISGKIRPFPK----GAERKRACLEELSK---IKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKA 120 (427)
Q Consensus 48 ~~~~~q~~f~~~l~~is~~lk~~~~----~~er~~~~~~~l~~---i~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~ 120 (427)
+.+.+|++++++|++++..+|.... +.+|+..+.+.|+. ..++.+++||+||++.|.+|.+++|++|+|+. .
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lPl~P~~~v~~i~~~~~~v~~Sk~-~ 80 (366)
T cd05165 2 KDLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLANLDLLQSFQSPLNPSLKLGELRIEKCKVMDSKK-K 80 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccchhcccccCCCCCCCceeEeeeecCceEEehhhc-C
Confidence 4578999999999999999998542 23344444444543 34567899999999999999999999999976 5
Q ss_pred CeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHc
Q psy656 121 PYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQV 200 (427)
Q Consensus 121 P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~ 200 (427)
|++++|+..+.+. . ....+.+|||+|||||||+++||+|++||.||+++
T Consensus 81 P~~l~f~~~d~~~--------------~-----------------~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~ 129 (366)
T cd05165 81 PLWLVFENADPTA--------------L-----------------SNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEE 129 (366)
T ss_pred CcEEEEEccCccc--------------c-----------------cCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhC
Confidence 9999999644210 0 01138999999999999999999999999999999
Q ss_pred CCCceecCceEEEecCCcceeeeeCCCchhhhhhccCC---------cchHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Q psy656 201 GLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTD---------IGMYEYFIKTYGDETSKEFQNARRNFVRSMAAY 271 (427)
Q Consensus 201 ~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~---------~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~y 271 (427)
++|++++||+|+|||+++|+||||+|+.|+++|.+... ..+.+||.++++ ++..|.+|++||++|||||
T Consensus 130 ~ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~f~~~~l~~wl~~~~~--~~~~~~~a~~nF~~S~Agy 207 (366)
T cd05165 130 GLDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNATAAFKKEALLHWLKEKNP--TEEKLDAAIEEFTLSCAGY 207 (366)
T ss_pred CCCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhcccccccccCcHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976432 258899988764 3578999999999999999
Q ss_pred HHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCC-CC-CCCCCccccHHHHHHhCCCc---CCcchHHHHHHHH
Q psy656 272 SVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGG-NL-GFEPDIKLTDEMVMVMGGKI---EAAPFRWFMELCV 346 (427)
Q Consensus 272 sv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~-~~-~~~~PFrLT~~mv~~mGg~~---~~~~f~~F~~~c~ 346 (427)
||+||||||||||||||||+++||+|||||||+||.+|+. .+ ++.+|||||++|+++||+.+ +++.|+.|+++|+
T Consensus 208 svvtYiLGigDRH~~NILi~~~G~l~HIDFG~ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~ 287 (366)
T cd05165 208 CVATFVLGIGDRHNDNIMVKETGQLFHIDFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCE 287 (366)
T ss_pred HHHHHHhhccccCCcceEEcCCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHH
Confidence 9999999999999999999999999999999999998742 12 33469999999999998532 5789999999999
Q ss_pred HHHHHHhhchHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh-chhhhHHHHHHH
Q psy656 347 QAFLAMRPYQESIISLVSLMLDTGLPCFR-GQTIKLLRARFAPQATDKEAAAFMIGVIRNSFL-NFRTRAYDYLQY 420 (427)
Q Consensus 347 ~a~~~lR~~~~~ii~ll~lm~~~~lp~~~-~~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~-~~~t~~yD~~Q~ 420 (427)
+||++||+|++.|++++++|+++++|||+ .++|+++|+||++++||+||.++|.++|++|++ +|+|++-..++.
T Consensus 288 ~a~~~LR~~~~~il~l~~lM~~s~ip~~~~~~~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t~~~~~~H~ 363 (366)
T cd05165 288 KAYLALRRHGNLLIILFSMMLMSGLPELTSKEDIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTTKFNWFSHL 363 (366)
T ss_pred HHHHHHHhCHHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeeHHHHHH
Confidence 99999999999999999999999999998 468999999999999999999999999999998 678854444443
No 13
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=3e-86 Score=668.41 Aligned_cols=337 Identities=26% Similarity=0.419 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCC---ChHHHHHHHHHHhccC---cCCCCcccCCCCceeEeeeecCCCcccccCCCCC
Q psy656 48 AFYEREFEFFAQITDISGKIRPFP---KGAERKRACLEELSKI---KVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAP 121 (427)
Q Consensus 48 ~~~~~q~~f~~~l~~is~~lk~~~---~~~er~~~~~~~l~~i---~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P 121 (427)
+.+.+|.+++++|.+++..+|... .+.++++.+.+.|++- ..-++++||+||++.|.+|.+++|++|+|+++ |
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S~~~-P 80 (362)
T cd05173 2 KVLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSAYREALSDLQSPLNPSIILSELNVEKCKYMDSKMK-P 80 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhcccchhcccCCCCCCCCceEEEEEEcCceEEecccCC-C
Confidence 457899999999999999999742 2334444444445432 33468999999999999999999999999886 9
Q ss_pred eeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcC
Q psy656 122 YLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVG 201 (427)
Q Consensus 122 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ 201 (427)
++++|+..+.+ + ..+.+|||+|||||||+++||+|++||+||+++|
T Consensus 81 l~l~f~~~~~~--------------------------------g--~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~~ 126 (362)
T cd05173 81 LWIVYNNKLFG--------------------------------G--DSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEAG 126 (362)
T ss_pred eEEEEeecCCC--------------------------------C--CEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCC
Confidence 99999853211 0 1388999999999999999999999999999999
Q ss_pred CCceecCceEEEecCCcceeeeeCCCchhhhhhccC----------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Q psy656 202 LDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT----------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAY 271 (427)
Q Consensus 202 ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~----------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~y 271 (427)
+||+++||+|+|||+++|+||||+||.|+++|.... ...+.+||.+.+. +..|.+|++||++|||||
T Consensus 127 ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~f~~~~l~~~l~~~~~---~~~~~~a~~nF~~S~AgY 203 (362)
T cd05173 127 LDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNVAAAAAFNKDALLNWLKEYNS---GDDLERAIEEFTLSCAGY 203 (362)
T ss_pred CCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhccccchhcccChhHHHHHHHhcCC---cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986421 2358889887542 357889999999999999
Q ss_pred HHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCC-CC-CCCCCccccHHHHHHhC-C-CcCCcchHHHHHHHHH
Q psy656 272 SVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGG-NL-GFEPDIKLTDEMVMVMG-G-KIEAAPFRWFMELCVQ 347 (427)
Q Consensus 272 sv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~-~~-~~~~PFrLT~~mv~~mG-g-~~~~~~f~~F~~~c~~ 347 (427)
||+||||||||||||||||+.+||+|||||||+||..|+. .+ ++.+|||||++|+++|| | .|+++.|+.|+++|++
T Consensus 204 svvtYILGIGDRHn~NILi~~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~ 283 (362)
T cd05173 204 CVATYVLGIGDRHSDNIMVRKNGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCED 283 (362)
T ss_pred HHHHHHhhccccCCCceEECCCCCEEEEehHHhhccCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999987632 12 33459999999999996 4 3457889999999999
Q ss_pred HHHHHhhchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh-chhhhHHHHHHHHH
Q psy656 348 AFLAMRPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFL-NFRTRAYDYLQYYQ 422 (427)
Q Consensus 348 a~~~lR~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~-~~~t~~yD~~Q~~~ 422 (427)
||++||+|+++|++++++|+++|+||+++ ++|++|++||++++||+||+++|.++|++|++ +|+|++...++.+.
T Consensus 284 a~~~LRk~~~lil~l~~lM~~s~ip~~~~~~~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~n~~~H~~~ 360 (362)
T cd05173 284 AYLILRKNGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKVNWMAHTVR 360 (362)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCccccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999986 68999999999999999999999999999994 89999999988874
No 14
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.1e-85 Score=662.91 Aligned_cols=337 Identities=23% Similarity=0.365 Sum_probs=290.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCC---hHHHHHHHHHHhccC---cCCCCcccCCCCceeEeeeecCCCcccccCCCCC
Q psy656 48 AFYEREFEFFAQITDISGKIRPFPK---GAERKRACLEELSKI---KVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAP 121 (427)
Q Consensus 48 ~~~~~q~~f~~~l~~is~~lk~~~~---~~er~~~~~~~l~~i---~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P 121 (427)
+.+.||.+++++|..|+..+|.... +..+++.+.+.|++- .....++||+||+..+.+|.++.|++|+|+++ |
T Consensus 2 ~~l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lPl~p~~~~~~~~~~~~~v~~Sk~~-P 80 (361)
T cd05174 2 KVLMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQETYLEALSHLQSPLSPSIILCEVCVDQCTFMDSKMK-P 80 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCchhhhhhccCCCCCCCceEEEEEEcCcEEEEeccCC-c
Confidence 4578999999999999999997421 122223333333332 22346899999999999999999999999886 9
Q ss_pred eeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcC
Q psy656 122 YLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVG 201 (427)
Q Consensus 122 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ 201 (427)
++++|+..+.+ + ..+.+|||+|||||||+++||+|++||.+|++++
T Consensus 81 l~l~f~~~~~~--------------------------------g--~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~ 126 (361)
T cd05174 81 LWIMYKNEEAG--------------------------------G--GSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEG 126 (361)
T ss_pred eEEEEeecCCC--------------------------------C--CEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCC
Confidence 99999853311 0 1389999999999999999999999999999999
Q ss_pred CCceecCceEEEecCCcceeeeeCCCchhhhhhccC----------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Q psy656 202 LDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT----------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAY 271 (427)
Q Consensus 202 ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~----------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~y 271 (427)
+||+++||+|+|||+++|+||||+||.|+++|.+.. ...+.+||.+++++ +.|.+|++||++|||||
T Consensus 127 ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~~~~~~f~~~~l~~~l~~~~~~---~~~~~A~~nF~~S~Agy 203 (361)
T cd05174 127 LDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNMAATAAFNKDALLNWLKSKNPG---DALDQAIEEFTLSCAGY 203 (361)
T ss_pred CCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhcccchhccccchHHHHHHHhcCCc---HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996532 13688899887643 46889999999999999
Q ss_pred HHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCC-CC-CCCCCccccHHHHHHhCC--CcCCcchHHHHHHHHH
Q psy656 272 SVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGG-NL-GFEPDIKLTDEMVMVMGG--KIEAAPFRWFMELCVQ 347 (427)
Q Consensus 272 sv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~-~~-~~~~PFrLT~~mv~~mGg--~~~~~~f~~F~~~c~~ 347 (427)
||+||||||||||||||||+++||+|||||||+||..|+. .+ ++.+|||||++|+++||+ .+.++.|+.|+++|++
T Consensus 204 sVvtYiLGIGDRHn~NILi~~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~ 283 (361)
T cd05174 204 CVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQ 283 (361)
T ss_pred HHHHHHhcccCcCccceeEcCCCCEEEEehHHhhcCCcccCCCCCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHH
Confidence 9999999999999999999999999999999999987632 12 334599999999999962 3467899999999999
Q ss_pred HHHHHhhchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHH
Q psy656 348 AFLAMRPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSF-LNFRTRAYDYLQYYQ 422 (427)
Q Consensus 348 a~~~lR~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~-~~~~t~~yD~~Q~~~ 422 (427)
||++||+|+++|++++++|+++|+||++. +++++|++||+|++||+||+++|.++|++|+ ++|+|++...++.+.
T Consensus 284 a~~~LRk~~~~il~l~~lM~~sgip~~~~~~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~n~~~H~~a 360 (361)
T cd05174 284 AYKILRRHGTLFLHLFALMKAAGLPELNCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWLAHNVS 360 (361)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhhHHHHHhhc
Confidence 99999999999999999999999999975 6899999999999999999999999999999 689999998888653
No 15
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=3.9e-80 Score=610.16 Aligned_cols=253 Identities=46% Similarity=0.823 Sum_probs=241.1
Q ss_pred eEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccC---CcchHHHHH
Q psy656 170 QAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT---DIGMYEYFI 246 (427)
Q Consensus 170 ~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~---~~~l~~~f~ 246 (427)
+.+|||+|||||||+++||+|++||.||++++++++++||+|+|||+++|+||||+|+.|+++|++.. ..++.+||.
T Consensus 33 ~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~~i~k~~~~~~~~l~~~f~ 112 (293)
T cd05168 33 RSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIPDTVSIDSLKKKLTSKFKSLLDFFK 112 (293)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeCCchhHHHHHHHhccCCchHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999998764 468999999
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCCCC-CCccccHHH
Q psy656 247 KTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFE-PDIKLTDEM 325 (427)
Q Consensus 247 ~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~-~PFrLT~~m 325 (427)
+.++++ +..|.+|++||++|||||||+|||||||||||+||||+++||+||||||++||.+|++ +.+| +|||||++|
T Consensus 113 ~~~~~~-~~~~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~~G~liHIDFG~~fg~~~~~-~~~E~vPFrLT~~m 190 (293)
T cd05168 113 KTFGDP-SERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDNDGHIIHIDFGFMLSNSPGN-VGFETAPFKLTQEY 190 (293)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcCCCCEEEEehHHhhcccccC-CCCCCCCEEecHHH
Confidence 999876 6789999999999999999999999999999999999999999999999999999976 5555 699999999
Q ss_pred HHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhC-CCCCCc--hHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy656 326 VMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDT-GLPCFR--GQTIKLLRARFAPQATDKEAAAFMIGV 402 (427)
Q Consensus 326 v~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~-~lp~~~--~~~i~~l~~rf~l~~se~ea~~~~~~l 402 (427)
+++|||.+ +..|+.|+.+|++||.+||+|++.|++++++|+++ ++|||+ .++++++++||++++||++|+++|.++
T Consensus 191 v~~mGg~~-s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~~l 269 (293)
T cd05168 191 IEVMGGVN-SDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVDEL 269 (293)
T ss_pred HHHhCCCC-CchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999985 67899999999999999999999999999999987 999999 578999999999999999999999999
Q ss_pred HHHhhhchhhhHHHHHHHHHcCC
Q psy656 403 IRNSFLNFRTRAYDYLQYYQNQI 425 (427)
Q Consensus 403 I~~s~~~~~t~~yD~~Q~~~n~i 425 (427)
|++|+++|+|++||+|||+||||
T Consensus 270 I~~s~~~~~t~~yD~~q~~~~gi 292 (293)
T cd05168 270 INQSLDNWRTRLYDKFQYLTNGI 292 (293)
T ss_pred HHHHHhchhHHHHHHHHHHhcCC
Confidence 99999999999999999999998
No 16
>KOG0906|consensus
Probab=100.00 E-value=9.6e-76 Score=606.47 Aligned_cols=355 Identities=29% Similarity=0.480 Sum_probs=305.5
Q ss_pred hHHHHHHHHHHHHHcC----Ccc-hHHHHHHHHHHHHHHHHHhcccCCC----CChHHHHHHHHHHhccCcC--CCCccc
Q psy656 27 LYDTLDSLVQALVASF----SGP-AKAFYEREFEFFAQITDISGKIRPF----PKGAERKRACLEELSKIKV--RPGCYL 95 (427)
Q Consensus 27 ~~~~l~~~~~~i~~~~----~~~-~~~~~~~q~~f~~~l~~is~~lk~~----~~~~er~~~~~~~l~~i~~--~~~~~l 95 (427)
...++..++..++.++ ++. .+..+.+|..|+++|..|...++.. .+|.||++.++....+.++ ..++.|
T Consensus 470 ~~kry~si~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~~~~~~l~~~~~i~l 549 (843)
T KOG0906|consen 470 YSKRYLSIMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGDHKHMNLLDVRLIAL 549 (843)
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhcccccccccceeecc
Confidence 3444444444444444 333 4789999999999999999998853 3356666666665544332 246889
Q ss_pred CCCCceeEeeeecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEE
Q psy656 96 PSNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFK 175 (427)
Q Consensus 96 P~~P~~~v~~I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K 175 (427)
|++|++.|.+|.++++++|+|+. .|+.++|++.+.+ +.|.+|||
T Consensus 550 pldp~v~i~~Iip~t~~~FkSsl-~Pl~l~fkt~~g~-----------------------------------g~y~vIFK 593 (843)
T KOG0906|consen 550 PLDPDVLIKGIIPDTASLFKSSL-MPLKLTFKTDDGG-----------------------------------GKYPVIFK 593 (843)
T ss_pred CCCCCceEeeecCchhhhhhhcc-CceeEEEEecCCC-----------------------------------CceeEEEe
Confidence 99999999999999999999976 6999999975521 13899999
Q ss_pred eCCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCCh-
Q psy656 176 VGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETS- 254 (427)
Q Consensus 176 ~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~- 254 (427)
.||||||||+++|++++|+.+++++++||.++||+|+|||+..|++|+||+ .++..|..+.. ++..|+.+..++++.
T Consensus 594 ~GDDLrQDqlV~Qii~lMd~LLkkenlDLkLtpYkVLatg~~eG~vefI~s-~~la~Ils~~~-~I~~ylke~~p~e~ap 671 (843)
T KOG0906|consen 594 KGDDLRQDQLVLQIIRLMDRLLKKENLDLKLTPYKVLATGPKEGFVEFIPS-KPLARILSEYH-SILMYLKEDRPDENAP 671 (843)
T ss_pred cCcchhHHHHHHHHHHHHHHHhccccccccceeeEEeccCCCcccEEeecC-CcHHHHHHHHH-HHHHHHHhhCCCcCCC
Confidence 999999999999999999999999999999999999999999999999996 56666644332 377899888876532
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCc
Q psy656 255 -KEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKI 333 (427)
Q Consensus 255 -~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~ 333 (427)
..-.++++||++|||||||+||||||||||+||+|+++|||+||||||||||++|| |++||++|+++|+++|||.
T Consensus 672 ~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~dGk~FHiDFgyIlGRDPK---P~pp~MkL~kemve~mgg~- 747 (843)
T KOG0906|consen 672 FGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPK---PFPPPMKLAKEMVEGMGGA- 747 (843)
T ss_pred CCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEccCCcEEEEeeeeeccCCCC---CCCCccccCHHHHHHhccc-
Confidence 12347899999999999999999999999999999999999999999999999998 8999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCch---HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhch
Q psy656 334 EAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRG---QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNF 410 (427)
Q Consensus 334 ~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~---~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~ 410 (427)
++..|++|+..|..||++||+++++|++||++|++++||++.- ++|.++++||++++||++|.+||+++|++|+++.
T Consensus 748 es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~AL 827 (843)
T KOG0906|consen 748 ESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHFQKLINESVNAL 827 (843)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999973 5899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHc
Q psy656 411 RTRAYDYLQYYQN 423 (427)
Q Consensus 411 ~t~~yD~~Q~~~n 423 (427)
.+.+-|.++.|.+
T Consensus 828 ~~~v~d~ih~~aq 840 (843)
T KOG0906|consen 828 FPQVVDLIHRLAQ 840 (843)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887754
No 17
>KOG0904|consensus
Probab=100.00 E-value=3.9e-76 Score=624.06 Aligned_cols=356 Identities=27% Similarity=0.451 Sum_probs=307.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcccC-CCCCh-----HHHHHHHHHHhccCcCCCCcccC
Q psy656 23 KDPILYDTLDSLVQALVASFSGPAKAFYEREFEFFAQITDISGKIR-PFPKG-----AERKRACLEELSKIKVRPGCYLP 96 (427)
Q Consensus 23 ~d~~~~~~l~~~~~~i~~~~~~~~~~~~~~q~~f~~~l~~is~~lk-~~~~~-----~er~~~~~~~l~~i~~~~~~~lP 96 (427)
..|..+.++.-+++++++ .++.+.+.+.+|++.+++|++++..+| ..+|. .+.++.+++..+-.....++..|
T Consensus 691 ~~~~~~~RfgllLEaYlR-Gc~~hlk~l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~lq~l~sP 769 (1076)
T KOG0904|consen 691 AQPSVQQRFGLLLEAYLR-GCTHHLKVLTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEALQNLQSP 769 (1076)
T ss_pred ccHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHHHHhccCC
Confidence 345788999999999999 567789999999999999999999999 33332 23344555555545556678899
Q ss_pred CCCceeEeeeecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEe
Q psy656 97 SNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKV 176 (427)
Q Consensus 97 ~~P~~~v~~I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~ 176 (427)
+||.....++.++.|++|.||. .|+|+.|+..+.+ + . ....+|||+
T Consensus 770 LdP~~~lgel~iekckvM~Skk-rPLwl~~~Np~~~------------------s--------------~-~~v~iIFKN 815 (1076)
T KOG0904|consen 770 LDPSLKLGELIIEKCKVMDSKK-RPLWLVFENPDAG------------------S--------------N-LSVGIIFKN 815 (1076)
T ss_pred CChhhhhcchhhhhhhhhhccC-CceEEEecCCCcc------------------c--------------C-CceeEEEcC
Confidence 9999999999999999999976 5999999632211 0 0 025799999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccCC----------cchHHHHH
Q psy656 177 GDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTD----------IGMYEYFI 246 (427)
Q Consensus 177 gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~----------~~l~~~f~ 246 (427)
|||||||||++||+++|++||+.+|+|++|.||.|+|||...||||+|++|.|+.+|+..+. ..|.+|+.
T Consensus 816 GDDLRQDMLtLQmLriMd~iWk~~glDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~IQ~~~g~~~at~afn~~~L~~WLK 895 (1076)
T KOG0904|consen 816 GDDLRQDMLTLQMLRIMDNIWKTEGLDLRMLPYGCLSTGDRIGLIEVVRNSETIANIQLNTGNMAATAAFNKDALLNWLK 895 (1076)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCeeccccccccccceeeeEEEecCchhhhhhhhccccceeeccCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999975433 35888988
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCCCC---CCccccH
Q psy656 247 KTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFE---PDIKLTD 323 (427)
Q Consensus 247 ~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~---~PFrLT~ 323 (427)
.+++. ...+.+|.+.|+.|||||||+||||||||||+|||||.++|++||||||||||+.. .+++.. +||.||+
T Consensus 896 ekNp~--e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvke~GqlFHIDFGHiLGh~K-sKlGi~RERvPFvLT~ 972 (1076)
T KOG0904|consen 896 EKNPG--EDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVKETGQLFHIDFGHILGHFK-SKLGINRERVPFVLTY 972 (1076)
T ss_pred hcCch--HHHHHHHHHHHHHhhccceeeeeeecccccccCceEEeccCcEEEEEhhhhhccch-hhcCcccccCceEeec
Confidence 77643 35599999999999999999999999999999999999999999999999999964 455553 5999999
Q ss_pred HHHHHh--CCCcCCcc-hHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHH
Q psy656 324 EMVMVM--GGKIEAAP-FRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFM 399 (427)
Q Consensus 324 ~mv~~m--Gg~~~~~~-f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~ 399 (427)
+|+.+| |+.+.+.. |++|+++|++||++||+|.++|++||++|+.+|+|++++ ++|+++|+.+.++.||+||.+||
T Consensus 973 dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss~~Di~ylrdtL~l~ktEEeA~k~F 1052 (1076)
T KOG0904|consen 973 DFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSSKKDIDYLRDTLALGKTEEEALKYF 1052 (1076)
T ss_pred ceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccccHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999998 45545555 999999999999999999999999999999999999986 69999999999999999999999
Q ss_pred HHHHHHhhh-chhhhHHH
Q psy656 400 IGVIRNSFL-NFRTRAYD 416 (427)
Q Consensus 400 ~~lI~~s~~-~~~t~~yD 416 (427)
.+.+++|+. ||+|++.=
T Consensus 1053 ~~k~~eA~~~sWtTk~NW 1070 (1076)
T KOG0904|consen 1053 RDKFEEALRGSWTTKVNW 1070 (1076)
T ss_pred HHHHHHHHhcCceeeehh
Confidence 999999976 68887643
No 18
>KOG0905|consensus
Probab=100.00 E-value=1.6e-75 Score=630.24 Aligned_cols=363 Identities=28% Similarity=0.462 Sum_probs=320.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHhccCc----CCCCcccCC
Q psy656 23 KDPILYDTLDSLVQALVASFSGP-AKAFYEREFEFFAQITDISGKIRPFPKGAERKRACLEELSKIK----VRPGCYLPS 97 (427)
Q Consensus 23 ~d~~~~~~l~~~~~~i~~~~~~~-~~~~~~~q~~f~~~l~~is~~lk~~~~~~er~~~~~~~l~~i~----~~~~~~lP~ 97 (427)
+|-++.-++..++.+++.-- |+ -|+.+.+|-.+++.|.+|+..+|.. +++.|+..+...|..+. ..+.|+||+
T Consensus 970 ~d~qfs~rYq~ll~aLl~~~-gk~L~~ef~~Q~~Lv~~L~~iae~Vr~a-s~s~Rq~vL~~~l~~v~~ff~~n~tcrLPL 1047 (1639)
T KOG0905|consen 970 DDSQFSLRYQNLLAALLDCC-GKNLREEFKKQHKLVNELGSIAEDVRSA-SGSARQHVLRTGLGRVDSFFLQNNTCRLPL 1047 (1639)
T ss_pred ccceeehHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHhHHHHHHHHHhCCceeccc
Confidence 44556667777888887744 55 5999999999999999999999974 44678877777765542 345799999
Q ss_pred CCceeEeeeecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeC
Q psy656 98 NPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVG 177 (427)
Q Consensus 98 ~P~~~v~~I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~g 177 (427)
+|+..|+||.+++|.+|+|+|+ |+.++|...+ +.. ..+++|||.|
T Consensus 1048 ~Pal~vkGv~i~~CSyFnSNA~-PLKitFvnad----------------p~g------------------eni~iIfK~g 1092 (1639)
T KOG0905|consen 1048 CPALDVKGVRIRECSYFNSNAL-PLKITFVNAD----------------PLG------------------ENISIIFKCG 1092 (1639)
T ss_pred CchheeccccccccccccCCCc-ceEEEEecCC----------------Ccc------------------ccceeeeecC
Confidence 9999999999999999999995 9999998432 110 1378999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhcc-------CCcchHHHHHHHcC
Q psy656 178 DDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQ-------TDIGMYEYFIKTYG 250 (427)
Q Consensus 178 DDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~-------~~~~l~~~f~~~~~ 250 (427)
|||||||++||||++||+||.++|||++|.+|+|+|||.+.||+|.|||+.|+.+|..+ .+..+.+||.++.+
T Consensus 1093 DDLRQDml~lQmI~iMdkIWl~egLDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve~GltGsfkD~pla~WL~KhNp 1172 (1639)
T KOG0905|consen 1093 DDLRQDMLVLQMIRIMDKIWLQEGLDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVEEGLTGSFKDRPLAKWLMKHNP 1172 (1639)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeecccccccceeecccHHHHHHHHHHhccccccccchHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998654 45679999999975
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCC-CCCCC-CCCccccHHHHHH
Q psy656 251 DETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPG-GNLGF-EPDIKLTDEMVMV 328 (427)
Q Consensus 251 ~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~-~~~~~-~~PFrLT~~mv~~ 328 (427)
+ ..+|++|.+||++|||||||+||||||+||||||||++++||+||||||-++|...- |++.. .+||.||.+|..+
T Consensus 1173 ~--e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~~sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayv 1250 (1639)
T KOG0905|consen 1173 S--EFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYV 1250 (1639)
T ss_pred C--HHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEeccCcEEEEehhhhcchHHHhcccccccCCeEEeccchhh
Confidence 4 578999999999999999999999999999999999999999999999999988641 33333 3599999999987
Q ss_pred h-CCCcCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCch-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy656 329 M-GGKIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNS 406 (427)
Q Consensus 329 m-Gg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~-~~i~~l~~rf~l~~se~ea~~~~~~lI~~s 406 (427)
+ ||...+..|+.|+++||+||+++|||.+++++++.+|+.+|||++++ ++++++++.++++.||.||+.+|.++|++|
T Consensus 1251 INgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln~i~dLkYV~~aL~pq~td~eAT~~FTkmIqsS 1330 (1639)
T KOG0905|consen 1251 INGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELNSIQDLKYVYNALRPQDTDAEATVQFTKMIQSS 1330 (1639)
T ss_pred hcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCccchhhHHHHHhhcCcccCChhHHHHHHHHHHHH
Confidence 6 66667889999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred hhchhhhHHHHHHHHHcC
Q psy656 407 FLNFRTRAYDYLQYYQNQ 424 (427)
Q Consensus 407 ~~~~~t~~yD~~Q~~~n~ 424 (427)
++||.|++.--++.+.|.
T Consensus 1331 Lgs~~tklNffiHnLAQm 1348 (1639)
T KOG0905|consen 1331 LGSAFTKLNFFIHNLAQM 1348 (1639)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999998888877654
No 19
>KOG0903|consensus
Probab=100.00 E-value=1.2e-72 Score=592.50 Aligned_cols=258 Identities=43% Similarity=0.826 Sum_probs=247.0
Q ss_pred cccce--EEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhcc-CCcchH
Q psy656 166 METWQ--AAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQ-TDIGMY 242 (427)
Q Consensus 166 ~~~~~--~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~-~~~~l~ 242 (427)
.+.|. ++|+|+||||||+.++.|+|.-|..||.++|.+||++||+|+.||.+.||||.|+|+.|+|+|+++ +.....
T Consensus 582 ~pnWdL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~~l 661 (847)
T KOG0903|consen 582 LPNWDLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLASL 661 (847)
T ss_pred CCCcceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhhhH
Confidence 34454 799999999999999999999999999999999999999999999999999999999999999987 455556
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCCCCC-Cccc
Q psy656 243 EYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEP-DIKL 321 (427)
Q Consensus 243 ~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~~-PFrL 321 (427)
+||.+.++++++..|..|++||+.||||||++||+|||+||||||||||.+|||+||||||+|+.+| |+++||. ||||
T Consensus 662 ~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~EGHIIHIDFGFmLsnsP-gnvgFEsAPFKL 740 (847)
T KOG0903|consen 662 RHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEEGHIIHIDFGFMLSNSP-GNVGFESAPFKL 740 (847)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEecCCCCEEEEeeeeEecCCC-CCcccccCchhh
Confidence 7888889999999999999999999999999999999999999999999999999999999999999 5899996 9999
Q ss_pred cHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhh-CCCCCCch--HHHHHHHHHhCCCCCHHHHHHH
Q psy656 322 TDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLD-TGLPCFRG--QTIKLLRARFAPQATDKEAAAF 398 (427)
Q Consensus 322 T~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~-~~lp~~~~--~~i~~l~~rf~l~~se~ea~~~ 398 (427)
|.|++++|||. +++.|.+|+.+|.++|.++|||++.|+.|+++|.+ +++|||++ +++++|++||++++||+|...+
T Consensus 741 T~EylEvmgG~-~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~l 819 (847)
T KOG0903|consen 741 TTEYLEVMGGL-DSDMFDYFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDL 819 (847)
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccChHHHHHHHHHhcccccHHHHHHH
Confidence 99999999998 78999999999999999999999999999999996 99999986 7999999999999999999999
Q ss_pred HHHHHHHhhhchhhhHHHHHHHHHcCC
Q psy656 399 MIGVIRNSFLNFRTRAYDYLQYYQNQI 425 (427)
Q Consensus 399 ~~~lI~~s~~~~~t~~yD~~Q~~~n~i 425 (427)
+..||++|++||+|++||.|||+||||
T Consensus 820 V~~LI~kS~~S~~TrlYD~fQyitnGI 846 (847)
T KOG0903|consen 820 VLSLISKSLDSITTRLYDSFQYITNGI 846 (847)
T ss_pred HHHHHhhcccchhhhhhHHHHHHhccc
Confidence 999999999999999999999999998
No 20
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=1.8e-57 Score=438.11 Aligned_cols=225 Identities=23% Similarity=0.403 Sum_probs=202.0
Q ss_pred CCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHH
Q psy656 109 NSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQ 188 (427)
Q Consensus 109 ~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQ 188 (427)
+.++++.|+. .|..++|...+ + ..|.+|+|+|||||||++++|
T Consensus 6 ~~~~v~~s~~-~P~~i~~~~~d----------------------------------G--~~~~~l~K~~dDLRqD~ri~q 48 (237)
T cd00892 6 DEVEILNSLQ-KPKKITLIGSD----------------------------------G--NSYPFLCKPKDDLRKDARLME 48 (237)
T ss_pred CeEEEEeccC-CceEEEEEcCC----------------------------------C--CEEEEEEeCCCcccHHHHHHH
Confidence 3466788985 59999997321 1 248999999999999999999
Q ss_pred HHHHHHHHHHHc----CCCceecCceEEEecCCcceeeeeCCCchhhhhhcc-CCcchHHHHHHHcCCCChHHHHHHHHH
Q psy656 189 VISIFKNVFQQV----GLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQ-TDIGMYEYFIKTYGDETSKEFQNARRN 263 (427)
Q Consensus 189 li~lm~~i~~~~----~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~-~~~~l~~~f~~~~~~~~~~~~~~ar~n 263 (427)
++++||.+|++. +++++++||+|+|+++++||||||+++.|++++.+. .+..+.+||.+++++ +..|+++++|
T Consensus 49 l~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~~~GlIE~v~~~~sl~~i~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~ 126 (237)
T cd00892 49 FNTLINRLLSKDPESRRRRLYIRTYAVIPLNEECGIIEWVPNTATLRSILLEIYPPVFHEWFLENFPD--PSAWLKARNA 126 (237)
T ss_pred HHHHHHHHHHhCchhccCceeeEeceEEEcCCCCceEEECCCCccHHHHHHHhCCHHHHHHHHHHCcC--HHHHHHHHHH
Confidence 999999999887 899999999999999999999999999999998664 356789999999864 5789999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCceeEcc-CCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHH
Q psy656 264 FVRSMAAYSVIGFLLQIKDRHNGNIMLDK-AGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFM 342 (427)
Q Consensus 264 F~~S~A~ysv~tYiLgigDRH~~NIll~~-~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~ 342 (427)
|+.|||+||++||||||||||++||||++ +|+++|||||++|+.++...+|+.+|||||++|+++||+.+.+| .|+
T Consensus 127 F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g---~F~ 203 (237)
T cd00892 127 YTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVEG---LFR 203 (237)
T ss_pred HHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCCC---chH
Confidence 99999999999999999999999999998 99999999999999986555566679999999999999998776 566
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCc
Q psy656 343 ELCVQAFLAMRPYQESIISLVSLMLDTGLPCFR 375 (427)
Q Consensus 343 ~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~ 375 (427)
..|+.++.+||+|++.|++++++|+++++-+|.
T Consensus 204 ~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 204 KSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 799999999999999999999999999998885
No 21
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=1.7e-57 Score=437.77 Aligned_cols=222 Identities=22% Similarity=0.318 Sum_probs=198.8
Q ss_pred CCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHH
Q psy656 110 SGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQV 189 (427)
Q Consensus 110 ~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQl 189 (427)
..++++|+. .|.+++|...+ ...+.+|+|.|||||||+++||+
T Consensus 7 ~v~v~~S~~-~Pkri~~~~~d------------------------------------G~~~~fl~K~~dDlR~D~r~~Ql 49 (235)
T cd05172 7 RVLVLSSLR-KPKRITIRGSD------------------------------------EKEYPFLVKGGEDLRQDQRIQQL 49 (235)
T ss_pred ceEEeccCC-CCEEEEEECCC------------------------------------CCEEEEEEECCCcccHHHHHHHH
Confidence 467888976 69999997321 12489999999999999999999
Q ss_pred HHHHHHHHHH----cCCCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHH
Q psy656 190 ISIFKNVFQQ----VGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFV 265 (427)
Q Consensus 190 i~lm~~i~~~----~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~ 265 (427)
+++||.+|++ .+++++++||+|+|+++++|+||||+++.|++++.+. ..+.+||.+.+. ++..|+.+|+||+
T Consensus 50 ~~l~n~~l~~~~~~~~~~l~~~~y~vipls~~~GlIE~v~~~~sl~~i~~~--~~l~~~~~~~~~--~~~~~~~~r~~F~ 125 (235)
T cd05172 50 FGVMNNILAQDTACRQRALQLRTYQVIPMTPRFGLIEWLENTTPLKEILKN--DLLRRALVEMSA--SPEAFLSLRDHFA 125 (235)
T ss_pred HHHHHHHHHhChhhccCCceeecceEEEeCCCCceEEEcCCchhHHHHHhh--HHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 9999999986 4789999999999999999999999999999999875 568889988875 4678999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEcc-CCcEEEEecccccccCCC-CCCCCCCCccccHHHHHHhCCCcCCcchHHHHH
Q psy656 266 RSMAAYSVIGFLLQIKDRHNGNIMLDK-AGHIIHIDFGFMFESSPG-GNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFME 343 (427)
Q Consensus 266 ~S~A~ysv~tYiLgigDRH~~NIll~~-~G~l~HIDFG~if~~~p~-~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~ 343 (427)
+|||+||++||||||||||++||||++ +|+++|||||++|+.+++ ..+++.+|||||++|+++||+.+.+|. |+.
T Consensus 126 ~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~G~---f~~ 202 (235)
T cd05172 126 KSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKADGL---LRS 202 (235)
T ss_pred HHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCCCh---HHH
Confidence 999999999999999999999999996 999999999999999985 334555799999999999999988885 456
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhCCCCCCc
Q psy656 344 LCVQAFLAMRPYQESIISLVSLMLDTGLPCFR 375 (427)
Q Consensus 344 ~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~ 375 (427)
.|+.++.+||++++.|++++++++++++-+|+
T Consensus 203 ~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 203 CMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 99999999999999999999999999998875
No 22
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=1.9e-56 Score=426.35 Aligned_cols=215 Identities=36% Similarity=0.556 Sum_probs=195.5
Q ss_pred eecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHH
Q psy656 106 IDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDML 185 (427)
Q Consensus 106 I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l 185 (427)
+..+.++++.|+ ++|.+++|...+ ...+.+|+|.|||||||++
T Consensus 3 ~~~~~~~v~~s~-~~P~~l~~~~~d------------------------------------g~~~~~l~K~~ddlR~D~~ 45 (219)
T cd00142 3 IDVKICRIMPSK-TRPKKLTLIGAD------------------------------------GKEYRILFKNGDDLRQDER 45 (219)
T ss_pred ccCCceEEEccc-CCCEEEEEEccC------------------------------------CCEEEEEEeCCCchhHHHH
Confidence 455678899998 579999998422 1258999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHH
Q psy656 186 ALQVISIFKNVFQQV-GLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNF 264 (427)
Q Consensus 186 ~lQli~lm~~i~~~~-~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF 264 (427)
++|++++||.+|+++ +++++++||+|+|+++++|+||||+++.|++ ..+.+|+...+++ +..|+++++||
T Consensus 46 ~~ql~~~~n~il~~~~~~~l~~~~y~vipls~~~GlIE~v~~~~sl~-------~~l~~~~~~~~~~--~~~~~~~~~~F 116 (219)
T cd00142 46 VLQFIRLMNKILKKELGLDLFLTTYSVIPLSPRSGLIEVVPGSVTLE-------DDLSKWLKRKSPD--EDEWQEARENF 116 (219)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEeEEEEEecCCceEEEEeCCCchhH-------HHHHHHHHHHCcC--HHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999998 4688999999865 46899999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceeEcc-CCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHHH
Q psy656 265 VRSMAAYSVIGFLLQIKDRHNGNIMLDK-AGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFME 343 (427)
Q Consensus 265 ~~S~A~ysv~tYiLgigDRH~~NIll~~-~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~ 343 (427)
+.|+|+||++||+|||||||++||||++ +|+++|||||++|+.+|+...++.+|||||++|+++||+.+ .+..|+.
T Consensus 117 ~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~---~~g~F~~ 193 (219)
T cd00142 117 ISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGG---VFGPFRS 193 (219)
T ss_pred HHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcc---hhhhHHH
Confidence 9999999999999999999999999999 99999999999999999765656679999999999999974 5668888
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHhhC
Q psy656 344 LCVQAFLAMRPYQESIISLVSLMLDT 369 (427)
Q Consensus 344 ~c~~a~~~lR~~~~~ii~ll~lm~~~ 369 (427)
.|+++|.+||+|++.|++++++|+++
T Consensus 194 ~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 194 LCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred HHHHHHHHHHhChHHHHHHHHHhccC
Confidence 99999999999999999999999853
No 23
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=1.9e-56 Score=421.33 Aligned_cols=194 Identities=45% Similarity=0.757 Sum_probs=181.5
Q ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHHHHcC----CCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHH
Q psy656 171 AAIFKVGDDVRQDMLALQVISIFKNVFQQVG----LDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFI 246 (427)
Q Consensus 171 ~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~ 246 (427)
++|+|+|||||||++++|++++||.+|++.+ ++++++||+|+|+|+++|+||||+++.|++++ +.+||.
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i-------l~~~~~ 73 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI-------LYDWFK 73 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH-------HHHHHH
Confidence 3799999999999999999999999999987 99999999999999999999999999999998 899999
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCC-CCCCccccHHH
Q psy656 247 KTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLG-FEPDIKLTDEM 325 (427)
Q Consensus 247 ~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~-~~~PFrLT~~m 325 (427)
+++++ +..|+++++||++|||+||++||+|||||||++||||+++|+++|||||++|+.+|+...+ +.+|||||++|
T Consensus 74 ~~~~~--~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~ 151 (202)
T smart00146 74 KKFPD--PEDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEM 151 (202)
T ss_pred HHCcC--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEeCCCCEEEEechhhhCccccCCCCCCCCCeecCHHH
Confidence 99976 4579999999999999999999999999999999999999999999999999999876555 44699999999
Q ss_pred HHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCch
Q psy656 326 VMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRG 376 (427)
Q Consensus 326 v~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~ 376 (427)
+++||+. +.+..|+..|+.++.+||+|++.|++++++|+.+++|||..
T Consensus 152 ~~~lg~~---~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~ 199 (202)
T smart00146 152 VDVMGDS---GYFGLFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRS 199 (202)
T ss_pred HHHhCCC---cccchHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcC
Confidence 9999965 45668888999999999999999999999999999999974
No 24
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=7.4e-56 Score=525.03 Aligned_cols=288 Identities=34% Similarity=0.607 Sum_probs=258.3
Q ss_pred CCCceeEeeeecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEe
Q psy656 97 SNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKV 176 (427)
Q Consensus 97 ~~P~~~v~~I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~ 176 (427)
-+|.+.|..+.++- .+++|+..+|..++++..+. ..|++++|+
T Consensus 1761 ~k~~v~I~~f~p~~-~~~~~~~~~p~rl~~rgsdG------------------------------------~~y~~i~K~ 1803 (2105)
T COG5032 1761 DKPFVLIERFEPEV-SVVKSHLQRPRRLTIRGSDG------------------------------------KLYSFIVKG 1803 (2105)
T ss_pred CCCCceEEEecCce-eeeecccccceEEEEEecCC------------------------------------cEEEEEeec
Confidence 35888888888764 46777677899999985331 148999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCC----CceecCceEEEecCCcceeeeeCCCchhhhhhcc----------------
Q psy656 177 GDDVRQDMLALQVISIFKNVFQQVGL----DLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQ---------------- 236 (427)
Q Consensus 177 gDDLRqD~l~lQli~lm~~i~~~~~l----dl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~---------------- 236 (427)
|||||||+++||++++||++|++.+. +++++||+|+|||+++|+||||||+.|++.|.+.
T Consensus 1804 ~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~~~~ 1883 (2105)
T COG5032 1804 GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEKKLA 1883 (2105)
T ss_pred CccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCCChhHHhhhh
Confidence 99999999999999999999998766 9999999999999999999999999998876321
Q ss_pred ---------------------CCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CC
Q psy656 237 ---------------------TDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDK-AG 294 (427)
Q Consensus 237 ---------------------~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~-~G 294 (427)
.+..+++||.+.|++ +..|+.+|+||++|+|+|||+||+||+||||++|||||+ +|
T Consensus 1884 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~--~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG 1961 (2105)
T COG5032 1884 ARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPN--PEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSG 1961 (2105)
T ss_pred hhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCC
Confidence 124688899999966 578999999999999999999999999999999999999 99
Q ss_pred cEEEEecccccccCCCCCCCC-C-CCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhC---
Q psy656 295 HIIHIDFGFMFESSPGGNLGF-E-PDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDT--- 369 (427)
Q Consensus 295 ~l~HIDFG~if~~~p~~~~~~-~-~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~--- 369 (427)
|++|||||+||+..|| .+++ | +|||||++|+++||+.+.+|. |+++|+.+|.+||+|++.|++++++|+++
T Consensus 1962 ~viHiDFg~il~~~p~-~~~~pE~vPFrLT~~iv~~mg~~g~EG~---Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~ 2037 (2105)
T COG5032 1962 HVIHIDFGFILFNAPG-RFPFPEKVPFRLTRNIVEAMGVSGVEGS---FRELCETAFRALRKNADSLMNVLELFVRDPLI 2037 (2105)
T ss_pred cEEEehHHHHHhcCCC-CCCCcccCcHhhhHHHHHhcCccchhhH---HHHHHHHHHHHHhccHHHHHHHHHHHhcCcch
Confidence 9999999999999985 5666 3 699999999999999998875 66799999999999999999999999999
Q ss_pred ---CCCCCc---hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHcCCCC
Q psy656 370 ---GLPCFR---GQTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQNQIPC 427 (427)
Q Consensus 370 ---~lp~~~---~~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~~~t~~yD~~Q~~~n~i~~ 427 (427)
++||++ ..++.++.+||++.+++.++..++.-+|++|+.+..|.+||.+|..|++|+.
T Consensus 2038 ~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~yi~w 2101 (2105)
T COG5032 2038 EWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMYIGW 2101 (2105)
T ss_pred hhhcCccccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhcccc
Confidence 899998 4577888899999999999999999999999999999999999999999974
No 25
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=1e-55 Score=435.66 Aligned_cols=202 Identities=26% Similarity=0.432 Sum_probs=179.1
Q ss_pred ceEEEEEeCCchhhHHHHHHHHHHHHHHHHHc----CCCceecCceEEEecCCcceeeeeCCCchhhhhhccC-------
Q psy656 169 WQAAIFKVGDDVRQDMLALQVISIFKNVFQQV----GLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT------- 237 (427)
Q Consensus 169 ~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~----~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~------- 237 (427)
.|.+|+|+|||||||++++|++++||.+|++. ++++.++||+|+|+|+++||||||+++.|+.++.+..
T Consensus 29 ~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~~~GlIE~v~~~~sl~~i~~~~~~~~~~~ 108 (280)
T cd05169 29 EYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSPNVGLIGWVPGCDTLHSLIREYRKKRNIP 108 (280)
T ss_pred EEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCCCcceEEeCCCCchHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999886 4899999999999999999999999999998874310
Q ss_pred ------------------------------------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy656 238 ------------------------------------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIK 281 (427)
Q Consensus 238 ------------------------------------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgig 281 (427)
+..+.+||..++. ++..|..+|+||++|||+|||+|||||||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~--~~~~w~~~r~~F~~S~A~~Sv~~Yilglg 186 (280)
T cd05169 109 LNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKSP--SSEAWLERRTNFTRSLAVMSMVGYILGLG 186 (280)
T ss_pred hhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence 0124455555553 46789999999999999999999999999
Q ss_pred CCCCCceeEcc-CCcEEEEecccccccCCCC-CCCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHH
Q psy656 282 DRHNGNIMLDK-AGHIIHIDFGFMFESSPGG-NLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESI 359 (427)
Q Consensus 282 DRH~~NIll~~-~G~l~HIDFG~if~~~p~~-~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~i 359 (427)
|||++||||++ +|+++|||||++|+.+++. .+|+.+|||||++|+++||+.+.+| .|+..|+.++.+||+|++.|
T Consensus 187 DRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~~g~~G---~F~~~~~~~~~~Lr~~~~~l 263 (280)
T cd05169 187 DRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGVSGIEG---TFRTTCEDVMNVLRENKESL 263 (280)
T ss_pred CCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCCCCCCC---chHHHHHHHHHHHhcChHHH
Confidence 99999999998 9999999999999988753 4566679999999999999998887 45569999999999999999
Q ss_pred HHHHHHHhhCCCCCCc
Q psy656 360 ISLVSLMLDTGLPCFR 375 (427)
Q Consensus 360 i~ll~lm~~~~lp~~~ 375 (427)
++++++|+++++-+|+
T Consensus 264 ~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 264 MAVLEAFVHDPLLSWR 279 (280)
T ss_pred HHHHHHHHhCcccccc
Confidence 9999999999999885
No 26
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=5.5e-55 Score=417.17 Aligned_cols=211 Identities=24% Similarity=0.408 Sum_probs=189.6
Q ss_pred CCcccccCCCCCeeEEEEeeeccchhhhhHHhhhccCCCCcchhhhhhhhcccCcccccceEEEEEeCCchhhHHHHHHH
Q psy656 110 SGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQV 189 (427)
Q Consensus 110 ~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~lQl 189 (427)
..+++.|++ +|.+++|...+ + ..+.+|+|+|||||||+++||+
T Consensus 7 ~v~v~~S~~-~P~~i~~~~~d----------------------------------G--~~~~fl~K~~dDlR~D~rv~ql 49 (222)
T cd05164 7 AVRILGSKQ-KPKKITLTGSD----------------------------------G--KKYLFLVKGGEDLRQDQRIMQL 49 (222)
T ss_pred eeEEecccC-CCEEEEEECCC----------------------------------C--CEEEEEEeCCCcccHHHHHHHH
Confidence 356788876 59999987211 1 2489999999999999999999
Q ss_pred HHHHHHHHHHcC----CCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHH
Q psy656 190 ISIFKNVFQQVG----LDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFV 265 (427)
Q Consensus 190 i~lm~~i~~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~ 265 (427)
+++||.+|++++ ++++++||+|+|+|+++||||||+|+.|++. .+.+|+.+++++ +..|+.+|+||+
T Consensus 50 ~~~~n~il~~~~~~~~~~l~~~~y~vipls~~~GliE~v~~~~sl~~-------~l~~~~~~~~~~--~~~~~~~r~~F~ 120 (222)
T cd05164 50 FQFCNTLLAKDAECRRRKLTIRTYAVIPLNSRSGLIEWVEGTTTLKP-------VLKKWFWLQFPD--PEQWFAARKNYT 120 (222)
T ss_pred HHHHHHHHHhCchhccCceEeecceEEEcCCCCceEEEcCCcchHHH-------HHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 999999999876 9999999999999999999999999999984 478899998854 578999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEcc-CCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHHHH
Q psy656 266 RSMAAYSVIGFLLQIKDRHNGNIMLDK-AGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMEL 344 (427)
Q Consensus 266 ~S~A~ysv~tYiLgigDRH~~NIll~~-~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~ 344 (427)
.|+|+||++||+|||||||++||||++ +|+++|||||++|+.+++..+++.+|||||++|+++||+.+.+| .|...
T Consensus 121 ~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G---~f~~~ 197 (222)
T cd05164 121 RSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVEG---LFRKI 197 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcCC---hHHHH
Confidence 999999999999999999999999999 99999999999999987655666679999999999999988766 56679
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhhC
Q psy656 345 CVQAFLAMRPYQESIISLVSLMLDT 369 (427)
Q Consensus 345 c~~a~~~lR~~~~~ii~ll~lm~~~ 369 (427)
|+.++.+||+|++.|++++++|+++
T Consensus 198 ~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 198 CEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999853
No 27
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=1.1e-54 Score=428.04 Aligned_cols=202 Identities=24% Similarity=0.413 Sum_probs=181.8
Q ss_pred ceEEEEEeCCchhhHHHHHHHHHHHHHHHHHc----CCCceecCceEEEecCCcceeeeeCCCchhhhhhccC-------
Q psy656 169 WQAAIFKVGDDVRQDMLALQVISIFKNVFQQV----GLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT------- 237 (427)
Q Consensus 169 ~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~----~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~------- 237 (427)
.|.+|+|+|||||||+++||++++||++|++. ++++++++|.|+|+|+++||||||+|+.|++++.+..
T Consensus 29 ~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~~~GLIe~v~~~~tl~~i~~~~~~~~~~~ 108 (279)
T cd05171 29 KYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSPRAGILEWVDGTIPLGEYLVGATGAHERY 108 (279)
T ss_pred EEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCCCceEEEECCCChhHHHHHHHhhhccccc
Confidence 58999999999999999999999999999876 7999999999999999999999999999998763211
Q ss_pred ------------------------------------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy656 238 ------------------------------------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIK 281 (427)
Q Consensus 238 ------------------------------------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgig 281 (427)
.+.+.+||.++++ ++..|+.+|+||++|||+||++|||||||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~--~~~~~~~~r~~F~~S~A~~s~~~yilglg 186 (279)
T cd05171 109 RPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFL--DPQDWFERRLAYTRSVATSSIVGYILGLG 186 (279)
T ss_pred CccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1134667777775 46789999999999999999999999999
Q ss_pred CCCCCceeEcc-CCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHH
Q psy656 282 DRHNGNIMLDK-AGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESII 360 (427)
Q Consensus 282 DRH~~NIll~~-~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii 360 (427)
|||++||||++ +|+++|||||++|+++++..+|+.+|||||++|+++||+.|.+|. |...|+.++.+||++++.|+
T Consensus 187 DRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~~g~~g~---f~~~~~~~~~~Lr~~~~~l~ 263 (279)
T cd05171 187 DRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGITGVEGV---FRRCCEKTLEVLRDNKDAIL 263 (279)
T ss_pred CCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCCCCCcch---HHHHHHHHHHHHHcChHHHH
Confidence 99999999997 999999999999999876555566799999999999999988775 55699999999999999999
Q ss_pred HHHHHHhhCCCCCCc
Q psy656 361 SLVSLMLDTGLPCFR 375 (427)
Q Consensus 361 ~ll~lm~~~~lp~~~ 375 (427)
+++++|+++++-+|+
T Consensus 264 ~~l~~fv~dpl~~W~ 278 (279)
T cd05171 264 TILEVLLYDPLYSWT 278 (279)
T ss_pred HHHHHHHhCcccccc
Confidence 999999999998885
No 28
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=9.7e-52 Score=412.18 Aligned_cols=204 Identities=23% Similarity=0.345 Sum_probs=174.7
Q ss_pred ceEEEEEeCCchhhHHHHHHHHHHHHHHHHH----cCCCceecCceEEEecCCcceeeeeCCCchhhhhhcc--------
Q psy656 169 WQAAIFKVGDDVRQDMLALQVISIFKNVFQQ----VGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQ-------- 236 (427)
Q Consensus 169 ~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~----~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~-------- 236 (427)
.|.+|+|+|||||||+++||++++||.+|++ ..+++.++||.|+|+++++||||||+|+.|+.++.+.
T Consensus 29 ~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~~~GLIEwv~~~~tl~~i~~~~~~~~~~~ 108 (307)
T cd05170 29 KYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGPRSGLIQWVDGATPLFGLYKRWQQREAVL 108 (307)
T ss_pred EEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCCCcceEEEcCCChhHHHHHHHHHHhhhhh
Confidence 5899999999999999999999999999987 4679999999999999999999999999998766321
Q ss_pred -----------CC------c------------------------------chHHHHHH---Hc-----------CCCChH
Q psy656 237 -----------TD------I------------------------------GMYEYFIK---TY-----------GDETSK 255 (427)
Q Consensus 237 -----------~~------~------------------------------~l~~~f~~---~~-----------~~~~~~ 255 (427)
.. . .+.+.|.+ +. ..+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ 188 (307)
T cd05170 109 QAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVLRQVLDELMQETPKDLLARELWCSSTTSS 188 (307)
T ss_pred hhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHH
Confidence 00 0 00111110 00 124567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcC
Q psy656 256 EFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDK-AGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIE 334 (427)
Q Consensus 256 ~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~-~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~ 334 (427)
.|+.+|++|++|+|+||++||||||||||++||||++ +|+++|||||++|++++...+|+.+|||||++|+++||+.|.
T Consensus 189 ~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~~~~~l~~pE~VPFRLT~~~~~~lg~~g~ 268 (307)
T cd05170 189 EWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFEKGKSLRIPEKVPFRMTQNIETALGLTGV 268 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhcccCCCCCCCCCCeeeCHHHHHHhCCCCC
Confidence 8999999999999999999999999999999999996 999999999999998765445666799999999999999887
Q ss_pred CcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCc
Q psy656 335 AAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFR 375 (427)
Q Consensus 335 ~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~ 375 (427)
+| .|+..|+.++.+||++++.|++++++++++|+-+|+
T Consensus 269 ~G---~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 269 EG---VFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred ch---hHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 77 555699999999999999999999999999999885
No 29
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=5.6e-51 Score=390.30 Aligned_cols=204 Identities=34% Similarity=0.610 Sum_probs=164.4
Q ss_pred eEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccC------------
Q psy656 170 QAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT------------ 237 (427)
Q Consensus 170 ~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~------------ 237 (427)
|++|||+|||||||+++||++++||.+|++++...++++|.|+|+++++|+||||+++.|+.++.+..
T Consensus 2 y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~ 81 (235)
T PF00454_consen 2 YSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPS 81 (235)
T ss_dssp EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC--
T ss_pred ceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999998875321
Q ss_pred ----------------CcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEc-cCCcEEEEe
Q psy656 238 ----------------DIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLD-KAGHIIHID 300 (427)
Q Consensus 238 ----------------~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~-~~G~l~HID 300 (427)
...+.+||.+.+.+ +..|+++|++|++|+|+||+++|+||+||||++||||+ .+|+++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~hID 159 (235)
T PF00454_consen 82 RKYKAKLFEKQSSKVPKDGLRQYFLKSFPS--AEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELIHID 159 (235)
T ss_dssp ----------------TTHHHHHHHHHSCT--THHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEEE--
T ss_pred cccccccccccccccccchHHHHHHhcCCC--hhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceeeeEE
Confidence 24578899998854 57899999999999999999999999999999999995 599999999
Q ss_pred cccccccCCCCCCCCCCCccccHHHHHHhCC-CcCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCch
Q psy656 301 FGFMFESSPGGNLGFEPDIKLTDEMVMVMGG-KIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRG 376 (427)
Q Consensus 301 FG~if~~~p~~~~~~~~PFrLT~~mv~~mGg-~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~ 376 (427)
||++|+ .+....++.+|||||++|+++||| .+..+.+..|+..|+.++.++|+|.+.|++++++|+.+++++|+.
T Consensus 160 fg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~~ 235 (235)
T PF00454_consen 160 FGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWRK 235 (235)
T ss_dssp HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS-
T ss_pred eHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCCC
Confidence 999999 433445667799999999999966 224577889999999999999999999999999999999999963
No 30
>KOG0890|consensus
Probab=100.00 E-value=1.2e-46 Score=430.65 Aligned_cols=245 Identities=22% Similarity=0.387 Sum_probs=208.2
Q ss_pred ceEEEEEeCCchhhHHHHHHHHHHHHHHHHH----cCCCceecCceEEEecCCcceeeeeCCCchhhhh----h--c---
Q psy656 169 WQAAIFKVGDDVRQDMLALQVISIFKNVFQQ----VGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQL----G--R--- 235 (427)
Q Consensus 169 ~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~----~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i----~--~--- 235 (427)
.|.+|+|.-||||+|.+.|++-.++|.+|++ +.+.|+++||.|+|++..||+||||||+.++..| + +
T Consensus 2071 ~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~~ 2150 (2382)
T KOG0890|consen 2071 IYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGKW 2150 (2382)
T ss_pred EeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhcccc
Confidence 5899999999999999999999999999976 6789999999999999999999999999997654 1 0
Q ss_pred ------------------------------cCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy656 236 ------------------------------QTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHN 285 (427)
Q Consensus 236 ------------------------------~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~ 285 (427)
..++.+++||..+|++| ..|..+|.+|++|.|+|||+|||||+||||.
T Consensus 2151 ~~~~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP--~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHg 2228 (2382)
T KOG0890|consen 2151 MIKKQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEP--GSWFASRNNYARTTAVMSMVGYILGLGDRHG 2228 (2382)
T ss_pred chhhHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 02457899999999776 5699999999999999999999999999999
Q ss_pred CceeEcc-CCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy656 286 GNIMLDK-AGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISLVS 364 (427)
Q Consensus 286 ~NIll~~-~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~ 364 (427)
+|||+|. ||.++|+||.++|+++-...+|+.+|||||+|||++||+.|.+|.|++ .|+.++.++|+|.+.++++++
T Consensus 2229 ENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG~Frk---~cEiTLrLlR~n~e~LMSiL~ 2305 (2382)
T KOG0890|consen 2229 ENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRK---VCEITLRLLRKNRETLMSILE 2305 (2382)
T ss_pred cceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccchhHHH---HHHHHHHHHHhcchhHHHHHH
Confidence 9999997 999999999999999754455666799999999999999999997665 899999999999999999999
Q ss_pred HHhhCCCCCCch--------------HHHHHHHHHhCCCCC----HHHHHHHHHHHHHHhhhc-hhhhHHHHH
Q psy656 365 LMLDTGLPCFRG--------------QTIKLLRARFAPQAT----DKEAAAFMIGVIRNSFLN-FRTRAYDYL 418 (427)
Q Consensus 365 lm~~~~lp~~~~--------------~~i~~l~~rf~l~~s----e~ea~~~~~~lI~~s~~~-~~t~~yD~~ 418 (427)
.++++|+-+|+. ..+..+++|++--+. .-...-+...||++|.+- ....||=.|
T Consensus 2306 tF~~DPlvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATseenL~~MYIGW 2378 (2382)
T KOG0890|consen 2306 TFVYDPLVEWNRPSKGRSPKKINEDRLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSEENLSEMYIGW 2378 (2382)
T ss_pred HHHhCchhhccCcccCCCcCcccchHHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCHHHHHHHHhhh
Confidence 999999999952 124567778775221 112334567789999763 466666443
No 31
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=1.2e-45 Score=359.16 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=181.6
Q ss_pred ceEEEEE--eCCchhhHHHHHHHHHHHHHHHHH----cCCCceecCceEEEecCCcceeeeeCCCchhhhhhcc------
Q psy656 169 WQAAIFK--VGDDVRQDMLALQVISIFKNVFQQ----VGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQ------ 236 (427)
Q Consensus 169 ~~~~i~K--~gDDLRqD~l~lQli~lm~~i~~~----~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~------ 236 (427)
.|.+++| .++|+|+|++++|+++++|.+|++ .++++.+++|.|+|+++++|||||++++.|+.++.++
T Consensus 30 ~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPLs~~~gLie~~~~~~tl~~i~~~~~~~~~ 109 (253)
T cd05163 30 IYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPLSPQIRLVEDDPSYISLQEIYEDKLEIYN 109 (253)
T ss_pred EEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEcCCccceEEECCCCccHHHHHHHHHHHHH
Confidence 5899998 688999999999999999999964 5678999999999999999999999999998877531
Q ss_pred -------CCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CCcEEEEecccccccC
Q psy656 237 -------TDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDK-AGHIIHIDFGFMFESS 308 (427)
Q Consensus 237 -------~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~-~G~l~HIDFG~if~~~ 308 (427)
++..+.+||.+++.+ +..|+.+|++|++|+|++|+++||||+||||++||||+. +|+++|||||+.|+++
T Consensus 110 ~i~~~~~p~~~l~~~~~~~~~~--~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~ 187 (253)
T cd05163 110 EIQKDMVPDTILKNYILSTFPT--YQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNN 187 (253)
T ss_pred HHHHhcCCHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCC
Confidence 234689999999855 678999999999999999999999999999999999998 9999999999999886
Q ss_pred CCC-CCCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCc
Q psy656 309 PGG-NLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFR 375 (427)
Q Consensus 309 p~~-~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~ 375 (427)
... .+|+.+|||||++|+++||..|.+|.|+ ..|+.+..+||++.+.|++++++++.+++-+|.
T Consensus 188 ~~~~~~pE~VPFRLT~ni~~~~g~~g~eG~f~---~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 188 KPLFHNNEPVPFRLTPNIQHLIGPIGLEGILT---SSMMAIARCLTEPEFDLENALQLFIRDELIAWH 252 (253)
T ss_pred CcCCCCCCcCCcccCHHHHHHhCCcCcCCcHH---HHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhc
Confidence 432 3566679999999999999999999666 489999999999999999999999999998874
No 32
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=100.00 E-value=2e-43 Score=370.04 Aligned_cols=308 Identities=18% Similarity=0.280 Sum_probs=222.5
Q ss_pred cCcCCCCcccCCCCceeEeeeecCCCcccccCCCCCeeEEEEeeeccchhhhhHHhhhcc------CCCCc---------
Q psy656 86 KIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICE------RDDDE--------- 150 (427)
Q Consensus 86 ~i~~~~~~~lP~~P~~~v~~I~~~~~~~~~S~ak~P~~~~f~~~~~~~~~~~~~~~~~~~------~~~~~--------- 150 (427)
-|.++.|+-.|.+|.+++..|+....++|.|++..|-++.|.+-.. ...+|...+...+ -|..+
T Consensus 931 ~~~~~~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1374)
T PTZ00303 931 YIDLPHPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSA-AEHLERDTMTAANNFGAHTLPTGESHAERSGEG 1009 (1374)
T ss_pred ccCCCcccccCCCcceeEEeeeccCeEeccccccCcchhhccchhh-hhhhhhhcccccccccccccccccchhhhcccc
Confidence 4567778889999999999999999999999987899999975332 1122221111000 00000
Q ss_pred -chhh------------hhh--hhc---c-----cCcccccceEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCceec
Q psy656 151 -EHDH------------QLV--RAN---S-----KDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLF 207 (427)
Q Consensus 151 -~~~~------------~~~--~~~---~-----~~~~~~~~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~ 207 (427)
+.|- .|+ ... + --++.+..+.+|||.| ||||||+++|+|++||.||+++++||+|+
T Consensus 1010 ~~~~~~~~~~~~~~~~~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLT 1088 (1374)
T PTZ00303 1010 REKGTGAAKTYTSTKTSAPVTSPVTAVNGVSPESLHDSLPQECMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEML 1088 (1374)
T ss_pred cccccCCCccccccccccceeeeeeccCCcCccccccccchheeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 0000 000 000 0 0112233478999996 99999999999999999999999999999
Q ss_pred CceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q psy656 208 PYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGN 287 (427)
Q Consensus 208 ~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~N 287 (427)
||+|+|||++.|+||+|++. ++.++.. ..+.+||.. .. + .+++||++|||||||+|||||||||||||
T Consensus 1089 PYRVLATG~dsGLIEfVps~-tLAsI~~---~~Il~YLr~--~~--t----~~~~NFi~S~AGYsViTYILgIgDRHngN 1156 (1374)
T PTZ00303 1089 DYSVLPLSCDSGLIEKAEGR-ELSNLDN---MDIASYVLY--RG--T----RSCINFLASAKLFLLLNYIFSIGDRHKGN 1156 (1374)
T ss_pred ceEEEeccCCcccEEEecch-HHHHhhh---hHHHHHHHh--cC--c----HHHHHHHHHHHHHHHHHHHhccCcccCCc
Confidence 99999999999999999975 5666643 248888873 22 1 24689999999999999999999999999
Q ss_pred eeEccCCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCc----------------------------------
Q psy656 288 IMLDKAGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKI---------------------------------- 333 (427)
Q Consensus 288 Ill~~~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~---------------------------------- 333 (427)
|||+.+||+||||||||||..+-....-.+|.|+...|.+..++..
T Consensus 1157 ILId~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~q~~~~~~~~~~~~~~~~~~~~g~~s~~~~s~~~~~ 1236 (1374)
T PTZ00303 1157 VLIGTNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQCQQRQCSCFAGPSPAATSSRARGCASPPGSSGSGGC 1236 (1374)
T ss_pred eeEcCCCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHHHhhhcccccCCCCccccccccCCCCCCCCCCCCCc
Confidence 9999999999999999999865222233458999999987643311
Q ss_pred -------------CCcchHHHHHHHHHHHHHHhhchHHHHHHHHHHhhC-CCCCCchHHHH-HHHHHhCCCCCHHHHHHH
Q psy656 334 -------------EAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDT-GLPCFRGQTIK-LLRARFAPQATDKEAAAF 398 (427)
Q Consensus 334 -------------~~~~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~-~lp~~~~~~i~-~l~~rf~l~~se~ea~~~ 398 (427)
..+.-..|...+...|.-+|.++..+..|+.-.++- .+| .....+. .+---|.-+.+++-.+..
T Consensus 1237 ~~pa~p~~~~e~ss~~~~~~f~~~aa~wf~~vrp~a~i~~~l~~~~v~r~~~~-~~~~e~~~~~nt~f~r~as~~s~~~~ 1315 (1374)
T PTZ00303 1237 GSPASPTKAPEPSSAEIREAFFSSAAEWFVHVRPFAAVFYELWLYAVHRHTVP-YNDAEMLNMLNTLFDRHASQTSSASK 1315 (1374)
T ss_pred CCCCCcccCCCCcchHHHHHHHHHHhhHheeechHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 113345787788888999999999998888777653 444 4333333 333346667778888888
Q ss_pred HHHHHHHhhh
Q psy656 399 MIGVIRNSFL 408 (427)
Q Consensus 399 ~~~lI~~s~~ 408 (427)
|-.-+++|.+
T Consensus 1316 f~~~~k~s~~ 1325 (1374)
T PTZ00303 1316 FSTTMKESVN 1325 (1374)
T ss_pred HHHHHHHhcC
Confidence 8888888866
No 33
>KOG0892|consensus
Probab=100.00 E-value=2.4e-42 Score=397.18 Aligned_cols=206 Identities=27% Similarity=0.406 Sum_probs=183.2
Q ss_pred eEEEEE-eCCchhhHHHHHHHHHHHHHHHHH----cCCCceecCceEEEecCCcceeeeeCCCchhhhhhc---------
Q psy656 170 QAAIFK-VGDDVRQDMLALQVISIFKNVFQQ----VGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGR--------- 235 (427)
Q Consensus 170 ~~~i~K-~gDDLRqD~l~lQli~lm~~i~~~----~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~--------- 235 (427)
+.-++| ++||||||+.|.|+|.++|.+|.. .+++|.++||+|||+++..|+||||.||+++++.--
T Consensus 2472 ~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~tiplgeyLv~~~~gah~r 2551 (2806)
T KOG0892|consen 2472 YKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVESGGAHKR 2551 (2806)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCCeehhhhhcccCCccccc
Confidence 567999 899999999999999999999965 679999999999999999999999999999876411
Q ss_pred -----------------------------------cCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy656 236 -----------------------------------QTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQI 280 (427)
Q Consensus 236 -----------------------------------~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgi 280 (427)
...+.+..||.++|++ +..|+++|.+||+|.|+.||+|||||+
T Consensus 2552 y~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~d--P~~WFekrlaYTrsvA~sS~VGyILGL 2629 (2806)
T KOG0892|consen 2552 YRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPD--PADWFEKRLAYTRSVAASSMVGYILGL 2629 (2806)
T ss_pred cCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCC--HHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 0123456678899976 478999999999999999999999999
Q ss_pred CCCCCCceeEcc-CCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHH
Q psy656 281 KDRHNGNIMLDK-AGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESI 359 (427)
Q Consensus 281 gDRH~~NIll~~-~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~i 359 (427)
||||..|||||. +|++||||+|..|+.+.....|+.+|||||+++|++||-+|++|.|++ .|+++|.+||++.+.+
T Consensus 2630 GDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGveGvFrR---ccE~t~~vlR~~~~~l 2706 (2806)
T KOG0892|consen 2630 GDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRR---CCEFTLEVLRREKESL 2706 (2806)
T ss_pred cchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCchHHHHH---HHHHHHHHHHhhhHHH
Confidence 999999999998 999999999999999765555666799999999999999999997765 8999999999999999
Q ss_pred HHHHHHHhhCCCCCCchHHHH
Q psy656 360 ISLVSLMLDTGLPCFRGQTIK 380 (427)
Q Consensus 360 i~ll~lm~~~~lp~~~~~~i~ 380 (427)
++++++++++||-.|.-..++
T Consensus 2707 ltileVl~yDPLf~W~msplK 2727 (2806)
T KOG0892|consen 2707 LTILEVLLYDPLFSWLMSPLK 2727 (2806)
T ss_pred HHHHHHHHhcchHHHhhcHHH
Confidence 999999999999988643333
No 34
>KOG0891|consensus
Probab=99.93 E-value=5.3e-27 Score=275.92 Aligned_cols=205 Identities=27% Similarity=0.452 Sum_probs=172.4
Q ss_pred ceEEEEEeCCchhhHHHHHHHHHHHHHHHHH----cCCCceecCceEEEecCCcceeeeeCCCchhhhhhccC-------
Q psy656 169 WQAAIFKVGDDVRQDMLALQVISIFKNVFQQ----VGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQT------- 237 (427)
Q Consensus 169 ~~~~i~K~gDDLRqD~l~lQli~lm~~i~~~----~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~------- 237 (427)
.+.++.|+++|+|||+++||+|.+||.++.. ..+.+.+..|.|+|.+++.|+|+|||++.|++.+.+..
T Consensus 1987 d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~ 2066 (2341)
T KOG0891|consen 1987 DYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIP 2066 (2341)
T ss_pred hHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhhccC
Confidence 4788999999999999999999999999965 35789999999999999999999999999988664310
Q ss_pred -------------Cc---------chHHHHH-----------HHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy656 238 -------------DI---------GMYEYFI-----------KTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRH 284 (427)
Q Consensus 238 -------------~~---------~l~~~f~-----------~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH 284 (427)
+. ...+|-. -.-..++++.|...|.||++|.|++|+++|++|+||||
T Consensus 2067 l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrh 2146 (2341)
T KOG0891|consen 2067 LNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRH 2146 (2341)
T ss_pred CcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccc
Confidence 00 0111100 01134567899999999999999999999999999999
Q ss_pred CCceeEcc-CCcEEEEecccccccCCCCC-CCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHhhchHHHHHH
Q psy656 285 NGNIMLDK-AGHIIHIDFGFMFESSPGGN-LGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISL 362 (427)
Q Consensus 285 ~~NIll~~-~G~l~HIDFG~if~~~p~~~-~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR~~~~~ii~l 362 (427)
+.|.|+++ +|.++|||||.+|+..+-.- +|+..|||||+.++++|-..|..|.|+. .|...+.++|.+.+.+++.
T Consensus 2147 psNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~~---t~e~v~~~lr~~~~sl~a~ 2223 (2341)
T KOG0891|consen 2147 PSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYRI---TCEHVMRVLRTNKESLMAV 2223 (2341)
T ss_pred hhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHHH---HHHHHHHhhcCChHHHHHH
Confidence 99999999 99999999999999876432 3444599999999999988877776665 8999999999999999999
Q ss_pred HHHHhhCCCCCCch
Q psy656 363 VSLMLDTGLPCFRG 376 (427)
Q Consensus 363 l~lm~~~~lp~~~~ 376 (427)
++.++.+++-.|+.
T Consensus 2224 leafvydplinwr~ 2237 (2341)
T KOG0891|consen 2224 LEAFVYDPLINWRL 2237 (2341)
T ss_pred HHhhhcccchhhhc
Confidence 99999999988864
No 35
>KOG0889|consensus
Probab=98.93 E-value=3.8e-09 Score=127.44 Aligned_cols=168 Identities=18% Similarity=0.256 Sum_probs=140.9
Q ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHHHH----cCCCceecCceEEEecCCcceeeeeCCCchhhhhhcc----------
Q psy656 171 AAIFKVGDDVRQDMLALQVISIFKNVFQQ----VGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQ---------- 236 (427)
Q Consensus 171 ~~i~K~gDDLRqD~l~lQli~lm~~i~~~----~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~---------- 236 (427)
.+-.|+-=+-|.+.+++|+++++|.++.+ .++.+.+.+..++|.++...++|..|++.|+++|.+.
T Consensus 3227 ~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D 3306 (3550)
T KOG0889|consen 3227 AVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPD 3306 (3550)
T ss_pred eeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcc
Confidence 45567667889999999999999999965 5678889999999999999999999999999877421
Q ss_pred ---------------------------------------CCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy656 237 ---------------------------------------TDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFL 277 (427)
Q Consensus 237 ---------------------------------------~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYi 277 (427)
+...+++||.+.|++ ...++..|+.|+.++|..++++|.
T Consensus 3307 ~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~--~~d~w~frk~f~~qla~~~~~~~~ 3384 (3550)
T KOG0889|consen 3307 DPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTN--YSDFWTFRKQFTDQLAVFSFMEYM 3384 (3550)
T ss_pred hhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCC--hhhhhhhHhHHHHHHHHHHHHHHH
Confidence 123578899999976 467899999999999999999999
Q ss_pred hccCCCCCCceeEcc-CCcEEEEeccccc-ccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHH
Q psy656 278 LQIKDRHNGNIMLDK-AGHIIHIDFGFMF-ESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRW 340 (427)
Q Consensus 278 LgigDRH~~NIll~~-~G~l~HIDFG~if-~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~ 340 (427)
+.++-|-++-+++++ +|.++--||-+-. +..|--....++|||||+++....|-.+.+|....
T Consensus 3385 lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~ 3449 (3550)
T KOG0889|consen 3385 LNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAG 3449 (3550)
T ss_pred HhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHH
Confidence 999999999999998 8999999998755 44443333456799999999999987777775554
No 36
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=93.91 E-value=0.5 Score=48.69 Aligned_cols=227 Identities=16% Similarity=0.158 Sum_probs=136.8
Q ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHcC
Q psy656 171 AAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTYG 250 (427)
Q Consensus 171 ~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~ 250 (427)
.+++|. -+++-|.....++..+|.-... -.+.+.+.+|+.-+.+.|..|+|++...-.
T Consensus 72 kivYKP-Rsl~~d~~f~~l~~~ln~~~~~--~~~~l~~~~~l~~g~~YgW~EfI~~~~c~~------------------- 129 (370)
T PF13575_consen 72 KIVYKP-RSLSIDKAFNDLLEWLNEKNGT--PSLDLPTPKVLDRGDGYGWQEFIEHEPCNS------------------- 129 (370)
T ss_pred EEEEeC-cccHHHHHHHHHHHHHhhhccc--cccccccceeeeccCcceeEEEecCCCCCC-------------------
Confidence 689997 6799999999888887765221 235677789999988899999998632210
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCCC---CCCCC--------C---
Q psy656 251 DETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPG---GNLGF--------E--- 316 (427)
Q Consensus 251 ~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~---~~~~~--------~--- 316 (427)
.+...+|-+-+.+...+.|+||..|=|.+||.-+. +.-+=||+--+|...+. ..... .
T Consensus 130 -------~~ev~~yY~r~G~llal~y~L~~~DlH~ENIIa~g-~~PvlIDlETlf~~~~~~~~~~~~~~~~~~l~~SV~~ 201 (370)
T PF13575_consen 130 -------EEEVERYYYRLGVLLALLYLLNGTDLHFENIIASG-EYPVLIDLETLFHPVIRLDDDGSTADASAKLRDSVLS 201 (370)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeC-CCcEEEehhhhCCccccCCCcccchhhHHhhhcchhh
Confidence 12345666677888999999999999999998844 45777888777754210 00000 0
Q ss_pred ---CCcc-------------------------------ccHHHHHH----h----CCCc-C-CcchHHHHHHHHHHHHHH
Q psy656 317 ---PDIK-------------------------------LTDEMVMV----M----GGKI-E-AAPFRWFMELCVQAFLAM 352 (427)
Q Consensus 317 ---~PFr-------------------------------LT~~mv~~----m----Gg~~-~-~~~f~~F~~~c~~a~~~l 352 (427)
-|.. -|.+|+.. + +|.. . ..-...+.+=+..+|..+
T Consensus 202 tglLP~~~~~~~~~~d~s~l~~~~~~~~~~~~~~~~~~~td~m~~~~~~~~~~~~~~~~~~~~~y~~~i~~GF~~~y~~i 281 (370)
T PF13575_consen 202 TGLLPSWIWGDKDGIDVSGLGGGEGQKIPFKVPVIKNDGTDEMIEYEEVRIEPKNNGKRIDPEDYIDDIIEGFREAYRFI 281 (370)
T ss_pred eeecCchhccCCCCcccccccCCCCCcCCcceeecccCCCceeeeccccccccccCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 0111 12222110 0 0000 0 011234555566778899
Q ss_pred hhchHHHHHHHHHHh-hCCCCCCch---HHHHHHHHHhCCC-CCHH-HHHHHHHHHH---HHhhhchhhhHHHHHHHHHc
Q psy656 353 RPYQESIISLVSLML-DTGLPCFRG---QTIKLLRARFAPQ-ATDK-EAAAFMIGVI---RNSFLNFRTRAYDYLQYYQN 423 (427)
Q Consensus 353 R~~~~~ii~ll~lm~-~~~lp~~~~---~~i~~l~~rf~l~-~se~-ea~~~~~~lI---~~s~~~~~t~~yD~~Q~~~n 423 (427)
.+|.+.++..+.... ....-.+-. .--+.|+...+|+ +.+. +....+.++. .....++.=..+..-|-++.
T Consensus 282 ~~~k~~l~~~~~~~f~~~~~R~i~R~T~~Y~~lL~~s~hP~~l~~~~~~~~~l~~l~~~~~~~~~~~~i~~~E~~~L~~~ 361 (370)
T PF13575_consen 282 LKNKEELLEILLEAFSNLKVRVILRPTQVYAQLLRASTHPDYLRDGLDRERLLERLWRAYFSPPKNKKIVESEIAQLLNG 361 (370)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHHhcCchhhhChHHHHHHHHHHHhhcccccchhHHHHHHHHHHHcC
Confidence 999999988776632 111111111 2345677788888 5443 3344555553 33333445555667777788
Q ss_pred CCCC
Q psy656 424 QIPC 427 (427)
Q Consensus 424 ~i~~ 427 (427)
-|||
T Consensus 362 DIP~ 365 (370)
T PF13575_consen 362 DIPY 365 (370)
T ss_pred CCCe
Confidence 8886
No 37
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=89.28 E-value=0.32 Score=47.51 Aligned_cols=110 Identities=18% Similarity=0.262 Sum_probs=67.3
Q ss_pred HcCCCceecCceEEEecC-Ccceee-eeCCCchhhhhhccCCc-chHHHHH--HHcCCCChHHHHHHHHHHHHHHHHHHH
Q psy656 199 QVGLDLYLFPYRVVATSP-GCGVIE-CVPDAKSRDQLGRQTDI-GMYEYFI--KTYGDETSKEFQNARRNFVRSMAAYSV 273 (427)
Q Consensus 199 ~~~ldl~l~~Y~Vip~~~-~~GlIE-~V~~~~sl~~i~~~~~~-~l~~~f~--~~~~~~~~~~~~~ar~nF~~S~A~ysv 273 (427)
++-+...+.|+.|+--|+ +.|++| ||.+..+.+-+.-.... .--.|+. ... ++.... -......-..+.-.+|
T Consensus 63 s~~lGw~~VPpTvlrDGP~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~-d~~g~~-v~l~h~d~~~l~riaV 140 (253)
T TIGR03843 63 SEALGWGLVPPTVLRDGPFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAE-DEEGEP-VVLVHADHPQLRRMAV 140 (253)
T ss_pred HHHhCCCcCCCeeeecCCCCCceEEEeccCCCccchhhcccccccCCccccccccc-cccCcc-eeecccccHHHhhhhh
Confidence 344677889999997655 478888 88875442211100000 0001110 000 000000 0001122234667889
Q ss_pred HHHhhccCCCCCCceeEccCCcEEEEecccccccCCC
Q psy656 274 IGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPG 310 (427)
Q Consensus 274 ~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~ 310 (427)
+=+++.=-|||.+|||..++|+++-||=|++|...++
T Consensus 141 fDi~inNaDRk~GhiL~~~dg~l~~IDHGl~f~~~~k 177 (253)
T TIGR03843 141 FDALVNNADRKGGHVLPGPDGRVWGVDHGVCFHVEPK 177 (253)
T ss_pred heeeeecCCCCCCcEeEcCCCcEEEecCceecCCCCc
Confidence 9999999999999999999999999999999988765
No 38
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=84.52 E-value=0.63 Score=50.40 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=49.8
Q ss_pred CCceecCceEEE--ecCCcceeeeeCCCchhhh--hhccCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy656 202 LDLYLFPYRVVA--TSPGCGVIECVPDAKSRDQ--LGRQTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFL 277 (427)
Q Consensus 202 ldl~l~~Y~Vip--~~~~~GlIE~V~~~~sl~~--i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYi 277 (427)
-+-.+...+|.+ ++++.=..|||++..--+. +..+.-. . ...-+++++++--. +...=
T Consensus 224 ~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d-~----------------k~ia~~~~~~f~~q-~~~dg 285 (517)
T COG0661 224 DDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGID-R----------------KELAELLVRAFLRQ-LLRDG 285 (517)
T ss_pred CCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCC-H----------------HHHHHHHHHHHHHH-HHhcC
Confidence 355667788885 6888888999998653322 3221111 0 00001111111100 11111
Q ss_pred hccCCCCCCceeEccCCcEEEEeccccc
Q psy656 278 LQIKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 278 LgigDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+==+|=|+|||+++.+|+++-+|||.+=
T Consensus 286 ffHaDpHpGNi~v~~~g~i~~lDfGi~g 313 (517)
T COG0661 286 FFHADPHPGNILVRSDGRIVLLDFGIVG 313 (517)
T ss_pred ccccCCCccceEEecCCcEEEEcCccee
Confidence 1227999999999999999999999874
No 39
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=82.54 E-value=6.6 Score=44.67 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=80.0
Q ss_pred eEEEEEeCCchhhHHHHHHHHHHHHHHHHHcCCCceecCceEEEecCCcceeeeeCCCchhhhhhccCCcchHHHHHHHc
Q psy656 170 QAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIKTY 249 (427)
Q Consensus 170 ~~~i~K~gDDLRqD~l~lQli~lm~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~ 249 (427)
..+++|. -+|+-|+...+++..+|.-. ....+++++|+.-+ +.|..|+|+...-..
T Consensus 114 ~kivYKP-r~l~~d~~f~~~l~~ln~~~----~~~~~~~~~~l~~~-~ygw~EfI~~~~c~~------------------ 169 (825)
T cd04792 114 LKLVYKP-RSLSVDALFQELLEWLNSFL----GALPLRTPKVLDRG-DYGWEEFIEHQPCQS------------------ 169 (825)
T ss_pred CEEEECC-CCchHHHHHHHHHHHHHhcC----CccccccceeeecC-CcceEEeecCCCCCC------------------
Confidence 3689997 67999999999988887642 22334778888765 569999998621110
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccC
Q psy656 250 GDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESS 308 (427)
Q Consensus 250 ~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~ 308 (427)
.+..++|=+-+..+..+.|+||.-|=|.+|| |..-.+-+=||+--+|...
T Consensus 170 --------~~e~~~fY~r~G~llal~y~L~~tD~H~ENi-IA~g~~PvlIDlETlf~~~ 219 (825)
T cd04792 170 --------KEEVERYYYRLGGLLALLYLLNATDLHFENI-IASGEYPVLIDLETLFHPR 219 (825)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHcCCcccchhhh-eeeCCCceEEeeHHhcCCC
Confidence 1334567777889999999999999999999 7777888999997777553
No 40
>KOG0616|consensus
Probab=75.79 E-value=1.9 Score=43.71 Aligned_cols=25 Identities=44% Similarity=0.752 Sum_probs=23.1
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
.|--++|||||++||+==+||||.=
T Consensus 168 RDLKPENiLlD~~G~iKitDFGFAK 192 (355)
T KOG0616|consen 168 RDLKPENLLLDQNGHIKITDFGFAK 192 (355)
T ss_pred ccCChHHeeeccCCcEEEEeccceE
Confidence 5888999999999999999999974
No 41
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=75.58 E-value=1.6 Score=47.46 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=23.2
Q ss_pred CCCCCCceeEccCC----cEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAG----HIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G----~l~HIDFG~if 305 (427)
+|=|++||+++.+| +++=+|||.+-
T Consensus 284 aDpHPGNIlv~~~g~~~~~i~llDFGivg 312 (537)
T PRK04750 284 ADMHPGNIFVSYDPPENPRYIALDFGIVG 312 (537)
T ss_pred CCCChHHeEEecCCCCCCeEEEEecceEE
Confidence 89999999999988 99999999874
No 42
>KOG0608|consensus
Probab=75.29 E-value=2.7 Score=46.54 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhccCCCCCCceeEccCCcEEEEeccccc
Q psy656 267 SMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 267 S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if 305 (427)
.||.=||---=+==.|=-+||||||++|||=-.|||.+=
T Consensus 739 tcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCT 777 (1034)
T KOG0608|consen 739 TCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT 777 (1034)
T ss_pred HHHHHHHHhccceecccCccceEEccCCceeeeeccccc
Confidence 444444422222224777999999999999999999884
No 43
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=70.76 E-value=3.2 Score=43.89 Aligned_cols=25 Identities=48% Similarity=0.757 Sum_probs=23.2
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=|++|||++.+|++.=||||.+=
T Consensus 281 ~D~hPgNilv~~~g~i~liDfG~~~ 305 (437)
T TIGR01982 281 ADLHPGNIFVLKDGKIIALDFGIVG 305 (437)
T ss_pred CCCCcccEEECCCCcEEEEeCCCee
Confidence 6999999999999999999999873
No 44
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=70.61 E-value=7.3 Score=35.42 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.9
Q ss_pred Hhhcc--CCCCCCceeEccCCcEEEEecccc
Q psy656 276 FLLQI--KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 276 YiLgi--gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
.-.|+ ||=|++|||++ +|++.-||||..
T Consensus 107 H~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a 136 (199)
T TIGR03724 107 HKAGIVHGDLTTSNIIVR-DDKLYLIDFGLG 136 (199)
T ss_pred HHCCeecCCCCcceEEEE-CCcEEEEECCCC
Confidence 34555 89999999999 899999999864
No 45
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=69.29 E-value=3.9 Score=35.92 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.1
Q ss_pred hccCCCCCCceeEccCCcEEEEeccccc
Q psy656 278 LQIKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 278 LgigDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+-=||=|.+|||++ +|++.-||||..-
T Consensus 109 ~~HgD~~~~Nil~~-~~~~~liDf~~a~ 135 (170)
T cd05151 109 PCHNDLLPGNFLLD-DGRLWLIDWEYAG 135 (170)
T ss_pred eecCCCCcCcEEEE-CCeEEEEeccccc
Confidence 34499999999999 7889999999864
No 46
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=66.89 E-value=4 Score=37.50 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=|++|||++ +|++.=||||..-
T Consensus 142 rDlkP~NIll~-~~~~~liDFG~a~ 165 (190)
T cd05145 142 GDLSEYNILYH-DGKPYIIDVSQAV 165 (190)
T ss_pred CCCChhhEEEE-CCCEEEEEcccce
Confidence 79999999999 8999999999874
No 47
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=66.45 E-value=3.8 Score=39.87 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.3
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
||=|++|||++.+| +.=||||..
T Consensus 159 ~Dikp~Nili~~~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSKNG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeCCC-EEEEECCCc
Confidence 79999999999999 999999865
No 48
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=64.98 E-value=21 Score=33.41 Aligned_cols=70 Identities=24% Similarity=0.255 Sum_probs=46.9
Q ss_pred eeeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCC---
Q psy656 220 VIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQI--KDRHNGNIMLDKAG--- 294 (427)
Q Consensus 220 lIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgi--gDRH~~NIll~~~G--- 294 (427)
+.|.++++.++.++.... .. .+ ...++.+++.+|.+-.--+-.|| ||=|..|||++.++
T Consensus 95 ite~l~~~~~L~~~~~~~-----------~~-~~----~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~ 158 (206)
T PF06293_consen 95 ITEALPGAQDLRDLLQQW-----------EQ-LD----PSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQY 158 (206)
T ss_pred EEEeCCCcccHHHHHHhh-----------cc-cc----hhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCce
Confidence 457888887777654321 00 00 12345666666666655566665 89999999999987
Q ss_pred cEEEEeccccc
Q psy656 295 HIIHIDFGFMF 305 (427)
Q Consensus 295 ~l~HIDFG~if 305 (427)
++.=|||+-+-
T Consensus 159 ~~~lIDld~~~ 169 (206)
T PF06293_consen 159 RFYLIDLDRMR 169 (206)
T ss_pred eEEEEcchhce
Confidence 99999997653
No 49
>PRK14879 serine/threonine protein kinase; Provisional
Probab=63.00 E-value=16 Score=33.47 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.6
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=|++|||++ +|.+.=||||..-
T Consensus 119 ~Dl~p~Nil~~-~~~~~liDf~~a~ 142 (211)
T PRK14879 119 GDLTTSNMILS-GGKIYLIDFGLAE 142 (211)
T ss_pred CCCCcccEEEE-CCCEEEEECCccc
Confidence 89999999999 8999999999653
No 50
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=62.40 E-value=4.7 Score=37.39 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.2
Q ss_pred cc--CCCCCCceeEccCCcEEEEeccccc
Q psy656 279 QI--KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 279 gi--gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
|| ||=|++|||++ +|++.=||||..-
T Consensus 138 giiHrDlkP~NIli~-~~~v~LiDFG~a~ 165 (190)
T cd05147 138 RLVHADLSEYNLLYH-DGKLYIIDVSQSV 165 (190)
T ss_pred CcccCCCCHHHEEEE-CCcEEEEEccccc
Confidence 56 89999999998 6899999999865
No 51
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=58.49 E-value=22 Score=33.48 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
+|=+++||+++.+|.+.-+|||....
T Consensus 124 ~dlkp~Nill~~~~~~kl~dfg~~~~ 149 (269)
T cd05042 124 SDLALRNCQLTADLSVKIGDYGLALE 149 (269)
T ss_pred ccccHhheEecCCCcEEEeccccccc
Confidence 78899999999999999999998654
No 52
>KOG0612|consensus
Probab=58.25 E-value=16 Score=43.17 Aligned_cols=52 Identities=27% Similarity=0.440 Sum_probs=41.0
Q ss_pred CCCCCCceeEccCCcEEEEecccccccCCCCCCCC--C--CCccccHHHHHHhCCC
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGF--E--PDIKLTDEMVMVMGGK 332 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~--~--~PFrLT~~mv~~mGg~ 332 (427)
.|=-+||||||..|||=-.|||-++--+.-|.+-- . .|==++||++..||+.
T Consensus 199 RDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~ 254 (1317)
T KOG0612|consen 199 RDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDG 254 (1317)
T ss_pred ccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCC
Confidence 57789999999999999999999985543343322 1 2778999999999875
No 53
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=57.08 E-value=10 Score=34.72 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCCCCCceeEccCCcEEEEeccccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~~ 307 (427)
||=|++||+++.+|++.=||||.....
T Consensus 149 ~Dl~p~Nill~~~~~~~liDfg~~~~~ 175 (198)
T cd05144 149 GDLSEFNILVDDDEKIYIIDWPQMVST 175 (198)
T ss_pred CCCCcccEEEcCCCcEEEEECCccccC
Confidence 588999999999999999999988654
No 54
>KOG0598|consensus
Probab=51.70 E-value=7.7 Score=40.00 Aligned_cols=34 Identities=38% Similarity=0.639 Sum_probs=26.8
Q ss_pred HHHHHhhcc----CCCCCCceeEccCCcEEEEeccccc
Q psy656 272 SVIGFLLQI----KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 272 sv~tYiLgi----gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+.+.|+=.. +|=-++|||||.+||+.=.|||.+=
T Consensus 136 lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 136 LALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCK 173 (357)
T ss_pred HHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccch
Confidence 444555333 5888999999999999999999863
No 55
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=51.52 E-value=27 Score=31.77 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=35.6
Q ss_pred hccCCCCCCceeEccCCcEEEEecccccccCCCC--CCCCCCCccccHHHHHHh
Q psy656 278 LQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGG--NLGFEPDIKLTDEMVMVM 329 (427)
Q Consensus 278 LgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~--~~~~~~PFrLT~~mv~~m 329 (427)
+--||-+++||+++.+|.+.=+|||......+.. ......+.-+.||++...
T Consensus 119 i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~ 172 (253)
T cd05122 119 IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGK 172 (253)
T ss_pred EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcCC
Confidence 4568999999999999999999999876554421 011112344677776543
No 56
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=51.34 E-value=12 Score=36.76 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=28.5
Q ss_pred HHHhhccCCCCCCceeEccC----CcEEEEeccccccc
Q psy656 274 IGFLLQIKDRHNGNIMLDKA----GHIIHIDFGFMFES 307 (427)
Q Consensus 274 ~tYiLgigDRH~~NIll~~~----G~l~HIDFG~if~~ 307 (427)
...++-=||=|.+|||++.+ |.+.-|||.+.--.
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~ 214 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYN 214 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCC
Confidence 45677889999999999985 99999999887433
No 57
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=50.14 E-value=34 Score=33.28 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=24.2
Q ss_pred HhhccCCCCCCceeEccCCcEEEEeccccc
Q psy656 276 FLLQIKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 276 YiLgigDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+.+-=||=|++|||++.++-+--|||+++-
T Consensus 175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~ 204 (296)
T cd05153 175 RGVIHADLFRDNVLFDGDELSGVIDFYFAC 204 (296)
T ss_pred CcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence 344459999999999987766799998763
No 58
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=49.66 E-value=54 Score=31.78 Aligned_cols=104 Identities=16% Similarity=0.258 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeEcc---CCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHH
Q psy656 266 RSMAAYSVIGFLLQIKDRHNGNIMLDK---AGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFM 342 (427)
Q Consensus 266 ~S~A~ysv~tYiLgigDRH~~NIll~~---~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~ 342 (427)
--+.-++|.=|++|=+|||--|.. .. .|-++|+|=|--||+.....+. ++-+. .+--.|+
T Consensus 90 ldliDm~IFDFLigN~DRhhye~f-~~fgn~~~l~~LDNgrgFG~~~~de~s-------------IlaPL---~QcC~iR 152 (221)
T PF06702_consen 90 LDLIDMAIFDFLIGNMDRHHYETF-NKFGNEGFLLHLDNGRGFGRPSHDELS-------------ILAPL---YQCCRIR 152 (221)
T ss_pred hHHHHHHHHHHHhcCCcchhhhhh-hccCCCceEEEEeCCcccCCCCCCccc-------------hhccH---HHhhhcc
Confidence 345567899999999999998854 42 5779999999888774321111 11111 0111333
Q ss_pred HHHHHHHHHHhhchHHHHHHH-HHHhhCCC-CCCchHHHHHHHHHh
Q psy656 343 ELCVQAFLAMRPYQESIISLV-SLMLDTGL-PCFRGQTIKLLRARF 386 (427)
Q Consensus 343 ~~c~~a~~~lR~~~~~ii~ll-~lm~~~~l-p~~~~~~i~~l~~rf 386 (427)
..+...+..+++....+-.++ +.+..+++ |-+....++.|.+|+
T Consensus 153 rST~~rL~~l~~~~~~Ls~~m~~s~~~D~l~PvL~e~Hl~AldrRL 198 (221)
T PF06702_consen 153 RSTWERLQLLSKGGYRLSDLMRESLSRDPLAPVLTEPHLEALDRRL 198 (221)
T ss_pred ccHHHHHHHhccCCCcHHHHHHHHhccCccCccCcHHHHHHHHHHH
Confidence 344444555553334444444 33334444 444555666666664
No 59
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=49.44 E-value=12 Score=33.44 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=22.9
Q ss_pred cCCCCCCceeEccCCcEEEEecccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
=||=|++|||++ +|.+.=||||..-.
T Consensus 138 H~Dl~p~Nili~-~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD-DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE-CCcEEEEECccccc
Confidence 478899999999 99999999998753
No 60
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=48.16 E-value=13 Score=35.50 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred cCCCCCCceeEccCCcEEEEecccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~i 304 (427)
=||=|.+|||++.+| +.=|||++.
T Consensus 157 HgD~~~~Nii~~~~~-~~iIDwe~a 180 (226)
T TIGR02172 157 HGDFQIGNLITSGKG-TYWIDLGDF 180 (226)
T ss_pred ecCCCCCcEEEcCCC-cEEEechhc
Confidence 688899999999988 889999876
No 61
>PRK12274 serine/threonine protein kinase; Provisional
Probab=47.42 E-value=16 Score=35.37 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.1
Q ss_pred Hhhcc--CCC-CCCceeEccCCcEEEEeccccc
Q psy656 276 FLLQI--KDR-HNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 276 YiLgi--gDR-H~~NIll~~~G~l~HIDFG~if 305 (427)
+=.|| +|= ..+|||++.+|++.=||||..-
T Consensus 108 H~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~ 140 (218)
T PRK12274 108 HRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAV 140 (218)
T ss_pred HHCcCccCCCCCcceEEEcCCCCEEEEECCCce
Confidence 34566 787 4799999999999999999875
No 62
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=47.16 E-value=15 Score=35.33 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=+++|||++.+|++.=||||..-
T Consensus 166 rDlkp~NILv~~~~~v~LIDfg~~~ 190 (239)
T PRK01723 166 ADLNAHNILLDPDGKFWLIDFDRGE 190 (239)
T ss_pred CCCCchhEEEcCCCCEEEEECCCcc
Confidence 6999999999999999999999654
No 63
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=46.99 E-value=12 Score=34.07 Aligned_cols=32 Identities=38% Similarity=0.398 Sum_probs=21.8
Q ss_pred HHHhhccCCCCCCceeEc-cCCcEEEEeccccc
Q psy656 274 IGFLLQIKDRHNGNIMLD-KAGHIIHIDFGFMF 305 (427)
Q Consensus 274 ~tYiLgigDRH~~NIll~-~~G~l~HIDFG~if 305 (427)
..+.+-=||=|.+|||++ .+|++-=|||+.+-
T Consensus 164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~ 196 (239)
T PF01636_consen 164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG 196 (239)
T ss_dssp SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred CCcEEEEeccccccceeeeccceeEEEecccce
Confidence 456677799999999999 57777789998864
No 64
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=46.57 E-value=35 Score=32.69 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=24.5
Q ss_pred cCCCCCCceeEccCCcEEEEeccccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~~ 307 (427)
-||=+++||+|+.+|.+.-+|||+.-..
T Consensus 124 H~dl~p~nili~~~~~~kl~dfg~~~~~ 151 (290)
T cd05580 124 YRDLKPENLLLDSDGYIKITDFGFAKRV 151 (290)
T ss_pred cCCCCHHHEEECCCCCEEEeeCCCcccc
Confidence 4899999999999999999999986543
No 65
>PRK05231 homoserine kinase; Provisional
Probab=44.58 E-value=56 Score=32.23 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=21.5
Q ss_pred hccCCCCCCceeEccCCcEEEEeccccc
Q psy656 278 LQIKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 278 LgigDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+==||=|.+|||++.++-..=|||+++=
T Consensus 189 liHgD~~~~Nil~~~~~~~~iIDf~~~~ 216 (319)
T PRK05231 189 VIHADLFRDNVLFEGDRLSGFIDFYFAC 216 (319)
T ss_pred cCCCCCCCCcEEEECCceEEEEeccccc
Confidence 4458999999999854434699998763
No 66
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=44.06 E-value=1e+02 Score=28.40 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.3
Q ss_pred cCCCCCCceeEccCCcEEEEeccccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~~ 307 (427)
-||=+++||+++.+|++.=+|||..-..
T Consensus 133 h~dl~p~nili~~~~~~kl~d~g~~~~~ 160 (265)
T cd08217 133 HRDLKPANIFLDANNNVKLGDFGLAKIL 160 (265)
T ss_pred ecCCCHHHEEEecCCCEEEecccccccc
Confidence 4788999999999999999999976543
No 67
>PRK10271 thiK thiamine kinase; Provisional
Probab=43.42 E-value=27 Score=32.90 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCcEEEEecccccccCC
Q psy656 255 KEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSP 309 (427)
Q Consensus 255 ~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p 309 (427)
..|......|...... +-+..++-=||=|++||+++.+| +.=|||++.=..+|
T Consensus 57 ~~wl~~~~~~~~~~~~-~~l~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp 109 (188)
T PRK10271 57 PFWLRMLKRLRKAGEP-RPLRLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDI 109 (188)
T ss_pred HHHHHHHHHHHhcccC-CCCCeeeecCCCCCccEEEECCC-EEEEeCCcccCCCH
Confidence 3555555555544333 23356777899999999998877 88999999866655
No 68
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=42.31 E-value=72 Score=31.46 Aligned_cols=29 Identities=24% Similarity=0.164 Sum_probs=24.4
Q ss_pred HhhccCCCCCCceeEccCCcEEEEecccc
Q psy656 276 FLLQIKDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 276 YiLgigDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+.+==||=|.+||+++.+|...-|||+++
T Consensus 187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~ 215 (307)
T TIGR00938 187 RGVIHADLFPDNVLFDGDSVKGVIDFYFA 215 (307)
T ss_pred CccCCCCCCcCcEEEECCceEEEeecccc
Confidence 44555899999999999886789999876
No 69
>KOG0610|consensus
Probab=42.30 E-value=58 Score=34.58 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=55.3
Q ss_pred HHHHcCCCceecCceEEEecCCcce-eeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy656 196 VFQQVGLDLYLFPYRVVATSPGCGV-IECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVI 274 (427)
Q Consensus 196 i~~~~~ldl~l~~Y~Vip~~~~~Gl-IE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~ 274 (427)
||..-...+--+-|..+-+..-.++ +|..++-.-..-.++|+...+.+ ....|..| - .-+.+
T Consensus 130 IL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse---------~~aRFYaA------E--vl~AL 192 (459)
T KOG0610|consen 130 ILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSE---------SAARFYAA------E--VLLAL 192 (459)
T ss_pred HHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccch---------hhHHHHHH------H--HHHHH
Confidence 4444556677777999888776554 77777654333333444322211 11112111 1 11122
Q ss_pred H--Hhhcc--CCCCCCceeEccCCcEEEEeccccc
Q psy656 275 G--FLLQI--KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 275 t--YiLgi--gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
= ..||| .|=-++||||..+|||.-.||-..+
T Consensus 193 EYLHmlGivYRDLKPENILvredGHIMLsDFDLS~ 227 (459)
T KOG0610|consen 193 EYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSL 227 (459)
T ss_pred HHHHhhceeeccCCcceeEEecCCcEEeeeccccc
Confidence 2 34666 5888999999999999999998654
No 70
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=42.21 E-value=21 Score=34.81 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=19.9
Q ss_pred cCCCCCCceeEccCCcEEEEecccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~i 304 (427)
=||=|++|++++.+| +.=|||+.-
T Consensus 158 HGD~hpgNFlv~~~~-i~iID~~~k 181 (229)
T PF06176_consen 158 HGDPHPGNFLVSNNG-IRIIDTQGK 181 (229)
T ss_pred cCCCCcCcEEEECCc-EEEEECccc
Confidence 389999999999655 999999643
No 71
>KOG0603|consensus
Probab=41.80 E-value=17 Score=40.00 Aligned_cols=28 Identities=46% Similarity=0.680 Sum_probs=24.4
Q ss_pred cCCCCCCceeEc-cCCcEEEEeccccccc
Q psy656 280 IKDRHNGNIMLD-KAGHIIHIDFGFMFES 307 (427)
Q Consensus 280 igDRH~~NIll~-~~G~l~HIDFG~if~~ 307 (427)
.+|=|++|||++ ..|++-=+|||+-=..
T Consensus 438 hRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 438 HRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred ecCCChhheeecCCCCcEEEEEechhhhC
Confidence 589999999995 7999999999987543
No 72
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=41.47 E-value=31 Score=34.55 Aligned_cols=25 Identities=44% Similarity=0.705 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|++.=+|||..-
T Consensus 155 rDLkp~NILl~~~~~ikL~DFG~a~ 179 (340)
T PTZ00426 155 RDLKPENLLLDKDGFIKMTDFGFAK 179 (340)
T ss_pred cCCCHHHEEECCCCCEEEecCCCCe
Confidence 7888999999999999999999864
No 73
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=41.26 E-value=21 Score=32.43 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=24.1
Q ss_pred HHhhccCCCCCCceeEcc--CCcEEEEeccccc
Q psy656 275 GFLLQIKDRHNGNIMLDK--AGHIIHIDFGFMF 305 (427)
Q Consensus 275 tYiLgigDRH~~NIll~~--~G~l~HIDFG~if 305 (427)
-..+==||=|.+|||++. +|.+.=|||+..-
T Consensus 173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~ 205 (223)
T cd05154 173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT 205 (223)
T ss_pred CcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence 345556999999999998 5556679998764
No 74
>PRK10345 hypothetical protein; Provisional
Probab=40.90 E-value=60 Score=30.82 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=44.2
Q ss_pred CceecCceEEEecCCcce-eeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy656 203 DLYLFPYRVVATSPGCGV-IECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIK 281 (427)
Q Consensus 203 dl~l~~Y~Vip~~~~~Gl-IE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgig 281 (427)
+--++.|.++-++.+.|. .+.|-+... ....+|.+++.+.--++......++...|. .|.--.-|+ -.
T Consensus 61 ~nIvr~yg~~et~~g~g~v~~~I~e~~G------~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~----~yLh~~~Iv-hr 129 (210)
T PRK10345 61 SGIPRYYGTVETDCGTGYVYDVIADFDG------KPSITLTEFAEQCRYEEDVAQLRQLLKKLK----RYLLDNRIV-TM 129 (210)
T ss_pred cccceeeEEEEeCCCCeEEEEEEecCCC------CcchhHHHHHHcccccHhHHHHHHHHHHHH----HHHHHCCEe-ec
Confidence 445677899999887787 445544200 011234444432110111001122222221 122211122 57
Q ss_pred CCCCCceeEccC----CcEEEEec
Q psy656 282 DRHNGNIMLDKA----GHIIHIDF 301 (427)
Q Consensus 282 DRH~~NIll~~~----G~l~HIDF 301 (427)
|=.++|||+++. ++++=|||
T Consensus 130 DlKp~NILl~~~~~~~~~~~LiDg 153 (210)
T PRK10345 130 ELKPQNILCQRISESEVIPVVCDN 153 (210)
T ss_pred CCCHHHEEEeccCCCCCcEEEEEC
Confidence 888999999862 37999995
No 75
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=39.26 E-value=27 Score=27.69 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCceeEcc
Q psy656 263 NFVRSMAAYSVIGFLLQIKDRHNGNIMLDK 292 (427)
Q Consensus 263 nF~~S~A~ysv~tYiLgigDRH~~NIll~~ 292 (427)
.-.+.+.-+-++.+++|=+|||..|+=+-.
T Consensus 38 ~~~~~l~~~~~fn~ligN~D~H~kN~s~l~ 67 (79)
T PF07804_consen 38 ADVRELFRRLVFNYLIGNTDRHLKNFSFLY 67 (79)
T ss_dssp HHHHHHHHHHHHHHHCTBS---CCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcCCcCCEEEEE
Confidence 444566677899999999999999986643
No 76
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=38.06 E-value=75 Score=29.42 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.5
Q ss_pred cCCCCCCceeEccCCcEEEEeccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if 305 (427)
-||=.++||+++.+|++.-+|||...
T Consensus 124 h~dl~p~ni~i~~~~~~~l~d~g~~~ 149 (262)
T cd06613 124 HRDIKGANILLTEDGDVKLADFGVSA 149 (262)
T ss_pred ecCCChhhEEECCCCCEEECccccch
Confidence 47889999999999999999999865
No 77
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=37.05 E-value=1.1e+02 Score=29.02 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=54.5
Q ss_pred cCceEEEecCCcce-eeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy656 207 FPYRVVATSPGCGV-IECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHN 285 (427)
Q Consensus 207 ~~Y~Vip~~~~~Gl-IE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgigDRH~ 285 (427)
+.|..+.|+.+.|+ .|.|.+.. | ....+|.+|+.+. .-+....++.+.|.+-+....|++ .|=+.
T Consensus 81 r~~G~veT~~G~Glv~e~I~d~d-----G-~~s~TL~~~l~~~---~~~~~~~~~L~~f~~~l~~~~Iv~-----~dl~~ 146 (199)
T PF10707_consen 81 RFYGFVETNLGLGLVVELIRDAD-----G-NISPTLEDYLKEG---GLTEELRQALDEFKRYLLDHHIVI-----RDLNP 146 (199)
T ss_pred cEeEEEecCCceEEEEEEEECCC-----C-CcCccHHHHHHcC---CccHHHHHHHHHHHHHHHHcCCee-----cCCCc
Confidence 44999999999887 46665531 0 1123455555322 123467888899999887777665 58899
Q ss_pred CceeEcc--CC--cEEEEec
Q psy656 286 GNIMLDK--AG--HIIHIDF 301 (427)
Q Consensus 286 ~NIll~~--~G--~l~HIDF 301 (427)
+||++.. +| +++=||-
T Consensus 147 ~NIv~~~~~~~~~~lvlIDG 166 (199)
T PF10707_consen 147 HNIVVQRRDSGEFRLVLIDG 166 (199)
T ss_pred ccEEEEecCCCceEEEEEeC
Confidence 9999986 34 4777774
No 78
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=36.69 E-value=32 Score=28.43 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=|++|||++.+|.+.=+|||..-
T Consensus 113 ~Dl~~~Nil~~~~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDDGKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEECCcEEEEEeccccc
Confidence 8999999999999999999998764
No 79
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=36.68 E-value=17 Score=34.09 Aligned_cols=27 Identities=41% Similarity=0.444 Sum_probs=23.9
Q ss_pred cCCCCCCceeEccCCcEEEEecccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
-||=+++||+++.+|++..+|||....
T Consensus 125 H~dl~~~ni~i~~~~~~~l~df~~~~~ 151 (280)
T cd05581 125 HRDLKPENILLDKDMHIKITDFGTAKV 151 (280)
T ss_pred ecCCCHHHeEECCCCCEEecCCccccc
Confidence 379999999999999999999997653
No 80
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=36.68 E-value=1.5e+02 Score=27.24 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
||-+++||+++.+|++.=+|||....
T Consensus 125 ~dl~~~nili~~~~~~~l~df~~~~~ 150 (256)
T cd08529 125 RDIKSLNLFLDAYDNVKIGDLGVAKL 150 (256)
T ss_pred CCCCcceEEEeCCCCEEEccccccee
Confidence 78999999999999999999997653
No 81
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=36.63 E-value=28 Score=32.88 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=23.2
Q ss_pred HHhhccCCCCCCceeEccCCcEEEEecccc
Q psy656 275 GFLLQIKDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 275 tYiLgigDRH~~NIll~~~G~l~HIDFG~i 304 (427)
.+.|==||=|.+|||++..+-.--|||+.+
T Consensus 163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a 192 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCL 192 (235)
T ss_pred CceEEeCCCCCCcEEEECCCEEEEEeCccc
Confidence 555667999999999985443458999975
No 82
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=36.11 E-value=55 Score=31.57 Aligned_cols=25 Identities=52% Similarity=0.798 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=.++|||++.+|++.=+|||..-
T Consensus 125 ~dlkp~NIli~~~~~~kl~Dfg~~~ 149 (291)
T cd05612 125 RDLKPENILLDKEGHIKLTDFGFAK 149 (291)
T ss_pred cCCCHHHeEECCCCCEEEEecCcch
Confidence 6778899999999999999999864
No 83
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=35.89 E-value=55 Score=32.21 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++|||++.+|.+.=+|||..-
T Consensus 120 ~dlkp~NIli~~~~~~kL~DfG~~~ 144 (320)
T cd05590 120 RDLKLDNVLLDHEGHCKLADFGMCK 144 (320)
T ss_pred CCCCHHHeEECCCCcEEEeeCCCCe
Confidence 7888999999999999999999753
No 84
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=35.46 E-value=21 Score=35.76 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=23.0
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=+++||||+.+|++.-+|||..-
T Consensus 125 rDLkp~NIli~~~~~vkL~DfG~~~ 149 (360)
T cd05627 125 RDIKPDNLLLDAKGHVKLSDFGLCT 149 (360)
T ss_pred cCCCHHHEEECCCCCEEEeeccCCc
Confidence 7888999999999999999999864
No 85
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=35.38 E-value=1.5e+02 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++||+++.+|.+.-+|||...
T Consensus 130 ~dl~~~nil~~~~~~~~l~d~g~~~ 154 (267)
T cd08228 130 RDIKPANVFITATGVVKLGDLGLGR 154 (267)
T ss_pred CCCCHHHEEEcCCCCEEECccccce
Confidence 7889999999999999999999754
No 86
>smart00090 RIO RIO-like kinase.
Probab=34.90 E-value=26 Score=33.70 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=|++|||++ +|++.=||||...
T Consensus 173 ~Dikp~NIli~-~~~i~LiDFg~a~ 196 (237)
T smart00090 173 GDLSEYNILVH-DGKVVIIDVSQSV 196 (237)
T ss_pred CCCChhhEEEE-CCCEEEEEChhhh
Confidence 79999999999 8999999999765
No 87
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=34.44 E-value=22 Score=34.95 Aligned_cols=24 Identities=46% Similarity=0.735 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=+++|||++.+|++.-+|||..
T Consensus 125 ~dlkp~Nill~~~~~~kL~Dfg~~ 148 (324)
T cd05587 125 RDLKLDNVMLDAEGHIKIADFGMC 148 (324)
T ss_pred cCCCHHHeEEcCCCCEEEeecCcc
Confidence 788899999999999999999975
No 88
>KOG0694|consensus
Probab=33.58 E-value=27 Score=38.93 Aligned_cols=135 Identities=22% Similarity=0.273 Sum_probs=71.7
Q ss_pred EEEeCCchhhHHHHHHHHHHHHHHHHH-cCCCceecCceEEEecCCc-ceeeeeCCCchhhhhhccCCcchHHHHHHHcC
Q psy656 173 IFKVGDDVRQDMLALQVISIFKNVFQQ-VGLDLYLFPYRVVATSPGC-GVIECVPDAKSRDQLGRQTDIGMYEYFIKTYG 250 (427)
Q Consensus 173 i~K~gDDLRqD~l~lQli~lm~~i~~~-~~ldl~l~~Y~Vip~~~~~-GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~ 250 (427)
.+|.+ ++=||--+.++..- .+|+.- .+...-...|.+.=|.... =+.|.+.+.. +..+..
T Consensus 400 ~LKK~-~Il~~d~Ve~~~~E-krI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggd-m~~~~~--------------- 461 (694)
T KOG0694|consen 400 VLKKG-DILQRDEVESLMCE-KRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGD-LMHHIH--------------- 461 (694)
T ss_pred Eeecc-ceeccccHHHHHHH-HHHHHHhccCCeEeecccccccCCeEEEEEEecCCCc-EEEEEe---------------
Confidence 45654 44344444444322 233332 2455556677777776553 3467777655 222211
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhc--c--CCCCCCceeEccCCcEEEEecccccccCCCCCCCCCCCccccHHHH
Q psy656 251 DETSKEFQNARRNFVRSMAAYSVIGFLLQ--I--KDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMV 326 (427)
Q Consensus 251 ~~~~~~~~~ar~nF~~S~A~ysv~tYiLg--i--gDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv 326 (427)
...|.++|-+|..-+ ..+.+.|+=. | .|=-+||||||.+||+==+|||.+=+.--.|+ ...-|==|++++
T Consensus 462 ---~~~F~e~rarfyaAe-v~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~--~TsTfCGTpey~ 535 (694)
T KOG0694|consen 462 ---TDVFSEPRARFYAAE-VVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGD--RTSTFCGTPEFL 535 (694)
T ss_pred ---cccccHHHHHHHHHH-HHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCCC--ccccccCChhhc
Confidence 122445555554332 2233334322 2 48889999999999999999998742210011 122466666665
Q ss_pred --HHhCC
Q psy656 327 --MVMGG 331 (427)
Q Consensus 327 --~~mGg 331 (427)
+++-+
T Consensus 536 aPEil~e 542 (694)
T KOG0694|consen 536 APEVLTE 542 (694)
T ss_pred Chhhhcc
Confidence 44443
No 89
>PRK11768 serine/threonine protein kinase; Provisional
Probab=33.50 E-value=87 Score=31.51 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHhhccCCCCCCceeEccCCcEEEEecccccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHHh
Q psy656 274 IGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMR 353 (427)
Q Consensus 274 ~tYiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~lR 353 (427)
..+.+-=||=|.+|||++ +| +.-|||+.+-- +| .. + ++...+.+... . -......+..||...|
T Consensus 194 ~~~~liHgD~h~~NvL~~-d~-~~iIDFDd~~~-g~-----~i--~----DLa~~l~~~~~-~-~~~~~~~~l~GY~~~r 257 (325)
T PRK11768 194 VRLLRLHGDCHPGNILWR-DG-PHFVDLDDARM-GP-----AV--Q----DLWMLLSGDRA-E-QLMQLETLLEGYEEFC 257 (325)
T ss_pred CCccceecCCCchhcccc-CC-cEEEeCCCCCC-CC-----HH--H----HHHHHhccCcc-h-hHHHHHHHHHHhhccC
Confidence 356667799999999995 44 56699987631 11 00 1 22223333211 1 1345556777777777
Q ss_pred hchHH
Q psy656 354 PYQES 358 (427)
Q Consensus 354 ~~~~~ 358 (427)
.-...
T Consensus 258 ~l~~~ 262 (325)
T PRK11768 258 EFDPR 262 (325)
T ss_pred CCCHH
Confidence 64433
No 90
>KOG0690|consensus
Probab=33.04 E-value=22 Score=36.83 Aligned_cols=48 Identities=35% Similarity=0.583 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----cCCCCCCceeEccCCcEEEEeccccc
Q psy656 257 FQNARRNFVRSMAAYSVIGFLLQ----IKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 257 ~~~ar~nF~~S~A~ysv~tYiLg----igDRH~~NIll~~~G~l~HIDFG~if 305 (427)
|-+.|.+|--+- .-|.++|+-. -.|-.++|+|+|++||+=-.|||.+=
T Consensus 265 FsE~RtRFYGaE-IvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCK 316 (516)
T KOG0690|consen 265 FSEDRTRFYGAE-IVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCK 316 (516)
T ss_pred ccchhhhhhhHH-HHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccch
Confidence 445666664432 3345566532 35778899999999999999999874
No 91
>KOG0696|consensus
Probab=33.02 E-value=28 Score=37.12 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
.|--+||+|++.+||+=-.|||++=
T Consensus 474 RDLKLDNvmLd~eGHiKi~DFGmcK 498 (683)
T KOG0696|consen 474 RDLKLDNVMLDSEGHIKIADFGMCK 498 (683)
T ss_pred eeccccceEeccCCceEeeeccccc
Confidence 5788999999999999999999864
No 92
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=32.27 E-value=55 Score=32.36 Aligned_cols=27 Identities=37% Similarity=0.684 Sum_probs=23.7
Q ss_pred cCCCCCCceeEccCCcEEEEecccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
-+|=.++||||+.+|++.=+|||+.-.
T Consensus 141 H~dlkp~NIll~~~~~~kl~Dfg~~~~ 167 (329)
T PTZ00263 141 YRDLKPENLLLDNKGHVKVTDFGFAKK 167 (329)
T ss_pred ecCCCHHHEEECCCCCEEEeeccCceE
Confidence 478889999999999999999998643
No 93
>PHA00451 protein kinase
Probab=32.26 E-value=64 Score=32.53 Aligned_cols=42 Identities=29% Similarity=0.454 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC--CCCCCceeEccCCcEEEEe
Q psy656 257 FQNARRNFVRSMAAYSVIGFLLQIK--DRHNGNIMLDKAGHIIHID 300 (427)
Q Consensus 257 ~~~ar~nF~~S~A~ysv~tYiLgig--DRH~~NIll~~~G~l~HID 300 (427)
|..--..|+.+|-- +=-|+.||- |=|.+|||++++|..+=.|
T Consensus 169 ~~~~~~~FIETCk~--IRkFF~GIASFDmHSGNiMf~~~g~p~ITD 212 (362)
T PHA00451 169 EYPGSQEFIETCKM--IRKFFYGIASFDMHSGNIMFDQDGVPYITD 212 (362)
T ss_pred ccCCchhHHHHHHH--HHHHHhhhhcccccCCceeeCCCCCeEecC
Confidence 33334566666643 222333433 8999999999999988776
No 94
>KOG0592|consensus
Probab=31.82 E-value=30 Score=37.82 Aligned_cols=27 Identities=48% Similarity=0.717 Sum_probs=22.6
Q ss_pred CCCCCceeEccCCcEEEEeccc--ccccC
Q psy656 282 DRHNGNIMLDKAGHIIHIDFGF--MFESS 308 (427)
Q Consensus 282 DRH~~NIll~~~G~l~HIDFG~--if~~~ 308 (427)
|=-++|||||++||+-=.|||- +|+..
T Consensus 199 DlKPENILLd~dmhikITDFGsAK~l~~~ 227 (604)
T KOG0592|consen 199 DLKPENILLDKDGHIKITDFGSAKILSPS 227 (604)
T ss_pred cCChhheeEcCCCcEEEeeccccccCChh
Confidence 6678999999999999999995 45443
No 95
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=31.74 E-value=40 Score=31.47 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.0
Q ss_pred HHhhccCCCCCCceeEcc-CCcEEEEecccccccCC
Q psy656 275 GFLLQIKDRHNGNIMLDK-AGHIIHIDFGFMFESSP 309 (427)
Q Consensus 275 tYiLgigDRH~~NIll~~-~G~l~HIDFG~if~~~p 309 (427)
..+|-=||=|.+|||++. ++.+.=|||-+.--..|
T Consensus 169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~ 204 (235)
T cd05157 169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR 204 (235)
T ss_pred CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCch
Confidence 356667999999999998 68899999987654333
No 96
>KOG1235|consensus
Probab=31.61 E-value=35 Score=37.37 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCCCCCceeEcc----CCcEEEEecccccccC
Q psy656 281 KDRHNGNIMLDK----AGHIIHIDFGFMFESS 308 (427)
Q Consensus 281 gDRH~~NIll~~----~G~l~HIDFG~if~~~ 308 (427)
+|=|+|||++++ +++++--|||..-..+
T Consensus 325 aDPHPGNilv~~~~~~~~~ivllDhGl~~~is 356 (538)
T KOG1235|consen 325 ADPHPGNILVRPNPEGDEEIVLLDHGLYAVIS 356 (538)
T ss_pred CCCCCCcEEEecCCCCCccEEEEccccccccc
Confidence 699999999993 7899999999864443
No 97
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=31.52 E-value=57 Score=31.54 Aligned_cols=47 Identities=26% Similarity=0.392 Sum_probs=32.5
Q ss_pred CCCCCCceeEccCCcEEEEecccccccCCCCC---CCCCCCccccHHHHH
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFESSPGGN---LGFEPDIKLTDEMVM 327 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~~~p~~~---~~~~~PFrLT~~mv~ 327 (427)
||=+++|||++.+|.+.=+|||......+... .....|.-+.||+..
T Consensus 139 ~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 188 (297)
T cd06656 139 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT 188 (297)
T ss_pred CCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHc
Confidence 78899999999999999999998754432211 111224566777764
No 98
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=31.40 E-value=82 Score=31.32 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
+|=.++||||+.+|.+.=+|||..-.
T Consensus 143 rDikp~Nill~~~~~~kl~Dfg~~~~ 168 (355)
T cd07874 143 RDLKPSNIVVKSDCTLKILDFGLART 168 (355)
T ss_pred CCCChHHEEECCCCCEEEeeCccccc
Confidence 57788999999999999999998743
No 99
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=31.11 E-value=28 Score=32.29 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.3
Q ss_pred cCCCCCCceeEccCCcEEEEeccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if 305 (427)
=+|=.++|||++.+|++.-+|||...
T Consensus 121 H~dikp~NIl~~~~~~~~l~Dfg~~~ 146 (260)
T PF00069_consen 121 HRDIKPENILLDENGEVKLIDFGSSV 146 (260)
T ss_dssp ESSBSGGGEEESTTSEEEESSGTTTE
T ss_pred cccccccccccccccccccccccccc
Confidence 36778999999999999999999875
No 100
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=30.49 E-value=1.2e+02 Score=28.50 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|-.++|||++.+|++.=+|||..-
T Consensus 124 ~dlkp~nil~~~~~~~kL~dfg~~~ 148 (269)
T cd05087 124 SDLALRNCLLTADLTVKIGDYGLSH 148 (269)
T ss_pred cccCcceEEEcCCCcEEECCccccc
Confidence 7888999999999999999999763
No 101
>KOG0984|consensus
Probab=30.45 E-value=36 Score=33.23 Aligned_cols=45 Identities=22% Similarity=0.444 Sum_probs=31.5
Q ss_pred CCCCCCceeEccCCcEEEEecccc--c-ccC----CCCCCCCCCCccccHHH
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM--F-ESS----PGGNLGFEPDIKLTDEM 325 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i--f-~~~----p~~~~~~~~PFrLT~~m 325 (427)
.|=-++||||+.+|++=-+|||.. | ++- ..|.-+.-+|=|+.++.
T Consensus 173 RDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~ 224 (282)
T KOG0984|consen 173 RDVKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPEL 224 (282)
T ss_pred ccCCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCccc
Confidence 577899999999999999999963 2 110 11334566677776665
No 102
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=30.37 E-value=84 Score=29.73 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=23.1
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
||-.++|||++.+|.+.-+|||....
T Consensus 148 ~dlkp~nili~~~~~~kl~dfg~~~~ 173 (286)
T cd06638 148 RDVKGNNILLTTEGGVKLVDFGVSAQ 173 (286)
T ss_pred cCCCHHhEEECCCCCEEEccCCceee
Confidence 78889999999999999999998653
No 103
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=30.11 E-value=33 Score=33.25 Aligned_cols=25 Identities=32% Similarity=0.605 Sum_probs=22.5
Q ss_pred cCCCCCCceeEccCCcEEEEecccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~i 304 (427)
-||=|++||+++.+|.+.-+|||..
T Consensus 124 H~dl~p~NIll~~~~~~~l~dfg~~ 148 (305)
T cd05609 124 HRDLKPDNLLITSMGHIKLTDFGLS 148 (305)
T ss_pred ccCCchHHEEECCCCCEEEeeCCCc
Confidence 4788999999999999999999964
No 104
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=29.99 E-value=30 Score=34.85 Aligned_cols=24 Identities=42% Similarity=0.787 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++|||++.+|++.-+|||..
T Consensus 125 rDlkp~Nill~~~~~ikL~DFG~a 148 (376)
T cd05598 125 RDIKPDNILIDRDGHIKLTDFGLC 148 (376)
T ss_pred CCCCHHHEEECCCCCEEEEeCCCC
Confidence 788999999999999999999975
No 105
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=29.80 E-value=33 Score=32.60 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.8
Q ss_pred cCCCCCCceeEccCCcEEEEeccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if 305 (427)
-||-+++||+++.+|++.-+|||..-
T Consensus 124 H~dl~p~Nil~~~~~~~~l~dfg~~~ 149 (277)
T cd06640 124 HRDIKAANVLLSEQGDVKLADFGVAG 149 (277)
T ss_pred CcCCChhhEEEcCCCCEEEcccccce
Confidence 38999999999999999999999864
No 106
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=29.27 E-value=1.3e+02 Score=22.45 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=32.5
Q ss_pred CCCCCCch----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q psy656 369 TGLPCFRG----QTIKLLRARFAPQATDKEAAAFMIGVIRNSFL 408 (427)
Q Consensus 369 ~~lp~~~~----~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~ 408 (427)
+++|.++. ++++.+++=..-++|..||...+.+-|++...
T Consensus 3 ~~lp~LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 3 NDLPSLTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 67899984 36777777777899999999999999988654
No 107
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=29.22 E-value=36 Score=31.59 Aligned_cols=29 Identities=31% Similarity=0.636 Sum_probs=20.6
Q ss_pred HhhccCCCCCCceeE-ccCCcEEEEecccc
Q psy656 276 FLLQIKDRHNGNIML-DKAGHIIHIDFGFM 304 (427)
Q Consensus 276 YiLgigDRH~~NIll-~~~G~l~HIDFG~i 304 (427)
.++.=+|=|.+|||+ +.+|++.=|||-|.
T Consensus 143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 143 LVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp EEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred ceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 678889999999999 66999999999875
No 108
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=29.07 E-value=89 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++||+++.+|.+.-+|||..-
T Consensus 124 ~dl~p~ni~i~~~~~~kl~dfg~~~ 148 (256)
T cd05059 124 RDLAARNCLVGEDNVVKVSDFGLAR 148 (256)
T ss_pred ccccHhhEEECCCCcEEECCcccce
Confidence 8889999999999999999999753
No 109
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=28.97 E-value=29 Score=34.18 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|++.=+|||..-
T Consensus 125 rDlkp~Nill~~~~~~kL~DfG~~~ 149 (323)
T cd05616 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCcEEEccCCCce
Confidence 7888999999999999999999764
No 110
>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1. Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.
Probab=28.82 E-value=95 Score=28.84 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=32.8
Q ss_pred cCCCCCCceeEccCCcEEEEecccccccCCCCCCCCC--CCccccHHHHHH
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFE--PDIKLTDEMVMV 328 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~--~PFrLT~~mv~~ 328 (427)
-||=.++||+++.+|++.=+|||......++...... .+.-+.||+...
T Consensus 123 h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~ 173 (258)
T cd05578 123 HRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCR 173 (258)
T ss_pred ccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCChhhcCHHHHcc
Confidence 4788899999999999999999987654332111111 134456776543
No 111
>PHA03210 serine/threonine kinase US3; Provisional
Probab=28.73 E-value=93 Score=33.21 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++||||+.+|++.=+|||..
T Consensus 291 rDLKP~NILl~~~~~vkL~DFGla 314 (501)
T PHA03210 291 RDIKLENIFLNCDGKIVLGDFGTA 314 (501)
T ss_pred CCCCHHHEEECCCCCEEEEeCCCc
Confidence 577789999999999999999986
No 112
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=28.68 E-value=80 Score=30.52 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.4
Q ss_pred cCCCCCCceeEccCCcEEEEeccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if 305 (427)
-||=++.||+++.+|++.=+|||+.-
T Consensus 139 H~dl~p~Nilv~~~~~~~l~dfg~~~ 164 (292)
T cd06657 139 HRDIKSDSILLTHDGRVKLSDFGFCA 164 (292)
T ss_pred cCCCCHHHEEECCCCCEEEcccccce
Confidence 48999999999999999889999754
No 113
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=28.52 E-value=99 Score=29.36 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|.+.=+|||..-
T Consensus 134 ~dlkp~Nil~~~~~~~kl~Dfg~~~ 158 (290)
T cd07862 134 RDLKPQNILVTSSGQIKLADFGLAR 158 (290)
T ss_pred CCCCHHHEEEcCCCCEEEccccceE
Confidence 7888999999999999999999763
No 114
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=28.27 E-value=44 Score=32.61 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.4
Q ss_pred HhhccCCCCCCceeEccCCcEEEEecccc
Q psy656 276 FLLQIKDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 276 YiLgigDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+.|-=||=|.+|||++. |.+.-|||+.+
T Consensus 187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~ 214 (313)
T TIGR02906 187 RGFCHQDYAYHNILLKD-NEVYVIDFDYC 214 (313)
T ss_pred CceEcCCCCcccEEEeC-CcEEEEECccc
Confidence 55678999999999998 78999999865
No 115
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=28.13 E-value=87 Score=31.68 Aligned_cols=24 Identities=42% Similarity=0.721 Sum_probs=22.1
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++||||+.+|++.=+|||..
T Consensus 125 rDlKp~Nili~~~~~~kL~DFGl~ 148 (381)
T cd05626 125 RDIKPDNILIDLDGHIKLTDFGLC 148 (381)
T ss_pred cCCcHHHEEECCCCCEEEeeCcCC
Confidence 688899999999999999999974
No 116
>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a
Probab=28.03 E-value=98 Score=30.45 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=22.4
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|++.=+|||..-
T Consensus 125 rDikp~Nill~~~~~ikL~Dfg~~~ 149 (323)
T cd05615 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCCEEEecccccc
Confidence 6888999999999999999999754
No 117
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=27.88 E-value=1.1e+02 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=.++|||++.+|++.=+|||+.-
T Consensus 126 ~dlkp~nil~~~~~~~kl~dfg~~~ 150 (256)
T cd05082 126 RDLAARNVLVSEDNVAKVSDFGLTK 150 (256)
T ss_pred cccchheEEEcCCCcEEecCCccce
Confidence 5777899999999999999999764
No 118
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=27.73 E-value=5.5e+02 Score=24.63 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=.++|||++.+|.+.=+|||..-
T Consensus 148 ~dlkp~Nili~~~~~~kl~dfg~~~ 172 (303)
T cd05088 148 RDLAARNILVGENYVAKIADFGLSR 172 (303)
T ss_pred cccchheEEecCCCcEEeCccccCc
Confidence 7788899999999999999999864
No 119
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=27.12 E-value=35 Score=33.58 Aligned_cols=25 Identities=40% Similarity=0.743 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++||||+.+|++.=+|||..-
T Consensus 120 ~dikp~NIll~~~~~~kl~Dfg~~~ 144 (323)
T cd05575 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (323)
T ss_pred CCCCHHHeEECCCCcEEEeccCCCc
Confidence 6888899999999999999999764
No 120
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=27.09 E-value=96 Score=31.28 Aligned_cols=24 Identities=42% Similarity=0.787 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++||||+.+|++.=+|||..
T Consensus 125 rDlKp~NILl~~~g~~kL~DFGla 148 (382)
T cd05625 125 RDIKPDNILIDRDGHIKLTDFGLC 148 (382)
T ss_pred CCCCHHHEEECCCCCEEEeECCCC
Confidence 788999999999999999999975
No 121
>KOG3087|consensus
Probab=26.94 E-value=4e+02 Score=25.85 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=48.8
Q ss_pred eecCceEEEecCCc--ceeeeeCCCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHHHHH----HHHHHHHHhh
Q psy656 205 YLFPYRVVATSPGC--GVIECVPDAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFVRSM----AAYSVIGFLL 278 (427)
Q Consensus 205 ~l~~Y~Vip~~~~~--GlIE~V~~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~----A~ysv~tYiL 278 (427)
-+....++...+.. =.+||++++.+... |+.++..++..+ +...+|.+-. |-+=--.++
T Consensus 71 GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~-----------~i~~~~~~~~~d---~~~~~~~~~iG~~igklH~ndii- 135 (229)
T KOG3087|consen 71 GIPAPRLIFIDTYGGQIYMEFIDGASTVKD-----------FILSTMEDESED---EGLAELARRIGELIGKLHDNDII- 135 (229)
T ss_pred CCCCceEEEEecCCCeEEEEeccchhHHHH-----------HHHHHccCcccc---hhHHHHHHHHHHHHHHhhhCCee-
Confidence 34456777754444 46799988766543 334443332221 1212333322 111111111
Q ss_pred ccCCCCCCceeEcc-CCcE--EEEeccccccc
Q psy656 279 QIKDRHNGNIMLDK-AGHI--IHIDFGFMFES 307 (427)
Q Consensus 279 gigDRH~~NIll~~-~G~l--~HIDFG~if~~ 307 (427)
=||=-..||||.. .+++ +-||||.-..+
T Consensus 136 -HGDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 136 -HGDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred -cccccccceEEecCCCcCceEEEeecchhcc
Confidence 3799999999998 6666 89999987755
No 122
>COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]
Probab=26.68 E-value=30 Score=35.72 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=52.2
Q ss_pred cCCCCCCceeEccCCcEEEEeccc---ccccCCCCCCCCCCCccccHHHHHHhCCCcCCcchHHHHHHHHHHHHHH
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGF---MFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAM 352 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~---if~~~p~~~~~~~~PFrLT~~mv~~mGg~~~~~~f~~F~~~c~~a~~~l 352 (427)
||-||-|=++.=+.|+++-||--- .=|-.||-| -|.++-..+|-++|-+|++..-+.|-++.+.+-..+
T Consensus 41 igq~HEGAllal~e~R~V~Id~~~a~~l~gVkpGIN----LPi~~~~~vVGViGITGeP~~Vr~y~ELVrm~AEll 112 (376)
T COG3835 41 IGQLHEGALLALKERRVVEIDQAVARKLKGVKPGIN----LPIRFDGKVVGVIGITGEPEEVRKYGELVRMTAELL 112 (376)
T ss_pred hcchhhHHHHHHhcCcEEEeeHHHHHHhcCCCCCCC----cceEecCceEEEEeccCChHHHHHHHHHHHHHHHHH
Confidence 567899999988999999999863 224455433 368889999999999998888888887765554433
No 123
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=26.66 E-value=38 Score=33.10 Aligned_cols=24 Identities=46% Similarity=0.740 Sum_probs=21.9
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=+++|||++.+|++.=+|||..
T Consensus 117 rDlkp~Nili~~~~~~kl~Dfg~~ 140 (312)
T cd05585 117 RDLKPENILLDYQGHIALCDFGLC 140 (312)
T ss_pred CCCCHHHeEECCCCcEEEEECccc
Confidence 677889999999999999999975
No 124
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=26.42 E-value=42 Score=31.48 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
||=+++||+++.+|++.-+|||....
T Consensus 130 ~di~p~nili~~~~~~~l~dfg~~~~ 155 (266)
T cd05033 130 RDLAARNILVNSNLVCKVSDFGLSRR 155 (266)
T ss_pred CCCCcceEEEcCCCCEEECccchhhc
Confidence 68899999999999999999998653
No 125
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=26.35 E-value=37 Score=33.41 Aligned_cols=24 Identities=42% Similarity=0.783 Sum_probs=22.0
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++|||++.+|++.=+|||..
T Consensus 129 rDlkp~Nili~~~~~~kl~DfG~~ 152 (332)
T cd05614 129 RDIKLENILLDSEGHVVLTDFGLS 152 (332)
T ss_pred cCCCHHHeEECCCCCEEEeeCcCC
Confidence 678889999999999999999975
No 126
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=26.27 E-value=50 Score=32.45 Aligned_cols=24 Identities=50% Similarity=0.772 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++||||+.+|.+.=+|||..
T Consensus 120 rDikp~NIll~~~~~~kL~Dfg~~ 143 (325)
T cd05594 120 RDLKLENLMLDKDGHIKITDFGLC 143 (325)
T ss_pred cCCCCCeEEECCCCCEEEecCCCC
Confidence 899999999999999999999975
No 127
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=26.08 E-value=35 Score=33.51 Aligned_cols=24 Identities=46% Similarity=0.760 Sum_probs=22.1
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++|||++.+|++.-+|||..
T Consensus 120 ~dlkp~Nill~~~~~~kL~Dfg~a 143 (316)
T cd05592 120 RDLKLDNVLLDKDGHIKIADFGMC 143 (316)
T ss_pred CCCCHHHeEECCCCCEEEccCcCC
Confidence 688899999999999999999975
No 128
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=26.02 E-value=73 Score=31.36 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++|||++.+|++.=+|||..-
T Consensus 125 ~dlkp~Nil~~~~~~~kL~Dfg~a~ 149 (333)
T cd05600 125 RDLKPENFLIDASGHIKLTDFGLSK 149 (333)
T ss_pred cCCCHHHEEECCCCCEEEEeCcCCc
Confidence 7888999999999999999999764
No 129
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=25.95 E-value=57 Score=30.53 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=41.9
Q ss_pred cCceEEEecCCcceeeeeC-CCchhhhhhccCCcchHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc--CCC
Q psy656 207 FPYRVVATSPGCGVIECVP-DAKSRDQLGRQTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQI--KDR 283 (427)
Q Consensus 207 ~~Y~Vip~~~~~GlIE~V~-~~~sl~~i~~~~~~~l~~~f~~~~~~~~~~~~~~ar~nF~~S~A~ysv~tYiLgi--gDR 283 (427)
...+++..+.+.=++|.|+ +..++..+...... .......+.+.......- -.-.|| ||=
T Consensus 71 ~vP~p~~~~~~~ivME~I~~~G~~~~~l~~~~~~----------~~~~~~~~~~il~~~~~~-------~~~~givHGDL 133 (188)
T PF01163_consen 71 PVPKPYDYNRNVIVMEYIGEDGVPLPRLKDVDLS----------PEEPKELLEEILEEIIKM-------LHKAGIVHGDL 133 (188)
T ss_dssp SS--EEEEETTEEEEE--EETTEEGGCHHHCGGG----------GSTHHHHHHHHHHHHHHH-------HHCTTEEESS-
T ss_pred cCCcEEEEeCCEEEEEecCCCccchhhHHhcccc----------chhHHHHHHHHHHHHHHH-------HHhcCceecCC
Confidence 3457778888888899998 33444444321100 001011122222211111 112344 899
Q ss_pred CCCceeEccCCcEEEEeccccccc
Q psy656 284 HNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 284 H~~NIll~~~G~l~HIDFG~if~~ 307 (427)
+..|||++.+ +++=||||-....
T Consensus 134 s~~NIlv~~~-~~~iIDf~qav~~ 156 (188)
T PF01163_consen 134 SEYNILVDDG-KVYIIDFGQAVDS 156 (188)
T ss_dssp STTSEEEETT-CEEE--GTTEEET
T ss_pred ChhhEEeecc-eEEEEecCcceec
Confidence 9999999877 8999999988765
No 130
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=25.75 E-value=34 Score=34.15 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.6
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+.+||||+.+|++.-+|||..-
T Consensus 192 rDlkp~NIll~~~~~~kL~DfG~~~ 216 (353)
T PLN00034 192 RDIKPSNLLINSAKNVKIADFGVSR 216 (353)
T ss_pred cCCCHHHEEEcCCCCEEEcccccce
Confidence 7888999999999999999999753
No 131
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=25.64 E-value=1.1e+02 Score=28.50 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++|||++.+|.+--+|||..-
T Consensus 119 ~dlkp~nill~~~~~~kl~Dfg~~~ 143 (257)
T cd05116 119 RDLAARNVLLVTQHYAKISDFGLSK 143 (257)
T ss_pred cccchhhEEEcCCCeEEECCCcccc
Confidence 7889999999999999999999763
No 132
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=25.37 E-value=40 Score=33.16 Aligned_cols=25 Identities=40% Similarity=0.743 Sum_probs=22.6
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=+++||||+.+|++.=+|||..-
T Consensus 120 ~Dlkp~NIll~~~~~~kL~DfG~~~ 144 (325)
T cd05604 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (325)
T ss_pred cCCCHHHeEECCCCCEEEeecCCcc
Confidence 6888999999999999999999753
No 133
>KOG2464|consensus
Probab=25.24 E-value=48 Score=32.21 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=15.9
Q ss_pred HhhccCCCCCCceeEccCC
Q psy656 276 FLLQIKDRHNGNIMLDKAG 294 (427)
Q Consensus 276 YiLgigDRH~~NIll~~~G 294 (427)
+=+.--|.|.+||||+++|
T Consensus 157 ~~~~hrdl~~gnili~k~~ 175 (246)
T KOG2464|consen 157 LGFEHRDLHLGNILIKKTG 175 (246)
T ss_pred hcccccccCcCcEEEeccc
Confidence 3455689999999999988
No 134
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=25.12 E-value=6.5e+02 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|.+.=+|||..-
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~ 182 (334)
T cd05100 158 RDLAARNVLVTEDNVMKIADFGLAR 182 (334)
T ss_pred cccccceEEEcCCCcEEECCcccce
Confidence 5666899999999999999999764
No 135
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=24.97 E-value=38 Score=31.55 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=23.3
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||-+++||+++.+|++.-+|||...
T Consensus 137 ~~l~p~ni~~~~~~~~~l~d~~~~~ 161 (275)
T cd06608 137 RDIKGQNILLTKNAEVKLVDFGVSA 161 (275)
T ss_pred CCCCHHHEEEccCCeEEECCCccce
Confidence 8999999999999999999999864
No 136
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=24.85 E-value=1.3e+02 Score=30.14 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|.+.=+|||..-
T Consensus 150 ~Dlkp~NIll~~~~~~kL~DfG~a~ 174 (364)
T cd07875 150 RDLKPSNIVVKSDCTLKILDFGLAR 174 (364)
T ss_pred CCCCHHHEEECCCCcEEEEeCCCcc
Confidence 7888999999999999999999864
No 137
>PLN02150 terpene synthase/cyclase family protein
Probab=24.82 E-value=79 Score=26.42 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=21.3
Q ss_pred HHH-HHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy656 378 TIK-LLRARFAPQATDKEAAAFMIGVIRNS 406 (427)
Q Consensus 378 ~i~-~l~~rf~l~~se~ea~~~~~~lI~~s 406 (427)
+|+ ++++. +.|++||.+++.++|+++
T Consensus 9 sIeCYMke~---g~seeeA~~~i~~li~~~ 35 (96)
T PLN02150 9 GVNCYMKQH---GVTKEEAVSELKKMIRDN 35 (96)
T ss_pred HHHHHhccC---CCCHHHHHHHHHHHHHHH
Confidence 344 56653 899999999999999988
No 138
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=24.78 E-value=46 Score=34.71 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=22.9
Q ss_pred hccCCCCCCceeEccCCcEEEEecccccc
Q psy656 278 LQIKDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 278 LgigDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
|=-||=|.+|||++.++ .+=||+-+.+-
T Consensus 194 llHGDl~~gNi~~~~~~-~~~iD~e~~~~ 221 (370)
T TIGR01767 194 LLHGDLHSGSIFVSEHE-TKVIDPEFAFY 221 (370)
T ss_pred eeeccCCcccEEEcCCC-CEEEcCccccc
Confidence 45699999999998765 77899987763
No 139
>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6. Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs
Probab=24.71 E-value=1.6e+02 Score=27.69 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
||=+++|||++.+|.+.=+|||..
T Consensus 128 ~dlkp~nil~~~~~~~kl~dfg~~ 151 (283)
T cd06617 128 RDVKPSNVLINRNGQVKLCDFGIS 151 (283)
T ss_pred CCCCHHHEEECCCCCEEEeecccc
Confidence 899999999999999999999975
No 140
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=24.69 E-value=50 Score=31.27 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
||-+++||+++.+|.+.-+|||..
T Consensus 125 ~dl~p~ni~i~~~~~~~l~dfg~~ 148 (277)
T cd06642 125 RDIKAANVLLSEQGDVKLADFGVA 148 (277)
T ss_pred cCCChheEEEeCCCCEEEcccccc
Confidence 799999999999999999999975
No 141
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=24.58 E-value=1e+02 Score=30.38 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++|||++.+|++.=+|||..-
T Consensus 120 ~dlkp~Nili~~~~~~kL~Dfg~~~ 144 (329)
T cd05588 120 RDLKLDNVLLDAEGHIKLTDYGMCK 144 (329)
T ss_pred cCCCHHHeEECCCCCEEECcCcccc
Confidence 7888999999999999999999764
No 142
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=24.55 E-value=39 Score=33.27 Aligned_cols=24 Identities=46% Similarity=0.832 Sum_probs=22.4
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++|||++.+|++.=+|||..
T Consensus 120 rDlkp~Nili~~~~~~kl~DfG~a 143 (325)
T cd05602 120 RDLKPENILLDSQGHIVLTDFGLC 143 (325)
T ss_pred cCCCHHHeEECCCCCEEEccCCCC
Confidence 799999999999999999999975
No 143
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=24.50 E-value=57 Score=32.18 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=23.1
Q ss_pred hhccCCCCCCceeEccCCcEE-EEeccccc
Q psy656 277 LLQIKDRHNGNIMLDKAGHII-HIDFGFMF 305 (427)
Q Consensus 277 iLgigDRH~~NIll~~~G~l~-HIDFG~if 305 (427)
.|==||=|.+|||++.+|++. =|||+..-
T Consensus 186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~ 215 (276)
T cd05152 186 VLVHGDLHPGHILIDEDARVTGLIDWTEAK 215 (276)
T ss_pred eeEeCCCCCCcEEEeCCCCEEEEECcHhcc
Confidence 444599999999999878764 78999764
No 144
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=24.48 E-value=44 Score=32.86 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++|||++.+|++.=+|||..-
T Consensus 126 ~Dlkp~NIll~~~~~~kL~Dfg~a~ 150 (330)
T cd05601 126 RDIKPENVLIDRTGHIKLADFGSAA 150 (330)
T ss_pred ccCchHheEECCCCCEEeccCCCCe
Confidence 7889999999999999999999763
No 145
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=24.47 E-value=43 Score=32.88 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=22.0
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|++.=+|||..-
T Consensus 120 rDikp~Nill~~~~~~kL~Dfg~~~ 144 (321)
T cd05591 120 RDLKLDNILLDAEGHCKLADFGMCK 144 (321)
T ss_pred cCCCHHHeEECCCCCEEEeecccce
Confidence 6777889999999999999999753
No 146
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=24.45 E-value=1.2e+02 Score=29.63 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=29.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHhcc
Q psy656 41 SFSGPAKAFYEREFEFFAQITDISGKIRPFPKGAERKRACLEELSK 86 (427)
Q Consensus 41 ~~~~~~~~~~~~q~~f~~~l~~is~~lk~~~~~~er~~~~~~~l~~ 86 (427)
.++.+.+++|.+|.+++.+|..+=..=..-....++...+.+-+.+
T Consensus 162 ~l~~ed~~rY~~Q~~~v~~I~~~fE~~~~~d~~~~~~~~i~~lmqe 207 (248)
T PF04614_consen 162 KLSAEDYERYEKQYELVKEICAIFEKPPYDDEDPERREKIMELMQE 207 (248)
T ss_dssp CS-HHHHHHHHHHHHHHHHHHHHHHH--TT--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHH
Confidence 6677889999999999999999887744222223455555544443
No 147
>KOG3133|consensus
Probab=24.30 E-value=1.8e+02 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=24.8
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHHHHhcccC
Q psy656 38 LVASFSGPAKAFYEREFEFFAQITDISGKIR 68 (427)
Q Consensus 38 i~~~~~~~~~~~~~~q~~f~~~l~~is~~lk 68 (427)
=-.+++.+..+.|.+|++++++|.++=..=+
T Consensus 179 n~e~l~~E~~erYqkQ~~~i~~i~~~~e~e~ 209 (267)
T KOG3133|consen 179 NGESLSKEDKERYQKQFELIKEIESVYENEP 209 (267)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3346777889999999999999988866544
No 148
>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain. subfamily of choline kinases
Probab=24.26 E-value=66 Score=29.79 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=24.1
Q ss_pred hhccCCCCCCceeEccC--C---cEEEEecccccc
Q psy656 277 LLQIKDRHNGNIMLDKA--G---HIIHIDFGFMFE 306 (427)
Q Consensus 277 iLgigDRH~~NIll~~~--G---~l~HIDFG~if~ 306 (427)
+|-=||=|.+|||++.+ | .+.-|||..+--
T Consensus 121 vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~ 155 (196)
T smart00587 121 VLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHY 155 (196)
T ss_pred EEeeCCCCccceeeccCCCCCccceEEEecccCCc
Confidence 45559999999999864 4 699999987753
No 149
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=24.23 E-value=39 Score=31.74 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=23.4
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
+|=+++||+++.+|.+.-+|||....
T Consensus 135 ~dl~~~nili~~~~~~~l~Dfg~~~~ 160 (272)
T cd06637 135 RDIKGQNVLLTENAEVKLVDFGVSAQ 160 (272)
T ss_pred CCCCHHHEEECCCCCEEEccCCCcee
Confidence 78899999999999999999998653
No 150
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=24.19 E-value=5.3e+02 Score=24.93 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=31.4
Q ss_pred CCCCCCceeEccCCcEEEEecccccccCCCCCCCCCCCccccHHHHHH
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMV 328 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~~~~PFrLT~~mv~~ 328 (427)
||=+++||+++.+|++.=+|||......+.. .....+.-+.||++..
T Consensus 149 ~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~y~aPE~~~~ 195 (317)
T cd06635 149 RDIKAGNILLTEPGQVKLADFGSASIASPAN-SFVGTPYWMAPEVILA 195 (317)
T ss_pred CCCCcccEEECCCCCEEEecCCCccccCCcc-cccCCccccChhhhhc
Confidence 7889999999999999999999765433211 1111233456777543
No 151
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=24.12 E-value=58 Score=31.12 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=25.9
Q ss_pred hhccCCCCCCceeEccCCcEEEEecccccccCC
Q psy656 277 LLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSP 309 (427)
Q Consensus 277 iLgigDRH~~NIll~~~G~l~HIDFG~if~~~p 309 (427)
+|-=||=|.+|||++.+| +.=|||.+.--.+|
T Consensus 147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gdp 178 (256)
T TIGR02721 147 APLHMDVHAYNLVVTPQG-LKLIDWEYASDGDI 178 (256)
T ss_pred eeecCCCCcCcEEEeCCC-CEEEeccccCcCCH
Confidence 455599999999999887 78999988754444
No 152
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=24.05 E-value=40 Score=33.06 Aligned_cols=25 Identities=40% Similarity=0.743 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=.++||||+.+|++.=+|||+.-
T Consensus 120 ~Dlkp~NIll~~~~~~kl~Dfg~~~ 144 (321)
T cd05603 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (321)
T ss_pred ccCCHHHeEECCCCCEEEccCCCCc
Confidence 7888999999999999999999753
No 153
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=24.01 E-value=1.2e+02 Score=29.86 Aligned_cols=49 Identities=29% Similarity=0.453 Sum_probs=32.1
Q ss_pred CCCCCCceeEccCCcEEEEecccccccCCCCCCC----CCCCccccHHHHHHh
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLG----FEPDIKLTDEMVMVM 329 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~----~~~PFrLT~~mv~~m 329 (427)
+|=.++||||+.+|++.=+|||............ .-.|.=+.||++..+
T Consensus 126 ~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (331)
T cd05597 126 RDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAM 178 (331)
T ss_pred CCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhc
Confidence 7888899999999999999999754322111111 112444677877654
No 154
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase
Probab=23.86 E-value=59 Score=32.82 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=29.5
Q ss_pred HhhccCCCCCCceeEcc-CCcEEEEecccccccCCC
Q psy656 276 FLLQIKDRHNGNIMLDK-AGHIIHIDFGFMFESSPG 310 (427)
Q Consensus 276 YiLgigDRH~~NIll~~-~G~l~HIDFG~if~~~p~ 310 (427)
.++-=+|=|.+|||++. +|++.=|||.|.--.+|+
T Consensus 182 ~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~nd~~ 217 (330)
T PLN02421 182 VVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSYRG 217 (330)
T ss_pred eEEEECCCCcccEEEeCCCCcEEEEcccccCCCccH
Confidence 57788999999999986 689999999998666554
No 155
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=23.84 E-value=1.3e+02 Score=27.87 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
||=+++||+++.+|.+.=+|||....
T Consensus 124 ~dl~p~nili~~~~~~kl~Dfg~~~~ 149 (254)
T cd05083 124 RDLAARNILVSEDGVAKVSDFGLARV 149 (254)
T ss_pred cccCcceEEEcCCCcEEECCCcccee
Confidence 89999999999999999999998753
No 156
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=23.83 E-value=63 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=23.3
Q ss_pred HhhccCCCCCCceeEccCCcEEEEecccc
Q psy656 276 FLLQIKDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 276 YiLgigDRH~~NIll~~~G~l~HIDFG~i 304 (427)
.+|==||=|.+|||++.++.+-=|||+..
T Consensus 163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a 191 (244)
T cd05150 163 LVVTHGDACLPNIIVDPGKFSGFIDLGRL 191 (244)
T ss_pred eEEECCCCCCccEEEeCCcEEEEEEcccc
Confidence 34444999999999999766678999866
No 157
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=23.79 E-value=46 Score=30.75 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||-+++|||++.+|.+.=+|||..-
T Consensus 117 ~dl~p~nili~~~~~~~l~d~g~~~ 141 (250)
T cd05085 117 RDLAARNCLVGENNVLKISDFGMSR 141 (250)
T ss_pred cccChheEEEcCCCeEEECCCccce
Confidence 7999999999999999999999763
No 158
>KOG0593|consensus
Probab=23.78 E-value=45 Score=34.24 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.4
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
.|=-++||||+++|.+=-+||||.=
T Consensus 125 RDIKPENILit~~gvvKLCDFGFAR 149 (396)
T KOG0593|consen 125 RDIKPENILITQNGVVKLCDFGFAR 149 (396)
T ss_pred ccCChhheEEecCCcEEeccchhhH
Confidence 5677899999999999999999963
No 159
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=23.62 E-value=43 Score=33.02 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=.++||||+.+|++.=+|||..-
T Consensus 125 ~Dlkp~NIll~~~~~~kL~Dfg~~~ 149 (350)
T cd05573 125 RDIKPDNILIDADGHIKLADFGLCK 149 (350)
T ss_pred cCCCHHHeEECCCCCEEeecCCCCc
Confidence 6888999999999999999999864
No 160
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=23.51 E-value=1.5e+02 Score=27.46 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCCCCCceeEccCCcEEEEeccccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~~ 307 (427)
||=+++||+++.+|.+.=+|||.....
T Consensus 126 ~di~p~Nili~~~~~~~l~d~g~~~~~ 152 (256)
T cd05039 126 RDLAARNVLVSEDLVAKVSDFGLAKEA 152 (256)
T ss_pred hhcccceEEEeCCCCEEEccccccccc
Confidence 788999999999999999999977543
No 161
>KOG0594|consensus
Probab=23.04 E-value=55 Score=33.51 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
.|=+++||||+++|.+==+|||-.-.
T Consensus 144 RDLKPQNlLi~~~G~lKlaDFGlAra 169 (323)
T KOG0594|consen 144 RDLKPQNLLISSSGVLKLADFGLARA 169 (323)
T ss_pred ccCCcceEEECCCCcEeeeccchHHH
Confidence 68899999999999999999997643
No 162
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=22.79 E-value=53 Score=31.85 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=25.2
Q ss_pred ccCCCCCCceeEccCCcEEEEeccccccc
Q psy656 279 QIKDRHNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 279 gigDRH~~NIll~~~G~l~HIDFG~if~~ 307 (427)
--||=+++||||+.+|++.=+|||.....
T Consensus 125 ~H~dlkp~Nili~~~~~~~l~dfg~~~~~ 153 (316)
T cd05574 125 VYRDLKPENILLHESGHIMLSDFDLSKQS 153 (316)
T ss_pred eccCCChHHeEEcCCCCEEEeecchhhcc
Confidence 34899999999999999999999987543
No 163
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=22.62 E-value=50 Score=32.50 Aligned_cols=25 Identities=48% Similarity=0.697 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++||||+.+|++.=+|||..-
T Consensus 119 rDlkp~NIll~~~~~~kl~DfG~a~ 143 (323)
T cd05571 119 RDLKLENLMLDKDGHIKITDFGLCK 143 (323)
T ss_pred CCCCHHHEEECCCCCEEEeeCCCCc
Confidence 7888999999999999999999753
No 164
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=22.52 E-value=63 Score=26.36 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=6.1
Q ss_pred CCcEEEEec
Q psy656 293 AGHIIHIDF 301 (427)
Q Consensus 293 ~G~l~HIDF 301 (427)
+++++||||
T Consensus 80 ~~~i~HvDF 88 (88)
T PF01386_consen 80 TDKILHVDF 88 (88)
T ss_dssp SSSEEEEEE
T ss_pred CCCeEeccC
Confidence 566777766
No 165
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=22.40 E-value=46 Score=32.86 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|++.=+|||...
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~~~ 144 (327)
T cd05617 120 RDLKLDNVLLDADGHIKLTDYGMCK 144 (327)
T ss_pred cCCCHHHEEEeCCCCEEEeccccce
Confidence 6888999999999999999999764
No 166
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=22.24 E-value=49 Score=31.03 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|++.-+|||..-
T Consensus 136 ~dlkp~Nil~~~~~~~kl~Dfg~~~ 160 (272)
T cd05075 136 RDLAARNCMLNENMNVCVADFGLSK 160 (272)
T ss_pred cccchhheEEcCCCCEEECCCCccc
Confidence 6778999999999999999999754
No 167
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=22.24 E-value=3.2e+02 Score=23.30 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=25.3
Q ss_pred hccCCCCCCceeEcc-CCcEEEEeccccccc
Q psy656 278 LQIKDRHNGNIMLDK-AGHIIHIDFGFMFES 307 (427)
Q Consensus 278 LgigDRH~~NIll~~-~G~l~HIDFG~if~~ 307 (427)
+--||=+.+||+++. ++++.=+|||..-..
T Consensus 113 ~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~ 143 (215)
T cd00180 113 IIHRDLKPENILLDSDNGKVKLADFGLSKLL 143 (215)
T ss_pred eeccCCCHhhEEEeCCCCcEEEecCCceEEc
Confidence 345799999999999 999999999987533
No 168
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=22.17 E-value=44 Score=32.10 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=22.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|++.=+|||..-
T Consensus 127 ~dlkp~Nil~~~~~~~kl~DfG~~~ 151 (288)
T cd07871 127 RDLKPQNLLINEKGELKLADFGLAR 151 (288)
T ss_pred CCCCHHHEEECCCCCEEECcCccee
Confidence 7888999999999999999999764
No 169
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=22.05 E-value=57 Score=30.54 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|-+++|||++.+|.+.=+|||..-
T Consensus 126 ~dl~~~Nill~~~~~~~l~dfg~~~ 150 (260)
T cd05069 126 RDLRAANILVGDNLVCKIADFGLAR 150 (260)
T ss_pred cccCcceEEEcCCCeEEECCCccce
Confidence 7999999999999999999999763
No 170
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=22.01 E-value=72 Score=31.51 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=28.8
Q ss_pred HhhccCCCCCCceeEccCCcEEEEecccccccCC
Q psy656 276 FLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSP 309 (427)
Q Consensus 276 YiLgigDRH~~NIll~~~G~l~HIDFG~if~~~p 309 (427)
+++.=+|=|.+|++.+..|.++=|||-+.--.+|
T Consensus 153 ~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D~ 186 (269)
T COG0510 153 LVPCHNDLNPGNLLLTDKGGLFLIDWEYAGLNDP 186 (269)
T ss_pred eeeecCCCCccceEEcCCCcEEEEecccCCCccH
Confidence 5666789999999999999999999988765444
No 171
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=21.97 E-value=57 Score=30.35 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.8
Q ss_pred cCCCCCCceeEccCCcEEEEecccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
-||-+++||||+.+|.+.=+|||....
T Consensus 126 h~di~p~nili~~~~~~~l~d~g~~~~ 152 (261)
T cd05034 126 HRDLAARNILVGENLVCKIADFGLARL 152 (261)
T ss_pred cCCcchheEEEcCCCCEEECcccccee
Confidence 489999999999999999999997653
No 172
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=21.96 E-value=56 Score=30.33 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++||+++.+|++.-+|||..-
T Consensus 124 ~dl~p~ni~i~~~~~~~l~d~g~~~ 148 (256)
T cd05112 124 RDLAARNCLVGENQVVKVSDFGMTR 148 (256)
T ss_pred cccccceEEEcCCCeEEECCCccee
Confidence 7999999999999999999999754
No 173
>PRK05114 hypothetical protein; Provisional
Probab=21.93 E-value=2.1e+02 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=33.3
Q ss_pred CCCCCCch----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q psy656 369 TGLPCFRG----QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLN 409 (427)
Q Consensus 369 ~~lp~~~~----~~i~~l~~rf~l~~se~ea~~~~~~lI~~s~~~ 409 (427)
+++|.++. .+++.+++=..-++|.-||...+.+-|++....
T Consensus 3 ~~lp~LtHeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 3 AGLPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhc
Confidence 48898974 367777777788999999999999999987653
No 174
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=21.89 E-value=45 Score=32.16 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++|||++.+|.+.=+|||...
T Consensus 128 ~dlkp~Nil~~~~~~~kl~dfg~~~ 152 (301)
T cd07873 128 RDLKPQNLLINERGELKLADFGLAR 152 (301)
T ss_pred CCCCHHHEEECCCCcEEECcCcchh
Confidence 7888999999999999999999864
No 175
>PHA03212 serine/threonine kinase US3; Provisional
Probab=21.88 E-value=1.6e+02 Score=30.25 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.2
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++|||++.+|++.=+|||..
T Consensus 206 rDiKP~NIll~~~~~vkL~DFG~a 229 (391)
T PHA03212 206 RDIKAENIFINHPGDVCLGDFGAA 229 (391)
T ss_pred CCCChHhEEEcCCCCEEEEeCCcc
Confidence 688899999999999999999975
No 176
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=21.81 E-value=1.8e+02 Score=26.67 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=24.9
Q ss_pred ccCCCCCCceeEccCCcEEEEeccccccc
Q psy656 279 QIKDRHNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 279 gigDRH~~NIll~~~G~l~HIDFG~if~~ 307 (427)
--||=+++||+++.+|.+.=+|||.....
T Consensus 121 ~H~dl~~~ni~~~~~~~~~l~dfg~~~~~ 149 (256)
T cd06612 121 IHRDIKAGNILLNEEGQAKLADFGVSGQL 149 (256)
T ss_pred ccCCCCcceEEECCCCcEEEcccccchhc
Confidence 34899999999999999999999986543
No 177
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=21.71 E-value=51 Score=33.06 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=22.2
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++||||+.+|++.=+|||..
T Consensus 125 rDlKp~NILi~~~~~vkL~DFGla 148 (363)
T cd05628 125 RDIKPDNLLLDSKGHVKLSDFGLC 148 (363)
T ss_pred cCCCHHHeEECCCCCEEEeeccCc
Confidence 788899999999999999999975
No 178
>KOG0028|consensus
Probab=21.65 E-value=4.5e+02 Score=24.52 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHHHhhchHHHHHHHHHHhhCCCCCCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy656 337 PFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRGQTIKLLRARFAPQATDKEAAAFMIGVIRNS 406 (427)
Q Consensus 337 ~f~~F~~~c~~a~~~lR~~~~~ii~ll~lm~~~~lp~~~~~~i~~l~~rf~l~~se~ea~~~~~~lI~~s 406 (427)
.|..|+..+... +..|...+.|...|.++=.+.---++...++.|..+|..+++|+| +..+|+++
T Consensus 87 ~fe~f~~~mt~k-~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~E----l~eMIeEA 151 (172)
T KOG0028|consen 87 TFEDFRRVMTVK-LGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEE----LMEMIEEA 151 (172)
T ss_pred chHHHHHHHHHH-HhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHH----HHHHHHHh
Confidence 477777766554 446778888888888775444334555788899999999999999 56667766
No 179
>PRK12396 5-methylribose kinase; Reviewed
Probab=21.64 E-value=4.4e+02 Score=28.00 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.6
Q ss_pred hccCCCCCCceeEccCCcEEEEeccccc
Q psy656 278 LQIKDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 278 LgigDRH~~NIll~~~G~l~HIDFG~if 305 (427)
|==||=|.+|||++.++ ..=||.-|.|
T Consensus 229 LlHGDlHtGSI~v~~~~-~kvIDpEFAf 255 (409)
T PRK12396 229 LIHGDLHTGSVFVKNDS-TKVIDPEFAF 255 (409)
T ss_pred hccCcCCCCCEEecCCc-eEEEcccccc
Confidence 34599999999999865 6668877766
No 180
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=21.54 E-value=1.5e+02 Score=28.53 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++||+++.+|++.=+|||..-
T Consensus 162 ~dlkp~Nill~~~~~~kl~DfG~~~ 186 (304)
T cd05096 162 RDLATRNCLVGENLTIKIADFGMSR 186 (304)
T ss_pred cCcchhheEEcCCccEEECCCccce
Confidence 7889999999999999999999764
No 181
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=21.43 E-value=1.3e+02 Score=27.23 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=25.6
Q ss_pred hccCCCCCCceeEccCCcEEEEeccccccc
Q psy656 278 LQIKDRHNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 278 LgigDRH~~NIll~~~G~l~HIDFG~if~~ 307 (427)
+--||-+++||+++.+|.+.=+|||+....
T Consensus 122 ~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~ 151 (260)
T cd06606 122 IVHRDIKGANILVDSDGVVKLADFGCAKRL 151 (260)
T ss_pred ccccCCCHHHEEEcCCCCEEEcccccEEec
Confidence 345899999999999999999999987544
No 182
>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm
Probab=21.39 E-value=1.9e+02 Score=27.36 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred CCCCCCceeEcc-CCcEEEEecccc
Q psy656 281 KDRHNGNIMLDK-AGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~-~G~l~HIDFG~i 304 (427)
+|-+++|||++. +|.+-=+|||..
T Consensus 134 ~dl~~~nil~~~~~~~~kl~dfg~~ 158 (295)
T cd07837 134 RDLKPQNLLVDKQKGLLKIADLGLG 158 (295)
T ss_pred cCCChHHEEEecCCCeEEEeecccc
Confidence 788999999999 898888999964
No 183
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=21.29 E-value=4.2e+02 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEecccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFE 306 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~ 306 (427)
+|=.++|||++.+|.+.=+|||....
T Consensus 124 ~dlkp~Nill~~~~~~kl~Dfg~~~~ 149 (287)
T cd07848 124 RDIKPENLLISHNDVLKLCDFGFARN 149 (287)
T ss_pred CCCCHHHEEEcCCCcEEEeeccCccc
Confidence 67788999999999999999998654
No 184
>PHA02882 putative serine/threonine kinase; Provisional
Probab=21.15 E-value=62 Score=31.28 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.4
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++|||++.+|++.=+|||..
T Consensus 150 rDiKp~Nill~~~~~~~l~DFGla 173 (294)
T PHA02882 150 GDIKPENIMVDGNNRGYIIDYGIA 173 (294)
T ss_pred CCCCHHHEEEcCCCcEEEEEcCCc
Confidence 677788999999999999999975
No 185
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=21.00 E-value=1.3e+02 Score=29.85 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=+++|||++.+|.+.=+|||..-
T Consensus 147 rDlkp~NIl~~~~~~~kl~Dfg~a~ 171 (359)
T cd07876 147 RDLKPSNIVVKSDCTLKILDFGLAR 171 (359)
T ss_pred CCCCHHHEEECCCCCEEEecCCCcc
Confidence 6888999999999999999999763
No 186
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=20.76 E-value=51 Score=31.99 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.6
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=+++|||++.+|.+.=+|||..-
T Consensus 128 ~dlkp~Nill~~~~~~kl~Dfg~~~ 152 (309)
T cd07872 128 RDLKPQNLLINERGELKLADFGLAR 152 (309)
T ss_pred CCCCHHHEEECCCCCEEECccccce
Confidence 7888999999999999999999763
No 187
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=20.64 E-value=57 Score=30.64 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=24.4
Q ss_pred cCCCCCCceeEccCCcEEEEeccccccc
Q psy656 280 IKDRHNGNIMLDKAGHIIHIDFGFMFES 307 (427)
Q Consensus 280 igDRH~~NIll~~~G~l~HIDFG~if~~ 307 (427)
=||-+++||+++.+|.+.=+|||.....
T Consensus 121 H~dl~p~nili~~~~~~~l~df~~~~~~ 148 (283)
T cd05118 121 HRDLKPENLLINTEGVLKLADFGLARSF 148 (283)
T ss_pred ecCcCHHHEEECCCCcEEEeeeeeeEec
Confidence 3899999999999999999999987544
No 188
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=20.47 E-value=1.1e+02 Score=28.30 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
||=.++|||++.+|++.=+|||...
T Consensus 124 ~dl~p~nili~~~~~~~l~dfg~~~ 148 (255)
T cd08219 124 RDIKSKNIFLTQNGKVKLGDFGSAR 148 (255)
T ss_pred CCCCcceEEECCCCcEEEcccCcce
Confidence 7888999999999999999999864
No 189
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=20.47 E-value=58 Score=33.06 Aligned_cols=50 Identities=26% Similarity=0.423 Sum_probs=32.9
Q ss_pred CCCCCCceeEccCCcEEEEecccccccCCCCCCC----CCCCccccHHHHHHhC
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLG----FEPDIKLTDEMVMVMG 330 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if~~~p~~~~~----~~~PFrLT~~mv~~mG 330 (427)
+|=.++||||+.+|++.=+|||........+... .-.|.=+.||++...+
T Consensus 166 rDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~ 219 (370)
T cd05621 166 RDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQG 219 (370)
T ss_pred cCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccC
Confidence 6788899999999999999999875432211100 1124446677776544
No 190
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=20.45 E-value=73 Score=31.33 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|.+.=+|||..-
T Consensus 198 rDiKp~Nil~~~~~~~kl~DfG~a~ 222 (338)
T cd05102 198 RDLAARNILLSENNVVKICDFGLAR 222 (338)
T ss_pred CCCccceEEEcCCCcEEEeeccccc
Confidence 6778999999999999999999753
No 191
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=20.38 E-value=54 Score=32.25 Aligned_cols=24 Identities=46% Similarity=0.768 Sum_probs=22.2
Q ss_pred CCCCCCceeEccCCcEEEEecccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFM 304 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~i 304 (427)
+|=.++||||+.+|++.=+|||..
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~a 143 (330)
T cd05586 120 RDLKPENILLDATGHIALCDFGLS 143 (330)
T ss_pred ccCCHHHeEECCCCCEEEecCCcC
Confidence 788899999999999999999975
No 192
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=20.19 E-value=54 Score=32.23 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCcEEEEeccccc
Q psy656 281 KDRHNGNIMLDKAGHIIHIDFGFMF 305 (427)
Q Consensus 281 gDRH~~NIll~~~G~l~HIDFG~if 305 (427)
+|=.++|||++.+|++.-+|||..-
T Consensus 120 rdikp~Nil~~~~~~~kl~Dfg~~~ 144 (316)
T cd05619 120 RDLKLDNILLDTDGHIKIADFGMCK 144 (316)
T ss_pred CCCCHHHEEECCCCCEEEccCCcce
Confidence 7888999999999999999999754
Done!