RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy656
(427 letters)
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 351 bits (902), Expect = e-112
Identities = 96/423 (22%), Positives = 174/423 (41%), Gaps = 51/423 (12%)
Query: 22 EKDPILYDTLDSLVQALVASFSGPAKAFYEREFEFFAQITDISGKIRPFP--------KG 73
+ +++A + + ++ + + ++ I+ +
Sbjct: 563 AQSRHYQQRFAVILEAYLRGCGTAMLHDFTQQVQVIDMLQKVTIDIKSLSAEKYDVSSQV 622
Query: 74 AERKRACLEELSKIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGI 133
+ + LE L + + +P +P + M S K P F+
Sbjct: 623 ISQLKQKLENLQNLNLPQSFRVPYDPGLKAGALVIEKCKVMASK-KKPLWLEFKCADPTA 681
Query: 134 NELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIF 193
E + + IFK GDD+RQDML LQ++ I
Sbjct: 682 LSNETIGI-------------------------------IFKHGDDLRQDMLILQILRIM 710
Query: 194 KNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGM---YEYFIKTYG 250
+++++ LDL L PY ++T G+IE V DA + ++ + T + + +
Sbjct: 711 ESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLSHWL 770
Query: 251 DE---TSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFES 307
E ++FQ A FV S A Y V F+L I DRHN NIM+ + G++ HIDFG + +
Sbjct: 771 KEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISETGNLFHIDFGHILGN 830
Query: 308 SPG-GNLGFEP-DIKLTDEMVMVMGG--KIEAAPFRWFMELCVQAFLAMRPYQESIISLV 363
+ E LT + + VMG K + F+ F ++CV+A+LA+R + +I L
Sbjct: 831 YKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILF 890
Query: 364 SLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQ 422
S+ML TG+P + I+ +R ++++A + + I T +++ +
Sbjct: 891 SMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAKKYFLDQIEVCRDKGWTVQFNWFLHLV 950
Query: 423 NQI 425
I
Sbjct: 951 LGI 953
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 336 bits (862), Expect = e-110
Identities = 100/420 (23%), Positives = 173/420 (41%), Gaps = 60/420 (14%)
Query: 17 DIDMTEKDPILYDTLDSLVQALVASFSGPAK------AFYEREFEFFAQITDISGKIRPF 70
D D ++DP ++ ++++ + K + + F ++ + ++
Sbjct: 238 DQDTQQRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQRE 297
Query: 71 PKGAERKRACL------EELSKIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLA 124
++K L E + LP P+ + I + T +SA P
Sbjct: 298 SGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEPQVKIRGIIPETATLFKSALM-PAQL 356
Query: 125 RFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDM 184
F+ + IFK GDD+RQD
Sbjct: 357 FFKTE------------------------------------DGGKYPVIFKHGDDLRQDQ 380
Query: 185 LALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEY 244
L LQ+IS+ + ++ LDL L PY+V+ATS G ++ + + L T+ + +
Sbjct: 381 LILQIISLMDKLLRKENLDLKLTPYKVLATSTKHGFMQFIQSVPVAEVL--DTEGSIQNF 438
Query: 245 FIKTYGDE--TSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFG 302
F K E + +V+S A Y VI ++L + DRH N++L K G + HIDFG
Sbjct: 439 FRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLTKTGKLFHIDFG 498
Query: 303 FMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQESIISL 362
++ P P +KL EMV MGG ++ ++ F + C AFL +R Y I++L
Sbjct: 499 YILGRDPK---PLPPPMKLNKEMVEGMGGT-QSEQYQEFRKQCYTAFLHLRRYSNLILNL 554
Query: 363 VSLMLDTGLPCFRG---QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYLQ 419
SLM+D +P +T+K ++ +F +D+EA +M +I S + +
Sbjct: 555 FSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHYMQSLIDESVHALFAAVVEQIH 614
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase;
2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A*
2x6j_A* 2x6k_A*
Length = 696
Score = 335 bits (860), Expect = e-109
Identities = 90/428 (21%), Positives = 159/428 (37%), Gaps = 61/428 (14%)
Query: 13 EASNDIDMTEKDPILYDTLDSLVQALVASFSGPAKAFYE------REFEFFAQITDISGK 66
E + ++D +D +++ + ++ F ++ +
Sbjct: 305 EVEEVESVRKQDERAHDMYAMVLKMFLKVLENGNFNLRGIFYNLRKQRRFIDELVKLVKL 364
Query: 67 IRPFPKGAERKRACL--------EELSKIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAA 118
+ P +K P +PE + I + +SA
Sbjct: 365 VAKEPGNRNKKTEKFQKLLAEQDMFKVNFTNFEPIPFPLDPEIYITKIVPMRTSLFKSAL 424
Query: 119 KAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGD 178
P F AAIFK GD
Sbjct: 425 M-PAKLTFVTSIAH-----------------------------------HEYAAIFKHGD 448
Query: 179 DVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTD 238
D+RQD L LQ+I++ + ++ LDL L PY+V+ATS G ++ V + L R+
Sbjct: 449 DLRQDQLILQMITLMDKLLRRENLDLKLTPYKVLATSSKHGFLQYVDSCTVAEVLAREG- 507
Query: 239 IGMYEYFIKTYGDETSKEF--QNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHI 296
++ +F K + + +++S A Y VI +LL + DRH N++L G +
Sbjct: 508 -NIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLTTNGKL 566
Query: 297 IHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWFMELCVQAFLAMRPYQ 356
HIDFG++ P P +KL+ EMV MGG + F + C A+L +R +
Sbjct: 567 FHIDFGYILGRDPK---PMPPPMKLSKEMVEAMGGI-SSEHHHEFRKQCYTAYLHLRRHA 622
Query: 357 ESIISLVSLMLDTGLPCFRG---QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTR 413
+++L SLM+D +P + +K + TD+EA + ++ S
Sbjct: 623 NVMLNLFSLMVDATVPDIALEPDKAVKKVEENLQLGLTDEEAVQHLQSLLDVSITAVMPA 682
Query: 414 AYDYLQYY 421
+ + +
Sbjct: 683 LVEQIHRF 690
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol
3,4,5- triphosphate, wortmannin, H1047R, ATP-binding,
disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens}
PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 339 bits (869), Expect = e-107
Identities = 93/427 (21%), Positives = 166/427 (38%), Gaps = 53/427 (12%)
Query: 20 MTEKDPILYDTLDSLVQALVASFSGPAKAFYEREFEFFAQITDISGKIRPFPKGAERK-- 77
+E L+ G R+ E ++ +++ ++ K +K
Sbjct: 695 KSEMHNKTVSQRFGLLLESYCRACGMYLKHLNRQVEAMEKLINLTDILKQEKKDETQKVQ 754
Query: 78 ----RACLEELSKIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGI 133
+ + G P NP + ++ M SA + +L
Sbjct: 755 MKFLVEQMRRPDFMDALQGFLSPLNPAHQLGNLRLEECRIMSSAKRPLWLNWENPDIMSE 814
Query: 134 NELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIF 193
+ IFK GDD+RQDML LQ+I I
Sbjct: 815 LLFQ-------------------------------NNEIIFKNGDDLRQDMLTLQIIRIM 843
Query: 194 KNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQL----GRQTDIGMYEYFIKTY 249
+N++Q GLDL + PY ++ G+IE V ++ + Q+ G + + + + +
Sbjct: 844 ENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTLHQW 903
Query: 250 GDE--TSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFES 307
+ + + A F RS A Y V F+L I DRHN NIM+ G + HIDFG +
Sbjct: 904 LKDKNKGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDFGHFLDH 963
Query: 308 SPGGNLGFEPD---IKLTDEMVMVMGGKIEAAP----FRWFMELCVQAFLAMRPYQESII 360
G++ + LT + ++V+ + F F E+C +A+LA+R + I
Sbjct: 964 KK-KKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFI 1022
Query: 361 SLVSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLN-FRTRAYDYL 418
+L S+ML +G+P + I +R A T++EA + + + ++ + T+
Sbjct: 1023 NLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQEALEYFMKQMNDARHGGWTTKMDWIF 1082
Query: 419 QYYQNQI 425
+
Sbjct: 1083 HTIKQHA 1089
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 326 bits (835), Expect = e-102
Identities = 88/427 (20%), Positives = 155/427 (36%), Gaps = 58/427 (13%)
Query: 20 MTEKDPILYDTLDSLVQALVASFSGPAKAFYEREFEFFAQITDISGKIR------PFPKG 73
+E ++ S ++ E ++ ++ I+ KG
Sbjct: 701 RSEVHTPAVSVQFGVILEAYCRGSVGHMKVLSKQVEALNKLKTLNSLIKLNAVKLSRAKG 760
Query: 74 AERKRACLEELSKIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGI 133
E CL++ + + P NP ++ ++ M S K +L
Sbjct: 761 KEAMHTCLKQSAYREALSDLQSPLNPCVILSELYVEKCKYMDSKMKPLWLVYSSRAFGE- 819
Query: 134 NELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIF 193
IFK GDD+RQDML LQ++ +
Sbjct: 820 ----------------------------------DSVGVIFKNGDDLRQDMLTLQMLRLM 845
Query: 194 KNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYEYFIK------ 247
++++ GLDL + PY +AT G+IE V +++ + +
Sbjct: 846 DLLWKEAGLDLRMLPYGCLATGDRSGLIEVVSTSETIADIQLNSSNVAATAAFNKDALLN 905
Query: 248 -TYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFE 306
+ + A F S A Y V ++L I DRH+ NIM+ K G + HIDFG +
Sbjct: 906 WLKEYNSGDDLDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVKKTGQLFHIDFGHILG 965
Query: 307 SSPG-GNLGFEP-DIKLTDEMVMVM--GGKIEAAPFRWFMELCVQAFLAMRPYQESIISL 362
+ + E LT + + V+ G F F + C A+L +R + I+L
Sbjct: 966 NFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQCCEDAYLILRRHGNLFITL 1025
Query: 363 VSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLNFRTRAYDYL--- 418
+LML GLP + I+ L+ A +++EA + T +++
Sbjct: 1026 FALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFKQKFDEALRESWTTKVNWMAHT 1085
Query: 419 --QYYQN 423
+ Y++
Sbjct: 1086 VRKDYRS 1092
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 319 bits (819), Expect = e-100
Identities = 83/423 (19%), Positives = 149/423 (35%), Gaps = 48/423 (11%)
Query: 15 SNDIDMTEKDPILYDTLDSLVQALVASFSGPAKAFYE-REFEFFAQITDISGKIRPFPKG 73
+++ + +++ + K + + +S + P+
Sbjct: 548 RSEMHVPSVALRFGLIMEAYCRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQT 607
Query: 74 AERKRACLEELSKIKVRPGCYLPSNPEAVVLDIDYNSGTPMQSAAKAPYLARFRVKRCGI 133
E C+ + + ++ P +P ++ ++ T M S K P + + G
Sbjct: 608 KEMMHMCMRQETYMEALSHLQSPLDPSTLLEEVCVEQCTFMDSKMK-PLWIMYSSEEAGS 666
Query: 134 NELEQMAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIF 193
+ IFK GDD+RQDML LQ+I +
Sbjct: 667 AGNVGI---------------------------------IFKNGDDLRQDMLTLQMIQLM 693
Query: 194 KNVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQ-------TDIGMYEYFI 246
+++Q GLDL + PY + T G+IE V + + +
Sbjct: 694 DVLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNKDALLN 753
Query: 247 KTYGDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDKAGHIIHIDFGFMFE 306
+ A F S A Y V ++L I DRH+ NIM+ ++G + HIDFG
Sbjct: 754 WLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLG 813
Query: 307 SSPG-GNLGFE-PDIKLTDEMVMVM--GGKIEAAPFRWFMELCVQAFLAMRPYQESIISL 362
+ + E LT + V V+ G + F F C +A+ +R + + L
Sbjct: 814 NFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGLLFLHL 873
Query: 363 VSLMLDTGLPCFRG-QTIKLLRARFAPQATDKEAAAFMIGVIRNSFLN-FRTRAYDYLQY 420
+LM GLP + I+ L+ A T++EA + ++T+
Sbjct: 874 FALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWLAHN 933
Query: 421 YQN 423
Sbjct: 934 VSK 936
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 5e-09
Identities = 67/500 (13%), Positives = 146/500 (29%), Gaps = 147/500 (29%)
Query: 14 ASNDID--MTEKDPI-----LYDTL----DSLVQA------------LVASFSGPAKAFY 50
+ +ID + KD + L+ TL + +VQ L++ +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 51 EREFEFFAQITDISGKIRPFPKG-AERK------RACLEELSKIKVRPGCYLPSNPEAVV 103
+ Q + + F K R R L EL RP V+
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-----RPAKN-------VL 154
Query: 104 LDIDYNSGTPMQSAAK----APYLARFRVKRCGINELEQMAMAICERDDD---------- 149
+D G + + K ++V+ ++ + + C +
Sbjct: 155 ID-----G--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 150 -------EEHDHQL---VRANS-KDKIMETWQAAIFK----VGDDVRQDMLALQVISIFK 194
DH +R +S + ++ ++ ++ V +V Q+ + + F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QN---AKAWNAFN 263
Query: 195 NVFQQVGLDLYLFPYRVVATSPGCGVIECVPDAKSRDQLGRQTDIGMYE-----YFIKTY 249
+++ T+ V + + A + + + +K
Sbjct: 264 ------------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 250 GDETSKEFQNARRNFVRSMAAYSVIGFLLQIKDRHNGN---IMLDKAGHIIHI------- 299
+ + S+I ++ N + DK II
Sbjct: 312 DCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 300 -DFGFMFESSPGGNLG-FEPDIKLTDEMVMVM--GGKIEAAPFRWFMELCVQAFLAMRPY 355
++ MF+ L F P + +++ + I++ + + L +
Sbjct: 369 AEYRKMFDR-----LSVFPPSAHIP-TILLSLIWFDVIKSDVMV-VVNKLHKYSLVEKQP 421
Query: 356 QESIISLVSLMLDTGLPCFRGQTI--KLLRARFAPQATDKEAAA---------FMIG--- 401
+ES IS+ S+ L+ + + ++ P+ D + IG
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 402 ----------VIRNSFLNFR 411
+ R FL+FR
Sbjct: 482 KNIEHPERMTLFRMVFLDFR 501
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 9e-05
Identities = 74/480 (15%), Positives = 137/480 (28%), Gaps = 163/480 (33%)
Query: 2 NSVHLNSCPA-LEASNDIDMTEKDPIL--YDTLDSLVQ---------ALV-ASFSGPAKA 48
N +H + A L ND + + ++ Y T + + AL A G A+
Sbjct: 99 NDIH--ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 49 FYEREF-------EFFAQITDISGKIRPFPKGA-ERKRACLEELSKIKVRPGCYLPSNPE 100
F ++F ++ D+ + L EL + +
Sbjct: 157 VAI--FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--- 211
Query: 101 AVVLDI----DYNSGTPMQSAAKAPYLARFRVKRCGINELEQMA--MAICERDDDEEHDH 154
L+I + S TP YL + C + + Q+A + +
Sbjct: 212 --GLNILEWLENPSNTP-----DKDYLLSIPIS-CPLIGVIQLAHYVVTAKLLG---FTP 260
Query: 155 QLVRAN-------SKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVF------QQVG 201
+R+ S+ + A D + V +F +
Sbjct: 261 GELRSYLKGATGHSQGLVT----AVAIAETDS-WESFFVS-VRKAITVLFFIGVRCYEAY 314
Query: 202 LDLYLFPYRVVATSPGCGVIECVP-------DAKSRDQLGRQTDIGMYEYFIKTYGDETS 254
+ L P ++ S E VP + +++Q+ Q + ++T+
Sbjct: 315 PNTSLPP-SILEDSLENN--EGVPSPMLSISNL-TQEQV--QDYV-----------NKTN 357
Query: 255 KEFQ----------NARRNFVRSMAAYSVIGFLLQIK----------------DR----- 283
N +N V S S+ G L ++ +R
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 284 ----------HNGNIMLDKAGHIIHIDF---GFMFESS----P------GGNL-GFEPDI 319
H + +L A +I+ D F + P G +L I
Sbjct: 418 NRFLPVASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 320 --KLTDEMVMVMGGKIEAAPFRWFMELCVQA----FLAMRPYQESIIS-LVSLMLD-TGL 371
++ D ++ + P +W E Q L P S + L D TG+
Sbjct: 476 SERIVD-CIIRL-------PVKW--ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Score = 42.3 bits (99), Expect = 3e-04
Identities = 40/292 (13%), Positives = 70/292 (23%), Gaps = 120/292 (41%)
Query: 139 MAMAICERDDDEEHDHQLVRANSKDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQ 198
M M + S + W A D+ +D ++ I N
Sbjct: 1631 MGMDL--------------YKTS-KAAQDVWNRA-----DNHFKDTYGFSILDIVIN--- 1667
Query: 199 QVGLDLYLFPYRVVATSPGCG-----------VIECVPDAKSR-----DQLGRQTDIGMY 242
P + G + E + D K + ++ + +
Sbjct: 1668 --------NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 243 EYFIKTYGDE-----TSKEF-QNARRNFVRSMAAYSVIGFLLQIKDRHNGNIMLDK--AG 294
++ T +F Q A + AA+ + + G I D AG
Sbjct: 1720 R------SEKGLLSAT--QFTQPAL--TLMEKAAFEDL--------KSKGLIPADATFAG 1761
Query: 295 HIIHIDFGFMFES--------SPGGNLGFEPDIKLT-------------DEMVMVMGGKI 333
H S S + E +++ DE+ G I
Sbjct: 1762 H-----------SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 334 EAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPC------FRGQTI 379
P R +A + ++ V TG Q
Sbjct: 1811 AINPGRVAASFSQEAL-------QYVVERVG--KRTGWLVEIVNYNVENQQY 1853
Score = 40.8 bits (95), Expect = 8e-04
Identities = 38/220 (17%), Positives = 61/220 (27%), Gaps = 80/220 (36%)
Query: 232 QLGRQTDIGM----YEYFIKTYGDETSKE-FQNARRNFVRSMAAYSVIGF-LLQI----- 280
Q G Q GM Y+ + +++ + A +F Y GF +L I
Sbjct: 1624 Q-GSQE-QGMGMDLYKTS------KAAQDVWNRADNHF---KDTY---GFSILDIVINNP 1669
Query: 281 --KDRHNGNIMLDKAGHIIHIDFGFM-FESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAP 337
H G + G I ++ M FE+ G L E K +E +
Sbjct: 1670 VNLTIHFG----GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE-------HSTSYT 1718
Query: 338 FRWFMELCVQ------AFLAMRPYQESIISLVSLMLDTGL----PCFRG----------- 376
FR L A M + + GL F G
Sbjct: 1719 FRSEKGLLSATQFTQPALTLME------KAAFEDLKSKGLIPADATFAGHSLGEYAALAS 1772
Query: 377 --------QTIKLLRAR------FAPQATDKEAAAFMIGV 402
++++ R P+ + MI +
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 36.9 bits (85), Expect = 0.011
Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 19/154 (12%)
Query: 164 KIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIEC 223
+ + +++++L L+++ KN Q ++FP+ +V +I
Sbjct: 104 HVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV 163
Query: 224 VPDAKSRDQLGR-------QTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGF 276
D + L R Q+++ + + ++ +AR + ++
Sbjct: 164 RLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVI--RLLAS 221
Query: 277 LLQ-------IKDRHNGNIMLDKAGHIIHIDFGF 303
L ++ +I+LD+ G + F
Sbjct: 222 LHHYGLVHTYLRP---VDIVLDQRGGVFLTGFEH 252
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.14
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 377 QTIKLLRARFAPQATDKEAAAFMI 400
Q +K L+A A D A A I
Sbjct: 20 QALKKLQASLKLYADD-SAPALAI 42
Score = 28.4 bits (62), Expect = 2.8
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 22 EKDPILYDTLDSLVQALVASFSGPA---KAFYE 51
EK + L + ++ L A S PA KA E
Sbjct: 18 EKQAL--KKLQASLK-LYADDSAPALAIKATME 47
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 32.9 bits (76), Expect = 0.17
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 287 NIMLDKAGHIIHIDFGF 303
NI+LDK GHI DFGF
Sbjct: 136 NILLDKNGHIKITDFGF 152
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 32.6 bits (75), Expect = 0.20
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 287 NIMLDKAGHIIHIDFGF 303
N+++D+ G+I DFGF
Sbjct: 171 NLLIDQQGYIQVTDFGF 187
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 32.7 bits (75), Expect = 0.22
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 287 NIMLDKAGHIIHIDFGFMFESSPGGN 312
N++LDK+GH+ DFG + + G
Sbjct: 198 NMLLDKSGHLKLADFGTCMKMNKEGM 223
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 31.8 bits (73), Expect = 0.34
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 287 NIMLDKAGHIIHIDFGF 303
NI+L++ HI DFG
Sbjct: 160 NILLNEDMHIQITDFGT 176
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 31.9 bits (72), Expect = 0.40
Identities = 22/157 (14%), Positives = 54/157 (34%), Gaps = 25/157 (15%)
Query: 164 KIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVIEC 223
+ + +++++L L+++ KN Q ++FP+ +V +I
Sbjct: 109 HVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV 168
Query: 224 VPDAKSRDQLGR-------QTDIGMYEYFIKTYGDETSKEFQNARRNFVRSMAAYSVIGF 276
D + L R Q+++ + + ++ +AR + ++
Sbjct: 169 RLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVI--RLLAS 226
Query: 277 LLQIKDRHN----------GNIMLDKAGHIIHIDFGF 303
L H+ +I+LD+ G + F
Sbjct: 227 L------HHYGLVHTYLRPVDIVLDQRGGVFLTGFEH 257
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 31.7 bits (72), Expect = 0.46
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 287 NIMLDKAGHIIHIDFGF 303
NI++D GHI DFG
Sbjct: 205 NILMDMNGHIRLADFGS 221
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 31.4 bits (72), Expect = 0.60
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 287 NIMLDKAGHIIHIDFG 302
NI+LD+ GHI DFG
Sbjct: 156 NILLDEEGHIKLTDFG 171
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 31.4 bits (71), Expect = 0.61
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 287 NIMLDKAGHIIHIDFGFMFESSPGGNLGF 315
NI+LD+ GH+ D G + S
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPHAS 350
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 31.1 bits (71), Expect = 0.61
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 287 NIMLDKAGHIIHIDFGF 303
NI+LD GH++ DFG
Sbjct: 189 NILLDSNGHVVLTDFGL 205
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 31.0 bits (71), Expect = 0.66
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 287 NIMLDKAGHIIHIDFG 302
N+MLDK GHI DFG
Sbjct: 135 NLMLDKDGHIKITDFG 150
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 31.0 bits (71), Expect = 0.69
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 287 NIMLDKAGHIIHIDFG 302
NIML+ GH+ DFG
Sbjct: 151 NIMLNHQGHVKLTDFG 166
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 30.8 bits (70), Expect = 0.79
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 287 NIMLDKAGHIIHIDFGFMFESSPGGN 312
NI+LD+ GHI DFG + G
Sbjct: 192 NILLDRCGHIRLADFGSCLKLRADGT 217
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 30.7 bits (70), Expect = 0.80
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 287 NIMLDKAGHIIHIDFG 302
NI+LD GHI+ DFG
Sbjct: 169 NILLDSQGHIVLTDFG 184
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 30.8 bits (70), Expect = 0.81
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 287 NIMLDKAGHIIHIDFGF 303
NI+LD+ GH+ DF
Sbjct: 145 NILLDEHGHVHITDFNI 161
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 30.7 bits (70), Expect = 0.91
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 287 NIMLDKAGHIIHIDFG 302
N+MLD GHI DFG
Sbjct: 151 NVMLDSEGHIKIADFG 166
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase;
HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7
PDB: 2jed_A*
Length = 345
Score = 30.3 bits (69), Expect = 1.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 287 NIMLDKAGHIIHIDFG 302
NI+LDK GHI DFG
Sbjct: 148 NILLDKDGHIKIADFG 163
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 30.3 bits (69), Expect = 1.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 287 NIMLDKAGHIIHIDFG 302
N++LD GHI D+G
Sbjct: 140 NVLLDSEGHIKLTDYG 155
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 30.4 bits (69), Expect = 1.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 287 NIMLDKAGHIIHIDFG 302
N++LD GHI D+G
Sbjct: 183 NVLLDSEGHIKLTDYG 198
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 30.3 bits (69), Expect = 1.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 287 NIMLDKAGHIIHIDFG 302
N++LD GH DFG
Sbjct: 154 NVLLDHEGHCKLADFG 169
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 30.5 bits (69), Expect = 1.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 287 NIMLDKAGHIIHIDFG 302
N+MLDK GHI DFG
Sbjct: 279 NLMLDKDGHIKITDFG 294
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 30.5 bits (69), Expect = 1.3
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 287 NIMLDKAGHIIHIDFGFMFESSPGGN 312
N++LD G++ D G E G
Sbjct: 319 NVLLDDDGNVRISDLGLAVELKAGQT 344
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 30.4 bits (68), Expect = 1.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 287 NIMLDKAGHIIHIDFG 302
N+MLD GHI DFG
Sbjct: 472 NVMLDSEGHIKIADFG 487
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 29.8 bits (67), Expect = 1.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 287 NIMLDKAGHIIHIDFG 302
NI+LD GHI D G
Sbjct: 316 NILLDDHGHIRISDLG 331
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine
protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3,
ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A*
1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Length = 328
Score = 28.0 bits (63), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 287 NIMLDKAGHIIHIDFGFMFESSPGGNL 313
N++LD +I DFGF E + GG L
Sbjct: 144 NLLLDADMNIKIADFGFSNEFTVGGKL 170
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside
phosphotransferase, antibiotic resistance; HET: MES PG4;
1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A*
3q2m_A*
Length = 339
Score = 27.3 bits (60), Expect = 9.6
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 17/125 (13%)
Query: 282 DRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEPDIKLTDEMVMVMGGKIEAAPFRWF 341
D H GN+++ I ID+ + +L F V + ++F
Sbjct: 212 DIHAGNVLVGNEESIYIIDWDEPMLAPKERDLMF--------IGGGVGNVWNKPHEIQYF 263
Query: 342 MEL---------CVQAFLAMRPYQESIISLVSLMLDTGLPCFRGQTIKLLRARFAPQATD 392
E + + R ++ + L+ R ++ K + F P
Sbjct: 264 YEGYGEINVDKTILSYYRHERIVEDIAVYGQDLLSRNQNNQSRLESFKYFKEMFDPNNVV 323
Query: 393 KEAAA 397
+ A A
Sbjct: 324 EIAFA 328
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.413
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,645,122
Number of extensions: 409882
Number of successful extensions: 792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 47
Length of query: 427
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 331
Effective length of database: 4,021,377
Effective search space: 1331075787
Effective search space used: 1331075787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)