RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy656
         (427 letters)



>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
           catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 369

 Score =  287 bits (735), Expect = 1e-94
 Identities = 97/396 (24%), Positives = 169/396 (42%), Gaps = 53/396 (13%)

Query: 50  YEREFEFFAQITDISGKIRPFPKGA--------ERKRACLEELSKIKVRPGCYLPSNPEA 101
           + ++ +    +  ++  I+               + +  LE L  + +     +P +P  
Sbjct: 7   FTQQVQVIDMLQKVTIDIKSLSAEKYDVSSQVISQLKQKLENLQNLNLPQSFRVPYDPGL 66

Query: 102 VVLDIDYNSGTPMQSAAKAPYLARFRVKRCGINELEQMAMAICERDDDEEHDHQLVRANS 161
               +       M S  K P    F+         E + +                    
Sbjct: 67  KAGALVIEKCKVMASKKK-PLWLEFKCADPTALSNETIGI-------------------- 105

Query: 162 KDKIMETWQAAIFKVGDDVRQDMLALQVISIFKNVFQQVGLDLYLFPYRVVATSPGCGVI 221
                      IFK GDD+RQDML LQ++ I +++++   LDL L PY  ++T    G+I
Sbjct: 106 -----------IFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMI 154

Query: 222 ECVPDAKSRDQLGRQTDI---GMYEYFIKTYGDE---TSKEFQNARRNFVRSMAAYSVIG 275
           E V DA +  ++ + T        +  +  +  E     ++FQ A   FV S A Y V  
Sbjct: 155 EIVKDATTIAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVAT 214

Query: 276 FLLQIKDRHNGNIMLDKAGHIIHIDFGFMFESSPGGNLGFEPDI---KLTDEMVMVMG-- 330
           F+L I DRHN NIM+ + G++ HIDFG +  +     LG   +     LT + + VMG  
Sbjct: 215 FVLGIGDRHNDNIMISETGNLFHIDFGHILGNYK-SFLGINKERVPFVLTPDFLFVMGTS 273

Query: 331 GKIEAAPFRWFMELCVQAFLAMRPYQESIISLVSLMLDTGLPCFRG-QTIKLLRARFAPQ 389
           GK  +  F+ F ++CV+A+LA+R +   +I L S+ML TG+P     + I+ +R      
Sbjct: 274 GKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYIRDALTVG 333

Query: 390 ATDKEAAAFMIGVIRNSFLNFRTRAYDYLQYYQNQI 425
            ++++A  + +  I        T  +++  +    I
Sbjct: 334 KSEEDAKKYFLDQIEVCRDKGWTVQFNWFLHLVLGI 369


>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 66

 Score = 27.7 bits (62), Expect = 0.48
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 152 HDHQLVRANSKDKIMETWQAAIFKV 176
            DH LVR+N  +K  +    A   +
Sbjct: 41  GDHLLVRSNDLEKTADLLANAGHSL 65


>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 263

 Score = 26.5 bits (58), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 287 NIMLDKAGHIIHIDFGF 303
           N++L  AG +   DFG+
Sbjct: 136 NLLLGSAGELKIADFGW 152


>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 303

 Score = 26.3 bits (57), Expect = 7.6
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 281 KDRHNGNIMLDKAGHIIHIDFGFMFESSPGGN 312
           +D  + NI++ K G     D G         +
Sbjct: 132 RDLKSKNILVKKNGTCCIADLGLAVRHDSATD 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,595,680
Number of extensions: 75574
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 13
Length of query: 427
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 339
Effective length of database: 1,199,356
Effective search space: 406581684
Effective search space used: 406581684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.2 bits)