Query psy6561
Match_columns 223
No_of_seqs 19 out of 21
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 21:17:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hn9_A Lamin-B1; structural ge 37.7 58 0.002 25.0 5.3 66 33-100 50-116 (123)
2 3jt0_A Lamin-B1; structural ge 35.3 46 0.0016 26.5 4.5 68 33-102 63-131 (144)
3 2uur_A Collagen alpha-1(IX) ch 31.6 1.9E+02 0.0066 23.9 7.9 113 18-145 72-199 (245)
4 1ifr_A Lamin A/C; immunoglobul 23.0 87 0.003 24.0 3.9 49 36-86 48-97 (121)
5 2lll_A Lamin-B2; immunoglobuli 22.3 1E+02 0.0035 24.4 4.3 48 36-85 63-111 (139)
6 1ufg_A Lamin A, nuclear lamin; 21.2 1.3E+02 0.0044 24.1 4.8 49 36-86 79-128 (151)
7 2l5s_A TGF-beta receptor type- 18.5 75 0.0026 23.1 2.6 25 97-123 23-47 (88)
8 2jdj_A HAPK, REDY-like protein 17.8 78 0.0027 24.5 2.7 36 39-79 27-62 (105)
9 3kg4_A Uncharacterized protein 17.5 9.5 0.00033 33.1 -2.8 30 66-95 133-164 (235)
10 1hym_B CMTI-V, hydrolyzed cucu 13.1 76 0.0026 19.1 1.2 9 48-56 4-12 (26)
No 1
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=37.74 E-value=58 Score=24.96 Aligned_cols=66 Identities=11% Similarity=0.223 Sum_probs=41.3
Q ss_pred CeEEEEecc-cccCCCCCeEEEeeeecCCCCCCCCCCceeEEEEeeecCCCeeEEEeccccccccccee
Q psy6561 33 GITVLFQYP-KCILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQFGCDLFNEHYVEYC 100 (223)
Q Consensus 33 GV~VlfqyP-sC~l~~~DRVRVyg~~~a~v~s~~~P~sL~YI~ErRI~~GqhsL~F~C~LFdE~Y~eYC 100 (223)
|..+.|.+| ...|+.+..|.|+++... ..-.||+.|..=.+..-..|.+....=|+-=.|--.+|.
T Consensus 50 ~~~~~y~Fp~~~~L~pg~~vtVwa~g~g--~~~~pp~dlv~~~~~~W~~g~~~~t~L~n~~Gee~A~~~ 116 (123)
T 3hn9_A 50 DTSVSYKYTSRYVLKAGQTVTIWAANAG--VTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRS 116 (123)
T ss_dssp TEEEEEECCTTCEECTTCEEEEEETTSS--CCCBTTTEEEETTCCCCCSSSCEEEEEECTTSCEEEEEE
T ss_pred CCceEEEcCCCcEECCCCEEEEEECCCC--CcCCCchhheeccccccCCCCCcEEEEECCCCCEEEEEE
Confidence 444569999 589999999999997653 234677777665444455666644443443334333333
No 2
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=35.26 E-value=46 Score=26.51 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=42.7
Q ss_pred CeEEEEecc-cccCCCCCeEEEeeeecCCCCCCCCCCceeEEEEeeecCCCeeEEEecccccccccceeEE
Q psy6561 33 GITVLFQYP-KCILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFV 102 (223)
Q Consensus 33 GV~VlfqyP-sC~l~~~DRVRVyg~~~a~v~s~~~P~sL~YI~ErRI~~GqhsL~F~C~LFdE~Y~eYCFv 102 (223)
|-.+.|.+| ...|+.+..|.|+++... ..-.||+.|..=.+..-..|......=|+-=.|--.+|...
T Consensus 63 g~~~~y~FP~~~~L~pg~~VtVwa~g~g--~~~~pp~dlv~~~~~sWg~g~~~~T~L~n~~GEevA~~~~~ 131 (144)
T 3jt0_A 63 DTSVSYKYTSRYVLKAGQTVTIWAANAG--VTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTV 131 (144)
T ss_dssp TEEEEEECCTTCEECTTCEEEEEETTSC--CCCBTTTEEEETTCCCCCTTCCCEEEEECTTSCEEEEEECC
T ss_pred CCceEEEcCCCcEECCCCEEEEEECCCC--CCCCCChhheeccccccCCCCCcEEEEECCCCCEEEEEEEE
Confidence 445679998 589999999999997653 33467777776544445566655444344333443444333
No 3
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}
Probab=31.63 E-value=1.9e+02 Score=23.91 Aligned_cols=113 Identities=14% Similarity=0.264 Sum_probs=67.1
Q ss_pred EEeecceeee-cCCCC-CeEEEEecccccCC---------CCCeEEEeeeecCCCCCCCCCCceeEEEEeeecCCCeeEE
Q psy6561 18 FNVHARSIFP-CFAHG-GITVLFQYPKCILP---------ISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQ 86 (223)
Q Consensus 18 lnVharSIFP-C~~~g-GV~VlfqyPsC~l~---------~~DRVRVyg~~~a~v~s~~~P~sL~YI~ErRI~~GqhsL~ 86 (223)
+...++.||| +-+.+ -|.+.++.|.--.+ +.|.++.+|..-.. .-..+.|..+- ...+.+.+.
T Consensus 72 l~~pt~~~fP~glp~eFsil~tlr~~~~~~~~~~~L~sI~d~~~~~qlgv~l~g-----~~~~l~~~y~~-~~g~~q~v~ 145 (245)
T 2uur_A 72 FRIPTRNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKING-----QTQSVVFSYKG-LDGSLQTAA 145 (245)
T ss_dssp CEEEHHHHCTTCCCSSEEEEEEEECCGGGGGCEEEEEEEECTTSCEEEEEEEEG-----GGTEEEEEEEB-TTSCEEEEE
T ss_pred cccchhHhccccCCCCEEEEEEEEcCCCCCCcceEEEEEECCCCcEEEEEEEcC-----CCCEEEEEecC-CCCCeeEEE
Confidence 5567888999 65433 44466675543211 11223333333310 11245555432 234567788
Q ss_pred Eec--ccccccccceeEEEEEeccCcceeeecccccc--ceeccCCCCCCccccCCceEEEee
Q psy6561 87 FGC--DLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVP--TYPVSGQGPSQMASSNGLKLWIGA 145 (223)
Q Consensus 87 F~C--~LFdE~Y~eYCFvYVSqA~tGAV~dv~~~CVP--TlPv~~~~~~~~~~~~~~~~~~~~ 145 (223)
|.= .|||.. ++-+.++..|--.-+-.||-. +.|+. .+++. +.+| .+|||.
T Consensus 146 F~~~~~L~Dg~-----WHklalsV~~~~VtLyvDC~~~~~~~l~--~~~~i-~~~G-~~~lG~ 199 (245)
T 2uur_A 146 FSNLSSLFDSQ-----WHKIMIGVERSSATLFVDCNRIESLPIK--PRGPI-DIDG-FAVLGK 199 (245)
T ss_dssp ECCCGGGCSSS-----CEEEEEEEETTEEEEEETTEEEEEEECC--CBCCC-CCSS-EEEEEE
T ss_pred ecCCccccCCC-----EEEEEEEEECCEEEEEEecCcccccccC--CCCcc-ccCC-EEEEEE
Confidence 877 688887 567788888888888999975 45664 34554 5677 788885
No 4
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=23.00 E-value=87 Score=24.02 Aligned_cols=49 Identities=8% Similarity=0.253 Sum_probs=33.0
Q ss_pred EEEeccc-ccCCCCCeEEEeeeecCCCCCCCCCCceeEEEEeeecCCCeeEE
Q psy6561 36 VLFQYPK-CILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQ 86 (223)
Q Consensus 36 VlfqyPs-C~l~~~DRVRVyg~~~a~v~s~~~P~sL~YI~ErRI~~GqhsL~ 86 (223)
+.|.+|. ..|+.+..|+|++...+. ...||+.|..=.+..--.|.+...
T Consensus 48 ~~y~Fp~~~~L~pg~~vtIws~~~g~--~~~pp~dlv~~~~~sWg~g~~~~t 97 (121)
T 1ifr_A 48 LTYRFPPKFTLKAGQVVTIWAAGAGA--THSPPTDLVWKAQNTWGCGNSLRT 97 (121)
T ss_dssp EEEECCSSCEECTTCEEEEEETTSSC--CCBTTTEEEETTCSCCCCSSCEEE
T ss_pred EEEEeCCCcEECCCCEEEEEeCCCCC--CCCCchhEEEecccccCCCCCeEE
Confidence 7899997 999999999999987532 234666666522333445555543
No 5
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.34 E-value=1e+02 Score=24.37 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=33.2
Q ss_pred EEEeccc-ccCCCCCeEEEeeeecCCCCCCCCCCceeEEEEeeecCCCeeE
Q psy6561 36 VLFQYPK-CILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSL 85 (223)
Q Consensus 36 VlfqyPs-C~l~~~DRVRVyg~~~a~v~s~~~P~sL~YI~ErRI~~GqhsL 85 (223)
+.|.+|. ..|+.+..|+|+++.... .-.||+.|+.=.+..--.|....
T Consensus 63 ~~y~Fp~~~~L~pg~~VtIws~~~g~--~~~pp~dlv~~~q~sWg~G~~~~ 111 (139)
T 2lll_A 63 IAYKFTPKYILRAGQMVTVWAAGAGV--AHSPPSTLVWKGQSSWGTGESFR 111 (139)
T ss_dssp EEEECCTTCEECTTCEEEEEEGGGTC--CCBTTTEEEETTCSSSSCCSEEE
T ss_pred EEEEECCCcEECCCCEEEEEeCCCCC--CCCCchhEEEecccccCCCCCEE
Confidence 7899996 999999999999987633 23467777663333344555544
No 6
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=21.20 E-value=1.3e+02 Score=24.13 Aligned_cols=49 Identities=8% Similarity=0.242 Sum_probs=34.0
Q ss_pred EEEeccc-ccCCCCCeEEEeeeecCCCCCCCCCCceeEEEEeeecCCCeeEE
Q psy6561 36 VLFQYPK-CILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQ 86 (223)
Q Consensus 36 VlfqyPs-C~l~~~DRVRVyg~~~a~v~s~~~P~sL~YI~ErRI~~GqhsL~ 86 (223)
+.|.+|. ..|+.+..|.|++...... -.||+.|+.=.+..--.|.+...
T Consensus 79 ~~y~Fp~~~~L~pg~tVtIws~~~g~~--~~pp~dlv~k~q~sWg~G~~~~T 128 (151)
T 1ufg_A 79 MTYRFPPKFTLKAGQVVTIWASGAGAT--HSPPTDLVWKAQNTWGCGSSLRT 128 (151)
T ss_dssp EEEECCTTCEECTTCEEEEEESSSSCC--CCTTTEEEECSSSCSCCSSEEEE
T ss_pred EEEEECCCcEECCCCEEEEEeCCCCCC--CCCchhEEEecccccCCCCCEEE
Confidence 7899987 9999999999999876332 26677776633333455666553
No 7
>2l5s_A TGF-beta receptor type-1; ALK5, transforming growth factor beta, type I receptor, SIGN protein; NMR {Homo sapiens}
Probab=18.47 E-value=75 Score=23.08 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=19.2
Q ss_pred cceeEEEEEeccCcceeeeccccccce
Q psy6561 97 VEYCFVYVSQDSTGAVSDVKSDCVPTY 123 (223)
Q Consensus 97 ~eYCFvYVSqA~tGAV~dv~~~CVPTl 123 (223)
.++||..|+. .+|.+ .+...|++..
T Consensus 23 ~g~Cf~sv~~-~~g~~-~~~~gC~~~~ 47 (88)
T 2l5s_A 23 DGLCFVSVTE-TTDKV-IHNSMCIAEI 47 (88)
T ss_dssp SSEEEEEEEE-CSSCE-EEEEEEECGG
T ss_pred CCEEeEEEEE-CCCCE-EEEECCCChh
Confidence 4899998885 67766 6678998864
No 8
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=17.81 E-value=78 Score=24.53 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=27.9
Q ss_pred ecccccCCCCCeEEEeeeecCCCCCCCCCCceeEEEEeeec
Q psy6561 39 QYPKCILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVI 79 (223)
Q Consensus 39 qyPsC~l~~~DRVRVyg~~~a~v~s~~~P~sL~YI~ErRI~ 79 (223)
.||.|- .-+.||=|.+.++... ..|| -+||++..+.
T Consensus 27 D~P~~~--~LpsVrsF~V~R~~~~-g~~p--y~yiEvi~v~ 62 (105)
T 2jdj_A 27 DYATCP--DLPSVVRFDVHRASLQ-ANAP--YHYVEVIKIT 62 (105)
T ss_dssp HHHHGG--GCTTEEEEEEEECCCC-TTCS--CSEEEEEEES
T ss_pred hhhhcc--CCCcceeEEEEecccC-CCCC--eeEEEEEecC
Confidence 478887 5688999999997765 5555 8999988764
No 9
>3kg4_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.95A {Mannheimia succiniciproducens}
Probab=17.52 E-value=9.5 Score=33.15 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=25.0
Q ss_pred CCCceeEEEEeeecCCC--eeEEEeccccccc
Q psy6561 66 SPSSQIYITEKKVIRGQ--HSLQFGCDLFNEH 95 (223)
Q Consensus 66 ~P~sL~YI~ErRI~~Gq--hsL~F~C~LFdE~ 95 (223)
.+....=|.|+|+.+|| |...|+|++|...
T Consensus 133 n~~K~~~i~~Rrl~~Gqc~~~P~LG~REf~A~ 164 (235)
T 3kg4_A 133 NTTKHIEMFKRRALKGQCFQQPCMGVREFPAH 164 (235)
T ss_dssp CSHHHHHHHHHHHHTTCCSSCCBSSSTTSBCE
T ss_pred ChHHHHHHHHHHHHcCCcEeCCCceeecCeeE
Confidence 34455568999999999 8999999999875
No 10
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=13.14 E-value=76 Score=19.14 Aligned_cols=9 Identities=11% Similarity=0.619 Sum_probs=7.1
Q ss_pred CCeEEEeee
Q psy6561 48 SDKIRLFGK 56 (223)
Q Consensus 48 ~DRVRVyg~ 56 (223)
-||||||--
T Consensus 4 ~~RVrvfvd 12 (26)
T 1hym_B 4 CNRVRIWVN 12 (26)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEC
Confidence 489999964
Done!