Query psy6561
Match_columns 223
No_of_seqs 19 out of 21
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 21:17:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6561.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6561hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dfca3 b.42.5.1 (A:1260-1382) 38.8 17 0.0012 25.4 4.1 45 102-159 54-98 (123)
2 d2qlvb1 b.1.18.21 (B:161-247) 19.8 80 0.0058 20.2 4.6 46 34-83 4-53 (87)
3 d1z0na1 b.1.18.21 (A:77-163) 5 17.1 71 0.0052 20.8 3.9 45 35-83 3-47 (87)
4 d2b5ic1 b.1.2.1 (C:130-224) Cy 15.2 29 0.0021 22.0 1.4 19 11-29 63-81 (95)
5 d1sb2b1 d.169.1.1 (B:2-128) Sn 14.0 42 0.0031 21.8 2.0 31 87-119 1-31 (127)
6 d1d7ya3 d.87.1.1 (A:309-405) N 10.3 33 0.0024 22.9 0.4 19 4-22 4-22 (97)
7 d1e42a2 d.105.1.1 (A:825-937) 10.3 85 0.0062 22.3 2.8 36 69-108 48-83 (113)
8 d1lkta_ b.90.1.1 (A:) Head-bin 9.8 48 0.0035 24.2 1.2 15 130-145 16-30 (104)
9 d2phcb1 b.62.1.4 (B:86-217) Un 9.8 1.1E+02 0.008 21.9 3.3 35 24-58 84-128 (132)
10 d1ewsa_ g.9.1.1 (A:) Alpha-def 9.5 37 0.0027 20.1 0.4 15 83-97 13-27 (32)
No 1
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.79 E-value=17 Score=25.44 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=28.8
Q ss_pred EEEEeccCcceeeeccccccceeccCCCCCCccccCCceEEEeeeeEEEecCcccccc
Q psy6561 102 VYVSQDSTGAVSDVKSDCVPTYPVSGQGPSQMASSNGLKLWIGAFWKIRTSNNKYLKS 159 (223)
Q Consensus 102 vYVSqA~tGAV~dv~~~CVPTlPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (223)
.|+++..+|.|.-.+...-|++-.+ + .|-+-.|.||..|+|||..
T Consensus 54 kyl~~~~~g~v~a~~~~~~~~e~F~------------~-~~~~g~~alra~nG~yl~a 98 (123)
T d1dfca3 54 KYWTLTATGGVQSTASSKNASCYFD------------I-EWRDRRITLRASNGKFVTS 98 (123)
T ss_dssp EEEEECTTSBEEEEESSCCGGGCBE------------E-EEETTEEEEECTTSSBCEE
T ss_pred CEEEEcCCCcEEEccccCCCceEEE------------E-EEeCCeEEEEeCCCCEEEe
Confidence 4788888888766554444432211 0 1345568999999999963
No 2
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=19.79 E-value=80 Score=20.25 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=24.8
Q ss_pred eEEEEecccccCCCCCeEEEeeeecCCC----CCCCCCCceeEEEEeeecCCCe
Q psy6561 34 ITVLFQYPKCILPISDKIRLFGKVPADV----SSPRSPSSQIYITEKKVIRGQH 83 (223)
Q Consensus 34 V~VlfqyPsC~l~~~DRVRVyg~~~a~v----~s~~~P~sL~YI~ErRI~~Gqh 83 (223)
|+|-|.++. .+..|.|-|-=..=. ..........|.++..+.+|+|
T Consensus 4 vpv~f~w~~----~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y 53 (87)
T d2qlvb1 4 VPVEIRWQQ----GGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTH 53 (87)
T ss_dssp EEEEEEECS----CCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEE
T ss_pred EEEEEEECC----CCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCE
Confidence 678888864 356688887432100 0001122345666666666654
No 3
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}
Probab=17.15 E-value=71 Score=20.78 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEecccccCCCCCeEEEeeeecCCCCCCCCCCceeEEEEeeecCCCe
Q psy6561 35 TVLFQYPKCILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQH 83 (223)
Q Consensus 35 ~VlfqyPsC~l~~~DRVRVyg~~~a~v~s~~~P~sL~YI~ErRI~~Gqh 83 (223)
+|.|.||. .+..|.|-|-=..=...........|..+..|.+|+|
T Consensus 3 P~~f~w~~----~a~~V~v~Gsfn~W~~~~~~~~~g~~~~tl~L~~G~y 47 (87)
T d1z0na1 3 PTVFRWTG----GGKEVYLSGSFNNWSKLPMTRSQNNFVAILDLPEGEH 47 (87)
T ss_dssp EEEEEECS----CCSCEEEEEGGGTTCCEECEEETTEEEEEEEECSEEE
T ss_pred CEEEEEcC----CCEEEEEEEEeCCCCccccccCCCcEEEEEECCCceE
Confidence 56677763 2456777663221110000112245666666666644
No 4
>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.20 E-value=29 Score=21.96 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=12.8
Q ss_pred eecceeeEEeecceeeecC
Q psy6561 11 AWNHQYEFNVHARSIFPCF 29 (223)
Q Consensus 11 ~WS~qyvlnVharSIFPC~ 29 (223)
+=.++|.|+|+||..--|.
T Consensus 63 ~p~t~Y~frVRa~~~~~~~ 81 (95)
T d2b5ic1 63 DGQKRYTFRVRSRFNPLCG 81 (95)
T ss_dssp CTTSCEEEEEEEECCSSSC
T ss_pred CCCCEEEEEEEEeeCCCCC
Confidence 3456777888877666664
No 5
>d1sb2b1 d.169.1.1 (B:2-128) Snake coagglutinin beta chain {Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717]}
Probab=14.01 E-value=42 Score=21.81 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=21.8
Q ss_pred EecccccccccceeEEEEEeccCcceeeecccc
Q psy6561 87 FGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDC 119 (223)
Q Consensus 87 F~C~LFdE~Y~eYCFvYVSqA~tGAV~dv~~~C 119 (223)
|.|.---..|..+||.++....+ -.+-+..|
T Consensus 1 f~Cp~gw~~~~~~CY~~~~~~~t--w~~A~~~C 31 (127)
T d1sb2b1 1 FRCPTTWSASKLYCYKPFKEKKT--WIEAERFC 31 (127)
T ss_dssp CCCCTTCEECSSEEEEEEEEEEC--HHHHHHHH
T ss_pred CcCCCCCeecCCEEEEEECeecC--HHHHHHHH
Confidence 56766667788999999987653 33445667
No 6
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=10.32 E-value=33 Score=22.94 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=13.7
Q ss_pred eeeeEEEeecceeeEEeec
Q psy6561 4 TYVLSKAAWNHQYEFNVHA 22 (223)
Q Consensus 4 ~~a~~kv~WS~qyvlnVha 22 (223)
+...+.-=||+||.+++..
T Consensus 4 ~y~~vP~FWSdQ~d~~iq~ 22 (97)
T d1d7ya3 4 GYAELPWYWSDQGALRIQV 22 (97)
T ss_dssp CCCCCCEEEEEETTEEEEE
T ss_pred CCCCCCcEEeccCCCeeEE
Confidence 3456777899998877654
No 7
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.30 E-value=85 Score=22.31 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=26.1
Q ss_pred ceeEEEEeeecCCCeeEEEecccccccccceeEEEEEecc
Q psy6561 69 SQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDS 108 (223)
Q Consensus 69 sL~YI~ErRI~~GqhsL~F~C~LFdE~Y~eYCFvYVSqA~ 108 (223)
..-+|+ +|-.+||..++|+|.+=+.. .+.+.+.+..
T Consensus 48 nif~IA-kR~~~gq~~lYfS~K~~n~i---~~L~El~~~~ 83 (113)
T d1e42a2 48 NVYTIA-KRNVEGQDMLYQSLKLTNGI---WILAELRIQP 83 (113)
T ss_dssp TCEEEE-EEEETTEEEEEEEEEBTTSC---EEEEEEEECT
T ss_pred ceEEEE-eecCCCCeEEEEEEEcCCCC---EEEEEEEEec
Confidence 578888 57888999999999986654 3455555543
No 8
>d1lkta_ b.90.1.1 (A:) Head-binding domain of phage P22 tailspike protein {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=9.83 E-value=48 Score=24.19 Aligned_cols=15 Identities=47% Similarity=0.683 Sum_probs=11.4
Q ss_pred CCCccccCCceEEEee
Q psy6561 130 PSQMASSNGLKLWIGA 145 (223)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (223)
..-|+-+|| |+|||-
T Consensus 16 r~F~~~~~G-KiYIGk 30 (104)
T d1lkta_ 16 RSFKAVANG-KIYIGQ 30 (104)
T ss_dssp SSSCBCTTE-EEEEES
T ss_pred HHHHhhcCC-cEEEec
Confidence 345777887 999994
No 9
>d2phcb1 b.62.1.4 (B:86-217) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.82 E-value=1.1e+02 Score=21.94 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=25.4
Q ss_pred eeeecCCCCCeEEEEecccc----------cCCCCCeEEEeeeec
Q psy6561 24 SIFPCFAHGGITVLFQYPKC----------ILPISDKIRLFGKVP 58 (223)
Q Consensus 24 SIFPC~~~gGV~VlfqyPsC----------~l~~~DRVRVyg~~~ 58 (223)
.|+|++.-||-++.=+.|.. .+..+|+||-+...+
T Consensus 84 ~IYp~~sPGGW~iiGrtp~~~fd~~~~~p~ll~pGD~V~F~~I~~ 128 (132)
T d2phcb1 84 GWYAIESPGGWRIIGRIPLRTFNPGKVPPSIVLPGDYVKFVPIDE 128 (132)
T ss_dssp EEESSSEEECSEEEEECCSCCBCTTSSSSBSSCTTCEEEEEEECC
T ss_pred EEEecCCCCCceEEEEechhhcCCCCCCCcccCCCCEEEEEECCH
Confidence 69999988899977777654 444567777776554
No 10
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=9.54 E-value=37 Score=20.14 Aligned_cols=15 Identities=33% Similarity=0.809 Sum_probs=11.6
Q ss_pred eeEEEeccccccccc
Q psy6561 83 HSLQFGCDLFNEHYV 97 (223)
Q Consensus 83 hsL~F~C~LFdE~Y~ 97 (223)
..+.=+|-||+.+|+
T Consensus 13 evidgscglfnskyi 27 (32)
T d1ewsa_ 13 EVIDGSCGLFNSKYI 27 (32)
T ss_dssp EEEEECCSSSSCSEE
T ss_pred heeccccccccceeE
Confidence 345568999999986
Done!