RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6561
(223 letters)
>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase. Spermine
and spermidine are polyamines. This family includes
spermidine synthase that catalyzes the fifth (last) step
in the biosynthesis of spermidine from arginine, and
spermine synthase.
Length = 240
Score = 29.2 bits (66), Expect = 1.5
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 21/117 (17%)
Query: 22 ARSIFPCFAHGGITVLFQYPKCILPISDKIRL-------FGKVPADVSSPRSPSSQIYIT 74
++ P A G F P+ + I D + F + D + P P+ ++
Sbjct: 115 SKKFLPSLAGG-----FDDPRVKVVIGDGFKFLKDYLVEFDVIIVDSTDPVGPAENLFSK 169
Query: 75 E-----KKVIR--GQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYP 124
E K+ ++ G Q + + + + V VPTYP
Sbjct: 170 EFYDLLKRALKEDGVFVTQAESPWLHLELI--INILKNGKKVFPVVMPYVVPVPTYP 224
>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4
hydrolase. This family includes leukotriene A4
hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog
cold-active aminopeptidase (Colwellia
psychrerythraea-type peptidase; ColAP), both members of
the aminopeptidase M1 family. LTA4H, is a bifunctional
enzyme possessing an aminopeptidase as well as an
epoxide hydrolase activity. The two activities occupy
different, but overlapping sites. The activity and
physiological relevance of the aminopeptidase is as yet
unknown while the epoxide hydrolase converts leukotriene
A4 (LTA4) into leukotriene B4 (LTB4), a potent
chemotaxin that is fundamental to the inflammatory
response of mammals. It accepts a variety of substrates,
including some opioid, di- and tripeptides, as well as
chromogenic aminoacyl-p-nitroanilide derivatives. The
aminopeptidase activity of LTA4H is possibly involved in
the processing of peptides related to inflammation and
host defense. Kinetic analysis shows that LTA4H
hydrolyzes arginyl tripeptides with high efficiency and
specificity, indicating its function as an arginyl
aminopeptidase. LTA4H is overexpressed in certain human
cancers, and has been identified as a functionally
important target for mediating anticancer properties of
resveratrol, a well known red wine polyphenolic compound
with cancer chemopreventive activity.
Length = 442
Score = 29.4 bits (67), Expect = 1.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 20 VHARSIFPCF 29
+HARS+FPC
Sbjct: 134 IHARSLFPCQ 143
>gnl|CDD|184877 PRK14877, PRK14877, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 1062
Score = 27.8 bits (61), Expect = 6.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 95 HYVEYCFVYVS---QDSTGAVSDVKSDCVPTYPVSGQGPSQMASSNGLKLWIG 144
HY +Y Y + QD+ + + + VP Y G G M N +++W G
Sbjct: 278 HYPDYKEFYCNSPKQDNFSSCTITRDFSVPVYISGGNGDMSMCGDNCVRIWFG 330
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 27.6 bits (61), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 15 QYEFNVHARSIFPCFAHGGITVLFQYP-KCILPISDKI 51
Q E A + C G+T +F YP ILP+ D +
Sbjct: 11 QCEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDAL 48
>gnl|CDD|240594 cd12937, GUCT_RH7_like, RNA-binding GUCT domain found in plant
DEAD-box ATP-dependent RNA helicase 7 (RH7) and similar
proteins. This subfamily corresponds to the Gu
C-terminal (GUCT) domain of RH7 and similar proteins.
RH7, also termed plant RNA helicase 75 (PRH75), is a new
nucleus-localized member of the DEAD-box protein family
from higher plants. It displays a weak ATPase activity
which is barely stimulated by RNA ligands. RH7 contains
an N-terminal KDES domain rich in lysine, glutamic acid,
aspartic acid, and serine residues, seven highly
conserved helicase motifs in the central region, a GUCT
domain, and a C-terminal GYR domain harboring a large
number of glycine residues interrupted by either
arginines or tyrosines. RH7 is RNA specific and harbors
two possible RNA-binding motifs, the helicase motif VI
(HRIGRTGR) and the C-terminal glycine-rich GYR domain.
Length = 86
Score = 26.0 bits (58), Expect = 6.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 106 QDSTGAVSDVKSDCVPTY 123
D GAV DV S+ + +
Sbjct: 50 ADGKGAVFDVPSELIEEF 67
>gnl|CDD|233856 TIGR02411, leuko_A4_hydro, leukotriene A-4
hydrolase/aminopeptidase. Members of this family
represent a distinctive subset within the zinc
metallopeptidase family M1 (pfam01433). The majority of
the members of pfam01433 are aminopeptidases, but the
sequences in this family for which the function is known
are leukotriene A-4 hydrolase. A dual epoxide hydrolase
and aminopeptidase activity at the same active site is
indicated. The physiological substrate for
aminopeptidase activity is not known.
Length = 602
Score = 27.4 bits (61), Expect = 8.0
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
Query: 14 HQYEFN----VHARSIFPCF 29
H Y F+ +HARS+FPC
Sbjct: 123 HPYLFSQCQAIHARSLFPCQ 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.130 0.389
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,391,209
Number of extensions: 891831
Number of successful extensions: 659
Number of sequences better than 10.0: 1
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 9
Length of query: 223
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 130
Effective length of database: 6,812,680
Effective search space: 885648400
Effective search space used: 885648400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)