RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6561
(223 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 40/233 (17%), Positives = 70/233 (30%), Gaps = 76/233 (32%)
Query: 17 EFNVHARSIFPCFAHGGITVLFQYPKCI----LPISDKIRLFG--------KVPADVSSP 64
+ N H P I+ L K + P S L+G K P+ +
Sbjct: 355 KTNSH----LPAGKQVEIS-LVNGAKNLVVSGPPQS----LYGLNLTLRKAKAPSGLDQS 405
Query: 65 RSPSSQIYITEKKVIRGQHSLQFGCDL-----FNEHYVEYCFVYVSQD-STGAVSDVKSD 118
R P S+ K S +F L F+ H + +++D VS D
Sbjct: 406 RIPFSE----RKLKF----SNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 119 C-VPTYPVSGQGPSQMASSNGLKLWIGAFWKIRTSNNKYLKSTIPAITKG------ASKR 171
+P Y + +G L R + + + I + ++
Sbjct: 455 IQIPVY----------DTFDGSDL--------RVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 172 RSNKI------SVSNFHNATSTIKEAK--KILIDGTKHSNSSTATANSRSGNK 216
++ I S T K+ ++++ GT N + G K
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP-----DDDYGFK 544
Score = 32.3 bits (73), Expect = 0.13
Identities = 33/257 (12%), Positives = 62/257 (24%), Gaps = 129/257 (50%)
Query: 21 HARSIFPCFAHGG---ITVLFQ--------YPKCILPI---------------SDKIRLF 54
+A+ + F GG F+ Y + + D ++F
Sbjct: 153 NAQ-LVAIF--GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 55 GKVPADVSS----PRSPSSQIYITEKKVIRGQHSL------QFGCDLFNEHYVEYC---- 100
+ ++ P + + Y+ + S Q HYV
Sbjct: 210 TQG-LNILEWLENPSNTPDKDYLLSIPI-----SCPLIGVIQLA------HYVVTAKLLG 257
Query: 101 -----FVYVSQDSTGAVSDV-------KSD----------------------CVPTYPVS 126
+ +TG + ++D C YP +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 127 -------------GQG-PSQMASSNGLKL-----WIGAFWKIRTSNNKYLKSTIPAITKG 167
+G PS M S + L ++ N +L PA
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-------NSHL----PA---- 362
Query: 168 ASKRRSNKISVSNFHNA 184
++ +S N
Sbjct: 363 -----GKQVEISLV-NG 373
Score = 30.4 bits (68), Expect = 0.54
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 53/144 (36%)
Query: 6 VLSKAAWNHQYEFNVHARSIFP---CFA-H-----------GGITVLFQYPKCILPISDK 50
++ KAA+ + ++ + P FA H + + I
Sbjct: 1738 LMEKAAFED-----LKSKGLIPADATFAGHSLGEYAALASLADV----------MSIESL 1782
Query: 51 IRL-F--GK-----VPADVSSPRSPSSQIYITEKKVIRG--QHSLQFGCDLFNEHYVEYC 100
+ + F G VP D RS I I +V Q +LQ+ + +
Sbjct: 1783 VEVVFYRGMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 101 FV---------YVSQDSTGAVSDV 115
+ YV + G + +
Sbjct: 1842 EIVNYNVENQQYV---AAGDLRAL 1862
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.066
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 53/147 (36%)
Query: 39 QYPKCILPISDKIRLFGKVPADVSSPR-----SPSSQIYIT--EKKVI-------RGQHS 84
Y C+L + +V + + + S +I +T K+V S
Sbjct: 242 PYENCLL-VLL----------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 85 LQFGCDLFNEHYVEYCFV-YVSQDSTGAVSDVKSDCVPTYPVSGQGPSQMASSNGLKL-W 142
L V+ + Y+ D+ P ++ ++N +L
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCR----PQDL--------------PREVLTTNPRRLSI 332
Query: 143 IGAF-------WK-IRTSNNKYLKSTI 161
I W + N L + I
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTII 359
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 29.1 bits (65), Expect = 1.2
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 101 FVYVSQDSTGAVS--DVKSD-CVPTYPVSGQGPSQMA-SSNGLKLWI 143
++VSQ AV D+K+ T ++G+ + ++
Sbjct: 182 ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYC 228
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Length = 481
Score = 28.2 bits (63), Expect = 2.0
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 6/28 (21%)
Query: 51 IRLFGKVP------ADVSSPRSPSSQIY 72
+R FG VP + PR+ +
Sbjct: 139 VRAFGDVPYYTNAYNEAPLPRTNMVIVL 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.1
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 137 NGLKLWIGAFWKIRTSNNKYLKSTIPAITKGAS 169
LK K++ S Y + PA+ A+
Sbjct: 20 QALK-------KLQASLKLYADDSAPALAIKAT 45
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 26.7 bits (59), Expect = 6.9
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 20 VHARSIFPCF 29
+HARS+FPCF
Sbjct: 149 IHARSLFPCF 158
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Length = 478
Score = 26.3 bits (58), Expect = 8.7
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 51 IRLFGKVP---------ADVSSPRSPSSQIY 72
+R++G VP S PR+ + +
Sbjct: 126 VRIWGDVPLVTYSYDNGTFPSMPRTDAQTVL 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.389
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,089,862
Number of extensions: 161849
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 11
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)