RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6561
         (223 letters)



>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA
           reductase {Pseudomonas mevalonii [TaxId: 32044]}
          Length = 110

 Score = 27.1 bits (60), Expect = 0.86
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 176 ISVSNFHNATSTIKEAKKILIDGTKHSNSSTATANSRSG 214
           + + +  NA  ++   K  +I+     N      NS  G
Sbjct: 9   VGIQDPLNARLSLLRRKDEIIELA---NRKDQLLNSLGG 44


>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 497

 Score = 27.6 bits (61), Expect = 1.4
 Identities = 12/118 (10%), Positives = 31/118 (26%), Gaps = 13/118 (11%)

Query: 1   MSITYVLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQ--YPKCILPISDKIRLFGKVP 58
                  SK      Y            +    + + F    P  I   +D +       
Sbjct: 303 WENIIGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYN---- 358

Query: 59  ADVSSPRSPSSQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVK 116
                        +  E+ ++  +   +   +++N+       +   + S G + D+ 
Sbjct: 359 -------FHILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPRKYSEGILQDIH 409


>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli
          [TaxId: 562]}
          Length = 94

 Score = 25.3 bits (55), Expect = 2.9
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 48 SDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQFGCDLFN 93
          S ++R   K PA +   +     I +   KV+  Q   +F  ++  
Sbjct: 17 SRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLT 62


>d1x1ia2 b.24.1.1 (A:660-777) Xanthan lyase {Bacillus sp. gl1
           [TaxId: 84635]}
          Length = 118

 Score = 24.4 bits (53), Expect = 7.0
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 132 QMASSNGLKLWIGAFWKIRTSNNKYLKSTIPAITKGASKRRSNKISVSNFHNATSTIKEA 191
           Q      L L    FW   T     + S   A     ++  +++   ++  + T      
Sbjct: 13  QSVKEKTLGLVGANFWTDTTQTADLITSNKKASV--MTREIADERLEASVSDPTQANNGT 70

Query: 192 KKILIDG 198
             I +  
Sbjct: 71  IAIELAR 77


>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor,
           catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 295

 Score = 24.8 bits (54), Expect = 9.0
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 12/69 (17%)

Query: 159 STIPAITKGASKRRSNKISVSNFHN----------ATSTIKEAKKILIDGTKHSNSSTAT 208
           S+    T       +N+ S+    N          A   ++E K ++I     S  +T  
Sbjct: 92  SSSLGSTYWKKYNLTNETSIIRVSNSARGANGIKIALEEVQEGKPVIITSGNLSGCTTIV 151

Query: 209 ANSRSGNKF 217
           A  R     
Sbjct: 152 A--RKEGYI 158


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 763,907
Number of extensions: 32024
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 8
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)