BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6562
         (429 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XFK|A Chain A, 1.8a Crsytal Strucutre Of Formiminoglutamase From Vibrio
           Cholerae O1 Biovar Eltor Str. N16961
          Length = 336

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 325 QSQGTHF--AGLKLPSLSICVLPYRLTFCLRFDYNTNESYLIPIRISSTHPLEQI 377
           Q    HF   G+K P + I      + F   FD  T ES L P+R SS  P  QI
Sbjct: 135 QGLAQHFLATGVKQPRIGI------INFDAHFDLRTFESELAPVRPSSGTPFNQI 183


>pdb|1WPB|A Chain A, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|B Chain B, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|C Chain C, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|D Chain D, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|E Chain E, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|F Chain F, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|G Chain G, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|H Chain H, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|I Chain I, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|J Chain J, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|K Chain K, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|L Chain L, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|M Chain M, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|N Chain N, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|O Chain O, Structure Of Escherichia Coli Yfbu Gene Product
 pdb|1WPB|P Chain P, Structure Of Escherichia Coli Yfbu Gene Product
          Length = 172

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 107 YLILKTVEERDQGLGLQINTVSKKVGGIDESTVETSGNYIDIDFTLWVSW 156
           Y  L+T+ ER  G GLQ+  + ++ G + E T  T  + +++   L VSW
Sbjct: 37  YRRLQTIIER--GYGLQMRELDREFGELKEETCRTIIDIMEMYHALHVSW 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,283,563
Number of Sequences: 62578
Number of extensions: 545679
Number of successful extensions: 996
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 7
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)