BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6562
(429 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96MH6|TMM68_HUMAN Transmembrane protein 68 OS=Homo sapiens GN=TMEM68 PE=2 SV=2
Length = 324
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 29/167 (17%)
Query: 139 VETSGNYIDIDFTLWVSWLLTPLFITIFLPLIILSMVYLSAIMLYMYRFGQWCMGTCLVI 198
VE +Y++ F ++ W+ TPL + I LP + ++YL+ I L++Y+
Sbjct: 31 VEQLEDYLN--FANYLLWVFTPLILLI-LPYFTIFLLYLTIIFLHIYK------------ 75
Query: 199 NRAWVQSHPRQRLKEILTEEFT--FWHRARTVIATMWDAHGWVWHGYEVVNMDRIPDNSS 256
K +L E ++ W AR +AT+WD H VWHGYEV M++IP++
Sbjct: 76 ------------RKNVLKEAYSHNLWDGARKTVATLWDGHAAVWHGYEVHGMEKIPEDGP 123
Query: 257 ALIIYYHGALPVDLYYFLSKVFLVKNRLMHTVADNFLFRIPAARFII 303
ALII+YHGA+P+D YYF++K+F+ K R VAD+F+F+IP ++
Sbjct: 124 ALIIFYHGAIPIDFYYFMAKIFIHKGRTCRVVADHFVFKIPGFSLLL 170
>sp|Q0VCR6|TMM68_BOVIN Transmembrane protein 68 OS=Bos taurus GN=TMEM68 PE=2 SV=1
Length = 334
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 27/157 (17%)
Query: 149 DFTLWVSWLLTPLFITIFLPLIILSMVYLSAIMLYMYRFGQWCMGTCLVINRAWVQSHPR 208
+F ++ W+ TPL + I LP + ++YL+ I L++Y+
Sbjct: 39 NFANYLLWVFTPLLLLI-LPYFTIFLLYLTIIFLHIYK---------------------- 75
Query: 209 QRLKEILTEEFT--FWHRARTVIATMWDAHGWVWHGYEVVNMDRIPDNSSALIIYYHGAL 266
K +L E ++ W AR +AT+WD H VWHGYEV M++IP+ ALII+YHGA+
Sbjct: 76 --RKNVLKEAYSHNLWDGARKTVATLWDGHAAVWHGYEVHGMEKIPEEGPALIIFYHGAI 133
Query: 267 PVDLYYFLSKVFLVKNRLMHTVADNFLFRIPAARFII 303
P+D YYF++K+F+ K R VAD+F+F+IP ++
Sbjct: 134 PIDFYYFMAKIFIHKGRTCRVVADHFVFKIPGFSLLL 170
>sp|Q9D850|TMM68_MOUSE Transmembrane protein 68 OS=Mus musculus GN=Tmem68 PE=2 SV=1
Length = 329
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 30/167 (17%)
Query: 139 VETSGNYIDIDFTLWVSWLLTPLFITIFLPLIILSMVYLSAIMLYMYRFGQWCMGTCLVI 198
VE +Y++ F + W+ TPL + I LP + ++YL+ I L++Y+
Sbjct: 31 VEQLEDYLN--FANHLLWVFTPLILLI-LPYFTIFLLYLTIIFLHIYK------------ 75
Query: 199 NRAWVQSHPRQRLKEILTEEFT--FWHRARTVIATMWDAHGWVWHGYEVVNMDRIPDNSS 256
K +L E ++ W AR +AT+WD H VWHGYEV M++IP+ +
Sbjct: 76 ------------RKNVLKEAYSHNLWDGARKTVATLWDGHAAVWHGYEVHGMEKIPE-GA 122
Query: 257 ALIIYYHGALPVDLYYFLSKVFLVKNRLMHTVADNFLFRIPAARFII 303
ALII+YHGA+P+D YYF++K+F+ K R VAD+F+F+IP ++
Sbjct: 123 ALIIFYHGAIPIDFYYFMAKIFIQKGRTCRVVADHFVFKIPGFSLLL 169
>sp|Q5ZJD8|TMM68_CHICK Transmembrane protein 68 OS=Gallus gallus GN=TMEM68 PE=2 SV=1
Length = 332
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 27/169 (15%)
Query: 137 STVETSGNYIDIDFTLWVSWLLTPLFITIFLPLIILSMVYLSAIMLYMYRFGQWCMGTCL 196
+ VE + +Y+ + ++SW+L PL I LP+ I +C T L
Sbjct: 29 TGVEHTEDYLS--YGAYLSWVLFPLAIVFILPVAIFF----------------FCFNTSL 70
Query: 197 VINRAWVQSHPRQRLKEILTEEFT--FWHRARTVIATMWDAHGWVWHGYEVVNMDRIPDN 254
++ H +R K E + W+ A+ ++ +WD HG VWHGYE+ + IP+
Sbjct: 71 LL------LHIYKRRKNGFNEGHSGDVWYGAKEMLVNLWDGHGRVWHGYELHGDENIPE- 123
Query: 255 SSALIIYYHGALPVDLYYFLSKVFLVKNRLMHTVADNFLFRIPAARFII 303
ALI++YHGA PVD YF++++ + + R H VAD+F+FR+P + I
Sbjct: 124 VPALIVFYHGASPVDYLYFMARLLIRRKRYCHVVADHFVFRLPGLKMFI 172
>sp|A7LCJ3|SN_PIG Sialoadhesin OS=Sus scrofa GN=SIGLEC1 PE=1 SV=1
Length = 1730
Score = 35.0 bits (79), Expect = 1.2, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 316 TEGNRQSLNQSQGTHFAGLKLPSLSICVLPYRLTFCLRFDYNTNESYLIPIRISSTHPLE 375
+EGNR S +GT ++PS+ LP +L + D+N + Y+ P T P+
Sbjct: 120 SEGNRWS--DVKGTVVTVTEVPSVPTIALPAKLHEGMEVDFNCSTPYVCP-----TEPVN 172
Query: 376 QIAPTPKPQSGLFVYEVKLKRNCTYQWRSVHVGRVWRPYTQI 417
P + + KL+ + T ++H+ W+ + +I
Sbjct: 173 LQWQGQDPTRSVTSHLQKLEPSGTSHMETLHMALSWQDHGRI 214
>sp|Q83QS1|YFBU_SHIFL UPF0304 protein YfbU OS=Shigella flexneri GN=yfbU PE=3 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 107 YLILKTVEERDQGLGLQINTVSKKVGGIDESTVETSGNYIDIDFTLWVSW 156
Y L+T+ ER G GLQ+ + ++ G + E T T + +D+ L+VSW
Sbjct: 29 YRRLQTIIER--GYGLQMRELDREFGELKEETCRTIIDIMDMYHALYVSW 76
>sp|P38181|NU170_YEAST Nucleoporin NUP170 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP170 PE=1 SV=1
Length = 1502
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 275 SKVFLVKNRLMHTVADNFLFRIPAARFI-IITPDNGNGLKGFTEG--NRQSLNQSQG 328
SKV L K+ L+ + N L +IP FI + DN NG GF++ + +++Q +G
Sbjct: 310 SKVCLTKSALLSLLPTNMLSQIPGVDFIQALFEDNSNGNGGFSQETITQLTIDQQRG 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,232,890
Number of Sequences: 539616
Number of extensions: 7236452
Number of successful extensions: 13741
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13727
Number of HSP's gapped (non-prelim): 14
length of query: 429
length of database: 191,569,459
effective HSP length: 120
effective length of query: 309
effective length of database: 126,815,539
effective search space: 39186001551
effective search space used: 39186001551
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)