Query psy6562
Match_columns 429
No_of_seqs 126 out of 143
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 21:18:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 97.6 1E-05 3.5E-10 81.0 0.1 75 219-299 92-176 (367)
2 1jb0_I Photosystem 1 reaction 41.4 20 0.0007 25.8 2.9 24 152-176 8-31 (38)
3 4grv_A Neurotensin receptor ty 24.8 89 0.0031 30.2 5.3 21 160-180 209-229 (510)
4 3vw7_A Proteinase-activated re 22.0 1.1E+02 0.0036 28.4 5.0 25 161-186 193-217 (484)
5 3odu_A C-X-C chemokine recepto 17.7 1.4E+02 0.0048 27.7 4.9 25 161-186 214-238 (502)
6 3uon_A Human M2 muscarinic ace 16.3 1.1E+02 0.0037 28.1 3.7 25 161-186 191-215 (467)
7 4dkl_A MU-type opioid receptor 14.4 1.9E+02 0.0064 26.4 4.7 25 161-186 186-210 (464)
8 2rh1_A Beta-2-adrenergic recep 12.9 1.7E+02 0.0058 27.9 4.1 21 161-181 211-231 (500)
9 3eml_A Human adenosine A2A rec 12.2 1.3E+02 0.0046 27.5 3.1 25 161-186 197-221 (488)
10 3v2y_A Sphingosine 1-phosphate 12.0 1.6E+02 0.0053 28.5 3.6 20 162-181 225-244 (520)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=97.57 E-value=1e-05 Score=80.95 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=51.7
Q ss_pred CchhHHHHHHHHHHHHHHhhheeeeEEee-------cccCCCCCCeEEEEecCCCchhHHHHHHHHHhh---CCCchhhh
Q psy6562 219 FTFWHRARTVIATMWDAHGWVWHGYEVVN-------MDRIPDNSSALIIYYHGALPVDLYYFLSKVFLV---KNRLMHTV 288 (429)
Q Consensus 219 ~DpW~~Ar~~VA~lWd~ha~iWfRyEV~G-------LENIP~eGPaLLVgNHG~LPID~~yl~aal~l~---~gRlLR~L 288 (429)
+|.+..++..+..+.+. .+..|.| .||||+++++++++||-+. +|...+...+-.. -.+.+..+
T Consensus 92 ~d~y~~~~~~ir~li~~-----~~s~V~G~e~~~~~~E~l~~~~~vIfisNHQS~-~D~~vi~~~l~~~~~~l~~~~~fV 165 (367)
T 1iuq_A 92 FDYYIFGQNYIRPLIDF-----GNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTE-ADPAIISLLLEKTNPYIAENTIFV 165 (367)
T ss_dssp SCHHHHHHHHHGGGBCG-----GGCEEECHHHHHHHHHHHHTTCEEEEEECCCCT-THHHHHHHHHTTTCHHHHHHCEEE
T ss_pred hhHHHHHHHHHHHHHhh-----cCCEeecchhhhhHHhhccCCCcEEEEECCccc-hhHHHHHHHHhhcccccccceEEE
Confidence 56677777776665552 3667999 8888889999999999554 5998776665210 02345666
Q ss_pred hhhhhccCcch
Q psy6562 289 ADNFLFRIPAA 299 (429)
Q Consensus 289 ADrFlFklPG~ 299 (429)
|-+=+++.|..
T Consensus 166 Ak~eL~~~Pl~ 176 (367)
T 1iuq_A 166 AGDRVLADPLC 176 (367)
T ss_dssp ECTHHHHCTTT
T ss_pred eehhhhcCccc
Confidence 76667766666
No 2
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=41.41 E-value=20 Score=25.80 Aligned_cols=24 Identities=13% Similarity=0.868 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6562 152 LWVSWLLTPLFITIFLPLIILSMVY 176 (429)
Q Consensus 152 ~~l~WlltPL~i~fiLP~~ii~~lY 176 (429)
.|+-|++.|| +.+++|.+...+++
T Consensus 8 ~~LPsI~VPl-VglvfPai~Mallf 31 (38)
T 1jb0_I 8 SFLPWIFIPV-VCWLMPTVVMGLLF 31 (38)
T ss_dssp TTHHHHHHHH-HHTHHHHHHHHHHH
T ss_pred hhCChhhHhH-HHHHHHHHHHHHHH
Confidence 4799999999 56889987766544
No 3
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=24.79 E-value=89 Score=30.17 Aligned_cols=21 Identities=14% Similarity=0.542 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6562 160 PLFITIFLPLIILSMVYLSAI 180 (429)
Q Consensus 160 PL~i~fiLP~~ii~~lY~s~i 180 (429)
=.++.|++|+++++++|..++
T Consensus 209 ~~~~~f~iP~~ii~~~Y~~I~ 229 (510)
T 4grv_A 209 NTFMSFLFPMLVISILNTVIA 229 (510)
T ss_dssp HHHHHTHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhHHHHHHHHHHHH
Confidence 346779999999999997654
No 4
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=21.95 E-value=1.1e+02 Score=28.37 Aligned_cols=25 Identities=32% Similarity=0.532 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6562 161 LFITIFLPLIILSMVYLSAIMLYMYR 186 (429)
Q Consensus 161 L~i~fiLP~~ii~~lY~s~i~LhiYk 186 (429)
.++.|++|++++++.|..++ ..+.|
T Consensus 193 ~~~~~~~P~~ii~~~Y~~I~-~~l~~ 217 (484)
T 3vw7_A 193 SAVFFFVPLIISTVCYVSII-RCLSS 217 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHTTS
T ss_pred HHHHHhHHHHHHHHHHHHHH-HHHhH
Confidence 56779999999999997654 33444
No 5
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=17.70 E-value=1.4e+02 Score=27.68 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6562 161 LFITIFLPLIILSMVYLSAIMLYMYR 186 (429)
Q Consensus 161 L~i~fiLP~~ii~~lY~s~i~LhiYk 186 (429)
.++.|++|++++++.|..++ ..+.|
T Consensus 214 ~~~~~~~p~~ii~~~y~~I~-~~l~~ 238 (502)
T 3odu_A 214 IMVGLILPGIVILSCYCIII-SKLSH 238 (502)
T ss_dssp HHHHTHHHHHHHHHHHHHHH-HHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 46678999999999997554 34444
No 6
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=16.30 E-value=1.1e+02 Score=28.05 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6562 161 LFITIFLPLIILSMVYLSAIMLYMYR 186 (429)
Q Consensus 161 L~i~fiLP~~ii~~lY~s~i~LhiYk 186 (429)
.++.|++|+++++++|..++ ..+.|
T Consensus 191 ~~~~~~~p~~ii~~~y~~I~-~~l~~ 215 (467)
T 3uon_A 191 AIAAFYLPVIIMTVLYWHIS-RASKS 215 (467)
T ss_dssp HHHHTHHHHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 35668999999999887553 33444
No 7
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=14.41 E-value=1.9e+02 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.498 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6562 161 LFITIFLPLIILSMVYLSAIMLYMYR 186 (429)
Q Consensus 161 L~i~fiLP~~ii~~lY~s~i~LhiYk 186 (429)
+++.|++|++++++.|..+ +..+.|
T Consensus 186 ~~~~~~~p~~ii~~~y~~i-~~~l~~ 210 (464)
T 4dkl_A 186 FIFAFIMPVLIITVCYGLM-ILRLKS 210 (464)
T ss_dssp HHHTTHHHHHHHHHHHHHH-HHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4566899999999999765 344444
No 8
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=12.85 E-value=1.7e+02 Score=27.93 Aligned_cols=21 Identities=24% Similarity=0.675 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6562 161 LFITIFLPLIILSMVYLSAIM 181 (429)
Q Consensus 161 L~i~fiLP~~ii~~lY~s~i~ 181 (429)
.++.|++|++++++.|..++.
T Consensus 211 ~~~~~~iPl~ii~~~Y~~I~~ 231 (500)
T 2rh1_A 211 SIVSFYVPLVIMVFVYSRVFQ 231 (500)
T ss_dssp HHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999976643
No 9
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=12.24 E-value=1.3e+02 Score=27.52 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6562 161 LFITIFLPLIILSMVYLSAIMLYMYR 186 (429)
Q Consensus 161 L~i~fiLP~~ii~~lY~s~i~LhiYk 186 (429)
+++.|++|++++++.|..++ ..+.|
T Consensus 197 ~~~~~~~P~~ii~~~y~~I~-~~l~~ 221 (488)
T 3eml_A 197 FFACVLVPLLLMLGVYLRIF-LAARR 221 (488)
T ss_dssp HHHHTHHHHHHHHHHHHHHH-HHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45678999999999987653 33444
No 10
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=12.01 E-value=1.6e+02 Score=28.49 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6562 162 FITIFLPLIILSMVYLSAIM 181 (429)
Q Consensus 162 ~i~fiLP~~ii~~lY~s~i~ 181 (429)
++.|++|++++++.|..++.
T Consensus 225 ~~~~~lPl~ii~~~Y~~I~~ 244 (520)
T 3v2y_A 225 TTVFTLLLLSIVILYCRIYS 244 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999987653
Done!