RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6562
         (429 letters)



>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
            Lysophospholipid acyltransferase (LPLAT) superfamily
           member: acyltransferases of de novo and remodeling
           pathways of glycerophospholipid biosynthesis which
           catalyze the incorporation of an acyl group from either
           acylCoAs or acyl-acyl carrier proteins (acylACPs) into
           acceptors such as glycerol 3-phosphate, dihydroxyacetone
           phosphate or lyso-phosphatidic acid. Included in this
           suubgroup are such LPLATs as 2-acylglycerol
           O-acyltransferase (MGAT), and similar proteins.
          Length = 212

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 236 HGWVWHGYEVVNMDRIPDNSSALIIYYHGALPVDLYYFLSK-VFLVKNRLMHTVADNFLF 294
           H   +  YEV  ++ IPD   AL+++ HG LP+D     +  + L   RL   +AD+FLF
Sbjct: 1   HRKYFRVYEVRGLENIPDEGPALLVHPHGGLPIDGALLAAAFLLLFPGRLPRALADHFLF 60

Query: 295 RIPAAR 300
            +P  R
Sbjct: 61  PLPGLR 66


>gnl|CDD|227191 COG4854, COG4854, Predicted membrane protein [Function unknown].
          Length = 126

 Score = 28.6 bits (64), Expect = 3.2
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 167 LPLIILSMVYLSAIMLYMYRFGQWCMGTCLVINRAWVQSHPRQRLKEILTEEFT 220
             L  + M  + A + Y    G W +        A + S  ++R+ E++ +E T
Sbjct: 9   KILFAIVMA-VGAAVGYAVESGNWFIAVIAFFAGAALLSLVKRRVDEVVEDERT 61


>gnl|CDD|222356 pfam13741, MRP-S25, Mitochondrial ribosomal protein S25.  This is
           the family of fungal 37S mitochondrial ribosomal S25
           proteins.
          Length = 229

 Score = 29.3 bits (66), Expect = 3.3
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 76  HPWSLARP-INVPSKILDKHRKWSNI 100
           HPW LARP I V +   D    WS +
Sbjct: 107 HPWELARPKILVENDGNDVKCDWSRM 132


>gnl|CDD|185382 PRK15485, PRK15485, cobalt transport protein CbiQ; Provisional.
          Length = 225

 Score = 28.5 bits (64), Expect = 6.0
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 16/87 (18%)

Query: 148 IDFTLWVSWLLTPL-FITIFLPLIILSMVYLSAIMLYMYRFGQWCMGTCLVINRAWVQSH 206
           I    ++ WL  P  F+ + L  I+ S+      +L     G + +G    I+RA V   
Sbjct: 57  ISLWRYLRWLAIPFGFLLVGLLTILFSISRDPQSLLAGISIGPYWIG----ISRAGVV-- 110

Query: 207 PRQRLKEILTEEFTFWHRARTVIATMW 233
                    T   TFW     + AT+W
Sbjct: 111 ---------TANQTFWRSLAALAATLW 128


>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase.
          Length = 573

 Score = 28.7 bits (64), Expect = 7.0
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 205 SHPRQRLKEILTEEFTFWHRARTVIATMWDAHGWVWH 241
              RQR KEI TEEF   H  +     +WD +    H
Sbjct: 487 EDERQR-KEI-TEEFF--HYRKKTQRNLWDKYSAYEH 519


>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in
           feline sarcoma, Fujinami poultry sarcoma, and
           fes-related (Fes/Fps/Fer) proteins.  The Fps family
           consists of members Fps/Fes and Fer/Flk/Tyk3. They are
           cytoplasmic protein-tyrosine kinases implicated in
           signaling downstream from cytokines, growth factors and
           immune receptors.  Fes/Fps/Fer contains three
           coiled-coil regions, an SH2 (Src-homology-2) and a TK
           (tyrosine kinase catalytic) domain signature. Members
           here include: Fps/Fes, Fer, Kin-31, and  In general SH2
           domains are involved in signal transduction. They
           typically bind pTyr-containing ligands via two surface
           pockets, a pTyr and hydrophobic binding pocket, allowing
           proteins with SH2 domains to localize to tyrosine
           phosphorylated sites.
          Length = 90

 Score = 26.7 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 3/23 (13%)

Query: 261 YYHGALP-VDLYYFLSKV--FLV 280
           YYHG LP  D    L     FLV
Sbjct: 8   YYHGLLPREDAEELLKNDGDFLV 30


>gnl|CDD|180755 PRK06926, PRK06926, flagellar motor protein MotP; Reviewed.
          Length = 271

 Score = 28.1 bits (63), Expect = 8.4
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 41  IGIQAKRNPKQVKSKMNPALPDHRKK 66
           IG+Q+ +NP+ ++ K++         
Sbjct: 231 IGVQSGQNPRILEEKLSVFSSKEDWT 256


>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional.
          Length = 573

 Score = 28.2 bits (64), Expect = 10.0
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 153 WVSWLLTPLFITIFLPLI----ILSMVYLSAIMLYM 184
            +SWL+ P    I LP       L ++ L   + Y 
Sbjct: 436 MLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,376,165
Number of extensions: 2170346
Number of successful extensions: 2108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2103
Number of HSP's successfully gapped: 38
Length of query: 429
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 329
Effective length of database: 6,502,202
Effective search space: 2139224458
Effective search space used: 2139224458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.0 bits)