RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6562
         (429 letters)



>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1
          {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
          Length = 83

 Score = 25.8 bits (56), Expect = 3.4
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 7/53 (13%)

Query: 47 RNPKQVKSKMNPALPDHRKKSRNSGGKIPHPWSLARPINVPSKILDKHRKWSN 99
          R    +K K           +  +  +         P ++  ++L  H  WS 
Sbjct: 37 RTYVDLKDKWK----TLVHTASIAPQQRRGEPV---PQDLLDRVLAAHAYWSQ 82


>d1xpha1 d.169.1.1 (A:265-394) DC-SIGNR (DC-SIGN related receptor)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 25.8 bits (55), Expect = 5.7
 Identities = 9/71 (12%), Positives = 18/71 (25%)

Query: 185 YRFGQWCMGTCLVINRAWVQSHPRQRLKEILTEEFTFWHRARTVIATMWDAHGWVWHGYE 244
               Q      +VI  A  Q+  + +        +             W     +   ++
Sbjct: 29  VTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQ 88

Query: 245 VVNMDRIPDNS 255
                  P+NS
Sbjct: 89  RYWNSGEPNNS 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,708,308
Number of extensions: 81115
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 14
Length of query: 429
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,199,356
Effective search space: 408980396
Effective search space used: 408980396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.3 bits)