BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6564
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L1G|A Chain A, Human Alphab Crystallin
Length = 96
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+VNLDV+ F PEE H KHEER D+HGFISREF R+Y+IP VD I+S
Sbjct: 10 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITS 69
Query: 72 KLSSDGVLSIQAPKKAVEAGAGERAIPV 99
LSSDGVL++ P+K V ER IP+
Sbjct: 70 SLSSDGVLTVNGPRKQV--SGPERTIPI 95
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
Length = 175
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+VNLDV+ F PEE H KHEER D+HGFISREF R+Y+IP VD I+S
Sbjct: 76 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITS 135
Query: 72 KLSSDGVLSIQAPKKAVEAGAGERAIPVVQ 101
LSSDGVL++ P+K V ER IP+ +
Sbjct: 136 SLSSDGVLTVNGPRKQV--SGPERTIPITR 163
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
TV LDV+ F P+E KH ER D HG+ISREF RRY++P +VD +AI+
Sbjct: 13 TVYLDVKHFSPDELSVKVTDDYVEIQGKHGERQDDHGYISREFHRRYRLPSNVDQSAITC 72
Query: 72 KLSSDGVLSIQAPKKA-VEAGAGERAIPVVQ 101
LS+DG+L++ PK + ++AG G+R IPV +
Sbjct: 73 TLSADGLLTLCGPKTSGIDAGRGDRTIPVTR 103
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+ LDV+ F PE+ H KH ER D HG+ISREF RRY++P +VD +A+S
Sbjct: 15 VIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSC 74
Query: 72 KLSSDGVLSIQAPK--KAVEAGAGERAIPV 99
LS+DG+L+ PK V+AG ERAIPV
Sbjct: 75 SLSADGMLTFSGPKIPSGVDAGHSERAIPV 104
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+ LDV+ F PE+ H KH ER D HG+ISREF RRY++P +VD +A+S
Sbjct: 12 VIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSC 71
Query: 72 KLSSDGVLSIQAPK--KAVEAGAGERAIPV 99
LS+DG+L+ PK V+AG ERAIPV
Sbjct: 72 SLSADGMLTFSGPKIPSGVDAGHSERAIPV 101
>pdb|2WJ7|A Chain A, Human Alphab Crystallin
pdb|2WJ7|B Chain B, Human Alphab Crystallin
pdb|2WJ7|C Chain C, Human Alphab Crystallin
pdb|2WJ7|D Chain D, Human Alphab Crystallin
pdb|2WJ7|E Chain E, Human Alphab Crystallin
Length = 94
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 51/77 (66%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+VNLDV+ F PEE H KHEER D+HGFISREF R+Y+IP VD I+S
Sbjct: 13 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITS 72
Query: 72 KLSSDGVLSIQAPKKAV 88
LSSDGVL++ P+K V
Sbjct: 73 SLSSDGVLTVNGPRKQV 89
>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
Length = 94
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+VNLDV+ F PEE H KHEER D+HGFISREF R+Y+IP VD I+S
Sbjct: 13 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITS 72
Query: 72 KLSSDGVLSIQAPKKAV 88
SSDGVL++ P+K V
Sbjct: 73 SXSSDGVLTVNGPRKQV 89
>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
Length = 90
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+VNLDV+ F PEE H KHEER D+HGFISREF R+Y+IP VD I+S
Sbjct: 9 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITS 68
Query: 72 KLSSDGVLSIQAPKKAV 88
SSDGVL++ P+K V
Sbjct: 69 SXSSDGVLTVNGPRKQV 85
>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g
pdb|2Y1Z|B Chain B, Human Alphab Crystallin Acd R120g
Length = 94
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+VNLDV+ F PEE H KHEER D+HGFISREF +Y+IP VD I+S
Sbjct: 13 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHGKYRIPADVDPLTITS 72
Query: 72 KLSSDGVLSIQAPKKAV 88
+SSDGVL++ P+K V
Sbjct: 73 SMSSDGVLTVNGPRKQV 89
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
Length = 101
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 49/72 (68%)
Query: 12 TVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+V LDV+ F PEE HA+HEER D+HGFI+REF RRY++P VD A++S
Sbjct: 14 SVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTS 73
Query: 72 KLSSDGVLSIQA 83
LS +GVLSIQA
Sbjct: 74 ALSPEGVLSIQA 85
>pdb|3Q9P|A Chain A, Hspb1 Fragment
pdb|3Q9Q|A Chain A, Hspb1 Fragment Second Crystal Form
pdb|3Q9Q|B Chain B, Hspb1 Fragment Second Crystal Form
Length = 85
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 13 VNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSK 72
V+LDV F P+E KH R D+HG+ISR FTR+Y +P VD +SS
Sbjct: 11 VSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSS 70
Query: 73 LSSDGVLSIQAP 84
LS +G L+++AP
Sbjct: 71 LSPEGTLTVEAP 82
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 54 FTRRYKIPDSVDANAISSKLSSDGVLSIQAPKK 86
F RR+ +PDS DA+ I++ +GVL I+ PK+
Sbjct: 69 FHRRFALPDSADADGITAA-GRNGVLEIRIPKR 100
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
Axonopodis
Length = 100
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 54 FTRRYKIPDSVDANAISSKLSSDGVLSIQAPKK 86
F RR+ +PDS DA+ I++ +GVL I+ PK+
Sbjct: 66 FHRRFALPDSADADGITAA-GRNGVLEIRIPKR 97
>pdb|2BOL|A Chain A, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
Heat Shock Protein
pdb|2BOL|B Chain B, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
Heat Shock Protein
Length = 314
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 95 RAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126
R+IP+ P SVD N I + +++D VL I+AP
Sbjct: 158 RSIPL---PPSVDRNHIQATITTDDVLVIEAP 186
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 50 ISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84
+S R +P SVD N I + +++D VL I+AP
Sbjct: 152 MSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAP 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,551,694
Number of Sequences: 62578
Number of extensions: 112158
Number of successful extensions: 249
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 32
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)