Query psy6564
Match_columns 150
No_of_seqs 185 out of 1338
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:21:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06497 ACD_alphaA-crystallin_ 99.9 3.3E-25 7.2E-30 150.8 11.4 83 3-85 4-86 (86)
2 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 8.3E-25 1.8E-29 147.8 11.5 82 4-85 2-83 (83)
3 cd06498 ACD_alphaB-crystallin_ 99.9 1.9E-24 4.2E-29 146.5 11.1 83 4-86 2-84 (84)
4 cd06476 ACD_HspB2_like Alpha c 99.9 4.6E-24 1E-28 144.3 11.1 81 5-85 3-83 (83)
5 cd06475 ACD_HspB1_like Alpha c 99.9 8E-24 1.7E-28 144.0 11.3 84 1-84 2-85 (86)
6 cd06477 ACD_HspB3_Like Alpha c 99.9 1.6E-23 3.4E-28 141.7 10.8 80 5-84 3-82 (83)
7 PF00011 HSP20: Hsp20/alpha cr 99.9 2.3E-22 4.9E-27 139.5 14.0 97 3-100 1-102 (102)
8 KOG3591|consensus 99.9 2.3E-22 5E-27 152.7 12.3 102 3-105 66-167 (173)
9 cd06480 ACD_HspB8_like Alpha-c 99.9 1.8E-22 3.9E-27 138.6 9.9 82 4-85 10-91 (91)
10 cd06479 ACD_HspB7_like Alpha c 99.9 1.9E-22 4.2E-27 135.8 9.7 80 3-85 2-81 (81)
11 PRK10743 heat shock protein Ib 99.9 5.5E-22 1.2E-26 145.7 12.6 95 2-100 37-137 (137)
12 PRK11597 heat shock chaperone 99.9 6.6E-22 1.4E-26 145.9 12.9 97 2-102 35-137 (142)
13 COG0071 IbpA Molecular chapero 99.9 1.2E-21 2.5E-26 145.0 13.0 96 2-99 43-145 (146)
14 cd06526 metazoan_ACD Alpha-cry 99.9 8.4E-22 1.8E-26 132.8 10.2 78 7-85 5-83 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.9 7.9E-22 1.7E-26 134.4 10.1 80 6-85 4-87 (87)
16 cd06472 ACD_ScHsp26_like Alpha 99.9 3.1E-21 6.6E-26 132.3 11.1 83 2-85 2-92 (92)
17 cd06482 ACD_HspB10 Alpha cryst 99.9 2.2E-21 4.8E-26 132.2 10.2 83 3-85 2-87 (87)
18 cd06471 ACD_LpsHSP_like Group 99.8 3.5E-20 7.6E-25 127.0 11.0 82 2-85 3-93 (93)
19 cd06470 ACD_IbpA-B_like Alpha- 99.8 1.7E-19 3.6E-24 123.4 11.5 81 2-85 3-90 (90)
20 cd06464 ACD_sHsps-like Alpha-c 99.8 5.1E-19 1.1E-23 118.4 9.8 82 3-85 1-88 (88)
21 cd00298 ACD_sHsps_p23-like Thi 99.5 7.2E-14 1.6E-18 90.1 10.0 79 5-85 2-80 (80)
22 KOG0710|consensus 99.4 4.6E-13 9.9E-18 103.7 6.0 86 3-89 88-183 (196)
23 cd06469 p23_DYX1C1_like p23_li 99.2 8.2E-11 1.8E-15 77.5 8.8 70 5-88 2-71 (78)
24 PF00011 HSP20: Hsp20/alpha cr 99.2 1.8E-10 4E-15 79.5 9.2 84 53-142 8-102 (102)
25 cd06478 ACD_HspB4-5-6 Alpha-cr 99.2 1.3E-10 2.8E-15 78.3 7.3 70 53-127 8-83 (83)
26 PRK10743 heat shock protein Ib 99.2 1.6E-10 3.4E-15 84.9 8.3 82 53-142 46-137 (137)
27 PRK11597 heat shock chaperone 99.1 3.2E-10 7E-15 83.7 8.4 84 53-144 44-137 (142)
28 cd06497 ACD_alphaA-crystallin_ 99.1 3.1E-10 6.7E-15 77.0 7.1 70 53-127 11-86 (86)
29 cd06476 ACD_HspB2_like Alpha c 99.1 4.5E-10 9.7E-15 75.8 7.1 70 53-127 8-83 (83)
30 cd06498 ACD_alphaB-crystallin_ 99.1 5.2E-10 1.1E-14 75.6 7.2 71 53-128 8-84 (84)
31 KOG3591|consensus 99.0 1.8E-09 3.8E-14 82.2 9.5 90 53-148 73-168 (173)
32 COG0071 IbpA Molecular chapero 99.0 2.4E-09 5.1E-14 79.1 7.9 83 53-142 51-146 (146)
33 cd06526 metazoan_ACD Alpha-cry 98.9 2.2E-09 4.7E-14 72.0 5.9 70 53-127 8-83 (83)
34 cd06482 ACD_HspB10 Alpha cryst 98.9 3.4E-09 7.4E-14 72.2 6.7 69 53-126 9-86 (87)
35 cd06479 ACD_HspB7_like Alpha c 98.9 3.3E-09 7.1E-14 71.3 6.3 70 53-127 9-81 (81)
36 PF05455 GvpH: GvpH; InterPro 98.9 1.1E-08 2.4E-13 77.7 9.9 77 2-90 94-172 (177)
37 cd06481 ACD_HspB9_like Alpha c 98.9 6.5E-09 1.4E-13 70.6 6.9 70 53-127 8-87 (87)
38 cd06463 p23_like Proteins cont 98.9 2.2E-08 4.7E-13 65.6 9.1 75 5-88 2-76 (84)
39 cd06477 ACD_HspB3_Like Alpha c 98.9 7.6E-09 1.6E-13 69.9 6.9 69 53-126 8-82 (83)
40 cd06475 ACD_HspB1_like Alpha c 98.9 1.1E-08 2.4E-13 69.4 7.0 69 53-126 11-85 (86)
41 cd06472 ACD_ScHsp26_like Alpha 98.8 1.1E-08 2.5E-13 69.7 6.9 69 53-127 10-92 (92)
42 cd06471 ACD_LpsHSP_like Group 98.8 1.2E-08 2.6E-13 69.6 6.4 68 53-127 11-93 (93)
43 cd06480 ACD_HspB8_like Alpha-c 98.8 2.2E-08 4.8E-13 68.7 6.7 70 53-127 16-91 (91)
44 cd06466 p23_CS_SGT1_like p23_l 98.5 9.1E-07 2E-11 58.6 7.9 75 5-88 3-77 (84)
45 cd06470 ACD_IbpA-B_like Alpha- 98.5 6.4E-07 1.4E-11 61.0 6.9 69 53-127 12-90 (90)
46 cd06464 ACD_sHsps-like Alpha-c 98.4 8.1E-07 1.8E-11 58.8 6.0 69 53-127 8-88 (88)
47 PF04969 CS: CS domain; Inter 97.9 0.00032 7E-09 45.2 10.4 74 3-85 4-79 (79)
48 KOG0710|consensus 97.9 4.7E-05 1E-09 59.0 6.8 87 53-142 95-195 (196)
49 PF08190 PIH1: pre-RNA process 97.8 0.00013 2.8E-09 59.8 9.0 67 8-85 260-328 (328)
50 cd06489 p23_CS_hSgt1_like p23_ 97.6 0.00054 1.2E-08 45.6 8.2 74 5-87 3-76 (84)
51 cd06465 p23_hB-ind1_like p23_l 97.5 0.0028 6E-08 44.2 10.2 74 4-87 5-78 (108)
52 cd00298 ACD_sHsps_p23-like Thi 97.4 0.00057 1.2E-08 43.1 5.9 69 53-127 7-80 (80)
53 cd06467 p23_NUDC_like p23_like 97.4 0.0018 3.8E-08 42.8 7.9 72 5-88 4-77 (85)
54 cd06468 p23_CacyBP p23_like do 97.2 0.0067 1.5E-07 40.8 9.8 76 4-88 6-85 (92)
55 cd06469 p23_DYX1C1_like p23_li 97.2 0.0021 4.5E-08 41.8 6.8 64 53-129 7-70 (78)
56 cd06493 p23_NUDCD1_like p23_NU 97.1 0.0084 1.8E-07 40.0 9.2 72 5-88 4-77 (85)
57 cd06488 p23_melusin_like p23_l 97.1 0.012 2.5E-07 39.5 9.6 76 4-88 5-80 (87)
58 cd06463 p23_like Proteins cont 96.4 0.041 8.9E-07 35.3 8.0 69 53-129 7-75 (84)
59 cd00237 p23 p23 binds heat sho 96.2 0.13 2.8E-06 36.0 10.2 73 5-88 7-79 (106)
60 cd06494 p23_NUDCD2_like p23-li 96.0 0.12 2.7E-06 35.3 9.1 72 4-88 10-83 (93)
61 PLN03088 SGT1, suppressor of 94.8 0.2 4.3E-06 41.9 8.4 74 5-87 162-235 (356)
62 PF04969 CS: CS domain; Inter 93.5 0.8 1.7E-05 28.9 7.6 68 53-127 11-79 (79)
63 cd06466 p23_CS_SGT1_like p23_l 93.4 0.61 1.3E-05 30.2 7.0 68 54-129 9-76 (84)
64 PF14913 DPCD: DPCD protein fa 93.4 0.5 1.1E-05 36.6 7.3 72 3-87 90-170 (194)
65 cd06492 p23_mNUDC_like p23-lik 93.3 1.1 2.3E-05 30.1 8.2 70 6-87 5-78 (87)
66 cd06467 p23_NUDC_like p23_like 92.2 0.63 1.4E-05 30.3 5.8 67 53-129 9-76 (85)
67 PF05455 GvpH: GvpH; InterPro 91.1 0.63 1.4E-05 35.7 5.4 68 54-132 104-172 (177)
68 cd06490 p23_NCB5OR p23_like do 90.8 3.5 7.5E-05 27.5 10.2 74 5-88 4-80 (87)
69 cd06494 p23_NUDCD2_like p23-li 89.1 2.5 5.4E-05 28.8 6.6 67 53-129 16-82 (93)
70 cd06495 p23_NUDCD3_like p23-li 89.0 5.9 0.00013 27.5 9.5 74 5-87 10-86 (102)
71 KOG1309|consensus 88.7 1.9 4.1E-05 33.3 6.3 75 3-86 7-81 (196)
72 PF08190 PIH1: pre-RNA process 88.0 2.4 5.2E-05 34.5 7.1 65 53-126 262-327 (328)
73 cd06493 p23_NUDCD1_like p23_NU 86.2 5.6 0.00012 26.1 6.9 67 53-129 9-76 (85)
74 cd06468 p23_CacyBP p23_like do 82.9 8.9 0.00019 25.3 6.8 70 54-129 13-84 (92)
75 PF13349 DUF4097: Domain of un 80.0 20 0.00043 25.8 9.1 58 24-82 86-147 (166)
76 cd06465 p23_hB-ind1_like p23_l 67.3 35 0.00076 23.2 6.6 67 54-129 12-78 (108)
77 PF04972 BON: BON domain; Int 65.6 15 0.00031 22.4 4.0 24 18-41 12-35 (64)
78 cd06489 p23_CS_hSgt1_like p23_ 64.0 27 0.00059 22.5 5.3 61 62-129 16-76 (84)
79 KOG2265|consensus 63.1 42 0.00092 25.7 6.7 67 10-88 29-97 (179)
80 KOG3158|consensus 59.8 52 0.0011 25.2 6.7 72 7-89 15-86 (180)
81 CHL00140 rpl6 ribosomal protei 56.0 51 0.0011 25.0 6.2 44 22-84 12-55 (178)
82 cd06492 p23_mNUDC_like p23-lik 55.6 58 0.0013 21.6 6.4 67 53-129 9-78 (87)
83 PF00347 Ribosomal_L6: Ribosom 52.3 31 0.00066 21.8 3.9 46 22-84 2-47 (77)
84 TIGR03654 L6_bact ribosomal pr 51.2 72 0.0016 24.1 6.4 44 22-84 11-54 (175)
85 TIGR02856 spore_yqfC sporulati 50.4 21 0.00046 23.9 3.0 58 54-128 5-62 (85)
86 PRK05518 rpl6p 50S ribosomal p 50.2 70 0.0015 24.4 6.2 47 20-84 11-57 (180)
87 PRK05498 rplF 50S ribosomal pr 49.8 66 0.0014 24.3 6.0 44 22-84 12-55 (178)
88 PF08845 SymE_toxin: Toxin Sym 49.6 24 0.00053 21.9 2.9 22 16-37 34-56 (57)
89 cd06488 p23_melusin_like p23_l 47.8 77 0.0017 20.7 6.0 61 62-129 19-79 (87)
90 TIGR03653 arch_L6P archaeal ri 47.6 97 0.0021 23.4 6.5 45 22-84 7-51 (170)
91 PTZ00179 60S ribosomal protein 46.9 56 0.0012 25.1 5.2 47 22-84 12-58 (189)
92 PTZ00027 60S ribosomal protein 45.7 84 0.0018 24.2 6.0 52 17-84 8-59 (190)
93 PF08308 PEGA: PEGA domain; I 44.1 76 0.0016 19.6 4.9 32 8-39 34-66 (71)
94 PF07873 YabP: YabP family; I 40.3 21 0.00045 22.5 1.6 24 18-41 21-44 (66)
95 KOG1667|consensus 39.7 2.1E+02 0.0046 23.5 7.6 77 5-89 220-296 (320)
96 cd00503 Frataxin Frataxin is a 37.6 36 0.00077 23.7 2.6 18 66-84 27-44 (105)
97 PF12992 DUF3876: Domain of un 35.2 1.5E+02 0.0032 20.3 5.5 36 2-37 28-68 (95)
98 PRK05498 rplF 50S ribosomal pr 34.1 39 0.00084 25.6 2.5 28 55-88 6-33 (178)
99 TIGR03421 FeS_CyaY iron donor 33.7 39 0.00084 23.4 2.3 17 68-85 26-42 (102)
100 PRK00446 cyaY frataxin-like pr 33.3 41 0.00088 23.4 2.3 17 68-85 28-44 (105)
101 PRK11198 LysM domain/BON super 32.0 72 0.0016 23.3 3.6 25 18-42 38-62 (147)
102 TIGR02892 spore_yabP sporulati 31.8 39 0.00085 22.7 2.0 25 16-40 18-42 (85)
103 KOG3413|consensus 30.3 27 0.00059 26.0 1.1 22 62-84 67-88 (156)
104 PF01491 Frataxin_Cyay: Fratax 28.9 53 0.0012 22.8 2.3 17 67-84 30-46 (109)
105 PF13285 DUF4073: Domain of un 28.5 1.8E+02 0.0038 21.8 5.0 47 22-68 51-97 (158)
106 PF13715 DUF4480: Domain of un 27.9 1.3E+02 0.0028 19.1 4.0 24 8-31 43-66 (88)
107 PF14913 DPCD: DPCD protein fa 27.5 84 0.0018 24.4 3.4 41 2-42 123-170 (194)
108 COG5091 SGT1 Suppressor of G2 27.4 36 0.00079 28.3 1.4 76 4-87 181-256 (368)
109 TIGR03422 mito_frataxin fratax 26.9 53 0.0011 22.6 2.0 14 70-84 30-43 (97)
110 PRK02913 hypothetical protein; 23.7 77 0.0017 23.7 2.4 22 106-127 104-126 (150)
111 KOG3260|consensus 23.5 1.8E+02 0.0039 22.7 4.5 34 6-39 81-114 (224)
112 cd02178 GH16_beta_agarase Beta 22.6 2.8E+02 0.006 21.8 5.7 37 27-63 60-110 (258)
113 PRK10568 periplasmic protein; 22.2 1.5E+02 0.0033 22.8 4.0 24 18-41 73-96 (203)
114 cd02175 GH16_lichenase lichena 22.0 2.7E+02 0.0059 21.1 5.4 41 21-63 30-80 (212)
115 TIGR00251 conserved hypothetic 21.2 2.2E+02 0.0049 19.0 4.2 38 4-42 1-41 (87)
116 PF14545 DBB: Dof, BCAP, and B 21.0 1.5E+02 0.0032 21.9 3.5 29 8-36 48-79 (142)
117 COG1965 CyaY Protein implicate 20.5 1E+02 0.0022 21.7 2.4 18 68-86 29-46 (106)
No 1
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.93 E-value=3.3e-25 Score=150.79 Aligned_cols=83 Identities=48% Similarity=0.886 Sum_probs=77.6
Q ss_pred eEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEE
Q psy6564 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQ 82 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~ 82 (150)
.+.++++.|.|.++||||+++||+|++.++.|+|+|++....++.+|.+++|+|+|.||.+||+++|+|+|+.||+|+|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 83 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFS 83 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEE
Confidence 57899999999999999999999999999999999998765566679889999999999999999999999679999999
Q ss_pred eec
Q psy6564 83 APK 85 (150)
Q Consensus 83 ~pk 85 (150)
+||
T Consensus 84 ~PK 86 (86)
T cd06497 84 GPK 86 (86)
T ss_pred ecC
Confidence 997
No 2
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.92 E-value=8.3e-25 Score=147.85 Aligned_cols=82 Identities=54% Similarity=0.923 Sum_probs=76.2
Q ss_pred EEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEe
Q psy6564 4 TTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQA 83 (150)
Q Consensus 4 i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~ 83 (150)
+.+++++|.|.++||||+++||+|++.++.|+|+|+++...++.+|.+++|.|+|.||.+||+++++|+|+.||+|+|++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~ 81 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISG 81 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEe
Confidence 67899999999999999999999999999999999987655566788899999999999999999999995699999999
Q ss_pred ec
Q psy6564 84 PK 85 (150)
Q Consensus 84 pk 85 (150)
||
T Consensus 82 PK 83 (83)
T cd06478 82 PR 83 (83)
T ss_pred cC
Confidence 97
No 3
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.92 E-value=1.9e-24 Score=146.45 Aligned_cols=83 Identities=53% Similarity=0.895 Sum_probs=76.6
Q ss_pred EEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEe
Q psy6564 4 TTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQA 83 (150)
Q Consensus 4 i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~ 83 (150)
+.+++++|.|.++||||+++||+|++.++.|+|+|+++...++.+|.+++|+|+|.||.+||+++|+|+|+.||+|+|++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~l 81 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCG 81 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEE
Confidence 57889999999999999999999999999999999987665666788999999999999999999999994499999999
Q ss_pred ecc
Q psy6564 84 PKK 86 (150)
Q Consensus 84 pk~ 86 (150)
||+
T Consensus 82 Pk~ 84 (84)
T cd06498 82 PRK 84 (84)
T ss_pred eCC
Confidence 985
No 4
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.91 E-value=4.6e-24 Score=144.30 Aligned_cols=81 Identities=47% Similarity=0.770 Sum_probs=74.6
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
..++++|.|.++||||+++||+|++.++.|+|+|+++...+..++.+++|+|+|.||.+||+++|+|+|+.||+|+|++|
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~P 82 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAP 82 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEec
Confidence 45788999999999999999999999999999999876656667889999999999999999999999944999999999
Q ss_pred c
Q psy6564 85 K 85 (150)
Q Consensus 85 k 85 (150)
|
T Consensus 83 r 83 (83)
T cd06476 83 R 83 (83)
T ss_pred C
Confidence 6
No 5
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.91 E-value=8e-24 Score=143.96 Aligned_cols=84 Identities=45% Similarity=0.765 Sum_probs=77.5
Q ss_pred CeeEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEE
Q psy6564 1 MLATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLS 80 (150)
Q Consensus 1 ~~~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~ 80 (150)
|.+|+|++++|.|.++||||+++||+|++.++.|+|+|+++...+..++..++|+|+|.||++||+++++|+|..||+|+
T Consensus 2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 2 MSEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred cceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 56899999999999999999999999999999999999987655566788889999999999999999999993399999
Q ss_pred EEee
Q psy6564 81 IQAP 84 (150)
Q Consensus 81 I~~p 84 (150)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 6
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.91 E-value=1.6e-23 Score=141.69 Aligned_cols=80 Identities=38% Similarity=0.725 Sum_probs=73.8
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
.+++++|.|.++||||+++||+|+++++.|+|+|+++...++.++.+++|+|+|.||.+|+.++|+|+|++||+|+|+++
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 46889999999999999999999999999999999876555677888899999999999999999999767999999986
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.90 E-value=2.3e-22 Score=139.49 Aligned_cols=97 Identities=29% Similarity=0.536 Sum_probs=79.1
Q ss_pred eEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEE-----EEEEEEEECCCCCCcCCcEEEecCCC
Q psy6564 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFIS-----REFTRRYKIPDSVDANAISSKLSSDG 77 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~-----r~f~r~~~LP~~vd~~~i~a~~~~dG 77 (150)
++.+++++|.|.++||||.++||+|+++++.|.|+|++.....+..+.. +.|.|+|.||.++|.++++|.| .||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCC
Confidence 5899999999999999999999999999999999999883333333333 4899999999999999999999 999
Q ss_pred EEEEEeeccccccCCCceEEEee
Q psy6564 78 VLSIQAPKKAVEAGAGERAIPVV 100 (150)
Q Consensus 78 vL~I~~pk~~~~~~~~~r~I~I~ 100 (150)
+|+|++||....+....+.|+|+
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 99999999988754568888874
No 8
>KOG3591|consensus
Probab=99.89 E-value=2.3e-22 Score=152.70 Aligned_cols=102 Identities=47% Similarity=0.758 Sum_probs=94.8
Q ss_pred eEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEE
Q psy6564 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQ 82 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~ 82 (150)
.+..++++|.|.+|+..|+|++|.|++.++.|.|+|+++++++++|+++|+|.|+|.||.+||++.|+++||.||+|+|+
T Consensus 66 ~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ 145 (173)
T KOG3591|consen 66 EIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIE 145 (173)
T ss_pred ccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCCCceEEEeecCCCC
Q psy6564 83 APKKAVEAGAGERAIPVVQTPDS 105 (150)
Q Consensus 83 ~pk~~~~~~~~~r~I~I~~~~~~ 105 (150)
+|+...... .+|.|+|+..+..
T Consensus 146 ap~~~~~~~-~er~ipI~~~~~~ 167 (173)
T KOG3591|consen 146 APKPPPKQD-NERSIPIEQVGPS 167 (173)
T ss_pred ccCCCCcCc-cceEEeEeecCcc
Confidence 999987643 6999999987543
No 9
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.88 E-value=1.8e-22 Score=138.61 Aligned_cols=82 Identities=35% Similarity=0.639 Sum_probs=76.1
Q ss_pred EEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEe
Q psy6564 4 TTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQA 83 (150)
Q Consensus 4 i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~ 83 (150)
+.+++++|.|.+|+.||+++||+|++.++.|+|+|+++.+.+++++.+++|+|+|.||.+||++.|+|.|+.||+|+|++
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 35678899999999999999999999999999999998776667899999999999999999999999997799999999
Q ss_pred ec
Q psy6564 84 PK 85 (150)
Q Consensus 84 pk 85 (150)
|.
T Consensus 90 P~ 91 (91)
T cd06480 90 PQ 91 (91)
T ss_pred CC
Confidence 83
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=1.9e-22 Score=135.78 Aligned_cols=80 Identities=31% Similarity=0.509 Sum_probs=72.0
Q ss_pred eEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEE
Q psy6564 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQ 82 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~ 82 (150)
++.|+++.|.|.++||||+|+||+|+++++.|+|+|+++... +..+.+|+|+|.||.+||+++|+|+|++||+|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~---~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD---GTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC---CCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEE
Confidence 478999999999999999999999999999999999986432 33567999999999999999999997689999999
Q ss_pred eec
Q psy6564 83 APK 85 (150)
Q Consensus 83 ~pk 85 (150)
+++
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 985
No 11
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.88 E-value=5.5e-22 Score=145.65 Aligned_cols=95 Identities=18% Similarity=0.416 Sum_probs=79.8
Q ss_pred eeEE-EcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEE-----EEEEEEECCCCCCcCCcEEEecC
Q psy6564 2 LATT-AAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISR-----EFTRRYKIPDSVDANAISSKLSS 75 (150)
Q Consensus 2 ~~i~-e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r-----~f~r~~~LP~~vd~~~i~a~~~~ 75 (150)
+++. +++++|.|.++||||+++||+|++++|.|+|+|+++...++.+|.++ +|+|+|.||.+||.++ |+| +
T Consensus 37 ~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~-~ 113 (137)
T PRK10743 37 YNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANL-V 113 (137)
T ss_pred EEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEE-e
Confidence 5777 48999999999999999999999999999999987654444455443 8999999999999995 999 9
Q ss_pred CCEEEEEeeccccccCCCceEEEee
Q psy6564 76 DGVLSIQAPKKAVEAGAGERAIPVV 100 (150)
Q Consensus 76 dGvL~I~~pk~~~~~~~~~r~I~I~ 100 (150)
||+|+|++||..++ ....|+|+|+
T Consensus 114 dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 114 NGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred CCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 99999999996433 2467888874
No 12
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.88 E-value=6.6e-22 Score=145.91 Aligned_cols=97 Identities=12% Similarity=0.348 Sum_probs=81.2
Q ss_pred eeEEE-cCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEE-----EEEEEEECCCCCCcCCcEEEecC
Q psy6564 2 LATTA-AEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISR-----EFTRRYKIPDSVDANAISSKLSS 75 (150)
Q Consensus 2 ~~i~e-~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r-----~f~r~~~LP~~vd~~~i~a~~~~ 75 (150)
+++.| +++.|.|.++||||+++||+|.+++|.|+|+|+++...++.+|+++ +|+|+|.||.+||.+ +|+| +
T Consensus 35 vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~-~ 111 (142)
T PRK11597 35 YNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF-V 111 (142)
T ss_pred EEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE-c
Confidence 57887 5789999999999999999999999999999987644344455544 799999999999998 6999 9
Q ss_pred CCEEEEEeeccccccCCCceEEEeecC
Q psy6564 76 DGVLSIQAPKKAVEAGAGERAIPVVQT 102 (150)
Q Consensus 76 dGvL~I~~pk~~~~~~~~~r~I~I~~~ 102 (150)
||+|+|++||..++ ....|+|+|+..
T Consensus 112 nGVL~I~lPK~~~~-~~~~rkI~I~~~ 137 (142)
T PRK11597 112 NGLLHIDLIRNEPE-AIAPQRIAISER 137 (142)
T ss_pred CCEEEEEEeccCcc-ccCCcEEEECCc
Confidence 99999999997433 246889999743
No 13
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-21 Score=144.99 Aligned_cols=96 Identities=22% Similarity=0.513 Sum_probs=83.0
Q ss_pred eeEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeee--cCCCceEE-----EEEEEEEECCCCCCcCCcEEEec
Q psy6564 2 LATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEER--SDQHGFIS-----REFTRRYKIPDSVDANAISSKLS 74 (150)
Q Consensus 2 ~~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~--~~~~~~~~-----r~f~r~~~LP~~vd~~~i~a~~~ 74 (150)
+++.++++.|.|.++||||+++||+|+++++.|+|+|+++.. .++.++.+ ++|+|+|.||..|+++.++|+|
T Consensus 43 vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~- 121 (146)
T COG0071 43 VDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY- 121 (146)
T ss_pred EEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe-
Confidence 689999999999999999999999999999999999998752 23444443 4899999999999999999999
Q ss_pred CCCEEEEEeeccccccCCCceEEEe
Q psy6564 75 SDGVLSIQAPKKAVEAGAGERAIPV 99 (150)
Q Consensus 75 ~dGvL~I~~pk~~~~~~~~~r~I~I 99 (150)
.||+|+|++||..+++ ...+.|.|
T Consensus 122 ~nGvL~I~lpk~~~~~-~~~~~i~I 145 (146)
T COG0071 122 KNGLLTVTLPKAEPEE-KKPKRIEI 145 (146)
T ss_pred eCcEEEEEEecccccc-ccCceeec
Confidence 9999999999998763 35666665
No 14
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=8.4e-22 Score=132.76 Aligned_cols=78 Identities=56% Similarity=0.956 Sum_probs=71.0
Q ss_pred cCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCC-CEEEEEeec
Q psy6564 7 AEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSD-GVLSIQAPK 85 (150)
Q Consensus 7 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~d-GvL~I~~pk 85 (150)
+++.|.|.++||||+++||+|+++++.|+|+|+++...+..++.+++|.|+|.||.+||+++++|+| .| |+|+|++||
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~-~~~GvL~I~~Pk 83 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSL-SSDGVLTIEAPK 83 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEe-CCCcEEEEEecC
Confidence 3469999999999999999999999999999998876554567888999999999999999999999 56 999999997
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=7.9e-22 Score=134.41 Aligned_cols=80 Identities=34% Similarity=0.615 Sum_probs=70.4
Q ss_pred EcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCC--Cce--EEEEEEEEEECCCCCCcCCcEEEecCCCEEEE
Q psy6564 6 AAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQ--HGF--ISREFTRRYKIPDSVDANAISSKLSSDGVLSI 81 (150)
Q Consensus 6 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~--~~~--~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I 81 (150)
+.++.|.|.++||||+++||+|+++++.|+|+|+++....+ ..| .+++|+|+|.||.+||.++|+|+|+.||+|+|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 83 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHI 83 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEE
Confidence 57889999999999999999999999999999987654322 233 34699999999999999999999988999999
Q ss_pred Eeec
Q psy6564 82 QAPK 85 (150)
Q Consensus 82 ~~pk 85 (150)
++|+
T Consensus 84 ~~P~ 87 (87)
T cd06481 84 RAPR 87 (87)
T ss_pred EcCC
Confidence 9996
No 16
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.86 E-value=3.1e-21 Score=132.27 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=71.9
Q ss_pred eeEEEcCCeEEEEEEeCCCCCCCeEEEEECC-EEEEEEEEeeec--CCCceE-----EEEEEEEEECCCCCCcCCcEEEe
Q psy6564 2 LATTAAEIEGTVNLDVQQFKPEEIDVKVVDK-YIVVHAKHEERS--DQHGFI-----SREFTRRYKIPDSVDANAISSKL 73 (150)
Q Consensus 2 ~~i~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~--~~~~~~-----~r~f~r~~~LP~~vd~~~i~a~~ 73 (150)
+++.|+++.|.|.++||||+++||+|+++++ .|+|+|++.... ....+. +.+|+|+|.||.+||.++++|+|
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~ 81 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL 81 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence 5789999999999999999999999999964 899999875432 223333 23899999999999999999999
Q ss_pred cCCCEEEEEeec
Q psy6564 74 SSDGVLSIQAPK 85 (150)
Q Consensus 74 ~~dGvL~I~~pk 85 (150)
+||+|+|++||
T Consensus 82 -~nGvL~I~lPK 92 (92)
T cd06472 82 -ENGVLTVTVPK 92 (92)
T ss_pred -ECCEEEEEecC
Confidence 89999999997
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.86 E-value=2.2e-21 Score=132.24 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=71.9
Q ss_pred eEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCC-C--ceEEEEEEEEEECCCCCCcCCcEEEecCCCEE
Q psy6564 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQ-H--GFISREFTRRYKIPDSVDANAISSKLSSDGVL 79 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~-~--~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL 79 (150)
....+++.|.|.++||||+++||+|+++++.|+|+|+++..... + .+.+.+|.|+|.||.+||.++|+|+|..+|+|
T Consensus 2 ~~~~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l 81 (87)
T cd06482 2 AASCDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVV 81 (87)
T ss_pred cccccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEE
Confidence 45678999999999999999999999999999999998654322 2 35556999999999999999999999666699
Q ss_pred EEEeec
Q psy6564 80 SIQAPK 85 (150)
Q Consensus 80 ~I~~pk 85 (150)
+|..|+
T Consensus 82 ~i~~~~ 87 (87)
T cd06482 82 KIETPC 87 (87)
T ss_pred EEeeCC
Confidence 999985
No 18
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.84 E-value=3.5e-20 Score=126.99 Aligned_cols=82 Identities=34% Similarity=0.602 Sum_probs=71.7
Q ss_pred eeEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecC----CCceEEE-----EEEEEEECCCCCCcCCcEEE
Q psy6564 2 LATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSD----QHGFISR-----EFTRRYKIPDSVDANAISSK 72 (150)
Q Consensus 2 ~~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~----~~~~~~r-----~f~r~~~LP~~vd~~~i~a~ 72 (150)
+++.|+++.|.|.++||||+++||+|.++++.|+|+|+++...+ ...+.++ +|.|+|.|| +++.+.++|+
T Consensus 3 ~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~ 81 (93)
T cd06471 3 TDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAK 81 (93)
T ss_pred eeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEE
Confidence 68999999999999999999999999999999999999875321 1234332 799999998 7999999999
Q ss_pred ecCCCEEEEEeec
Q psy6564 73 LSSDGVLSIQAPK 85 (150)
Q Consensus 73 ~~~dGvL~I~~pk 85 (150)
| .||+|+|++||
T Consensus 82 ~-~dGvL~I~lPK 93 (93)
T cd06471 82 Y-ENGVLKITLPK 93 (93)
T ss_pred E-ECCEEEEEEcC
Confidence 9 99999999997
No 19
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.82 E-value=1.7e-19 Score=123.43 Aligned_cols=81 Identities=19% Similarity=0.473 Sum_probs=69.9
Q ss_pred eeEEEcC-CeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecC-CCceEE-----EEEEEEEECCCCCCcCCcEEEec
Q psy6564 2 LATTAAE-IEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSD-QHGFIS-----REFTRRYKIPDSVDANAISSKLS 74 (150)
Q Consensus 2 ~~i~e~~-~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~-~~~~~~-----r~f~r~~~LP~~vd~~~i~a~~~ 74 (150)
+++.+++ +.|.|.++||||+++||+|.++++.|+|+|+++.... ..+|.+ .+|.|+|.||.++|.. +|+|
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~- 79 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL- 79 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-
Confidence 5788864 9999999999999999999999999999999876543 334443 3899999999999975 8999
Q ss_pred CCCEEEEEeec
Q psy6564 75 SDGVLSIQAPK 85 (150)
Q Consensus 75 ~dGvL~I~~pk 85 (150)
+||+|+|++|+
T Consensus 80 ~~GvL~I~l~~ 90 (90)
T cd06470 80 ENGLLTIDLER 90 (90)
T ss_pred eCCEEEEEEEC
Confidence 99999999985
No 20
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.80 E-value=5.1e-19 Score=118.38 Aligned_cols=82 Identities=29% Similarity=0.522 Sum_probs=72.2
Q ss_pred eEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCC------ceEEEEEEEEEECCCCCCcCCcEEEecCC
Q psy6564 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQH------GFISREFTRRYKIPDSVDANAISSKLSSD 76 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~------~~~~r~f~r~~~LP~~vd~~~i~a~~~~d 76 (150)
++.++++.|.+.++||||++++|+|++.++.|.|+|++....... ++..+.|.|+|.||.++|.+.++|.| .|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~-~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-EN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE-eC
Confidence 367899999999999999999999999999999999987654321 23345899999999999999999999 89
Q ss_pred CEEEEEeec
Q psy6564 77 GVLSIQAPK 85 (150)
Q Consensus 77 GvL~I~~pk 85 (150)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999996
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.55 E-value=7.2e-14 Score=90.09 Aligned_cols=79 Identities=32% Similarity=0.518 Sum_probs=70.4
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
.++++.|.|.+++||+.++++.|.+.++.|.|+|++..... .....+.|.++|.||..++++.++|.+ .+|+|+|.+|
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~L~~~i~~~~~~~~~-~~~~l~i~l~ 79 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE-RERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLP 79 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc-ceEeeeeEEEEEECCCCcCHHHCEEEE-ECCEEEEEEc
Confidence 56789999999999999999999999999999998875433 334456899999999999999999999 7999999998
Q ss_pred c
Q psy6564 85 K 85 (150)
Q Consensus 85 k 85 (150)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 6
No 22
>KOG0710|consensus
Probab=99.40 E-value=4.6e-13 Score=103.72 Aligned_cols=86 Identities=22% Similarity=0.489 Sum_probs=73.9
Q ss_pred eEEEcCCeEEEEEEeCCCCCCCeEEEEECC-EEEEEEEEeeecCC----CceEE-----EEEEEEEECCCCCCcCCcEEE
Q psy6564 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDK-YIVVHAKHEERSDQ----HGFIS-----REFTRRYKIPDSVDANAISSK 72 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~----~~~~~-----r~f~r~~~LP~~vd~~~i~a~ 72 (150)
.+.+..+.|.+.+++||+..++++|.++++ .|+|+|++....++ ..+.. ..|.|+|.||..++.+.|+|.
T Consensus 88 ~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~ 167 (196)
T KOG0710|consen 88 DVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAE 167 (196)
T ss_pred ccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHH
Confidence 467899999999999999999999999977 79999987754432 11221 289999999999999999999
Q ss_pred ecCCCEEEEEeeccccc
Q psy6564 73 LSSDGVLSIQAPKKAVE 89 (150)
Q Consensus 73 ~~~dGvL~I~~pk~~~~ 89 (150)
| .||+|+|.+||..+.
T Consensus 168 ~-~nGVL~VvvpK~~~~ 183 (196)
T KOG0710|consen 168 M-ENGVLTVVVPKLEPL 183 (196)
T ss_pred h-hCCeEEEEEeccccc
Confidence 9 899999999999874
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.23 E-value=8.2e-11 Score=77.48 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=63.7
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
.++++.+.|.+++||++++++.|.+.++.|.|++ ..|.+++.||..||+++.++++ .+|.|.|+++
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-------------~~~~~~~~l~~~I~~e~~~~~~-~~~~l~i~L~ 67 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-------------PPYLFELDLAAPIDDEKSSAKI-GNGVLVFTLV 67 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcC-------------CCEEEEEeCcccccccccEEEE-eCCEEEEEEE
Confidence 4678899999999999999999999999999987 1378999999999999999999 8999999999
Q ss_pred cccc
Q psy6564 85 KKAV 88 (150)
Q Consensus 85 k~~~ 88 (150)
|..+
T Consensus 68 K~~~ 71 (78)
T cd06469 68 KKEP 71 (78)
T ss_pred eCCC
Confidence 9753
No 24
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.19 E-value=1.8e-10 Score=79.49 Aligned_cols=84 Identities=31% Similarity=0.512 Sum_probs=61.3
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC-----------ceEEEeecCCCCCCccccccccCCCCeE
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG-----------ERAIPVVQTPDSVDANAISSKLSSDGVL 121 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~-----------~r~I~I~~~~~~vd~~~v~~~~~~~GvL 121 (150)
.|.=.+.|| ++++++|+.++ .++.|+|++.+........ .|.+++... +|.+++.|.+. ||+|
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~---vd~~~i~a~~~-~GvL 81 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPED---VDPDKIKASYE-NGVL 81 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STT---B-GGG-EEEET-TSEE
T ss_pred EEEEEEECC-CCChHHEEEEE-ecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCc---CCcceEEEEec-CCEE
Confidence 577889997 99999999999 8999999999982221111 344555443 99999999996 9999
Q ss_pred EEEeecccccCCCCceEEeee
Q psy6564 122 SIQAPKKAVEGGAGERAIPVV 142 (150)
Q Consensus 122 ~i~~pk~~~~~~~~~r~I~i~ 142 (150)
+|++||.......+.|.|+|+
T Consensus 82 ~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 82 TITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEccccccCCCCeEEEeC
Confidence 999999976655567999985
No 25
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.17 E-value=1.3e-10 Score=78.35 Aligned_cols=70 Identities=27% Similarity=0.452 Sum_probs=55.9
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC------ceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG------ERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|.=.+.|| ++++++|+.++ .+|.|+|++.+....++.. .|.+.+... +|.+++.|+|+.||||+|++|
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~---vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKHEERQDEHGFISREFHRRYRLPPG---VDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCC---cChHHeEEEECCCCEEEEEec
Confidence 578889996 99999999999 8999999998754332111 344555444 999999999966999999999
Q ss_pred c
Q psy6564 127 K 127 (150)
Q Consensus 127 k 127 (150)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 8
No 26
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.16 E-value=1.6e-10 Score=84.90 Aligned_cols=82 Identities=11% Similarity=0.187 Sum_probs=60.8
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCC----------CCCccccccccCCCCeEE
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPD----------SVDANAISSKLSSDGVLS 122 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~----------~vd~~~v~~~~~~~GvL~ 122 (150)
.|.=...|| |++.++|+.++ .+|+|+|++.+.... ++...+..++.++ .||.+ .|++. ||||+
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~~-dGVL~ 118 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITA-QDNLLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--GANLV-NGLLY 118 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--cCEEe-CCEEE
Confidence 577788896 99999999999 899999999876543 2333444443333 27887 48998 99999
Q ss_pred EEeecccccCCCCceEEeee
Q psy6564 123 IQAPKKAVEGGAGERAIPVV 142 (150)
Q Consensus 123 i~~pk~~~~~~~~~r~I~i~ 142 (150)
|++||...+ .++.|+|+|+
T Consensus 119 I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 119 IDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred EEEeCCCcc-ccCCeEEeeC
Confidence 999996422 2345999984
No 27
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.12 E-value=3.2e-10 Score=83.74 Aligned_cols=84 Identities=10% Similarity=0.208 Sum_probs=64.4
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCC----------CCccccccccCCCCeEE
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDS----------VDANAISSKLSSDGVLS 122 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~----------vd~~~v~~~~~~~GvL~ 122 (150)
.|.=+..|| |++.++|+..+ .+|+|+|++.+..+. ++.+.+..++.++. +|.+ +|++. ||||+
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~-nGVL~ 116 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQL-EGTRLTVKGTPEQPE--KEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFV-NGLLH 116 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEcccc--CCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEc-CCEEE
Confidence 578888896 99999999999 899999999876433 34556666655442 6766 69998 99999
Q ss_pred EEeecccccCCCCceEEeeeec
Q psy6564 123 IQAPKKAVEGGAGERAIPVVQT 144 (150)
Q Consensus 123 i~~pk~~~~~~~~~r~I~i~~~ 144 (150)
|++||...+ ..+.|+|+|+..
T Consensus 117 I~lPK~~~~-~~~~rkI~I~~~ 137 (142)
T PRK11597 117 IDLIRNEPE-AIAPQRIAISER 137 (142)
T ss_pred EEEeccCcc-ccCCcEEEECCc
Confidence 999997422 234599999754
No 28
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.11 E-value=3.1e-10 Score=77.03 Aligned_cols=70 Identities=26% Similarity=0.447 Sum_probs=55.0
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC------ceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG------ERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|.=.+.| +++++++|+.++ .+|.|+|++.+....++.. .|.+.+... +|.++++|+|+.||||+|++|
T Consensus 11 ~~~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~---Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 11 KFTIYLDV-KHFSPEDLTVKV-LDDYVEIHGKHSERQDDHGYISREFHRRYRLPSN---VDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEEEEEEC-CCCCHHHeEEEE-ECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCC---CChHHeEEEeCCCCEEEEEec
Confidence 57778888 699999999999 8999999998654332111 334444433 999999999966999999999
Q ss_pred c
Q psy6564 127 K 127 (150)
Q Consensus 127 k 127 (150)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 8
No 29
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.09 E-value=4.5e-10 Score=75.81 Aligned_cols=70 Identities=24% Similarity=0.376 Sum_probs=55.1
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC------ceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG------ERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|.=.+.| +++.+++|+.++ .||.|+|++.+....+..+ .|.+.+.. .+|+++++|+|+.||+|+|++|
T Consensus 8 ~y~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~---~vd~~~v~A~~~~dGvL~I~~P 82 (83)
T cd06476 8 KYQVFLDV-CHFTPDEITVRT-VDNLLEVSARHPQRMDRHGFVSREFTRTYILPM---DVDPLLVRASLSHDGILCIQAP 82 (83)
T ss_pred eEEEEEEc-CCCCHHHeEEEE-ECCEEEEEEEEcceecCCCEEEEEEEEEEECCC---CCChhhEEEEecCCCEEEEEec
Confidence 56777888 689999999999 8999999998754432212 23344443 3999999999977999999999
Q ss_pred c
Q psy6564 127 K 127 (150)
Q Consensus 127 k 127 (150)
|
T Consensus 83 r 83 (83)
T cd06476 83 R 83 (83)
T ss_pred C
Confidence 7
No 30
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.08 E-value=5.2e-10 Score=75.62 Aligned_cols=71 Identities=24% Similarity=0.442 Sum_probs=56.0
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC------ceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG------ERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|.=.+.| +++++++|+..+ .+|.|+|++.+....++.. .|.+.+... +|.++++|+|++||||+|++|
T Consensus 8 ~~~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~---vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 8 KFSVNLDV-KHFSPEELKVKV-LGDFIEIHGKHEERQDEHGFISREFQRKYRIPAD---VDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred eEEEEEEC-CCCCHHHeEEEE-ECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCC---CChHHcEEEeCCCCEEEEEEe
Confidence 57778888 699999999999 8999999997654332221 344445443 999999999977999999999
Q ss_pred cc
Q psy6564 127 KK 128 (150)
Q Consensus 127 k~ 128 (150)
|+
T Consensus 83 k~ 84 (84)
T cd06498 83 RK 84 (84)
T ss_pred CC
Confidence 84
No 31
>KOG3591|consensus
Probab=99.04 E-value=1.8e-09 Score=82.23 Aligned_cols=90 Identities=29% Similarity=0.463 Sum_probs=70.9
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC------ceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG------ERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|.-.+.. ..+.+++|+... .|+.|.|++...+...+-+ .|.+.+... ||+++|.|.|++||+|||+||
T Consensus 73 ~F~V~lDV-~~F~PeEl~Vk~-~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~---vdp~~V~S~LS~dGvLtI~ap 147 (173)
T KOG3591|consen 73 KFEVNLDV-HQFKPEELKVKT-DDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPED---VDPTSVTSTLSSDGVLTIEAP 147 (173)
T ss_pred cEEEEEEc-ccCcccceEEEe-CCCEEEEEeeeccccCCCCeEEEEEEEEecCCCC---CChhheEEeeCCCceEEEEcc
Confidence 57777777 678899999999 8999999998877642211 345555544 999999999999999999999
Q ss_pred cccccCCCCceEEeeeeccccC
Q psy6564 127 KKAVEGGAGERAIPVVQTTIDQ 148 (150)
Q Consensus 127 k~~~~~~~~~r~I~i~~~~~~~ 148 (150)
|+..... .+|.|||+..+..|
T Consensus 148 ~~~~~~~-~er~ipI~~~~~~~ 168 (173)
T KOG3591|consen 148 KPPPKQD-NERSIPIEQVGPSA 168 (173)
T ss_pred CCCCcCc-cceEEeEeecCccc
Confidence 9874443 57999999886553
No 32
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.4e-09 Score=79.11 Aligned_cols=83 Identities=23% Similarity=0.397 Sum_probs=64.6
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC-------------ceEEEeecCCCCCCccccccccCCCC
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG-------------ERAIPVVQTPDSVDANAISSKLSSDG 119 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~-------------~r~I~I~~~~~~vd~~~v~~~~~~~G 119 (150)
+|.=.+.| +|++.++|+.++ .++.|+|++.+....+.+. .|.|++... ++++.+.|+++ ||
T Consensus 51 ~~~I~~el-PG~~kedI~I~~-~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~---v~~~~~~A~~~-nG 124 (146)
T COG0071 51 EYRITAEL-PGVDKEDIEITV-EGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEK---VDPEVIKAKYK-NG 124 (146)
T ss_pred EEEEEEEc-CCCChHHeEEEE-ECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccc---ccccceeeEee-Cc
Confidence 67788888 699999999999 8999999999986332122 345555544 89889999999 99
Q ss_pred eEEEEeecccccCCCCceEEeee
Q psy6564 120 VLSIQAPKKAVEGGAGERAIPVV 142 (150)
Q Consensus 120 vL~i~~pk~~~~~~~~~r~I~i~ 142 (150)
+|+|++||...+. ...++|.|+
T Consensus 125 vL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 125 LLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred EEEEEEecccccc-ccCceeecC
Confidence 9999999987443 344778763
No 33
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.94 E-value=2.2e-09 Score=72.02 Aligned_cols=70 Identities=30% Similarity=0.469 Sum_probs=56.9
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccC------CCceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAG------AGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~------~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|.=.+.|| ++.+++|+..+ .++.|+|++.+...... .-.|.|.+... +|.++++|+|++||+|+|++|
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v-~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~---vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKV-SDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEG---VDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEE-ECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCC---CChHHeEEEeCCCcEEEEEec
Confidence 688899997 69999999999 89999999998765421 11344555444 999999999995699999999
Q ss_pred c
Q psy6564 127 K 127 (150)
Q Consensus 127 k 127 (150)
|
T Consensus 83 k 83 (83)
T cd06526 83 K 83 (83)
T ss_pred C
Confidence 7
No 34
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=98.93 E-value=3.4e-09 Score=72.17 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=56.0
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC---------ceEEEeecCCCCCCccccccccCCCCeEEE
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG---------ERAIPVVQTPDSVDANAISSKLSSDGVLSI 123 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~---------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i 123 (150)
.|.-+..|| ++++++|+.++ .+|.|+|++.+....+... .|.|.+... ||.+++.|+|+++|||+|
T Consensus 9 ~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~---Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKV-KDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG---VDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC---cChHHcEEEEcCCCEEEE
Confidence 577788896 99999999999 8999999999876443211 345555444 999999999998889999
Q ss_pred Eee
Q psy6564 124 QAP 126 (150)
Q Consensus 124 ~~p 126 (150)
.+|
T Consensus 84 ~~~ 86 (87)
T cd06482 84 ETP 86 (87)
T ss_pred eeC
Confidence 988
No 35
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=98.93 E-value=3.3e-09 Score=71.32 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=56.3
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccC---CCceEEEeecCCCCCCccccccccCCCCeEEEEeec
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAG---AGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPK 127 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~---~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk 127 (150)
.|.=.+.|| ++++++|+.++ .+|.|+|++.+...... .-.|.+.+... +|++++.|+|..||+|+|++++
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~---vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKLASDGTVMNTFTHKCQLPED---VDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEeccCCCEEEEEEEEEECCCC---cCHHHeEEEecCCCEEEEEecC
Confidence 577788996 99999999999 89999999988643310 11456666655 9999999999669999999986
No 36
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.93 E-value=1.1e-08 Score=77.73 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=61.3
Q ss_pred eeEEEcCC-eEEEEEEeCCCCCCC-eEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEE
Q psy6564 2 LATTAAEI-EGTVNLDVQQFKPEE-IDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVL 79 (150)
Q Consensus 2 ~~i~e~~~-~~~v~~dlpG~~~ed-I~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL 79 (150)
+.+.+.++ .++|.++|||+++++ |.|.++.+.+.|..+... .|.+++.||.. +++.++++| +||+|
T Consensus 94 vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~----------~~~krv~L~~~-~~e~~~~t~-nNgIL 161 (177)
T PF05455_consen 94 VDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE----------KYLKRVALPWP-DPEITSATF-NNGIL 161 (177)
T ss_pred eeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC----------ceEeeEecCCC-ccceeeEEE-eCceE
Confidence 46677666 799999999999888 999999665555443322 36789999977 688899999 89999
Q ss_pred EEEeecccccc
Q psy6564 80 SIQAPKKAVEA 90 (150)
Q Consensus 80 ~I~~pk~~~~~ 90 (150)
.|.+-+..+..
T Consensus 162 EIri~~~~~~~ 172 (177)
T PF05455_consen 162 EIRIRRTEESS 172 (177)
T ss_pred EEEEeecCCCC
Confidence 99999887653
No 37
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=98.89 E-value=6.5e-09 Score=70.63 Aligned_cols=70 Identities=20% Similarity=0.387 Sum_probs=54.8
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC----------ceEEEeecCCCCCCccccccccCCCCeEE
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG----------ERAIPVVQTPDSVDANAISSKLSSDGVLS 122 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~----------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~ 122 (150)
.|.=.+.| +++.+++|+.++ .++.|+|++.+....+... .|.|.+... ||.+++.|+++.||||+
T Consensus 8 ~~~v~~dl-pG~~~edI~V~v-~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~---Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 8 GFSLKLDV-RGFSPEDLSVRV-DGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEH---VDPEAVTCSLSPSGHLH 82 (87)
T ss_pred eEEEEEEC-CCCChHHeEEEE-ECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCC---cChHHeEEEeCCCceEE
Confidence 56777778 699999999999 8999999999865442221 344444433 99999999996699999
Q ss_pred EEeec
Q psy6564 123 IQAPK 127 (150)
Q Consensus 123 i~~pk 127 (150)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99996
No 38
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.89 E-value=2.2e-08 Score=65.62 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=65.8
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
.++++.+.|.+.+||..++++.|.+.++.|.|++.... + ..|...+.|+..|++++.++++ .+|.|.|.++
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~---~-----~~~~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~ 72 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG---G-----KEYLLEGELFGPIDPEESKWTV-EDRKIEITLK 72 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC---C-----CceEEeeEccCccchhhcEEEE-eCCEEEEEEE
Confidence 35788999999999999999999999999999987531 1 2478889999999999999999 8999999999
Q ss_pred cccc
Q psy6564 85 KKAV 88 (150)
Q Consensus 85 k~~~ 88 (150)
|..+
T Consensus 73 K~~~ 76 (84)
T cd06463 73 KKEP 76 (84)
T ss_pred ECCC
Confidence 9864
No 39
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.88 E-value=7.6e-09 Score=69.86 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=54.2
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC------ceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG------ERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|.=++.| +++++++|+..+ .+|.|+|++.+....+..+ .|.+++. ..||.++++|+|..||||+|++|
T Consensus 8 ~~~v~~dl-pG~~~edI~V~v-~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP---~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 8 MFQILLDV-VQFRPEDIIIQV-FEGWLLIKGQHGVRMDEHGFISRSFTRQYQLP---DGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred eEEEEEEc-CCCCHHHeEEEE-ECCEEEEEEEEccccCCCCEEEEEEEEEEECC---CCcchheEEEEEcCCCEEEEEec
Confidence 57778888 689999999999 8999999999876432222 2333443 34999999999866999999987
No 40
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=98.86 E-value=1.1e-08 Score=69.40 Aligned_cols=69 Identities=26% Similarity=0.485 Sum_probs=55.3
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC------ceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG------ERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|.=.+.| |++++++|+..+ .++.|+|++.+........ .|.|.+... +|.++++|++++||+|+|++|
T Consensus 11 ~~~v~~dl-PG~~~edi~V~v-~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~---vd~~~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 11 RWKVSLDV-NHFAPEELVVKT-KDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPG---VDPTAVTSSLSPDGILTVEAP 85 (86)
T ss_pred eEEEEEEC-CCCCHHHEEEEE-ECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCC---CCHHHcEEEECCCCeEEEEec
Confidence 57788889 599999999999 8999999998865332111 344555444 999999999987999999998
No 41
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.85 E-value=1.1e-08 Score=69.69 Aligned_cols=69 Identities=26% Similarity=0.467 Sum_probs=53.1
Q ss_pred EEEEEEECCCCCCcCCcEEEecCC-CEEEEEeeccccccCCC-------------ceEEEeecCCCCCCccccccccCCC
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSD-GVLSIQAPKKAVEAGAG-------------ERAIPVVQTPDSVDANAISSKLSSD 118 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~d-GvL~I~~pk~~~~~~~~-------------~r~I~I~~~~~~vd~~~v~~~~~~~ 118 (150)
.|.=.+.|| ++.+++|+..+ .+ ++|+|++.+..+..... .|.|++... +|.++++|+|. |
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v-~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~---v~~~~i~A~~~-n 83 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEV-EDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPEN---ADADEVKAFLE-N 83 (92)
T ss_pred eEEEEEECC-CCChHhEEEEE-eCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCC---CCHHHCEEEEE-C
Confidence 577788895 68999999999 55 59999998765432222 334444433 99999999998 9
Q ss_pred CeEEEEeec
Q psy6564 119 GVLSIQAPK 127 (150)
Q Consensus 119 GvL~i~~pk 127 (150)
|+|+|++||
T Consensus 84 GvL~I~lPK 92 (92)
T cd06472 84 GVLTVTVPK 92 (92)
T ss_pred CEEEEEecC
Confidence 999999998
No 42
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=98.82 E-value=1.2e-08 Score=69.59 Aligned_cols=68 Identities=28% Similarity=0.467 Sum_probs=54.0
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC---------------ceEEEeecCCCCCCccccccccCC
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG---------------ERAIPVVQTPDSVDANAISSKLSS 117 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~---------------~r~I~I~~~~~~vd~~~v~~~~~~ 117 (150)
.|.=.+.|| +++.++|+..+ .++.|+|++.+....+... .|.|.+. .+|.+.++|++.
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~-~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp----~v~~~~i~A~~~- 83 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDY-KDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP----NVDEEEIKAKYE- 83 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC----CCCHHHCEEEEE-
Confidence 577789997 89999999999 8999999999875432111 2334432 489999999997
Q ss_pred CCeEEEEeec
Q psy6564 118 DGVLSIQAPK 127 (150)
Q Consensus 118 ~GvL~i~~pk 127 (150)
||+|+|++||
T Consensus 84 dGvL~I~lPK 93 (93)
T cd06471 84 NGVLKITLPK 93 (93)
T ss_pred CCEEEEEEcC
Confidence 9999999998
No 43
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=98.79 E-value=2.2e-08 Score=68.74 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=56.6
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCC------ceEEEeecCCCCCCccccccccCCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAG------ERAIPVVQTPDSVDANAISSKLSSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~------~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~p 126 (150)
.|+-.+.+ .++.+++|+.++ .++.|+|++.+.....+.. .|.+.+... ||.+.+.|+|++||+|+|+||
T Consensus 16 ~f~v~ldv-~gF~pEDL~Vkv-~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~---Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 16 PWKVCVNV-HSFKPEELTVKT-KDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPE---VDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred cEEEEEEe-CCCCHHHcEEEE-ECCEEEEEEEECcccCCCCEEEEEEEEEEECCCC---CCchhEEEEeCCCCeEEEEcC
Confidence 57778888 789999999999 8999999999886542211 344444444 999999999999999999999
Q ss_pred c
Q psy6564 127 K 127 (150)
Q Consensus 127 k 127 (150)
+
T Consensus 91 ~ 91 (91)
T cd06480 91 Q 91 (91)
T ss_pred C
Confidence 5
No 44
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.50 E-value=9.1e-07 Score=58.62 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=64.8
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
+++++.+.|.+.+||+.++++.|.+.++.|.|++... ++ ..|...+.|+..|++++.++.+ .+|.|.|.+.
T Consensus 3 ~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~----~~----~~~~~~~~L~~~I~~~~s~~~~-~~~~vei~L~ 73 (84)
T cd06466 3 YQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP----GG----SEYQLELDLFGPIDPEQSKVSV-LPTKVEITLK 73 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC----CC----CeEEEecccccccCchhcEEEE-eCeEEEEEEE
Confidence 4678899999999999999999999999999987643 11 2577788999999999999999 7999999999
Q ss_pred cccc
Q psy6564 85 KKAV 88 (150)
Q Consensus 85 k~~~ 88 (150)
|..+
T Consensus 74 K~~~ 77 (84)
T cd06466 74 KAEP 77 (84)
T ss_pred cCCC
Confidence 9753
No 45
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=98.48 E-value=6.4e-07 Score=60.97 Aligned_cols=69 Identities=12% Similarity=0.241 Sum_probs=51.0
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCC----------CCCccccccccCCCCeEE
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPD----------SVDANAISSKLSSDGVLS 122 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~----------~vd~~~v~~~~~~~GvL~ 122 (150)
.|.=.+.|| ++..++|+..+ .++.|+|++.+..... ++.+.+..++..+ .+|. .+|++. ||+|+
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~-~~~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~--~~A~~~-~GvL~ 85 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEV-ENNQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKV--KGAELE-NGLLT 85 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceE--CeeEEe-CCEEE
Confidence 577789996 79999999999 8999999999877653 2323333222222 2555 478998 99999
Q ss_pred EEeec
Q psy6564 123 IQAPK 127 (150)
Q Consensus 123 i~~pk 127 (150)
|++|+
T Consensus 86 I~l~~ 90 (90)
T cd06470 86 IDLER 90 (90)
T ss_pred EEEEC
Confidence 99986
No 46
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.41 E-value=8.1e-07 Score=58.78 Aligned_cols=69 Identities=28% Similarity=0.500 Sum_probs=56.3
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccC------------CCceEEEeecCCCCCCccccccccCCCCe
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAG------------AGERAIPVVQTPDSVDANAISSKLSSDGV 120 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~------------~~~r~I~I~~~~~~vd~~~v~~~~~~~Gv 120 (150)
.|.=.+.||. +++++|+.++ .++.|.|++.+...... .-.|.+++... +|.+.+.|.+. ||+
T Consensus 8 ~~~i~~~lpg-~~~~~i~V~v-~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~---vd~~~i~a~~~-~G~ 81 (88)
T cd06464 8 AYVVEADLPG-FKKEDIKVEV-EDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPED---VDPDKIKASLE-NGV 81 (88)
T ss_pred EEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCC---cCHHHcEEEEe-CCE
Confidence 5778899965 9999999999 79999999999865421 12455666544 99999999999 799
Q ss_pred EEEEeec
Q psy6564 121 LSIQAPK 127 (150)
Q Consensus 121 L~i~~pk 127 (150)
|+|++||
T Consensus 82 L~I~~pk 88 (88)
T cd06464 82 LTITLPK 88 (88)
T ss_pred EEEEEcC
Confidence 9999997
No 47
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.92 E-value=0.00032 Score=45.16 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=59.9
Q ss_pred eEEEcCCeEEEEEEeCCC--CCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEE
Q psy6564 3 ATTAAEIEGTVNLDVQQF--KPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLS 80 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~--~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~ 80 (150)
+=..+++.+.|.+.+++. +++|+.|.+.++.|.|+...... ..|.-.+.|...|++++.+..+ .++.|.
T Consensus 4 ~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~--------~~~~~~~~L~~~I~~~~s~~~~-~~~~i~ 74 (79)
T PF04969_consen 4 DWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG--------KEYLLEGELFGEIDPDESTWKV-KDNKIE 74 (79)
T ss_dssp EEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS--------CEEEEEEEBSS-BECCCEEEEE-ETTEEE
T ss_pred EEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC--------ceEEEEEEEeeeEcchhcEEEE-ECCEEE
Confidence 346788999999999665 59999999999999998654321 2577788899999999999999 788999
Q ss_pred EEeec
Q psy6564 81 IQAPK 85 (150)
Q Consensus 81 I~~pk 85 (150)
|++.|
T Consensus 75 i~L~K 79 (79)
T PF04969_consen 75 ITLKK 79 (79)
T ss_dssp EEEEB
T ss_pred EEEEC
Confidence 99876
No 48
>KOG0710|consensus
Probab=97.87 E-value=4.7e-05 Score=59.03 Aligned_cols=87 Identities=23% Similarity=0.362 Sum_probs=62.8
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCC-EEEEEeeccccccC--CCceEEEeecCC----------CCCCccccccccCCCC
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDG-VLSIQAPKKAVEAG--AGERAIPVVQTP----------DSVDANAISSKLSSDG 119 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dG-vL~I~~pk~~~~~~--~~~r~I~I~~~~----------~~vd~~~v~~~~~~~G 119 (150)
.|...+.+|.-. .++++..+ .++ +|+|++.+..+.+. ........++.. .+++.+.++|.+. ||
T Consensus 95 ~~~~~~~~Pgl~-ke~iKv~~-~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~-nG 171 (196)
T KOG0710|consen 95 AHEFKVDLPGLK-KEDIKVEV-EDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEME-NG 171 (196)
T ss_pred ceEEEeeCCCCC-chhceEEe-ccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHhh-CC
Confidence 567779997666 99999999 666 89999999876642 222233333222 2389999999998 99
Q ss_pred eEEEEeeccccc-CCCCceEEeee
Q psy6564 120 VLSIQAPKKAVE-GGAGERAIPVV 142 (150)
Q Consensus 120 vL~i~~pk~~~~-~~~~~r~I~i~ 142 (150)
||+|++||.... .....+.|.|+
T Consensus 172 VL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 172 VLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred eEEEEEecccccccCCccceeecc
Confidence 999999998742 23445777775
No 49
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.82 E-value=0.00013 Score=59.75 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=58.2
Q ss_pred CCeEEEEEEeCCC-CCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEec-CCCEEEEEeec
Q psy6564 8 EIEGTVNLDVQQF-KPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLS-SDGVLSIQAPK 85 (150)
Q Consensus 8 ~~~~~v~~dlpG~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~-~dGvL~I~~pk 85 (150)
.+.+.|.+.|||+ +..+|.|.|.+..|.|..... .|+=.+.||..||.+..+|.|. ..++|+|++|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~-----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlpV 328 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP-----------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLPV 328 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC-----------ceEEEccCCCcccCCCceEEEccCCCEEEEEEEC
Confidence 5789999999999 889999999999999975542 3567799999999999999993 56999999983
No 50
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.64 E-value=0.00054 Score=45.58 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=61.4
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
+.+++.+.|++.++|+.++++.|.+.++.|.++++... + ..|.-.+.|...|++++.+..+ ..+-+.|.+.
T Consensus 3 ~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~---~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~ 73 (84)
T cd06489 3 YQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS---G-----NDYSLKLHLLHPIVPEQSSYKI-LSTKIEIKLK 73 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC---C-----CcEEEeeecCceecchhcEEEE-eCcEEEEEEE
Confidence 35678899999999999999999999999999886521 1 1356677899999999988888 6888999999
Q ss_pred ccc
Q psy6564 85 KKA 87 (150)
Q Consensus 85 k~~ 87 (150)
|..
T Consensus 74 K~~ 76 (84)
T cd06489 74 KTE 76 (84)
T ss_pred cCC
Confidence 874
No 51
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.45 E-value=0.0028 Score=44.18 Aligned_cols=74 Identities=9% Similarity=0.114 Sum_probs=62.3
Q ss_pred EEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEe
Q psy6564 4 TTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQA 83 (150)
Q Consensus 4 i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~ 83 (150)
=+.+.+.+.|.+.+||. +++.|.+..+.|.|++.... ++ +.|.-.+.|...|++++-+.++ .++.|.|++
T Consensus 5 W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~--~~-----~~y~~~~~L~~~I~pe~s~~~v-~~~kveI~L 74 (108)
T cd06465 5 WAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG--GG-----KKYEFDLEFYKEIDPEESKYKV-TGRQIEFVL 74 (108)
T ss_pred eeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC--CC-----eeEEEEeEhhhhccccccEEEe-cCCeEEEEE
Confidence 35778899999999998 99999999999999885421 11 3467778999999999999999 789999999
Q ss_pred eccc
Q psy6564 84 PKKA 87 (150)
Q Consensus 84 pk~~ 87 (150)
.|..
T Consensus 75 ~K~~ 78 (108)
T cd06465 75 RKKE 78 (108)
T ss_pred EECC
Confidence 9976
No 52
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=97.42 E-value=0.00057 Score=43.12 Aligned_cols=69 Identities=30% Similarity=0.497 Sum_probs=52.5
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeecccccc-----CCCceEEEeecCCCCCCccccccccCCCCeEEEEeec
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEA-----GAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPK 127 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~-----~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk 127 (150)
.|.=++.||. +..+++.+.+ .++.|+|++....... ..-.+.+.+. ..++++++.+.+. +|.|+|.+||
T Consensus 7 ~v~i~i~~~~-~~~~~i~v~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~---~~i~~~~~~~~~~-~~~l~i~l~K 80 (80)
T cd00298 7 EVVVTVDLPG-VKKEDIKVEV-EDNVLTISGKREEEEERERSYGEFERSFELP---EDVDPEKSKASLE-NGVLEITLPK 80 (80)
T ss_pred EEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEcCCCcceEeeeeEEEEEECC---CCcCHHHCEEEEE-CCEEEEEEcC
Confidence 5677889976 5699999999 7899999998764310 0123344443 4499999999999 7999999997
No 53
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.36 E-value=0.0018 Score=42.82 Aligned_cols=72 Identities=21% Similarity=0.189 Sum_probs=58.0
Q ss_pred EEcCCeEEEEEEeC-CCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCC-CEEEEE
Q psy6564 5 TAAEIEGTVNLDVQ-QFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSD-GVLSIQ 82 (150)
Q Consensus 5 ~e~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~d-GvL~I~ 82 (150)
.++++.+.|.+.+| ++.++|+.+.+.++.|.|+... + .+ -+. -.|...|++++..-.+ .+ ..|.|+
T Consensus 4 ~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~-----~-~~---~l~--~~L~~~I~~~~s~w~~-~~~~~v~i~ 71 (85)
T cd06467 4 TQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG-----G-EP---LLD--GELYAKVKVDESTWTL-EDGKLLEIT 71 (85)
T ss_pred EeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC-----C-Cc---eEc--CcccCceeEcCCEEEE-eCCCEEEEE
Confidence 56788999999997 7999999999999999998642 1 11 122 3588899999988888 67 999999
Q ss_pred eecccc
Q psy6564 83 APKKAV 88 (150)
Q Consensus 83 ~pk~~~ 88 (150)
++|..+
T Consensus 72 L~K~~~ 77 (85)
T cd06467 72 LEKRNE 77 (85)
T ss_pred EEECCC
Confidence 999864
No 54
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.24 E-value=0.0067 Score=40.75 Aligned_cols=76 Identities=12% Similarity=0.192 Sum_probs=60.6
Q ss_pred EEEcCCeEEEEEEeCCCCC---CCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEE-ECCCCCCcCCcEEEecCCCEE
Q psy6564 4 TTAAEIEGTVNLDVQQFKP---EEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRY-KIPDSVDANAISSKLSSDGVL 79 (150)
Q Consensus 4 i~e~~~~~~v~~dlpG~~~---edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~-~LP~~vd~~~i~a~~~~dGvL 79 (150)
=.++++.+.|.+.+|+..+ +++.|.+..+.|.|++... ++ ..|.-.+ .|-..|++++-+..+ .++.+
T Consensus 6 W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~~~~~~~~L~~~I~~e~s~~~~-~~~ki 76 (92)
T cd06468 6 WDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDL---NG-----KNYRFTINRLLKKIDPEKSSFKV-KTDRI 76 (92)
T ss_pred eecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECC---CC-----cEEEEEehHhhCccCccccEEEE-eCCEE
Confidence 3578899999999999877 9999999999999987431 11 1344445 488999999999998 68889
Q ss_pred EEEeecccc
Q psy6564 80 SIQAPKKAV 88 (150)
Q Consensus 80 ~I~~pk~~~ 88 (150)
.|.+.|..+
T Consensus 77 ~i~L~K~~~ 85 (92)
T cd06468 77 VITLAKKKE 85 (92)
T ss_pred EEEEEeCCC
Confidence 999998863
No 55
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=97.21 E-value=0.0021 Score=41.76 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=50.0
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeeccc
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKA 129 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~ 129 (150)
.+.=++.+| ++..+++...+ .+..|.|.+. .-.+.+.+. ..+|++++.+++. +|.|.|++||..
T Consensus 7 ~v~i~i~~p-~v~~~~v~v~~-~~~~l~i~~~-------~~~~~~~l~---~~I~~e~~~~~~~-~~~l~i~L~K~~ 70 (78)
T cd06469 7 DVKISVPLK-GVKTSKVDIFC-SDLYLKVNFP-------PYLFELDLA---APIDDEKSSAKIG-NGVLVFTLVKKE 70 (78)
T ss_pred EEEEEEEeC-CCccccceEEE-ecCEEEEcCC-------CEEEEEeCc---ccccccccEEEEe-CCEEEEEEEeCC
Confidence 456678898 69999999999 7889999871 123344443 3499999999998 899999999975
No 56
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.11 E-value=0.0084 Score=40.01 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=56.3
Q ss_pred EEcCCeEEEEEEeC-CCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCC-EEEEE
Q psy6564 5 TAAEIEGTVNLDVQ-QFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDG-VLSIQ 82 (150)
Q Consensus 5 ~e~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dG-vL~I~ 82 (150)
..+.+.+.|.+.+| |..++|++|++..+.|.|..+.. . .| -.-.|...|++++-+-++ .+| .|.|.
T Consensus 4 ~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~-----~-----~~-~~g~L~~~I~~d~Stw~i-~~~~~l~i~ 71 (85)
T cd06493 4 QQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQ-----A-----PL-LEGKLYSSIDHESSTWII-KENKSLEVS 71 (85)
T ss_pred EEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCC-----C-----eE-EeCcccCcccccCcEEEE-eCCCEEEEE
Confidence 56788999999995 99999999999999999965211 0 11 233788999999977777 566 69999
Q ss_pred eecccc
Q psy6564 83 APKKAV 88 (150)
Q Consensus 83 ~pk~~~ 88 (150)
+.|..+
T Consensus 72 L~K~~~ 77 (85)
T cd06493 72 LIKKDE 77 (85)
T ss_pred EEECCC
Confidence 999753
No 57
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.07 E-value=0.012 Score=39.55 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=63.0
Q ss_pred EEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEe
Q psy6564 4 TTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQA 83 (150)
Q Consensus 4 i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~ 83 (150)
=+.+++.+.|.+.+.|..++++.+.++++.|.++..... + ..|.-.+.|-..|+++..+..+ ..+-+.|.+
T Consensus 5 W~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-----~---~~y~~~l~L~~~I~~~~s~~~v-~~~kvei~L 75 (87)
T cd06488 5 WHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-----N---KEFQLDIELWGVIDVEKSSVNM-LPTKVEIKL 75 (87)
T ss_pred EeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC-----C---ceEEEEeeccceEChhHcEEEe-cCcEEEEEE
Confidence 356789999999999999999999999999998765431 1 2467778999999999988888 788999999
Q ss_pred ecccc
Q psy6564 84 PKKAV 88 (150)
Q Consensus 84 pk~~~ 88 (150)
.|..+
T Consensus 76 ~K~~~ 80 (87)
T cd06488 76 RKAEP 80 (87)
T ss_pred EeCCC
Confidence 99753
No 58
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=96.36 E-value=0.041 Score=35.29 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=52.4
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeeccc
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKA 129 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~ 129 (150)
+..=++.+|... .+++.+.+ .+..|+|.+.... .....+.+. -..+++++++..++. +|.|.|+++|..
T Consensus 7 ~v~i~v~~~~~~-~~~~~v~~-~~~~l~i~~~~~~----~~~~~~~~~-L~~~I~~~~s~~~~~-~~~l~i~L~K~~ 75 (84)
T cd06463 7 EVTITIPLKDVT-KKDVKVEF-TPKSLTVSVKGGG----GKEYLLEGE-LFGPIDPEESKWTVE-DRKIEITLKKKE 75 (84)
T ss_pred EEEEEEEcCCCC-ccceEEEE-ecCEEEEEeeCCC----CCceEEeeE-ccCccchhhcEEEEe-CCEEEEEEEECC
Confidence 456678888655 89999999 6889999987541 123344443 445699999999998 899999999976
No 59
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.19 E-value=0.13 Score=36.05 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=56.8
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
....+.+.|++.+++ .+|++|+++.+.|+++|... ++ .+|+-.+.|=..|++++-+... ..-.+.|.+.
T Consensus 7 aQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~---~g-----~~y~~~l~l~~~I~pe~Sk~~v-~~r~ve~~L~ 75 (106)
T cd00237 7 YDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG---DN-----VKIYNEIELYDRVDPNDSKHKR-TDRSILCCLR 75 (106)
T ss_pred eECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC---CC-----cEEEEEEEeecccCcccCeEEe-CCceEEEEEE
Confidence 456788999999999 68999999999999998431 11 1355567888889999888887 5667788888
Q ss_pred cccc
Q psy6564 85 KKAV 88 (150)
Q Consensus 85 k~~~ 88 (150)
|..+
T Consensus 76 K~~~ 79 (106)
T cd00237 76 KGKE 79 (106)
T ss_pred eCCC
Confidence 8753
No 60
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.97 E-value=0.12 Score=35.31 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=55.4
Q ss_pred EEEcCCeEEEEEEeC-CCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCE-EEE
Q psy6564 4 TTAAEIEGTVNLDVQ-QFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGV-LSI 81 (150)
Q Consensus 4 i~e~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGv-L~I 81 (150)
=..+.+.+.|.+.+| |.+++|+.|.+..+.|.|..+-+. + +.. .|...|++++-.=++ .+|- |.|
T Consensus 10 W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~------~----l~G--~L~~~I~~destWtl-ed~k~l~I 76 (93)
T cd06494 10 WYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQE------V----LKG--KLFDSVVADECTWTL-EDRKLIRI 76 (93)
T ss_pred EEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEE------E----EcC--cccCccCcccCEEEE-ECCcEEEE
Confidence 356788999999996 899999999999999999752110 1 111 577889999987888 6665 899
Q ss_pred Eeecccc
Q psy6564 82 QAPKKAV 88 (150)
Q Consensus 82 ~~pk~~~ 88 (150)
.+.|...
T Consensus 77 ~L~K~~~ 83 (93)
T cd06494 77 VLTKSNR 83 (93)
T ss_pred EEEeCCC
Confidence 9999753
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.81 E-value=0.2 Score=41.94 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=60.1
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
+.+++.+.|.+.+.|+.++++.|.+..+.|.|+..... + ..|.-.+.|-..|+++..+..+ ...-+.|++.
T Consensus 162 yQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~---~-----~~y~~~~~L~~~I~p~~s~~~v-~~~Kiei~l~ 232 (356)
T PLN03088 162 YQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPG---E-----DAYHLQPRLFGKIIPDKCKYEV-LSTKIEIRLA 232 (356)
T ss_pred eecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCC---C-----cceeecccccccccccccEEEE-ecceEEEEEe
Confidence 56788999999999999999999999999999865421 1 1345557899999999988888 4668899998
Q ss_pred ccc
Q psy6564 85 KKA 87 (150)
Q Consensus 85 k~~ 87 (150)
|..
T Consensus 233 K~~ 235 (356)
T PLN03088 233 KAE 235 (356)
T ss_pred cCC
Confidence 865
No 62
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=93.51 E-value=0.8 Score=28.88 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=49.9
Q ss_pred EEEEEEEC-CCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeec
Q psy6564 53 EFTRRYKI-PDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPK 127 (150)
Q Consensus 53 ~f~r~~~L-P~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk 127 (150)
...=.|.+ |..+..+++.+.+ .+..|.+.++.... ....+.+. -.++++++.....+. ++.|.|++.|
T Consensus 11 ~V~v~i~~~~~~~~~~dv~v~~-~~~~l~v~~~~~~~----~~~~~~~~-L~~~I~~~~s~~~~~-~~~i~i~L~K 79 (79)
T PF04969_consen 11 EVTVTIPVKPVDISKEDVKVDF-TDTSLSVSIKSGDG----KEYLLEGE-LFGEIDPDESTWKVK-DNKIEITLKK 79 (79)
T ss_dssp EEEEEEE-TTTTSSGGGEEEEE-ETTEEEEEEEETTS----CEEEEEEE-BSS-BECCCEEEEEE-TTEEEEEEEB
T ss_pred EEEEEEEEcCCCCChHHeEEEE-EeeEEEEEEEccCC----ceEEEEEE-EeeeEcchhcEEEEE-CCEEEEEEEC
Confidence 45677888 5568899999999 78899999775432 23444444 456699999988888 7799999876
No 63
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=93.42 E-value=0.61 Score=30.22 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=50.3
Q ss_pred EEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeeccc
Q psy6564 54 FTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKA 129 (150)
Q Consensus 54 f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~ 129 (150)
..=+|.+| ++..+++.+.+ .+..|.|.+.... .....+.++ -..+++++.+...+. +|.|.|++.|..
T Consensus 9 v~i~v~~~-~~~~~~v~v~~-~~~~l~i~~~~~~----~~~~~~~~~-L~~~I~~~~s~~~~~-~~~vei~L~K~~ 76 (84)
T cd06466 9 VTVTIYAK-NVDKEDVKVEF-NEQSLSVSIILPG----GSEYQLELD-LFGPIDPEQSKVSVL-PTKVEITLKKAE 76 (84)
T ss_pred EEEEEEEC-CCCHHHCEEEE-ecCEEEEEEECCC----CCeEEEecc-cccccCchhcEEEEe-CeEEEEEEEcCC
Confidence 44455665 88899999999 6778899877531 123445553 456689998888887 899999999975
No 64
>PF14913 DPCD: DPCD protein family
Probab=93.37 E-value=0.5 Score=36.59 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=55.2
Q ss_pred eEEEcCCeEEEEE-EeCCCCCCCeEEEEEC--CEEEEEEEEeeecCCCceEEEEEEEEEECCCC------CCcCCcEEEe
Q psy6564 3 ATTAAEIEGTVNL-DVQQFKPEEIDVKVVD--KYIVVHAKHEERSDQHGFISREFTRRYKIPDS------VDANAISSKL 73 (150)
Q Consensus 3 ~i~e~~~~~~v~~-dlpG~~~edI~V~v~~--~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~------vd~~~i~a~~ 73 (150)
+=.++...|.+.+ +|| |..+-.+|++++ +.++|+-.. ..|+++|.+|+- .+.+.++..+
T Consensus 90 ~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtN-----------KKYyKk~~IPDl~R~~l~l~~~~ls~~h 157 (194)
T PF14913_consen 90 VRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTN-----------KKYYKKFSIPDLDRCGLPLEQSALSFAH 157 (194)
T ss_pred EEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcC-----------ccceeEecCCcHHhhCCCcchhhceeee
Confidence 3456777888888 788 788888888885 457775322 258999999952 4778888889
Q ss_pred cCCCEEEEEeeccc
Q psy6564 74 SSDGVLSIQAPKKA 87 (150)
Q Consensus 74 ~~dGvL~I~~pk~~ 87 (150)
.+..|.|+-.|..
T Consensus 158 -~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 158 -QNNTLIISYKKPK 170 (194)
T ss_pred -ecCeEEEEecCcH
Confidence 8999999988765
No 65
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=93.29 E-value=1.1 Score=30.09 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=51.5
Q ss_pred EcCCeEEEEEEeC-C--CCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCC-EEEE
Q psy6564 6 AAEIEGTVNLDVQ-Q--FKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDG-VLSI 81 (150)
Q Consensus 6 e~~~~~~v~~dlp-G--~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dG-vL~I 81 (150)
.+.+...|.+.+| + .+++|++|.+..+.|.|.-+.+. -++ .. .|...|+++.-.=++ ++| .|.|
T Consensus 5 QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~-----~~i----~G--~L~~~V~~des~Wtl-ed~~~l~i 72 (87)
T cd06492 5 QTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQP-----PII----DG--ELYNEVKVEESSWLI-EDGKVVTV 72 (87)
T ss_pred eecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCc-----eEE----eC--cccCcccccccEEEE-eCCCEEEE
Confidence 4567788999985 3 88999999999999999543211 011 22 567788888866677 776 8999
Q ss_pred Eeeccc
Q psy6564 82 QAPKKA 87 (150)
Q Consensus 82 ~~pk~~ 87 (150)
.+-|..
T Consensus 73 ~L~K~~ 78 (87)
T cd06492 73 NLEKIN 78 (87)
T ss_pred EEEECC
Confidence 999875
No 66
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=92.24 E-value=0.63 Score=30.32 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=49.0
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCC-CeEEEEeeccc
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSD-GVLSIQAPKKA 129 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~-GvL~i~~pk~~ 129 (150)
+..=+|.+|+++..+++++.+ .+.-|.|++.. +...+. ..-.+.+|++...-.+. + ..|.|+++|..
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~-~~~~l~v~~~~-------~~~~l~-~~L~~~I~~~~s~w~~~-~~~~v~i~L~K~~ 76 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEI-TPKHLKVGVKG-------GEPLLD-GELYAKVKVDESTWTLE-DGKLLEITLEKRN 76 (85)
T ss_pred EEEEEEECCCCCcceeEEEEE-EcCEEEEEECC-------CCceEc-CcccCceeEcCCEEEEe-CCCEEEEEEEECC
Confidence 456778899999999999999 67778888752 111222 13445688887766776 5 88999999975
No 67
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=91.10 E-value=0.63 Score=35.65 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=43.0
Q ss_pred EEEEEECCCCC-CcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeecccccC
Q psy6564 54 FTRRYKIPDSV-DANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKAVEG 132 (150)
Q Consensus 54 f~r~~~LP~~v-d~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~~~~ 132 (150)
+.-.-.|| +| +.+.|++.+ ....+.|++-+... .-+.|.+... +.+..++.+. ||||.|.+-+....+
T Consensus 104 ~~VvAdLP-GVs~dd~idV~l-~~d~~~L~i~~~~~----~~krv~L~~~----~~e~~~~t~n-NgILEIri~~~~~~~ 172 (177)
T PF05455_consen 104 LVVVADLP-GVSDDDAIDVTL-DDDEGALTIRVGEK----YLKRVALPWP----DPEITSATFN-NGILEIRIRRTEESS 172 (177)
T ss_pred EEEEEeCC-CCCcccceeeEe-ecCCceEEEecCCc----eEeeEecCCC----ccceeeEEEe-CceEEEEEeecCCCC
Confidence 55566675 56 444488888 65555555533321 2445666533 4566677887 999999999876333
No 68
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=90.80 E-value=3.5 Score=27.49 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=53.1
Q ss_pred EEcCCeEEEEEEeCC--CCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEec-CCCEEEE
Q psy6564 5 TAAEIEGTVNLDVQQ--FKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLS-SDGVLSI 81 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG--~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~-~dGvL~I 81 (150)
+.+++++.|.+...+ ....++.+....+.|.|+-... + ..|...|.|-..++++. +..++ .-|-+.|
T Consensus 4 yQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~----~-----~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI 73 (87)
T cd06490 4 FQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG----D-----KSYLLHLDLSNEVQWPC-EVRISTETGKIEL 73 (87)
T ss_pred eECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC----C-----ceEEEeeeccccCCCCc-EEEEcccCceEEE
Confidence 568899999999885 5556666766777898875432 1 13667778888888775 55552 3778999
Q ss_pred Eeecccc
Q psy6564 82 QAPKKAV 88 (150)
Q Consensus 82 ~~pk~~~ 88 (150)
.+.|.++
T Consensus 74 ~L~K~e~ 80 (87)
T cd06490 74 VLKKKEP 80 (87)
T ss_pred EEEcCCC
Confidence 9998753
No 69
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=89.08 E-value=2.5 Score=28.80 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=48.7
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeeccc
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKA 129 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~ 129 (150)
+..-+|+||+++..+++.+.+ ...-|+|.+. +...+. ..-.+.++++...=.+..+.+|.|.+.|..
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i-~~~~l~V~~~--------g~~~l~-G~L~~~I~~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKL-GSRDISLAVK--------GQEVLK-GKLFDSVVADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred EEEEEEECCCCCceeeEEEEE-EcCEEEEEEC--------CEEEEc-CcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence 567788999999999999999 7888899872 111222 123445777776667774556899999975
No 70
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=88.99 E-value=5.9 Score=27.47 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=52.6
Q ss_pred EEcCCeEEEEEEeC-C-CCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCE-EEE
Q psy6564 5 TAAEIEGTVNLDVQ-Q-FKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGV-LSI 81 (150)
Q Consensus 5 ~e~~~~~~v~~dlp-G-~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGv-L~I 81 (150)
..+-+.+.|.+.+| | .+.+||.|.+..+.|.|.-+.... +.-++. . .|+..|++++-.=++ +||- |.|
T Consensus 10 tQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~--~~~~i~----G--~L~~~V~~des~Wtl-ed~~~l~I 80 (102)
T cd06495 10 SQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGG--EKVLME----G--EFTHKINTENSLWSL-EPGKCVLL 80 (102)
T ss_pred EeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCC--CceEEe----C--cccCcccCccceEEE-eCCCEEEE
Confidence 45678899999998 5 468999999999999987642100 001221 1 567788888866667 7755 899
Q ss_pred Eeeccc
Q psy6564 82 QAPKKA 87 (150)
Q Consensus 82 ~~pk~~ 87 (150)
++-|..
T Consensus 81 ~L~K~~ 86 (102)
T cd06495 81 SLSKCS 86 (102)
T ss_pred EEEECC
Confidence 999874
No 71
>KOG1309|consensus
Probab=88.72 E-value=1.9 Score=33.26 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=55.9
Q ss_pred eEEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEE
Q psy6564 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQ 82 (150)
Q Consensus 3 ~i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~ 82 (150)
+-+.++....|.+-.+++..+|+.|.+..+.|.+..+.... + .|.-...|-..|.++..+... ----+.|+
T Consensus 7 DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g-~-------~~~l~~~L~~~I~pe~~s~k~-~stKVEI~ 77 (196)
T KOG1309|consen 7 DWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSG-S-------EYNLQLKLYHEIIPEKSSFKV-FSTKVEIT 77 (196)
T ss_pred eeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCc-h-------hhhhhHHhcccccccceeeEe-eeeeEEEE
Confidence 45678889999999999999999999999999998765421 1 233333466778888766665 45567888
Q ss_pred eecc
Q psy6564 83 APKK 86 (150)
Q Consensus 83 ~pk~ 86 (150)
++|.
T Consensus 78 L~K~ 81 (196)
T KOG1309|consen 78 LAKA 81 (196)
T ss_pred eccc
Confidence 8883
No 72
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=88.02 E-value=2.4 Score=34.54 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=48.0
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCcccccccc-CCCCeEEEEee
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKL-SSDGVLSIQAP 126 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~-~~~GvL~i~~p 126 (150)
.+.-+|.||.-...+++...+ ....|.|..+... -.-.+++... ||.+...|.| +..+.|+|++|
T Consensus 262 ~lvv~i~LP~~~s~~~i~LdV-~~~~l~l~~~~~~-----y~L~l~LP~~---V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 262 ELVVEIELPGVESASDIDLDV-SEDRLSLSSPKPK-----YRLDLPLPYP---VDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred eEEEEEECCCcCccceeEEEE-eCCEEEEEeCCCc-----eEEEccCCCc---ccCCCceEEEccCCCEEEEEEE
Confidence 455678888655888888888 6888888877641 1223455444 9999999987 56899999998
No 73
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=86.25 E-value=5.6 Score=26.11 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=46.2
Q ss_pred EEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCC-eEEEEeeccc
Q psy6564 53 EFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDG-VLSIQAPKKA 129 (150)
Q Consensus 53 ~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~G-vL~i~~pk~~ 129 (150)
...=+|.+|+++..+++++.+ ...-|.+.+. . +...+ ...-.+.++++...=.+. +| .|.|.+.|..
T Consensus 9 ~V~v~i~~p~~~~~~dv~v~~-~~~~l~v~~~-~------~~~~~-~g~L~~~I~~d~Stw~i~-~~~~l~i~L~K~~ 76 (85)
T cd06493 9 DLTLTIRLPEDTTKEDIRIKF-LPDHISIALK-D------QAPLL-EGKLYSSIDHESSTWIIK-ENKSLEVSLIKKD 76 (85)
T ss_pred EEEEEEECCCCCChhhEEEEE-ecCEEEEEeC-C------CCeEE-eCcccCcccccCcEEEEe-CCCEEEEEEEECC
Confidence 456678999999999999999 6777778762 1 11222 113345577777665555 44 6999999975
No 74
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=82.85 E-value=8.9 Score=25.25 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=49.6
Q ss_pred EEEEEECCCCCC--cCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeeccc
Q psy6564 54 FTRRYKIPDSVD--ANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKA 129 (150)
Q Consensus 54 f~r~~~LP~~vd--~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~ 129 (150)
..=+|.+|.... .+++.+.| ...-|.+.+.-.. .....+.+..-.++++++.....+. ++-+.|++.|..
T Consensus 13 V~i~i~~~~~~~~~~~~v~v~~-~~~~l~v~~~~~~----~~~~~~~~~~L~~~I~~e~s~~~~~-~~ki~i~L~K~~ 84 (92)
T cd06468 13 VKIYITLKGVHQLPKENIQVEF-TERSFELKVHDLN----GKNYRFTINRLLKKIDPEKSSFKVK-TDRIVITLAKKK 84 (92)
T ss_pred EEEEEEccCCCcCCcccEEEEe-cCCEEEEEEECCC----CcEEEEEehHhhCccCccccEEEEe-CCEEEEEEEeCC
Confidence 455667765433 48899999 6788888874311 1233556655677899998888887 677999999976
No 75
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=80.03 E-value=20 Score=25.84 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=31.5
Q ss_pred CeEEEEECCEEEEEEEEeeecCCCceEE----EEEEEEEECCCCCCcCCcEEEecCCCEEEEE
Q psy6564 24 EIDVKVVDKYIVVHAKHEERSDQHGFIS----REFTRRYKIPDSVDANAISSKLSSDGVLSIQ 82 (150)
Q Consensus 24 dI~V~v~~~~L~I~g~~~~~~~~~~~~~----r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~ 82 (150)
.+.++.+++.|.|+.+.....-..++.. ..-.=.+.||.+...++++... .+|-+++.
T Consensus 86 ~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~-~~G~i~i~ 147 (166)
T PF13349_consen 86 KPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKT-SSGDITIE 147 (166)
T ss_pred EEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEe-ccccEEEE
Confidence 5777777888888766221100111111 1234456666666666666666 56666654
No 76
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=67.30 E-value=35 Score=23.21 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=46.9
Q ss_pred EEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeeccc
Q psy6564 54 FTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKA 129 (150)
Q Consensus 54 f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~ 129 (150)
..=+|.+|.. +++.+.+ ...-|.|.+.-.. . .....+.+ .-.++++++.....+. ++.|.|++.|..
T Consensus 12 V~i~i~~~~~---~~~~V~~-~~~~l~v~~~~~~-~--~~~y~~~~-~L~~~I~pe~s~~~v~-~~kveI~L~K~~ 78 (108)
T cd06465 12 VYLTIELPDA---KDPKIKL-EPTSLSFKAKGGG-G--GKKYEFDL-EFYKEIDPEESKYKVT-GRQIEFVLRKKE 78 (108)
T ss_pred EEEEEEeCCC---CCcEEEE-ECCEEEEEEEcCC-C--CeeEEEEe-EhhhhccccccEEEec-CCeEEEEEEECC
Confidence 4556677654 7888999 6778888884321 1 12234444 4456799999888887 689999999975
No 77
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=65.64 E-value=15 Score=22.40 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=19.7
Q ss_pred CCCCCCCeEEEEECCEEEEEEEEe
Q psy6564 18 QQFKPEEIDVKVVDKYIVVHAKHE 41 (150)
Q Consensus 18 pG~~~edI~V~v~~~~L~I~g~~~ 41 (150)
++|...+|.|.+.++.+.++|.-.
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~ 35 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVP 35 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEES
T ss_pred cccCCCeEEEEEECCEEEEEeeCc
Confidence 467778999999999999999864
No 78
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=63.98 E-value=27 Score=22.53 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=44.5
Q ss_pred CCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeeccc
Q psy6564 62 DSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKA 129 (150)
Q Consensus 62 ~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~ 129 (150)
.++..+++.+.+ .+..|++.+.... .....+.+ .-.++++++...-.+. ++-+-|.+.|..
T Consensus 16 k~~~~~~~~v~~-~~~~l~~~~~~~~----~~~y~~~~-~L~~~I~p~~s~~~v~-~~kiei~L~K~~ 76 (84)
T cd06489 16 KNVKPEDVSVEF-EKRELSATVKLPS----GNDYSLKL-HLLHPIVPEQSSYKIL-STKIEIKLKKTE 76 (84)
T ss_pred CCCCHHHCEEEE-eCCEEEEEEECCC----CCcEEEee-ecCceecchhcEEEEe-CcEEEEEEEcCC
Confidence 478889999999 7888999887531 12345555 3456678887777776 777999999964
No 79
>KOG2265|consensus
Probab=63.07 E-value=42 Score=25.75 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=48.0
Q ss_pred eEEEEEEe-CCC-CCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEeeccc
Q psy6564 10 EGTVNLDV-QQF-KPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKA 87 (150)
Q Consensus 10 ~~~v~~dl-pG~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~ 87 (150)
.+.|.+.+ ||+ +..+|.+.+....|.|.-+.+.-.-++ .|...|+.+.-.=++ ++|.+.+..-++.
T Consensus 29 EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG-----------~L~~~vk~des~Wti-Ed~k~i~i~l~K~ 96 (179)
T KOG2265|consen 29 EVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDG-----------ELSHSVKVDESTWTI-EDGKMIVILLKKS 96 (179)
T ss_pred heEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecC-----------ccccccccccceEEe-cCCEEEEEEeecc
Confidence 45667667 488 889999999999999876554311111 355677788877788 8998888777765
Q ss_pred c
Q psy6564 88 V 88 (150)
Q Consensus 88 ~ 88 (150)
.
T Consensus 97 ~ 97 (179)
T KOG2265|consen 97 N 97 (179)
T ss_pred c
Confidence 4
No 80
>KOG3158|consensus
Probab=59.77 E-value=52 Score=25.25 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=53.0
Q ss_pred cCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEeecc
Q psy6564 7 AEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAPKK 86 (150)
Q Consensus 7 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~ 86 (150)
..+.+++++.++ ...+..|.++...|+++|+... +. ..|+-.|.|=..||+++.+...+ +.+...++++
T Consensus 15 r~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~--d~-----~~~~~~ief~~eIdpe~sk~k~~--~r~if~i~~K 83 (180)
T KOG3158|consen 15 RRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGA--DN-----HKYENEIEFFDEIDPEKSKHKRT--SRSIFCILRK 83 (180)
T ss_pred hcCeEEEEEEec--cCccceeeccccEEEEEeccCC--Cc-----eeeEEeeehhhhcCHhhcccccc--ceEEEEEEEc
Confidence 456677888887 4568888999999999998752 11 24677788889999999888773 6666666666
Q ss_pred ccc
Q psy6564 87 AVE 89 (150)
Q Consensus 87 ~~~ 89 (150)
.+.
T Consensus 84 ~e~ 86 (180)
T KOG3158|consen 84 KEL 86 (180)
T ss_pred ccc
Confidence 543
No 81
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=55.98 E-value=51 Score=25.01 Aligned_cols=44 Identities=27% Similarity=0.502 Sum_probs=30.9
Q ss_pred CCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 22 PEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 22 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
|++|+|+++++.|+|+|..-. . ++.||. .+.... +++.|.+..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G~-------l------~~~~~~-----~v~i~~-~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKGT-------L------SRKIPD-----LITIEI-QDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCEE-------E------EEECCC-----CeEEEE-eCCEEEEEcC
Confidence 689999999999999987643 1 234444 345667 6777777754
No 82
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=55.58 E-value=58 Score=21.55 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=44.6
Q ss_pred EEEEEEECCCC--CCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCC-eEEEEeeccc
Q psy6564 53 EFTRRYKIPDS--VDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDG-VLSIQAPKKA 129 (150)
Q Consensus 53 ~f~r~~~LP~~--vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~G-vL~i~~pk~~ 129 (150)
+..-+|+||++ ++.+++++.+ ....|.|.+.-. ...|.- .-.+.++.+...=.+. +| .|.|.+-|..
T Consensus 9 ev~v~v~l~~~~~~~~kdv~v~i-~~~~l~v~~~g~-------~~~i~G-~L~~~V~~des~Wtle-d~~~l~i~L~K~~ 78 (87)
T cd06492 9 EVELKVPFKVSFRLKGKDVVVDI-QRKHLKVGLKGQ-------PPIIDG-ELYNEVKVEESSWLIE-DGKVVTVNLEKIN 78 (87)
T ss_pred EEEEEEECCCCCCccceEEEEEE-ecCEEEEEECCC-------ceEEeC-cccCcccccccEEEEe-CCCEEEEEEEECC
Confidence 45667889887 8999999999 677888866311 112222 1234577766555665 54 8999999864
No 83
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=52.31 E-value=31 Score=21.80 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=30.2
Q ss_pred CCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 22 PEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 22 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
|+.++|+++++.+.+.|..- ..++.||+.+. ++... +|+.+++...
T Consensus 2 P~gV~v~~~~~~i~v~G~~g-------------~l~~~~~~~v~---v~~~~-~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG-------------ELSRPIPPGVK---VEIKV-EDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETTEEEEESSSS-------------EEEEEETTTEE---EEEEE-ETTSEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE-------------eEEEECCCCee---EEEEc-CCCceEEEEC
Confidence 67889999999999987543 34566776543 22224 5676666554
No 84
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=51.17 E-value=72 Score=24.08 Aligned_cols=44 Identities=23% Similarity=0.513 Sum_probs=31.0
Q ss_pred CCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 22 PEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 22 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
|++|+|+++++.|+|+|..-. ..+.| |+ .+...+ +++.|.++..
T Consensus 11 P~~V~v~~~~~~v~v~Gp~G~-----------l~~~l--~~-----~i~i~~-~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPKGE-----------LSRTL--HP-----GVTVKV-EDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCCeE-----------EEEEc--CC-----CeEEEE-ECCEEEEEec
Confidence 789999999999999987642 23333 44 344566 6777777754
No 85
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=50.39 E-value=21 Score=23.87 Aligned_cols=58 Identities=10% Similarity=0.223 Sum_probs=38.1
Q ss_pred EEEEEECCCCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeecc
Q psy6564 54 FTRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKK 128 (150)
Q Consensus 54 f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~ 128 (150)
+...+.||+++-.+.-..++..+.-++|+.-+.... +|.+.+.-..+ .|.|+|+.-..
T Consensus 5 ~~~~l~lP~Dv~~~~p~itl~gr~~~~Ien~k~I~~----------------y~~~~I~l~t~-~G~l~I~G~~L 62 (85)
T TIGR02856 5 LAEKLDLPGDIILDLPRITLIGNEHIYIENHRGLVV----------------FSPEEVKLNST-NGKITIEGKNF 62 (85)
T ss_pred hhhhhCCChHHhcCCCEEEEECCcEEEEECccceEE----------------ECCCEEEEEcC-ceEEEEEcccE
Confidence 345677888887777777775566777765554433 45555555555 78888876543
No 86
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=50.20 E-value=70 Score=24.44 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 20 FKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 20 ~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
.=|++++|+++++.++|+|.+-. + .+.|. +. .++..+ ++|.|.++..
T Consensus 11 ~IP~~V~v~i~~~~v~VkGp~G~-------L----~~~~~--~~----~v~i~~-~~~~i~v~~~ 57 (180)
T PRK05518 11 EIPEGVTVEIEGLVVTVKGPKGE-------L----TRDFW--YP----GVTISV-EDGKVVIETE 57 (180)
T ss_pred EcCCCCEEEEECCEEEEECCCeE-------E----EEEec--CC----cEEEEE-ECCEEEEEEC
Confidence 34799999999999999987642 2 23222 21 355667 7888888755
No 87
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=49.83 E-value=66 Score=24.34 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=30.6
Q ss_pred CCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 22 PEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 22 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
|++|+|+++++.|+|+|..-. ..+.| |.. +...+ +++.|.+...
T Consensus 12 P~~V~v~~~~~~v~vkGp~G~-----------l~~~~--~~~-----v~i~~-~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPKGE-----------LSRTL--NPD-----VTVKV-EDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCEE-----------EEEEc--CCC-----eEEEE-ECCEEEEEcC
Confidence 689999999999999987642 23333 333 44566 6777777644
No 88
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=49.64 E-value=24 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=18.6
Q ss_pred EeCCCCC-CCeEEEEECCEEEEE
Q psy6564 16 DVQQFKP-EEIDVKVVDKYIVVH 37 (150)
Q Consensus 16 dlpG~~~-edI~V~v~~~~L~I~ 37 (150)
.-.||.. +.|+|.+..+.|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEECCEEEEe
Confidence 3468976 789999999999997
No 89
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=47.84 E-value=77 Score=20.70 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=42.3
Q ss_pred CCCCcCCcEEEecCCCEEEEEeeccccccCCCceEEEeecCCCCCCccccccccCCCCeEEEEeeccc
Q psy6564 62 DSVDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPVVQTPDSVDANAISSKLSSDGVLSIQAPKKA 129 (150)
Q Consensus 62 ~~vd~~~i~a~~~~dGvL~I~~pk~~~~~~~~~r~I~I~~~~~~vd~~~v~~~~~~~GvL~i~~pk~~ 129 (150)
.+++++.+.+.+ .+..|++.+.-.. .....+.++ -.++++++...-... .+-+-|.+.|..
T Consensus 19 k~~~~~~~~v~~-~~~~l~v~~~~~~----~~~y~~~l~-L~~~I~~~~s~~~v~-~~kvei~L~K~~ 79 (87)
T cd06488 19 KNSNPELSVVEA-NSTVLTIHIVFEG----NKEFQLDIE-LWGVIDVEKSSVNML-PTKVEIKLRKAE 79 (87)
T ss_pred CcCCccceEEEe-cCCEEEEEEECCC----CceEEEEee-ccceEChhHcEEEec-CcEEEEEEEeCC
Confidence 378889999999 6777887664332 123455553 455688887665665 788899999975
No 90
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=47.57 E-value=97 Score=23.40 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 22 PEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 22 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
|++++|+++++.++|+|.+-. + .+.|. |+ .+...+ ++|.|.++.+
T Consensus 7 P~~V~v~i~~~~i~vkGp~G~-------L----~~~~~-~~-----~v~i~~-~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKGE-------V----TRELW-YP-----GIEISV-EDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCCeE-------E----EEEEe-CC-----cEEEEE-eCCEEEEEeC
Confidence 689999999999999987642 2 22221 33 455677 7888888854
No 91
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=46.89 E-value=56 Score=25.15 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=30.9
Q ss_pred CCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 22 PEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 22 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
|++++|+++++.|+|+|.+-. .. +.||..- =.+.+.. ++|.|.|+-+
T Consensus 12 P~~V~V~i~~~~ItVkGpkG~-------Ls------~~~~~~~--~~i~i~~-~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRGT-------LT------KDLRHLQ--LDFRVNK-KNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCCEEEEECCCcE-------EE------EEcCCCC--cEEEEEe-cCCEEEEEeC
Confidence 799999999999999987642 22 2333210 1345566 6778888744
No 92
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=45.67 E-value=84 Score=24.21 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=33.9
Q ss_pred eCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 17 VQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 17 lpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
.|=.=|++++|+++++.++|+|..-. + .+.| |..- ..+.+.. ++|.|.|+-+
T Consensus 8 ~~I~IP~~V~V~i~~~~v~VkGp~G~-------L----~~~~--~~~~--~~i~i~~-~~~~i~v~~~ 59 (190)
T PTZ00027 8 EKIRIPEGVTVTVKSRKVTVTGKYGE-------L----TRSF--RHLP--VDIKLSK-DGKYIKVEMW 59 (190)
T ss_pred CCEecCCCCEEEEECCEEEEECCCce-------E----EEEe--cCCC--ceEEEEe-CCCEEEEEeC
Confidence 34334799999999999999987642 2 2222 2210 2466667 7888888755
No 93
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=44.13 E-value=76 Score=19.58 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=18.3
Q ss_pred CCeEEEEEEeCCCCCCCeEEEEE-CCEEEEEEE
Q psy6564 8 EIEGTVNLDVQQFKPEEIDVKVV-DKYIVVHAK 39 (150)
Q Consensus 8 ~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~ 39 (150)
...|.|.+..+||.+..-.|.+. +....|...
T Consensus 34 ~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 34 PGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred CccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 44566666666666666666665 344444443
No 94
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=40.34 E-value=21 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.6
Q ss_pred CCCCCCCeEEEEECCEEEEEEEEe
Q psy6564 18 QQFKPEEIDVKVVDKYIVVHAKHE 41 (150)
Q Consensus 18 pG~~~edI~V~v~~~~L~I~g~~~ 41 (150)
--|+++.|.+....+.|.|.|+.=
T Consensus 21 ~~f~~~~I~l~t~~g~l~I~G~~L 44 (66)
T PF07873_consen 21 LSFDDEEIRLNTKKGKLTIKGEGL 44 (66)
T ss_dssp EEEETTEEEEEETTEEEEEEEEEE
T ss_pred EEECCCEEEEEeCCEEEEEECceE
Confidence 347899999999999999999753
No 95
>KOG1667|consensus
Probab=39.67 E-value=2.1e+02 Score=23.51 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=61.0
Q ss_pred EEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEee
Q psy6564 5 TAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 5 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
..++..+.|.+...|.-++--.|...+-.|.|+-..... .++|.-.+.|=.-|+.+.-.+.+ ..--+.|+++
T Consensus 220 hqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~g-------na~fd~d~kLwgvvnve~s~v~m-~~tkVEIsl~ 291 (320)
T KOG1667|consen 220 HQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFG-------NASFDLDYKLWGVVNVEESSVVM-GETKVEISLK 291 (320)
T ss_pred hhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCC-------CceeeccceeeeeechhhceEEe-ecceEEEEEe
Confidence 345677888999999999999999999888887665321 24688888888888999999998 5777899999
Q ss_pred ccccc
Q psy6564 85 KKAVE 89 (150)
Q Consensus 85 k~~~~ 89 (150)
|.++-
T Consensus 292 k~ep~ 296 (320)
T KOG1667|consen 292 KAEPG 296 (320)
T ss_pred ccCCC
Confidence 88754
No 96
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=37.58 E-value=36 Score=23.66 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.4
Q ss_pred cCCcEEEecCCCEEEEEee
Q psy6564 66 ANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 66 ~~~i~a~~~~dGvL~I~~p 84 (150)
..++.+.+ .+|+|+|+++
T Consensus 27 ~~d~D~e~-~~gVLti~f~ 44 (105)
T cd00503 27 DADIDVET-QGGVLTLTFG 44 (105)
T ss_pred ccCEeeec-cCCEEEEEEC
Confidence 35788999 7999999998
No 97
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=35.23 E-value=1.5e+02 Score=20.30 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=25.8
Q ss_pred eeEEEcCCeEEEEEEeCCC-----CCCCeEEEEECCEEEEE
Q psy6564 2 LATTAAEIEGTVNLDVQQF-----KPEEIDVKVVDKYIVVH 37 (150)
Q Consensus 2 ~~i~e~~~~~~v~~dlpG~-----~~edI~V~v~~~~L~I~ 37 (150)
+.|+.+++.|.|.+--+.. +++...|+-+++.|.|.
T Consensus 28 v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~ 68 (95)
T PF12992_consen 28 VTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIE 68 (95)
T ss_pred EEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEe
Confidence 5678888888888755543 66777777667777664
No 98
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=34.11 E-value=39 Score=25.62 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=20.4
Q ss_pred EEEEECCCCCCcCCcEEEecCCCEEEEEeecccc
Q psy6564 55 TRRYKIPDSVDANAISSKLSSDGVLSIQAPKKAV 88 (150)
Q Consensus 55 ~r~~~LP~~vd~~~i~a~~~~dGvL~I~~pk~~~ 88 (150)
.+.+.+|++|. +++ .++.|++++|+-.-
T Consensus 6 ~~~I~IP~~V~-----v~~-~~~~v~vkGp~G~l 33 (178)
T PRK05498 6 KKPIAIPAGVE-----VTI-NGNVVTVKGPKGEL 33 (178)
T ss_pred ccceecCCCCE-----EEE-ECCEEEEECCCEEE
Confidence 45688888765 677 67888888887643
No 99
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=33.66 E-value=39 Score=23.39 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.4
Q ss_pred CcEEEecCCCEEEEEeec
Q psy6564 68 AISSKLSSDGVLSIQAPK 85 (150)
Q Consensus 68 ~i~a~~~~dGvL~I~~pk 85 (150)
++.+.+ .+|+|+|+++.
T Consensus 26 d~D~e~-~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCER-AGGVLTLTFEN 42 (102)
T ss_pred Ceeeec-CCCEEEEEECC
Confidence 478888 79999999973
No 100
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=33.29 E-value=41 Score=23.44 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.4
Q ss_pred CcEEEecCCCEEEEEeec
Q psy6564 68 AISSKLSSDGVLSIQAPK 85 (150)
Q Consensus 68 ~i~a~~~~dGvL~I~~pk 85 (150)
++.+.+ .+|||+|+++.
T Consensus 28 d~D~e~-~~gVLti~f~~ 44 (105)
T PRK00446 28 DIDCER-NGGVLTLTFEN 44 (105)
T ss_pred Ceeeec-cCCEEEEEECC
Confidence 477888 79999999874
No 101
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=32.03 E-value=72 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCCCCCCeEEEEECCEEEEEEEEee
Q psy6564 18 QQFKPEEIDVKVVDKYIVVHAKHEE 42 (150)
Q Consensus 18 pG~~~edI~V~v~~~~L~I~g~~~~ 42 (150)
.|+...++.|.++++.++++|.-..
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCC
Confidence 5778889999999999999998654
No 102
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=31.75 E-value=39 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.4
Q ss_pred EeCCCCCCCeEEEEECCEEEEEEEE
Q psy6564 16 DVQQFKPEEIDVKVVDKYIVVHAKH 40 (150)
Q Consensus 16 dlpG~~~edI~V~v~~~~L~I~g~~ 40 (150)
++--|+++.|.+....+.|.|+|+.
T Consensus 18 ~V~sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 18 EVISFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred eEEEECCCEEEEEeCcEEEEEEcce
Confidence 4455899999999999999999974
No 103
>KOG3413|consensus
Probab=30.34 E-value=27 Score=26.05 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=17.1
Q ss_pred CCCCcCCcEEEecCCCEEEEEee
Q psy6564 62 DSVDANAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 62 ~~vd~~~i~a~~~~dGvL~I~~p 84 (150)
+.+..+.-.+.| .||+|||.++
T Consensus 67 e~~~~~~~Dv~y-~~GVLTl~lg 88 (156)
T KOG3413|consen 67 EEVPGEGFDVDY-ADGVLTLKLG 88 (156)
T ss_pred hhcCcccccccc-ccceEEEEec
Confidence 344446667889 8999999998
No 104
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=28.91 E-value=53 Score=22.84 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=14.7
Q ss_pred CCcEEEecCCCEEEEEee
Q psy6564 67 NAISSKLSSDGVLSIQAP 84 (150)
Q Consensus 67 ~~i~a~~~~dGvL~I~~p 84 (150)
..+.+.+ .+|+|+|+++
T Consensus 30 ~d~d~e~-~~gVLti~~~ 46 (109)
T PF01491_consen 30 ADIDVER-SGGVLTIEFP 46 (109)
T ss_dssp STEEEEE-ETTEEEEEET
T ss_pred CceEEEc-cCCEEEEEEC
Confidence 4688999 7999999984
No 105
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=28.48 E-value=1.8e+02 Score=21.79 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=30.4
Q ss_pred CCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCC
Q psy6564 22 PEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANA 68 (150)
Q Consensus 22 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~ 68 (150)
.+-++|++..+.++|+|.--....--..+.-+....-++|++|..++
T Consensus 51 ~qGL~V~vy~drV~v~A~Df~~~~~IkklsI~~~~~~Q~~P~V~ADD 97 (158)
T PF13285_consen 51 KQGLQVEVYGDRVVVEARDFKRGKWIKKLSIHDGKIAQMAPDVTADD 97 (158)
T ss_pred ccceEEEEeCCeEEEEEEeccCCcchheeeeehhhhhhcCCcccccc
Confidence 37799999999999988643221111122235666778888876555
No 106
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=27.95 E-value=1.3e+02 Score=19.15 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=13.4
Q ss_pred CCeEEEEEEeCCCCCCCeEEEEEC
Q psy6564 8 EIEGTVNLDVQQFKPEEIDVKVVD 31 (150)
Q Consensus 8 ~~~~~v~~dlpG~~~edI~V~v~~ 31 (150)
.+.|.+.+...||....+.+....
T Consensus 43 ~g~~~l~is~~Gy~~~~~~i~~~~ 66 (88)
T PF13715_consen 43 EGDYTLKISYIGYETKTITISVNS 66 (88)
T ss_pred CCCeEEEEEEeCEEEEEEEEEecC
Confidence 334556666666666555555543
No 107
>PF14913 DPCD: DPCD protein family
Probab=27.46 E-value=84 Score=24.45 Aligned_cols=41 Identities=2% Similarity=0.151 Sum_probs=31.4
Q ss_pred eeEEEcCCeEEEEEEeCCC-------CCCCeEEEEECCEEEEEEEEee
Q psy6564 2 LATTAAEIEGTVNLDVQQF-------KPEEIDVKVVDKYIVVHAKHEE 42 (150)
Q Consensus 2 ~~i~e~~~~~~v~~dlpG~-------~~edI~V~v~~~~L~I~g~~~~ 42 (150)
+.|.-++.+|.=.+.+|.+ ..+.|++...+|+|+|+-+...
T Consensus 123 ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 123 IVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred EEEECcCccceeEecCCcHHhhCCCcchhhceeeeecCeEEEEecCcH
Confidence 4566777888888999875 3467788888999999987553
No 108
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=27.40 E-value=36 Score=28.26 Aligned_cols=76 Identities=7% Similarity=-0.055 Sum_probs=53.2
Q ss_pred EEEcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEEEeeecCCCceEEEEEEEEEECCCCCCcCCcEEEecCCCEEEEEe
Q psy6564 4 TTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSDGVLSIQA 83 (150)
Q Consensus 4 i~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~r~~~LP~~vd~~~i~a~~~~dGvL~I~~ 83 (150)
-.++.....|-+.-|-+..++|++.+++|+|.|+-+-+.. +..|.-.++|-..|+|+...... ---.+.|.+
T Consensus 181 ~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~-------~~~~~~~~~Ly~ev~P~~~s~k~-fsK~~e~~l 252 (368)
T COG5091 181 FSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRL-------RLWNDITISLYKEVYPDIRSIKS-FSKRVEVHL 252 (368)
T ss_pred ccccceeEEEEEecCCCCccccceeecCCcceeeeecccc-------chHHHhhhhhhhhcCcchhhhhh-cchhheehh
Confidence 3456666777777788999999999999999998765431 11345566777788888776665 335666666
Q ss_pred eccc
Q psy6564 84 PKKA 87 (150)
Q Consensus 84 pk~~ 87 (150)
.|..
T Consensus 253 ~KV~ 256 (368)
T COG5091 253 RKVE 256 (368)
T ss_pred hhhh
Confidence 6554
No 109
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=26.93 E-value=53 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=12.3
Q ss_pred EEEecCCCEEEEEee
Q psy6564 70 SSKLSSDGVLSIQAP 84 (150)
Q Consensus 70 ~a~~~~dGvL~I~~p 84 (150)
.+.+ .+|||+|+++
T Consensus 30 D~e~-~~gVLti~~~ 43 (97)
T TIGR03422 30 DVEY-SSGVLTLELP 43 (97)
T ss_pred cccc-CCCEEEEEEC
Confidence 6888 7999999985
No 110
>PRK02913 hypothetical protein; Provisional
Probab=23.66 E-value=77 Score=23.66 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=17.2
Q ss_pred CCcccccc-ccCCCCeEEEEeec
Q psy6564 106 VDANAISS-KLSSDGVLSIQAPK 127 (150)
Q Consensus 106 vd~~~v~~-~~~~~GvL~i~~pk 127 (150)
.+-+++++ .||.||+|.+.+-+
T Consensus 104 i~Y~~Ik~mNLSEDgiLVi~Le~ 126 (150)
T PRK02913 104 IEYSRIKAMNLSEDGILVIDLEQ 126 (150)
T ss_pred eehHHhhhcccccCCEEEEEecC
Confidence 34556666 88999999999876
No 111
>KOG3260|consensus
Probab=23.45 E-value=1.8e+02 Score=22.70 Aligned_cols=34 Identities=6% Similarity=0.104 Sum_probs=28.4
Q ss_pred EcCCeEEEEEEeCCCCCCCeEEEEECCEEEEEEE
Q psy6564 6 AAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAK 39 (150)
Q Consensus 6 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~ 39 (150)
.+++.+.+.+.|-|+..++++|.+..+.|.+.-+
T Consensus 81 Qs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~ 114 (224)
T KOG3260|consen 81 QSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVH 114 (224)
T ss_pred ccCCeeEEEEEeecccccceeEEecccceeeeee
Confidence 3556778899999999999999999998887643
No 112
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=22.57 E-value=2.8e+02 Score=21.85 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=24.2
Q ss_pred EEEECCEEEEEEEEeeec---CCCc-----------eEEEEEEEEEECCCC
Q psy6564 27 VKVVDKYIVVHAKHEERS---DQHG-----------FISREFTRRYKIPDS 63 (150)
Q Consensus 27 V~v~~~~L~I~g~~~~~~---~~~~-----------~~~r~f~r~~~LP~~ 63 (150)
+.++++.|.|+++++... .... +.+-.|+-+++||..
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 567799999999877531 1111 122268889999864
No 113
>PRK10568 periplasmic protein; Provisional
Probab=22.20 E-value=1.5e+02 Score=22.76 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCCCCCCeEEEEECCEEEEEEEEe
Q psy6564 18 QQFKPEEIDVKVVDKYIVVHAKHE 41 (150)
Q Consensus 18 pG~~~edI~V~v~~~~L~I~g~~~ 41 (150)
++++..+|+|.+.++.++++|.-.
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~ 96 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVE 96 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeC
Confidence 667788999999999999999865
No 114
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=21.96 E-value=2.7e+02 Score=21.11 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=25.1
Q ss_pred CCCCeEEEEECCEEEEEEEEeeecC----CC------ceEEEEEEEEEECCCC
Q psy6564 21 KPEEIDVKVVDKYIVVHAKHEERSD----QH------GFISREFTRRYKIPDS 63 (150)
Q Consensus 21 ~~edI~V~v~~~~L~I~g~~~~~~~----~~------~~~~r~f~r~~~LP~~ 63 (150)
.++++.| +++.|.|++.++.... .+ .+.+-.|+-++++|.+
T Consensus 30 ~~~nv~v--~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEF--SDGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEE--ECCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 4667655 4899999987653211 11 1223367888888864
No 115
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=21.25 E-value=2.2e+02 Score=19.04 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.8
Q ss_pred EEEcCCeEEEEEEe-CCCCCCCeEEEEEC--CEEEEEEEEee
Q psy6564 4 TTAAEIEGTVNLDV-QQFKPEEIDVKVVD--KYIVVHAKHEE 42 (150)
Q Consensus 4 i~e~~~~~~v~~dl-pG~~~edI~V~v~~--~~L~I~g~~~~ 42 (150)
+.++++.+.+.+.+ ||-+.+.| +.+++ +.|.|+-....
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i-~g~~~~~~~Lki~v~ApP 41 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSI-VGYNEWRKRVEVKIKAPP 41 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCccee-ccccCCCCeEEEEEecCC
Confidence 35778889999988 88888877 44566 77887655443
No 116
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=20.98 E-value=1.5e+02 Score=21.91 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCeEEEEEEeCCC---CCCCeEEEEECCEEEE
Q psy6564 8 EIEGTVNLDVQQF---KPEEIDVKVVDKYIVV 36 (150)
Q Consensus 8 ~~~~~v~~dlpG~---~~edI~V~v~~~~L~I 36 (150)
.+.|.+.+.+|.+ ..-.|.|.+.-|.+.+
T Consensus 48 ~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~~ 79 (142)
T PF14545_consen 48 ENPYTLQFKAPDFCLEPAGSVNVRVYCDGVSL 79 (142)
T ss_pred ECCEEEEEECchhcCCCCceEEEEEEECCEEE
Confidence 4689999999999 8899999999555544
No 117
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=20.52 E-value=1e+02 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.7
Q ss_pred CcEEEecCCCEEEEEeecc
Q psy6564 68 AISSKLSSDGVLSIQAPKK 86 (150)
Q Consensus 68 ~i~a~~~~dGvL~I~~pk~ 86 (150)
.+.+.+ .+|||+|+++..
T Consensus 29 d~D~d~-qg~VlTl~f~ng 46 (106)
T COG1965 29 DIDCEI-QGGVLTLTFDNG 46 (106)
T ss_pred Ccceec-CCCEEEEEECCC
Confidence 367888 899999998754
Done!