RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6564
(150 letters)
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 124 bits (312), Expect = 5e-37
Identities = 51/91 (56%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Query: 13 VNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSK 72
VNLDV+ F PEE+ VKV+ I VH KHEER D+HGFISREF R+Y+IP VD I+S
Sbjct: 77 VNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSS 136
Query: 73 LSSDGVLSIQAPKKAVEAGAGERAIPVVQTP 103
LSSDGVL++ P+K V ER IP+ +
Sbjct: 137 LSSDGVLTVNGPRKQVS--GPERTIPITREE 165
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 109 bits (275), Expect = 1e-32
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 13 VNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSK 72
V+LDV F P+E+ VK D + + KH R D+HG+ISR FTR+Y +P VD +SS
Sbjct: 11 VSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSS 70
Query: 73 LSSDGVLSIQAPKK 86
LS +G L+++AP
Sbjct: 71 LSPEGTLTVEAPMP 84
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 110 bits (276), Expect = 2e-32
Identities = 46/91 (50%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Query: 13 VNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSK 72
+ LDV+ F PE++ VKV + ++ +H KH ER D HG+ISREF RRY++P +VD +A+S
Sbjct: 16 IFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCS 75
Query: 73 LSSDGVLSIQAPKK--AVEAGAGERAIPVVQ 101
LS+DG+L+ PK V+AG ERAIPV +
Sbjct: 76 LSADGMLTFSGPKIPSGVDAGHSERAIPVSR 106
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 108 bits (272), Expect = 4e-32
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 13 VNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSK 72
VNLDV+ F PEE+ VKV+ I VH KHEER D+HGFISREF R+Y+IP VD I+S
Sbjct: 10 VNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSS 69
Query: 73 LSSDGVLSIQAPKKAVEA 90
+SSDGVL++ P+K V
Sbjct: 70 MSSDGVLTVNGPRKQVSG 87
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 107 bits (270), Expect = 1e-31
Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 12 TVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISS 71
+V LDV+ F PEEI VKVV ++ VHA+HEER D+HGFI+REF RRY++P VD A++S
Sbjct: 14 SVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTS 73
Query: 72 KLSSDGVLSIQAPKKAVEAGAGERAIPVVQ 101
LS +GVLSIQA + + A + P +
Sbjct: 74 ALSPEGVLSIQATPASAQ--ASLPSPPAAK 101
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 104 bits (261), Expect = 4e-28
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 13 VNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVDANAISSK 72
V +V+ FK EEI +K +VV A+ +S R +P SVD N I +
Sbjct: 116 VYFNVKNFKAEEITIKADKNKLVVRAQKSVACG-DAAMSESVGRSIPLPPSVDRNHIQAT 174
Query: 73 LSSDGVLSIQAPKKA 87
+++D VL I+AP
Sbjct: 175 ITTDDVLVIEAPVNE 189
Score = 92.2 bits (228), Expect = 2e-23
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 16 DVQQFKPEEIDVKVVDKYIVVHA---KHEERSDQHGFISREFTRRYKIPDSVDANAISSK 72
F P+++ V + VH K E+ + REF + + P+ VDA+ ++
Sbjct: 241 VDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAE 300
Query: 73 LSSDGVLSIQAPK 85
+ DG++ ++AP
Sbjct: 301 I-VDGLMVVEAPL 312
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 53.5 bits (129), Expect = 6e-10
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 20 FKPEEIDVKVVDKYIVV---HAKHEERSDQHGFISRE-----FTRRYKIPDSVDANAISS 71
K EE+ V+V D ++V E+ + E F RR+++ + + +
Sbjct: 64 VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA 123
Query: 72 KLSSDGVLSIQAPKKAVEAGAGERAIPV 99
L +GVL++ PK +AI +
Sbjct: 124 GL-ENGVLTVTVPKAE-VKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 51.3 bits (124), Expect = 1e-09
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 20 FKPEEIDVKVVDKYIVVHA--KHEERSDQHGFISRE-----FTRRYKIPDSVDANAISSK 72
P +I+V++ + + K E ++ F E F RR+ +PDS DA+ I++
Sbjct: 25 IDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAA 84
Query: 73 LSSDGVLSIQAPKKA 87
+GVL I+ PK+
Sbjct: 85 G-RNGVLEIRIPKRP 98
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 51.3 bits (123), Expect = 4e-09
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 20 FKPEEIDVKVVDKYIVVHA--KHEERSDQHGFISRE------FTRRYKIPDSVDANAISS 71
E+I + V + + A ++ I E R K+P +V S+
Sbjct: 77 VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASA 136
Query: 72 KLSSDGVLSIQAPKKAVEAGAGERAIPV 99
K +GVLS+ PK + I +
Sbjct: 137 KF-ENGVLSVILPKAESSIK---KGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 42.2 bits (100), Expect = 5e-06
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 20 FKPEEIDVKVV-DKYIVVHAKHEERSDQHGFISRE---FTRRYKIPDSVDANA-ISSKLS 74
F E+I +V +++ A+ E ++++ + ++P +V +A IS K
Sbjct: 45 FNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYE 104
Query: 75 SDGVLSIQAPKKAVE 89
+GVL+I+ P
Sbjct: 105 -NGVLTIRIPIAGTS 118
Score = 31.8 bits (73), Expect = 0.035
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 64 VDANAISSKLSSDGVLSIQAPKKAVEA---------GAGERAIPVVQTPDSVDANA-ISS 113
+ I +++S L I+A ++ E + I + P +V +A IS
Sbjct: 45 FNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRL---PYNVAKDAEISG 101
Query: 114 KLSSDGVLSIQAPKKAVE 131
K +GVL+I+ P
Sbjct: 102 KYE-NGVLTIRIPIAGTS 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 1e-04
Identities = 44/210 (20%), Positives = 66/210 (31%), Gaps = 70/210 (33%)
Query: 1 MLA---TTAAEIEGTVNLDVQQFKPEEIDVKVV----DKYIVV--HAKHEERSDQHGFIS 51
ML+ T +++ VN P V++ K +VV + +G
Sbjct: 338 MLSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQ-----SLYGLNL 391
Query: 52 REFTRRYKIPDSVDANAI--SS-KLS-SDGVLSIQAP------------------KKAVE 89
R+ K P +D + I S KL S+ L + +P K V
Sbjct: 392 T--LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 90 AGAGERAIPVVQTPDSVDANAISSKLSSDGVLSI-QAP---KKAVE---------G---- 132
A + IPV T D D +S +S V I + P + + G
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Query: 133 ------------GAGERAIPVVQTTIDQRP 150
G G R I T+D P
Sbjct: 510 SGLGVLTHRNKDGTGVRVIVA--GTLDINP 537
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.004
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 18 QQFKPEEIDVKVVDKYIVVH-AKHEERSDQHGFISREFTRRYKIPDSVDANAISSKLSSD 76
+ F +++ +D+Y H H + + ++ F + +D + K+ D
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFRMVF-----LDFRFLEQKIRHD 510
Query: 77 G 77
Sbjct: 511 S 511
Score = 31.4 bits (70), Expect = 0.13
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 27/100 (27%)
Query: 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEER--SDQHGFISREFTRRYKI 60
+TA G++ +Q +K YI + ER + F+ +
Sbjct: 510 DSTAWNASGSILNTLQ-------QLKFYKPYICDNDPKYERLVNAILDFLPK-------- 554
Query: 61 PDSVDANAISSKLSSDGV-LSIQAPKKAV--EAGAGERAI 97
++ N I SK +D + +++ A +A+ EA + +
Sbjct: 555 ---IEENLICSK-YTDLLRIALMAEDEAIFEEA---HKQV 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.49
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 52 REFTRRYKI--PDSVDANAISSKL 73
++ K+ DS A AI + +
Sbjct: 23 KKLQASLKLYADDSAPALAIKATM 46
Score = 28.4 bits (62), Expect = 0.67
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 82 QAPKKAVEAGAGERAIPVVQTPDSVDANAISSKL 115
QA KK ++A A DS A AI + +
Sbjct: 20 QALKK-LQASLKLYA------DDSAPALAIKATM 46
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 29.1 bits (66), Expect = 0.59
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
KP + ++K +D ++++ HE
Sbjct: 165 KPTQEEIKAMDASLILYTDHE 185
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 29.0 bits (66), Expect = 0.60
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
K ++ + ++ ++++A+HE
Sbjct: 167 KAAQMAIDCMNASLILYAEHE 187
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 29.0 bits (66), Expect = 0.62
Identities = 3/21 (14%), Positives = 12/21 (57%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
K + ++ ++ ++++ HE
Sbjct: 169 KATKEEIDAMNTALILYTDHE 189
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 28.3 bits (64), Expect = 0.87
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
PE V ++ ++++A+H
Sbjct: 209 VPETAVVSAFEQSMILYAEHG 229
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 28.2 bits (64), Expect = 0.90
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
+P ++ +DK ++++ HE
Sbjct: 164 EPTTDEINAMDKALILYTDHE 184
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 28.3 bits (64), Expect = 1.00
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
+P E K ++ Y+++ +H
Sbjct: 158 QPSEAKKKALETYMILATEHG 178
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 28.0 bits (63), Expect = 1.2
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 18 QQFKPEEIDVKVVDKYIVVHAKHE 41
+ +K + + +++ +++HA HE
Sbjct: 215 EPYKVNPVLARAMNRILILHADHE 238
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 28.0 bits (63), Expect = 1.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 18 QQFKPEEIDVKVVDKYIVVHAKHE 41
+ +KP+E+ +K +D ++HA HE
Sbjct: 212 ESYKPDELHIKAMDTIFMLHADHE 235
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 27.9 bits (63), Expect = 1.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
KP + K + +V++A+HE
Sbjct: 196 KPTQSWEKAMHISLVLYAEHE 216
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 27.6 bits (62), Expect = 1.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 73 LSSDGVLSIQAPKKAVEAGAG 93
+SSD +I+ KK G+G
Sbjct: 165 ISSDEFFNIKESKKIGIVGSG 185
Score = 25.7 bits (57), Expect = 7.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 115 LSSDGVLSIQAPKKAVEGGAG 135
+SSD +I+ KK G+G
Sbjct: 165 ISSDEFFNIKESKKIGIVGSG 185
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 27.6 bits (62), Expect = 1.9
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 18 QQFKPEEIDVKVVDKYIVVHAKHE 41
+ ++ I + +D+ +++HA HE
Sbjct: 207 EPYEVNPILERAMDRILILHADHE 230
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 27.5 bits (62), Expect = 2.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
+P EI K +D +++H HE
Sbjct: 161 RPNEIKSKAMDVTLILHIDHE 181
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 27.4 bits (61), Expect = 2.1
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 16/78 (20%)
Query: 22 PEEIDVKVVDKYIVVHAK------HEERSDQHGFISREFTRRYK------IPDSVD---- 65
ID D+ I+ HE +++++ +++
Sbjct: 94 DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPDIHR 153
Query: 66 ANAISSKLSSDGVLSIQA 83
+ + L DGV A
Sbjct: 154 IDGLKRMLKEDGVFISVA 171
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 27.2 bits (61), Expect = 2.1
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 20 FKPEEIDVKVVDKYIVVHAKHE 41
+ +++ Y+ +H+ HE
Sbjct: 216 GYTDPQFTELMRLYLTIHSDHE 237
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 27.1 bits (61), Expect = 2.2
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
+P + K +D ++++A+HE
Sbjct: 164 EPPKEWEKAMDVALILYAEHE 184
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 27.1 bits (61), Expect = 2.3
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
+ V+ + ++++A+H
Sbjct: 167 EAAPEVVEAFNVSMILYAEHS 187
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
in RSGI, structural genomics, lyase; 1.50A {Thermus
thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 26.7 bits (60), Expect = 2.9
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
+P +++D +++HA+H
Sbjct: 165 EPSPEQARLMDAALILHAEHG 185
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 26.8 bits (60), Expect = 3.0
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 21 KPEEIDVKVVDKYIVVHAKHE 41
+P+ + + +D Y+++HA HE
Sbjct: 195 EPDPLASRGIDLYLILHADHE 215
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural
genomics, structural genomics consortium, SGC,
hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB:
2ai6_A 2ozw_A 2ozx_A
Length = 144
Score = 25.0 bits (54), Expect = 8.4
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 7 AEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYK 59
E ++D+ +ID V KY+++ RS S+E R YK
Sbjct: 15 TENLYFQSMDLALIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYK 67
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper
protein, azurin-L thermophIle; 1.55A {Chloroflexus
aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Length = 140
Score = 24.9 bits (53), Expect = 8.6
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 3 ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFI 50
T A +E D F + + + QH ++
Sbjct: 13 ETPAQTVEVRAAPDALAFAQTSLSLPANTVVRLDFVNQNNLGVQHNWV 60
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 25.3 bits (56), Expect = 9.4
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 87 AVEAGAGERAIPVVQTPDS--VDANA-ISSKLSSDGVLSIQAPKKA 129
VE+ AG A D+ A A I +D V+ + P
Sbjct: 56 VVESAAGAGA----LFSDADYERAGATIGDPWPADVVVKVNPPTSD 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.340
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,171,299
Number of extensions: 122871
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 55
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.3 bits)