RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6564
         (150 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 47.5 bits (112), Expect = 4e-08
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 12  TVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQH--------GFISREFTRRYKIPDS 63
               D+   K EE+ V+V D  ++V +    +  +            S +F RR+++ + 
Sbjct: 55  VFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLED 114

Query: 64  VDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPV 99
                + + L  +GVL++  PK  V+     +AI +
Sbjct: 115 AKVEEVKAGL-ENGVLTVTVPKAEVKK-PEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 46.2 bits (109), Expect = 5e-08
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 12  TVNLDVQQFKPEEIDVKVVDKYIVVHAKH--------EERSDQHGFISREFTRRYKIPDS 63
            V   +     E+I +  V   + + AK         E           E  R  K+P +
Sbjct: 23  KVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPAT 82

Query: 64  VDANAISSKLSSDGVLSIQAPKKAVEAGAGERAIPV 99
           V     S+K   +GVLS+  PK        ++ I +
Sbjct: 83  VKEENASAKFE-NGVLSVILPKAESSI---KKGINI 114


>d2hw4a1 d.322.1.1 (A:5-122) Phosphohistidine phosphatase 1, PHP14
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 27.8 bits (62), Expect = 0.24
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 24 EIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYK 59
          +ID   V KY+++      RS      S+E  R YK
Sbjct: 9  DIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYK 44


>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 112

 Score = 25.6 bits (56), Expect = 1.7
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 2   LATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYI-----VVHAKHEERSDQHGFISREFTR 56
           +  TA  I   +            D+K  D Y      +    HE     HGF SR    
Sbjct: 44  MGRTALIIHPRLKDRSSSLADPASDIKTCDHYQNFPLYLGGETHEHYGIPHGFSSRIALE 103

Query: 57  RY 58
           RY
Sbjct: 104 RY 105


>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
           specificity factor subunit 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 451

 Score = 26.3 bits (56), Expect = 1.9
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 8/48 (16%)

Query: 17  VQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSV 64
           ++  KP  +        I+VH +  E +     + RE+    ++   V
Sbjct: 398 IRALKPPHV--------ILVHGEQNEMARLKAALIREYEDNDEVHIEV 437


>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545,
          C-terminal domain {Sulfolobus solfataricus [TaxId:
          2287]}
          Length = 73

 Score = 24.3 bits (53), Expect = 3.1
 Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 47 HGFISREFTRRYKIPDSVDANAIS 70
          H +I +E   +Y   + + + A S
Sbjct: 51 HSWIIKE-GEKYCPSEPLISLAFS 73


>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}
          Length = 129

 Score = 25.0 bits (54), Expect = 3.1
 Identities = 9/76 (11%), Positives = 20/76 (26%), Gaps = 3/76 (3%)

Query: 3  ATTAAEIEGTVNLDVQQFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPD 62
          A+    +      D   +    I V        V+ +H+    + G        +     
Sbjct: 1  ASCETTVTSG---DTMTYSTRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVG 57

Query: 63 SVDANAISSKLSSDGV 78
           V      +   ++ V
Sbjct: 58 DVAKEGAHAGADNNFV 73


>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 117

 Score = 24.3 bits (52), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 115 LSSDGVLSIQAPKKAVEGGAG 135
           +SSD   +I+  KK    G+G
Sbjct: 11  ISSDEFFNIKESKKIGIVGSG 31



 Score = 24.3 bits (52), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 73 LSSDGVLSIQAPKKAVEAGAG 93
          +SSD   +I+  KK    G+G
Sbjct: 11 ISSDEFFNIKESKKIGIVGSG 31


>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}
          Length = 128

 Score = 23.5 bits (50), Expect = 8.5
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 7  AEIEGTVNLDVQ-QFKPEEIDVKVVDKYIVVHAKHEERSDQHGFISREFTRRYKIPDSVD 65
          AE + TV+   Q  F  ++I +    K   V   H     ++         +      + 
Sbjct: 1  AECKVTVDSTDQMSFNTKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIA 60

Query: 66 ANAISSKLSSDGVLSIQAPKKA 87
           + +S+ +    +    A   A
Sbjct: 61 TDGLSAGIDKQYLKDGDARVIA 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.340 

Gapped
Lambda     K      H
   0.267   0.0383    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,971
Number of extensions: 20460
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 14
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.6 bits)