Query psy6565
Match_columns 185
No_of_seqs 122 out of 1145
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:22:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02341 chap_CCT_beta T-comp 100.0 2.9E-46 6.4E-51 334.7 22.8 175 2-176 343-517 (519)
2 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.5E-46 9.8E-51 333.4 22.7 174 2-175 342-515 (517)
3 PTZ00212 T-complex protein 1 s 100.0 6.3E-46 1.4E-50 333.5 22.4 175 2-176 354-528 (533)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 9.8E-46 2.1E-50 332.0 22.4 175 2-176 354-528 (531)
5 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.1E-45 2.4E-50 328.6 22.4 173 2-174 311-483 (484)
6 cd03335 TCP1_alpha TCP-1 (CTT 100.0 8.4E-46 1.8E-50 332.4 21.1 174 2-175 346-527 (527)
7 TIGR02344 chap_CCT_gamma T-com 100.0 2.3E-45 5E-50 329.4 22.4 174 2-175 349-523 (525)
8 cd03340 TCP1_eta TCP-1 (CTT or 100.0 7.2E-45 1.6E-49 326.0 21.9 173 2-174 347-520 (522)
9 KOG0361|consensus 100.0 5.8E-46 1.3E-50 312.8 13.6 180 2-181 351-530 (543)
10 cd03337 TCP1_gamma TCP-1 (CTT 100.0 7.8E-45 1.7E-49 322.9 21.2 171 2-172 308-479 (480)
11 TIGR02340 chap_CCT_alpha T-com 100.0 1.3E-44 2.8E-49 325.3 22.4 175 2-176 350-532 (536)
12 TIGR02346 chap_CCT_theta T-com 100.0 1.5E-44 3.2E-49 324.5 22.7 177 2-178 345-524 (531)
13 TIGR02345 chap_CCT_eta T-compl 100.0 1.2E-44 2.7E-49 324.5 22.2 173 2-174 348-520 (522)
14 TIGR02342 chap_CCT_delta T-com 100.0 7.9E-45 1.7E-49 325.4 20.6 172 2-173 344-516 (517)
15 cd03343 cpn60 cpn60 chaperonin 100.0 2.1E-44 4.6E-49 322.6 22.3 172 2-173 345-516 (517)
16 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.4E-44 3.1E-49 320.7 20.4 172 2-173 297-471 (472)
17 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.3E-44 5.1E-49 322.2 20.9 172 2-173 343-515 (515)
18 TIGR02339 thermosome_arch ther 100.0 4.8E-44 1E-48 320.5 22.3 171 2-172 348-518 (519)
19 cd03339 TCP1_epsilon TCP-1 (CT 100.0 7.4E-44 1.6E-48 319.7 20.9 170 2-171 353-525 (526)
20 TIGR02343 chap_CCT_epsi T-comp 100.0 1.9E-43 4.1E-48 317.4 21.6 172 2-173 357-531 (532)
21 cd00309 chaperonin_type_I_II c 100.0 1.9E-43 4.1E-48 312.7 21.3 171 2-172 294-464 (464)
22 KOG0363|consensus 100.0 6.1E-42 1.3E-46 287.1 16.8 180 3-182 348-527 (527)
23 PRK12849 groEL chaperonin GroE 100.0 1.8E-41 3.9E-46 304.8 21.2 172 3-180 323-529 (542)
24 PRK00013 groEL chaperonin GroE 100.0 2.8E-41 6.1E-46 303.5 20.8 168 4-176 324-526 (542)
25 PRK12851 groEL chaperonin GroE 100.0 8.2E-41 1.8E-45 300.6 20.8 152 20-177 376-527 (541)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 5.2E-41 1.1E-45 297.2 19.2 173 2-175 311-485 (485)
27 PRK12852 groEL chaperonin GroE 100.0 9.7E-41 2.1E-45 300.5 21.2 155 18-177 374-528 (545)
28 PRK12850 groEL chaperonin GroE 100.0 1.1E-40 2.5E-45 299.8 20.5 168 4-177 325-527 (544)
29 COG0459 GroL Chaperonin GroEL 100.0 5.4E-41 1.2E-45 299.7 17.8 174 3-178 341-518 (524)
30 PTZ00114 Heat shock protein 60 100.0 7.9E-40 1.7E-44 295.1 21.2 157 17-177 385-543 (555)
31 PRK14104 chaperonin GroEL; Pro 100.0 1.3E-39 2.9E-44 293.0 20.7 169 3-176 324-527 (546)
32 cd03344 GroEL GroEL_like type 100.0 1E-39 2.2E-44 292.4 18.3 163 4-172 322-519 (520)
33 TIGR02348 GroEL chaperonin Gro 100.0 3.3E-39 7.2E-44 289.4 19.8 150 20-175 374-523 (524)
34 CHL00093 groEL chaperonin GroE 100.0 3.4E-39 7.5E-44 289.6 18.9 153 19-176 374-527 (529)
35 KOG0357|consensus 100.0 1.3E-39 2.7E-44 270.1 14.5 173 3-175 222-397 (400)
36 KOG0364|consensus 100.0 7.3E-39 1.6E-43 272.8 10.8 174 2-175 349-522 (527)
37 KOG0358|consensus 100.0 4.2E-38 9.1E-43 264.9 12.9 169 5-173 364-533 (534)
38 PLN03167 Chaperonin-60 beta su 100.0 1.3E-37 2.9E-42 282.2 15.7 155 20-178 429-585 (600)
39 KOG0359|consensus 100.0 3.4E-35 7.3E-40 250.2 17.2 172 2-175 345-516 (520)
40 KOG0360|consensus 100.0 3.4E-35 7.4E-40 252.2 10.0 177 2-179 357-541 (545)
41 KOG0362|consensus 100.0 2.2E-33 4.7E-38 242.2 15.6 178 2-180 348-527 (537)
42 KOG0356|consensus 99.9 1.5E-24 3.2E-29 189.8 12.2 154 18-178 388-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 98.9 1.6E-09 3.4E-14 89.9 6.6 55 2-56 197-256 (261)
44 KOG0230|consensus 75.2 2.6 5.6E-05 42.7 3.0 55 7-62 520-575 (1598)
45 KOG2663|consensus 49.6 18 0.0004 30.1 3.0 30 19-49 119-148 (309)
46 PF07278 DUF1441: Protein of u 45.8 52 0.0011 25.2 4.8 28 84-111 101-128 (152)
47 smart00574 POX domain associat 40.6 64 0.0014 24.4 4.5 44 32-75 85-128 (140)
48 COG3962 Acetolactate synthase 36.5 30 0.00065 31.5 2.5 40 37-77 216-255 (617)
49 PF04864 Alliinase_C: Allinase 32.8 65 0.0014 28.1 3.9 40 29-68 41-81 (363)
50 COG2054 Uncharacterized archae 32.2 1.7E+02 0.0037 23.4 5.8 20 54-73 29-48 (212)
51 PF07685 GATase_3: CobB/CobQ-l 31.4 1.7E+02 0.0036 21.9 5.7 52 22-73 10-61 (158)
52 TIGR02763 chlamy_scaf chlamydi 31.4 80 0.0017 22.6 3.5 35 82-116 33-70 (114)
53 PF07526 POX: Associated with 30.5 1.4E+02 0.0029 22.5 4.9 41 32-75 85-128 (140)
54 COG3797 Uncharacterized protei 30.4 80 0.0017 24.8 3.7 52 22-73 10-62 (178)
55 PF06760 DUF1221: Protein of u 30.1 2.7E+02 0.006 22.3 6.7 68 29-112 45-119 (217)
56 KOG1336|consensus 29.0 1.1E+02 0.0025 27.7 4.9 70 38-107 198-271 (478)
57 COG0049 RpsG Ribosomal protein 28.9 94 0.002 23.7 3.8 35 79-117 32-66 (148)
58 COG4741 Predicted secreted end 28.3 1.1E+02 0.0025 23.5 4.1 46 4-49 112-161 (175)
59 PTZ00091 40S ribosomal protein 28.0 95 0.0021 24.7 3.8 35 79-117 72-106 (193)
60 PF02061 Lambda_CIII: Lambda P 27.9 1.3E+02 0.0027 17.9 3.4 28 29-56 17-44 (45)
61 TIGR02969 mam_aldehyde_ox alde 27.6 51 0.0011 33.8 2.8 82 24-105 260-349 (1330)
62 TIGR03092 SASP_sspI small, aci 27.2 1.8E+02 0.004 18.9 4.9 40 25-72 10-49 (65)
63 PRK01641 leuD isopropylmalate 27.0 1.5E+02 0.0033 23.7 4.9 106 59-174 78-189 (200)
64 TIGR01028 S7_S5_E_A ribosomal 26.4 1.2E+02 0.0026 24.0 4.1 35 79-117 65-99 (186)
65 PRK04027 30S ribosomal protein 26.3 1.1E+02 0.0024 24.4 3.9 35 79-117 74-108 (195)
66 PF14850 Pro_dh-DNA_bdg: DNA-b 25.8 63 0.0014 23.5 2.3 31 69-101 5-35 (114)
67 PHA02694 hypothetical protein; 24.1 1.2E+02 0.0027 24.4 3.8 34 60-93 122-155 (292)
68 PRK02955 small acid-soluble sp 23.3 2.3E+02 0.005 18.7 5.1 40 24-71 12-51 (68)
69 PF03135 CagE_TrbE_VirB: CagE, 22.5 1.5E+02 0.0032 23.1 4.1 28 19-46 149-176 (205)
70 cd07639 BAR_ACAP1 The Bin/Amph 21.7 4.2E+02 0.0091 21.1 7.1 74 30-106 8-86 (200)
71 PF07818 HCNGP: HCNGP-like pro 21.5 1.3E+02 0.0028 21.1 3.1 57 96-163 30-86 (96)
72 COG1111 MPH1 ERCC4-like helica 21.4 6.6E+02 0.014 23.3 8.9 89 29-118 217-312 (542)
73 PF01923 Cob_adeno_trans: Coba 21.3 3.7E+02 0.008 20.3 7.8 29 34-62 82-112 (163)
74 PF05908 DUF867: Protein of un 20.4 1.6E+02 0.0035 23.4 3.8 35 7-42 92-126 (194)
No 1
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-46 Score=334.69 Aligned_cols=175 Identities=71% Similarity=1.092 Sum_probs=169.3
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+.||+++|++|++|++++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++.+++
T Consensus 343 ~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~ 422 (519)
T TIGR02341 343 IMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGK 422 (519)
T ss_pred EEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCCh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|.++..++|+|+.+|++.||++.|||||+.+|+++|+.|+++|
T Consensus 423 ~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a 502 (519)
T TIGR02341 423 EALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAA 502 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887778999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcCCC
Q psy6565 162 EMILRVDNIIKAAPR 176 (185)
Q Consensus 162 ~~iL~iD~iI~~~~~ 176 (185)
++||+||++|..+|+
T Consensus 503 ~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 503 EVILRVDNIIKAAPR 517 (519)
T ss_pred HHHHhHHHHHhcCCC
Confidence 999999999999873
No 2
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.5e-46 Score=333.44 Aligned_cols=174 Identities=74% Similarity=1.108 Sum_probs=168.9
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+.+|+++|++|++|++++++||+|||+|+.+++|.+|+++||++++++++++++||||||++|++++.+|++++++.+++
T Consensus 342 ~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~ 421 (517)
T cd03336 342 IMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGK 421 (517)
T ss_pred EEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|.++..++|+|..+|++.||++.|||||+.+|+++|+.|+++|
T Consensus 422 ~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 501 (517)
T cd03336 422 KSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAA 501 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887778999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcCC
Q psy6565 162 EMILRVDNIIKAAP 175 (185)
Q Consensus 162 ~~iL~iD~iI~~~~ 175 (185)
++||+||++|..+|
T Consensus 502 ~~iL~id~ii~~~~ 515 (517)
T cd03336 502 EMILRVDDIIKCAP 515 (517)
T ss_pred HHHHhHhHHhhcCC
Confidence 99999999999876
No 3
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.3e-46 Score=333.52 Aligned_cols=175 Identities=66% Similarity=1.038 Sum_probs=169.0
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+.+|+++|++|++|+.+++|||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++..++
T Consensus 354 ~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~ 433 (533)
T PTZ00212 354 IMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGK 433 (533)
T ss_pred EEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|.++..++|+|+.+|++.||++.|||||+.+|+++|+.|+++|
T Consensus 434 ~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a 513 (533)
T PTZ00212 434 KSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAA 513 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887778999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcCCC
Q psy6565 162 EMILRVDNIIKAAPR 176 (185)
Q Consensus 162 ~~iL~iD~iI~~~~~ 176 (185)
++||+||++|...|+
T Consensus 514 ~~iL~id~ii~~~~~ 528 (533)
T PTZ00212 514 EMILRVDDIIRCAPR 528 (533)
T ss_pred HHHHhhhHhhhcCCc
Confidence 999999999998653
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.8e-46 Score=331.97 Aligned_cols=175 Identities=29% Similarity=0.500 Sum_probs=168.7
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
++||+++|++|++|++++++||+|||+|+.+++|++|+++||+++++++++++++|||||++|++++.+|++++.+.+++
T Consensus 354 ~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~ 433 (531)
T TIGR02347 354 TSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGK 433 (531)
T ss_pred EEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|++.||.+.|||||+.+|+++|++|+++|
T Consensus 434 ~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a 513 (531)
T TIGR02347 434 AKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIA 513 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877778999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcCCC
Q psy6565 162 EMILRVDNIIKAAPR 176 (185)
Q Consensus 162 ~~iL~iD~iI~~~~~ 176 (185)
++|||||++|..+|.
T Consensus 514 ~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 514 SQLLLVDEVMRAGRS 528 (531)
T ss_pred HHHHhHHHHHhCccc
Confidence 999999999998663
No 5
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-45 Score=328.58 Aligned_cols=173 Identities=31% Similarity=0.518 Sum_probs=167.1
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+.+|+++|++|++|+.++++||+|||+|+.+++|++|+++||+++++++++++++|||||++|++++.+|++++++.+++
T Consensus 311 ~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~ 390 (484)
T cd03342 311 RTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGK 390 (484)
T ss_pred EEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCH
Confidence 47899999999999999999999999999999999999999999999999998899999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|.++..++|+|+.+|++.||++.|||||+.+|+++|+.|+++|
T Consensus 391 ~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 470 (484)
T cd03342 391 AKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIA 470 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877778999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcC
Q psy6565 162 EMILRVDNIIKAA 174 (185)
Q Consensus 162 ~~iL~iD~iI~~~ 174 (185)
++|||||++|..+
T Consensus 471 ~~iL~ID~ii~~~ 483 (484)
T cd03342 471 SQLLLVDEIIRAG 483 (484)
T ss_pred HHHhhhhHhhhcC
Confidence 9999999999763
No 6
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.4e-46 Score=332.39 Aligned_cols=174 Identities=41% Similarity=0.606 Sum_probs=166.9
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
++||+++|++|++|++++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|+++++..+++
T Consensus 346 ~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~ 425 (527)
T cd03335 346 ERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSR 425 (527)
T ss_pred EEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcH
Confidence 46899999999999999999999999999999999999999999999999998999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCC--------CCceeEeCCCCcccccccCCccccHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG--------KSTAGLDMDQGKVGDMSQLGITESYVVKRQV 153 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~--------~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~ 153 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|..+ +.++|+|+.+|++.||++.|||||+.+|.++
T Consensus 426 ~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~ 505 (527)
T cd03335 426 EQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKS 505 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHH
Confidence 99999999999999999999999999999999999999765 3478999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcHHHHHhcCC
Q psy6565 154 LTSASEAAEMILRVDNIIKAAP 175 (185)
Q Consensus 154 l~~a~~~a~~iL~iD~iI~~~~ 175 (185)
|+.|+|+|++|||||++|..+|
T Consensus 506 i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 506 LKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred HHHHHHHHHHHHhhcceeecCC
Confidence 9999999999999999998764
No 7
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-45 Score=329.42 Aligned_cols=174 Identities=34% Similarity=0.575 Sum_probs=167.9
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+++|+++|++|++|++++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++.+++
T Consensus 349 ~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~ 428 (525)
T TIGR02344 349 KKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGV 428 (525)
T ss_pred EEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCC-CCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG-KSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEA 160 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~-~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~ 160 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|+++ ..++|+|..+|++.||.+.|||||+.+|+++|+.|+++
T Consensus 429 ~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~ 508 (525)
T TIGR02344 429 QQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIES 508 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876 56899999999999999999999999999999999999
Q ss_pred HHHHHcHHHHHhcCC
Q psy6565 161 AEMILRVDNIIKAAP 175 (185)
Q Consensus 161 a~~iL~iD~iI~~~~ 175 (185)
|++||+||++|...|
T Consensus 509 a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 509 ACMLLRIDDIVSGVK 523 (525)
T ss_pred HHHHHhhhHHhhcCC
Confidence 999999999998866
No 8
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.2e-45 Score=326.01 Aligned_cols=173 Identities=35% Similarity=0.622 Sum_probs=167.0
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+++|+++|++|++|+.++.+||++||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++..++
T Consensus 347 ~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~ 426 (522)
T cd03340 347 RQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGK 426 (522)
T ss_pred EEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCC-CceeEeCCCCcccccccCCccccHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK-STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEA 160 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~-~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~ 160 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|.+++ .++|+|+.+|++.||.+.|||||+.+|+++|+.|+++
T Consensus 427 ~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~ 506 (522)
T cd03340 427 QQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEA 506 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776 6899999999999999999999999999999999999
Q ss_pred HHHHHcHHHHHhcC
Q psy6565 161 AEMILRVDNIIKAA 174 (185)
Q Consensus 161 a~~iL~iD~iI~~~ 174 (185)
|++||+||++|..+
T Consensus 507 a~~iL~id~ii~~~ 520 (522)
T cd03340 507 ACLILSVDETIKNP 520 (522)
T ss_pred HHHHhhhhhheeCC
Confidence 99999999999874
No 9
>KOG0361|consensus
Probab=100.00 E-value=5.8e-46 Score=312.77 Aligned_cols=180 Identities=32% Similarity=0.579 Sum_probs=173.3
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
.++|+++|.+|+||+..++||+++||+-++.++|.+|++|||++++|.++++..||+|||++||.++++|++|+..+.++
T Consensus 351 ~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK 430 (543)
T KOG0361|consen 351 RQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGK 430 (543)
T ss_pred HhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+|+.+.+|++|||.||++|+.|+|+|..+++++||..|++|..|+|+|++++.+.|+.+.+||||..+|.+++..|+|+|
T Consensus 431 ~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa 510 (543)
T KOG0361|consen 431 QQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAA 510 (543)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcCCCCCCcC
Q psy6565 162 EMILRVDNIIKAAPRKRTED 181 (185)
Q Consensus 162 ~~iL~iD~iI~~~~~~~~~~ 181 (185)
++||++|+.|+..+....|+
T Consensus 511 ~lIlsvDeTikn~~S~~~~p 530 (543)
T KOG0361|consen 511 CLILSVDETIKNPKSQSAPP 530 (543)
T ss_pred hheEehhhhhcCCcccCCCC
Confidence 99999999999866444333
No 10
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.8e-45 Score=322.90 Aligned_cols=171 Identities=37% Similarity=0.598 Sum_probs=164.9
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+++|+++|++|++|++++++||+|||+|+.+++|++|+++||+++++++++++++|||||++|++++.+|++++++.+++
T Consensus 308 ~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~ 387 (480)
T cd03337 308 KKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGV 387 (480)
T ss_pred EEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCC-CCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG-KSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEA 160 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~-~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~ 160 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|.++ ..++|+|+.+|++.||++.|||||+.+|+++|+.|+++
T Consensus 388 ~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~ 467 (480)
T cd03337 388 EQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEA 467 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876 56899999999999999999999999999999999999
Q ss_pred HHHHHcHHHHHh
Q psy6565 161 AEMILRVDNIIK 172 (185)
Q Consensus 161 a~~iL~iD~iI~ 172 (185)
|++||+||++|.
T Consensus 468 a~~iL~id~ii~ 479 (480)
T cd03337 468 ACMLLRIDDIVS 479 (480)
T ss_pred HHHHhhhhheec
Confidence 999999999985
No 11
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-44 Score=325.28 Aligned_cols=175 Identities=39% Similarity=0.594 Sum_probs=167.0
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
++||+++|++|++|+.++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++.+++
T Consensus 350 ~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~ 429 (536)
T TIGR02340 350 ERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSR 429 (536)
T ss_pred EEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCCh
Confidence 46899999999999999999999999999999999999999999999999998899999999999999999988888899
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCC--------CCceeEeCCCCcccccccCCccccHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG--------KSTAGLDMDQGKVGDMSQLGITESYVVKRQV 153 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~--------~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~ 153 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|..+ ..++|+|+.+|++.||.+.|||||+.+|+++
T Consensus 430 ~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~ 509 (536)
T TIGR02340 430 EQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKS 509 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHH
Confidence 99999999999999999999999999999999999998764 2468999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcHHHHHhcCCC
Q psy6565 154 LTSASEAAEMILRVDNIIKAAPR 176 (185)
Q Consensus 154 l~~a~~~a~~iL~iD~iI~~~~~ 176 (185)
|+.|+|+|++|||||++|...|+
T Consensus 510 l~~A~e~a~~iL~ID~ii~~~~~ 532 (536)
T TIGR02340 510 LKFATEAAITILRIDDLIKLNPE 532 (536)
T ss_pred HHHHHHHHHHHHhhhhhhhcCCC
Confidence 99999999999999999998764
No 12
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-44 Score=324.51 Aligned_cols=177 Identities=32% Similarity=0.577 Sum_probs=168.0
Q ss_pred EEeCCeeEEEEEcCC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCc
Q psy6565 2 VMIGEDTLLRFSGVP-LGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG 80 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~-~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 80 (185)
+++|+++|++|++|+ +++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++.++
T Consensus 345 ~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~ 424 (531)
T TIGR02346 345 SEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPG 424 (531)
T ss_pred EEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCC
Confidence 467999999999998 5899999999999999999999999999999999999889999999999999999999888889
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCc--ccccccCCccccHHHHHHHHHHHH
Q psy6565 81 KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGK--VGDMSQLGITESYVVKRQVLTSAS 158 (185)
Q Consensus 81 ~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~--~~d~~~~gI~ep~~vk~~~l~~a~ 158 (185)
++++++++|++||+.||++|++|||+|+.+++.+|++.|++++.++|+|..+|+ +.||++.|||||+.+|+++|++|+
T Consensus 425 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 504 (531)
T TIGR02346 425 LDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLAT 504 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876678999999999 599999999999999999999999
Q ss_pred HHHHHHHcHHHHHhcCCCCC
Q psy6565 159 EAAEMILRVDNIIKAAPRKR 178 (185)
Q Consensus 159 ~~a~~iL~iD~iI~~~~~~~ 178 (185)
++|++||+||++|...|...
T Consensus 505 e~a~~iL~id~ii~~~~~~~ 524 (531)
T TIGR02346 505 EAAVTVLRVDQIIMAKPAGG 524 (531)
T ss_pred HHHHHHhhhhHhhccCCCCC
Confidence 99999999999999876544
No 13
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-44 Score=324.47 Aligned_cols=173 Identities=35% Similarity=0.638 Sum_probs=167.0
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+++|+++|++|+||++++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++..++
T Consensus 348 ~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~ 427 (522)
T TIGR02345 348 RQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGK 427 (522)
T ss_pred EEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|..+..++|+|+.+|++.||.+.|||||+.+|+++|+.|+++|
T Consensus 428 ~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a 507 (522)
T TIGR02345 428 QQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAA 507 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877678999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcC
Q psy6565 162 EMILRVDNIIKAA 174 (185)
Q Consensus 162 ~~iL~iD~iI~~~ 174 (185)
++||+||++|..+
T Consensus 508 ~~iL~id~ii~~~ 520 (522)
T TIGR02345 508 CTILSIDETIMNP 520 (522)
T ss_pred HHHHhHHHHHhCC
Confidence 9999999999873
No 14
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.9e-45 Score=325.43 Aligned_cols=172 Identities=35% Similarity=0.647 Sum_probs=165.9
Q ss_pred EEeCCeeEEEEEcCCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCc
Q psy6565 2 VMIGEDTLLRFSGVPL-GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG 80 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~-~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 80 (185)
+++|+++|++|++|++ ++++||+|||+|+.+++|++|+++||+++++++++++++|||||++|++++.+|++++++.++
T Consensus 344 ~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~ 423 (517)
T TIGR02342 344 VTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKG 423 (517)
T ss_pred EEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCc
Confidence 5689999999999998 499999999999999999999999999999999999999999999999999999999888899
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHH
Q psy6565 81 KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEA 160 (185)
Q Consensus 81 ~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~ 160 (185)
++++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|..+|++.||++.|||||+.+|+++|++|+++
T Consensus 424 ~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~ 503 (517)
T TIGR02342 424 VESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASET 503 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777899999999999999999999999999999999999
Q ss_pred HHHHHcHHHHHhc
Q psy6565 161 AEMILRVDNIIKA 173 (185)
Q Consensus 161 a~~iL~iD~iI~~ 173 (185)
|++||+||++|..
T Consensus 504 a~~iL~iD~ii~~ 516 (517)
T TIGR02342 504 VRMILKIDDIVFT 516 (517)
T ss_pred HHHHhcccceeec
Confidence 9999999999875
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.1e-44 Score=322.60 Aligned_cols=172 Identities=42% Similarity=0.665 Sum_probs=166.0
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+++|+++|++|++|++++.+||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++.+.+++
T Consensus 345 ~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~ 424 (517)
T cd03343 345 RKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGR 424 (517)
T ss_pred EEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|++.||.+.|||||+.+|+++|+.|+++|
T Consensus 425 ~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 504 (517)
T cd03343 425 EQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAA 504 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999766678999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhc
Q psy6565 162 EMILRVDNIIKA 173 (185)
Q Consensus 162 ~~iL~iD~iI~~ 173 (185)
++||+||++|+.
T Consensus 505 ~~iL~id~ii~~ 516 (517)
T cd03343 505 TMILRIDDVIAA 516 (517)
T ss_pred HHHHhhhHhhhC
Confidence 999999999975
No 16
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-44 Score=320.67 Aligned_cols=172 Identities=36% Similarity=0.601 Sum_probs=165.4
Q ss_pred EEeCCeeEEEEEcCCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCc
Q psy6565 2 VMIGEDTLLRFSGVPL-GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG 80 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~-~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 80 (185)
+++|+++|++|++|++ ++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++.++
T Consensus 297 ~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~ 376 (472)
T cd03341 297 EEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPG 376 (472)
T ss_pred EEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCC
Confidence 4689999999999987 899999999999999999999999999999999999999999999999999999999878889
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCC--cccccccCCccccHHHHHHHHHHHH
Q psy6565 81 KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQG--KVGDMSQLGITESYVVKRQVLTSAS 158 (185)
Q Consensus 81 ~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~--~~~d~~~~gI~ep~~vk~~~l~~a~ 158 (185)
++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|..+| ++.||++.|||||+.+|+++|++|+
T Consensus 377 ~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~ 456 (472)
T cd03341 377 LEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLAT 456 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987767899999999 9999999999999999999999999
Q ss_pred HHHHHHHcHHHHHhc
Q psy6565 159 EAAEMILRVDNIIKA 173 (185)
Q Consensus 159 ~~a~~iL~iD~iI~~ 173 (185)
++|++||+||++|..
T Consensus 457 e~a~~iL~id~ii~~ 471 (472)
T cd03341 457 EAAVTVLRVDQIIMA 471 (472)
T ss_pred HHHHHHhhhcceeec
Confidence 999999999999864
No 17
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-44 Score=322.23 Aligned_cols=172 Identities=35% Similarity=0.673 Sum_probs=165.4
Q ss_pred EEeCCeeEEEEEcCCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCc
Q psy6565 2 VMIGEDTLLRFSGVPL-GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG 80 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~-~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 80 (185)
+++|+++|++|++|++ ++++||+|||+|+.+++|++|+++||+++++++++++++|||||++|++++.+|++++++.++
T Consensus 343 ~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~ 422 (515)
T cd03338 343 VSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTG 422 (515)
T ss_pred EEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCc
Confidence 4678999999999998 699999999999999999999999999999999999889999999999999999999888889
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHH
Q psy6565 81 KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEA 160 (185)
Q Consensus 81 ~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~ 160 (185)
++++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|++.||++.|||||+.+|+++|+.|+++
T Consensus 423 ~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~ 502 (515)
T cd03338 423 VEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATET 502 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred HHHHHcHHHHHhc
Q psy6565 161 AEMILRVDNIIKA 173 (185)
Q Consensus 161 a~~iL~iD~iI~~ 173 (185)
|++||+||++|..
T Consensus 503 a~~iL~ID~ii~~ 515 (515)
T cd03338 503 VRMILKIDDIVLA 515 (515)
T ss_pred HHHHhccchhhcC
Confidence 9999999999863
No 18
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=4.8e-44 Score=320.53 Aligned_cols=171 Identities=40% Similarity=0.667 Sum_probs=165.3
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+++|+++|++|++|.++..+||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++++.+++
T Consensus 348 ~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~ 427 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGR 427 (519)
T ss_pred EEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCH
Confidence 46899999999999999999999999999999999999999999999999998999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|++.||.+.|||||+.+|+++|+.|+++|
T Consensus 428 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 507 (519)
T TIGR02339 428 EQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAA 507 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876678999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHh
Q psy6565 162 EMILRVDNIIK 172 (185)
Q Consensus 162 ~~iL~iD~iI~ 172 (185)
++||+||++|.
T Consensus 508 ~~iL~id~ii~ 518 (519)
T TIGR02339 508 TMILRIDDVIA 518 (519)
T ss_pred HHHHhHhHHhh
Confidence 99999999985
No 19
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-44 Score=319.73 Aligned_cols=170 Identities=36% Similarity=0.648 Sum_probs=162.1
Q ss_pred EEeCC--eeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCC
Q psy6565 2 VMIGE--DTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTP 79 (185)
Q Consensus 2 ~~ig~--~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~ 79 (185)
++||+ ++|++|++|++++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|+++++..+
T Consensus 353 ~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 432 (526)
T cd03339 353 ISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCS 432 (526)
T ss_pred EEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCC
Confidence 45775 6899999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCC-CCceeEeCCCCcccccccCCccccHHHHHHHHHHHH
Q psy6565 80 GKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG-KSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSAS 158 (185)
Q Consensus 80 ~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~-~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~ 158 (185)
+++++++++|++||+.||++|++|||+|+.+++.+|+..|.++ ..++|+|+.+|++.||++.|||||+.+|+++|+.|+
T Consensus 433 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~ 512 (526)
T cd03339 433 GIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLAT 512 (526)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999643 557999999999999999999999999999999999
Q ss_pred HHHHHHHcHHHHH
Q psy6565 159 EAAEMILRVDNII 171 (185)
Q Consensus 159 ~~a~~iL~iD~iI 171 (185)
++|++||+||++|
T Consensus 513 e~a~~iL~iD~ii 525 (526)
T cd03339 513 QVVKMILKIDDVI 525 (526)
T ss_pred HHHHHHhhhceec
Confidence 9999999999987
No 20
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-43 Score=317.40 Aligned_cols=172 Identities=35% Similarity=0.613 Sum_probs=163.7
Q ss_pred EEeCC--eeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCC
Q psy6565 2 VMIGE--DTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTP 79 (185)
Q Consensus 2 ~~ig~--~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~ 79 (185)
+++|+ ++|++|++|++++++||+|||+|+.+++|++|+++||+++++++++++++|||||++|++++.+|++++.+.+
T Consensus 357 ~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 436 (532)
T TIGR02343 357 ISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYS 436 (532)
T ss_pred EEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCC
Confidence 45777 4899999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCC-CCceeEeCCCCcccccccCCccccHHHHHHHHHHHH
Q psy6565 80 GKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG-KSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSAS 158 (185)
Q Consensus 80 ~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~-~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~ 158 (185)
+++++++++|++||+.||++|++|+|+|+.+++.+|++.|..+ ..++|+|..+|++.||++.|||||+.+|+++|+.|+
T Consensus 437 ~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~ 516 (532)
T TIGR02343 437 GVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLAT 516 (532)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999754 557999999999999999999999999999999999
Q ss_pred HHHHHHHcHHHHHhc
Q psy6565 159 EAAEMILRVDNIIKA 173 (185)
Q Consensus 159 ~~a~~iL~iD~iI~~ 173 (185)
++|++||+||++|..
T Consensus 517 e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 517 QLVRMILKIDDVISP 531 (532)
T ss_pred HHHHHHHhHhhhccC
Confidence 999999999999964
No 21
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.9e-43 Score=312.75 Aligned_cols=171 Identities=44% Similarity=0.717 Sum_probs=165.4
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
.++|+++|++|++|+.++++||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++.+.+++
T Consensus 294 ~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~ 373 (464)
T cd00309 294 TKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGK 373 (464)
T ss_pred EEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++++++|++||+.||++|++|||+|+.+++.+|++.|..+..++|+|..+|++.||.+.|||||+.+|+++|+.|+|+|
T Consensus 374 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a 453 (464)
T cd00309 374 EQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAA 453 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877778999999999999999999999999999999999999
Q ss_pred HHHHcHHHHHh
Q psy6565 162 EMILRVDNIIK 172 (185)
Q Consensus 162 ~~iL~iD~iI~ 172 (185)
++||+||++|.
T Consensus 454 ~~iL~id~ii~ 464 (464)
T cd00309 454 SLILTIDDIIV 464 (464)
T ss_pred HHHHhHHHHhC
Confidence 99999999984
No 22
>KOG0363|consensus
Probab=100.00 E-value=6.1e-42 Score=287.06 Aligned_cols=180 Identities=72% Similarity=1.090 Sum_probs=175.6
Q ss_pred EeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchH
Q psy6565 3 MIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKE 82 (185)
Q Consensus 3 ~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~ 82 (185)
.||++++++|+||+.+..|||++||+|++++||.+|++|||||++....++++++.|||+.||..+.++.+++...+|++
T Consensus 348 miGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGke 427 (527)
T KOG0363|consen 348 MIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKE 427 (527)
T ss_pred hcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHH
Q psy6565 83 AVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAE 162 (185)
Q Consensus 83 ~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~ 162 (185)
.+++++|++||.++|.+|+.|+|+|+.+++.+||+.|+++...+|+|.++|++.||.+.||+|.+.+|.+++.+|.|++.
T Consensus 428 a~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae 507 (527)
T KOG0363|consen 428 ALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAE 507 (527)
T ss_pred hHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcHHHHHhcCCCCCCcCC
Q psy6565 163 MILRVDNIIKAAPRKRTEDR 182 (185)
Q Consensus 163 ~iL~iD~iI~~~~~~~~~~~ 182 (185)
+|||+|.||++.|+++.+++
T Consensus 508 ~ilrvD~Iik~aPR~r~~~~ 527 (527)
T KOG0363|consen 508 MILRVDNIIKAAPRERERDH 527 (527)
T ss_pred HHHhhhhhhhcCCcccccCC
Confidence 99999999999998887653
No 23
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-41 Score=304.78 Aligned_cols=172 Identities=26% Similarity=0.377 Sum_probs=161.2
Q ss_pred EeCCeeEEEEEcCCCC-----------------------------------ceEEEEecCCChhhHHHHHHHHHHHHHHH
Q psy6565 3 MIGEDTLLRFSGVPLG-----------------------------------EACTIVIRGATQQIIDEADRSLHDALCVL 47 (185)
Q Consensus 3 ~ig~~~~~~~~~~~~~-----------------------------------~~~Ti~i~G~s~~~l~E~~r~i~dal~~~ 47 (185)
.+++++|++|++|.++ +++||+|||+|+.+++|++|+++||++++
T Consensus 323 ~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~ 402 (542)
T PRK12849 323 TITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNAT 402 (542)
T ss_pred EEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467899999998875 59999999999999999999999999999
Q ss_pred HHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCcee
Q psy6565 48 AATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAG 127 (185)
Q Consensus 48 ~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~G 127 (185)
++++++ +||||||++|++++.+|.+++ +.++++++++++|++||+.||++|++|||+|+.+++.+|++.| +++|
T Consensus 403 ~~a~~~-g~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G 476 (542)
T PRK12849 403 RAAVEE-GIVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFG 476 (542)
T ss_pred HHHHHc-CeecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcc
Confidence 999999 699999999999999999998 8899999999999999999999999999999999999998875 4699
Q ss_pred EeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCCCCCc
Q psy6565 128 LDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTE 180 (185)
Q Consensus 128 id~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~~~~~ 180 (185)
+|..+|++.||++.|||||+.+|.++|++|+++|++||+||++|..+|.+..|
T Consensus 477 ~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~ 529 (542)
T PRK12849 477 FNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP 529 (542)
T ss_pred eeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC
Confidence 99999999999999999999999999999999999999999999998865444
No 24
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.8e-41 Score=303.53 Aligned_cols=168 Identities=26% Similarity=0.371 Sum_probs=158.9
Q ss_pred eCCeeEEEEEcCCCCc-----------------------------------eEEEEecCCChhhHHHHHHHHHHHHHHHH
Q psy6565 4 IGEDTLLRFSGVPLGE-----------------------------------ACTIVIRGATQQIIDEADRSLHDALCVLA 48 (185)
Q Consensus 4 ig~~~~~~~~~~~~~~-----------------------------------~~Ti~i~G~s~~~l~E~~r~i~dal~~~~ 48 (185)
+..++|++|++|.+++ ++||+|||+|+.+++|++|+++||+++++
T Consensus 324 ~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk 403 (542)
T PRK00013 324 VTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATR 403 (542)
T ss_pred EecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467999999998765 78999999999999999999999999999
Q ss_pred HHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeE
Q psy6565 49 ATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGL 128 (185)
Q Consensus 49 ~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gi 128 (185)
+++++ +||||||++|++++.+|+++ .+.++++++++++|++||+.||++|++|||+|+.+++.+|++.| +.++|+
T Consensus 404 ~al~~-g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~ 478 (542)
T PRK00013 404 AAVEE-GIVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGY 478 (542)
T ss_pred HHHHc-CcccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeE
Confidence 99999 69999999999999999998 67889999999999999999999999999999999999999887 357999
Q ss_pred eCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCC
Q psy6565 129 DMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPR 176 (185)
Q Consensus 129 d~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~ 176 (185)
|..+|++.||++.|||||+.+|.++|++|+++|++||+||++|..+|.
T Consensus 479 d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~ 526 (542)
T PRK00013 479 NAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPE 526 (542)
T ss_pred eCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999998875
No 25
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.2e-41 Score=300.58 Aligned_cols=152 Identities=26% Similarity=0.407 Sum_probs=145.8
Q ss_pred eEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHH
Q psy6565 20 ACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTT 99 (185)
Q Consensus 20 ~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~ 99 (185)
++||+|||+|+.+++|++|+++||++++++++++ +||||||++|++++.+|++++.. ++++++++++|++||+.||++
T Consensus 376 ~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~-g~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~ 453 (541)
T PRK12851 376 VAVIRVGASTEVEVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRRALEAPVRQ 453 (541)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CcccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999 69999999999999999999876 889999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCCC
Q psy6565 100 IADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177 (185)
Q Consensus 100 L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~~ 177 (185)
|++|||+|+.+++.+|++.| .++|+|..+|++.||++.|||||+.+|.++|++|+++|++||+||++|..+|.+
T Consensus 454 La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 527 (541)
T PRK12851 454 IAENAGAEGSVVVGKLREKP----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKK 527 (541)
T ss_pred HHHhcCCCHHHHHHHHHhhC----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCC
Confidence 99999999999999999876 368999999999999999999999999999999999999999999999988754
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=5.2e-41 Score=297.20 Aligned_cols=173 Identities=40% Similarity=0.671 Sum_probs=166.3
Q ss_pred EEeCCeeEEEEE--cCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCC
Q psy6565 2 VMIGEDTLLRFS--GVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTP 79 (185)
Q Consensus 2 ~~ig~~~~~~~~--~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~ 79 (185)
..+|+++|++|+ +|..++.+||+|||+|+.+++|++|+++||++++++++++++||||||++|++++.+|++++.+.+
T Consensus 311 ~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~ 390 (485)
T PF00118_consen 311 REIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLS 390 (485)
T ss_dssp EEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSS
T ss_pred cccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhccc
Confidence 368999999999 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHH
Q psy6565 80 GKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASE 159 (185)
Q Consensus 80 ~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~ 159 (185)
+++++++++|++||+.||++|++|+|+|+.+++.+|++.|+++. ++|+|..+|++.||.+.|||||+.+|+++|+.|++
T Consensus 391 ~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~-~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~ 469 (485)
T PF00118_consen 391 GKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN-NYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVE 469 (485)
T ss_dssp SHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT-TEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc-ccCcCccCCceeccccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987664 89999999999999999999999999999999999
Q ss_pred HHHHHHcHHHHHhcCC
Q psy6565 160 AAEMILRVDNIIKAAP 175 (185)
Q Consensus 160 ~a~~iL~iD~iI~~~~ 175 (185)
+|++||+||++|..+|
T Consensus 470 ~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 470 IASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998865
No 27
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.7e-41 Score=300.51 Aligned_cols=155 Identities=25% Similarity=0.368 Sum_probs=147.7
Q ss_pred CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhH
Q psy6565 18 GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLP 97 (185)
Q Consensus 18 ~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip 97 (185)
++++||+|||+|+.+++|++|+++||++++++++++ +||||||++|++++.+|.+++.. ++++|+++++|++||+.||
T Consensus 374 ~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~-g~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip 451 (545)
T PRK12852 374 GGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQE-GIVPGGGVALLRAKKAVGRINND-NADVQAGINIVLKALEAPI 451 (545)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999999999 69999999999999999999876 7889999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCCC
Q psy6565 98 TTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177 (185)
Q Consensus 98 ~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~~ 177 (185)
++|++|||+|+.+++.+|++.| ++++|+|..+|++.||.+.|||||+.+|.++|++|+++|++||+||++|..+|++
T Consensus 452 ~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 452 RQIAENAGVEGSIVVGKILENK---SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK 528 (545)
T ss_pred HHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Confidence 9999999999999999999877 3579999999999999999999999999999999999999999999999987754
No 28
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-40 Score=299.83 Aligned_cols=168 Identities=25% Similarity=0.398 Sum_probs=157.8
Q ss_pred eCCeeEEEEEcCCCC-----------------------------------ceEEEEecCCChhhHHHHHHHHHHHHHHHH
Q psy6565 4 IGEDTLLRFSGVPLG-----------------------------------EACTIVIRGATQQIIDEADRSLHDALCVLA 48 (185)
Q Consensus 4 ig~~~~~~~~~~~~~-----------------------------------~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~ 48 (185)
+.+++|++|++|.++ +++||+|||+|+.+++|++|+++||+++++
T Consensus 325 ~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k 404 (544)
T PRK12850 325 ITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATR 404 (544)
T ss_pred EEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHH
Confidence 345789999998874 389999999999999999999999999999
Q ss_pred HHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeE
Q psy6565 49 ATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGL 128 (185)
Q Consensus 49 ~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gi 128 (185)
+++++ +||||||++|++++..|+++ .+.++++++++++|++||+.||++|++|||+|+.+++.+|++.| .++|+
T Consensus 405 ~a~~~-g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~ 478 (544)
T PRK12850 405 AAVEE-GIVPGGGVALLRARSALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGF 478 (544)
T ss_pred HHHhc-CCccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcce
Confidence 99999 79999999999999999998 67889999999999999999999999999999999999998875 36899
Q ss_pred eCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCCC
Q psy6565 129 DMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177 (185)
Q Consensus 129 d~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~~ 177 (185)
|..+|++.||++.|||||+.+|.++|++|+++|++||+||++|..+|.+
T Consensus 479 d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (544)
T PRK12850 479 NAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKK 527 (544)
T ss_pred eCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Confidence 9999999999999999999999999999999999999999999988754
No 29
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-41 Score=299.68 Aligned_cols=174 Identities=38% Similarity=0.611 Sum_probs=162.6
Q ss_pred EeCCeeEEEEEcCCC--CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCc
Q psy6565 3 MIGEDTLLRFSGVPL--GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG 80 (185)
Q Consensus 3 ~ig~~~~~~~~~~~~--~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 80 (185)
++|++.+++|++|+. ++++||+|||+|+.+++|++|+++|||++++++++++++|||||++|++++.+|++++.+.++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g 420 (524)
T COG0459 341 KTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEG 420 (524)
T ss_pred eccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCc
Confidence 479999999999996 899999999999999999999999999999999999889999999999999999998444555
Q ss_pred -hHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcc-cccccCCccccHHHHHHHHHHHH
Q psy6565 81 -KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKV-GDMSQLGITESYVVKRQVLTSAS 158 (185)
Q Consensus 81 -~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~-~d~~~~gI~ep~~vk~~~l~~a~ 158 (185)
++|+++++|++||+.||++|++|||+|+.+++.+|++.|. .+.+|+|..++++ .||.+.|||||+.+|+++|++|+
T Consensus 421 ~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~ 498 (524)
T COG0459 421 GDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAA 498 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCccccchHhccCcChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 3458999999999 77999999999999999999999
Q ss_pred HHHHHHHcHHHHHhcCCCCC
Q psy6565 159 EAAEMILRVDNIIKAAPRKR 178 (185)
Q Consensus 159 ~~a~~iL~iD~iI~~~~~~~ 178 (185)
++|.+||++|++|...|++.
T Consensus 499 e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 499 EAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHHHHHHHhhccCCccc
Confidence 99999999999999988653
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=7.9e-40 Score=295.08 Aligned_cols=157 Identities=24% Similarity=0.369 Sum_probs=148.6
Q ss_pred CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhc--CCCchHHHHHHHHHHHhh
Q psy6565 17 LGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEAT--RTPGKEAVAMEAFARSLA 94 (185)
Q Consensus 17 ~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~--~~~~~~~l~~~~~a~aL~ 94 (185)
+++++||+|||+|+.+++|++|+++||++++++++++ +||||||++|++++.+|++++. +.++++++++++|++||+
T Consensus 385 ~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~-gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~ 463 (555)
T PTZ00114 385 SGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEE-GIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALR 463 (555)
T ss_pred CCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc-CcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999997 6999999999999999999875 578999999999999999
Q ss_pred hhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcC
Q psy6565 95 MLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAA 174 (185)
Q Consensus 95 ~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~ 174 (185)
.||++|++|||+|+.+++.+|++ .+++++|+|..+|++.||.+.|||||+.+|.++|++|+++|++||+||++|...
T Consensus 464 ~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~ 540 (555)
T PTZ00114 464 LPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDL 540 (555)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 99999999999999999999976 345679999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q psy6565 175 PRK 177 (185)
Q Consensus 175 ~~~ 177 (185)
|..
T Consensus 541 ~~~ 543 (555)
T PTZ00114 541 PKE 543 (555)
T ss_pred Ccc
Confidence 754
No 31
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.3e-39 Score=292.96 Aligned_cols=169 Identities=22% Similarity=0.365 Sum_probs=158.5
Q ss_pred EeCCeeEEEEEcCCCC-----------------------------------ceEEEEecCCChhhHHHHHHHHHHHHHHH
Q psy6565 3 MIGEDTLLRFSGVPLG-----------------------------------EACTIVIRGATQQIIDEADRSLHDALCVL 47 (185)
Q Consensus 3 ~ig~~~~~~~~~~~~~-----------------------------------~~~Ti~i~G~s~~~l~E~~r~i~dal~~~ 47 (185)
.++++++++|.+|..+ +++||+|||+|+.+++|++|+++||++++
T Consensus 324 ~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~ 403 (546)
T PRK14104 324 MIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHAT 403 (546)
T ss_pred EEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999875 89999999999999999999999999999
Q ss_pred HHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCcee
Q psy6565 48 AATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAG 127 (185)
Q Consensus 48 ~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~G 127 (185)
++++++ +||||||++|++++..|+++. ..++++++++++|++||+.||++|++|+|+|+.+++.+|++.| ..++|
T Consensus 404 ~~ai~~-g~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G 478 (546)
T PRK14104 404 RAAVEE-GIVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYG 478 (546)
T ss_pred HHHHHc-CcCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEe
Confidence 999999 699999999999999999884 4678999999999999999999999999999999999998754 34689
Q ss_pred EeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCC
Q psy6565 128 LDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPR 176 (185)
Q Consensus 128 id~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~ 176 (185)
+|..+|++.||++.|||||+.+|.++|++|+++|++||+||++|...|+
T Consensus 479 ~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~ 527 (546)
T PRK14104 479 FDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPK 527 (546)
T ss_pred EeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999998775
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1e-39 Score=292.44 Aligned_cols=163 Identities=26% Similarity=0.370 Sum_probs=154.6
Q ss_pred eCCeeEEEEEcCCCC-----------------------------------ceEEEEecCCChhhHHHHHHHHHHHHHHHH
Q psy6565 4 IGEDTLLRFSGVPLG-----------------------------------EACTIVIRGATQQIIDEADRSLHDALCVLA 48 (185)
Q Consensus 4 ig~~~~~~~~~~~~~-----------------------------------~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~ 48 (185)
+..++|++|.+|..+ +++||+|||+|+.+++|++|+++||+++++
T Consensus 322 ~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k 401 (520)
T cd03344 322 VTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATR 401 (520)
T ss_pred EeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 345789999998774 599999999999999999999999999999
Q ss_pred HHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeE
Q psy6565 49 ATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGL 128 (185)
Q Consensus 49 ~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gi 128 (185)
+++++ +||||||++|++++.+|++++. .++++++++++|++||+.||++|++|||+|+.+++.+|++.|. ++|+
T Consensus 402 ~a~~~-g~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~ 475 (520)
T cd03344 402 AAVEE-GIVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGY 475 (520)
T ss_pred HHHhc-CCCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeE
Confidence 99999 6999999999999999999987 8999999999999999999999999999999999999998764 6999
Q ss_pred eCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHh
Q psy6565 129 DMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIK 172 (185)
Q Consensus 129 d~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~ 172 (185)
|..+|++.||.+.|||||+.+|.++|++|+++|++||+||.+|.
T Consensus 476 d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 476 DAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred ECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 99999999999999999999999999999999999999999875
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=3.3e-39 Score=289.39 Aligned_cols=150 Identities=27% Similarity=0.426 Sum_probs=142.4
Q ss_pred eEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHH
Q psy6565 20 ACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTT 99 (185)
Q Consensus 20 ~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~ 99 (185)
++||+|||+|+.+++|++|+++||++++|+++++ +||||||++|++++.+|++ +.+.++++++++++|++||+.||++
T Consensus 374 ~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~-g~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~ 451 (524)
T TIGR02348 374 VAVIKVGAATETEMKEKKLRVEDALNATRAAVEE-GIVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQ 451 (524)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999 6999999999999999998 6778899999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCC
Q psy6565 100 IADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAP 175 (185)
Q Consensus 100 L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~ 175 (185)
|++|||+|+.+++.+|++. ++ ++|+|..+|++.||++.|||||+.+|.++|++|+++|++||+||++|...|
T Consensus 452 La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 452 IAENAGKDGAVVAEKVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred HHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 9999999999999999875 33 389999999999999999999999999999999999999999999998644
No 34
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3.4e-39 Score=289.58 Aligned_cols=153 Identities=24% Similarity=0.332 Sum_probs=145.4
Q ss_pred ceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhc-CCCchHHHHHHHHHHHhhhhH
Q psy6565 19 EACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEAT-RTPGKEAVAMEAFARSLAMLP 97 (185)
Q Consensus 19 ~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~-~~~~~~~l~~~~~a~aL~~ip 97 (185)
.++||+|||+|+.+++|++|+++||++++++++++ +||||||++|++++.+|++++. ..++++++++++|++||+.||
T Consensus 374 ~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip 452 (529)
T CHL00093 374 GVAVIKVGAATETEMKDKKLRLEDAINATKAAVEE-GIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPL 452 (529)
T ss_pred CeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc-CcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 48889999999999999999999999999999999 6999999999999999999976 789999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCC
Q psy6565 98 TTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPR 176 (185)
Q Consensus 98 ~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~ 176 (185)
++|++|||+|+.+++.+++.. +.++|+|..+|++.||++.|||||+.+|.++|+.|+++|++||+||++|...|+
T Consensus 453 ~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 453 KRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred HHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999753 347999999999999999999999999999999999999999999999998763
No 35
>KOG0357|consensus
Probab=100.00 E-value=1.3e-39 Score=270.10 Aligned_cols=173 Identities=36% Similarity=0.625 Sum_probs=163.6
Q ss_pred EeC--CeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCc
Q psy6565 3 MIG--EDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG 80 (185)
Q Consensus 3 ~ig--~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 80 (185)
++| .++++.++.|++++.+||.|||.|+.+++|.+|++|||||++|+.++|.++|+|||++|+.||-++.+.+..+++
T Consensus 222 sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g 301 (400)
T KOG0357|consen 222 SFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPG 301 (400)
T ss_pred ecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCc
Confidence 455 469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhC-CCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHH
Q psy6565 81 KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS-GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASE 159 (185)
Q Consensus 81 ~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~-~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~ 159 (185)
.+|+++++|++||++||-.|++|+|++|++.++++++.+.. .++.+|+|+.-..-.||++.+|+|++..|++.+..|++
T Consensus 302 ~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ 381 (400)
T KOG0357|consen 302 IEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQ 381 (400)
T ss_pred HHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999998854 56789999987777899999999999999999999999
Q ss_pred HHHHHHcHHHHHhcCC
Q psy6565 160 AAEMILRVDNIIKAAP 175 (185)
Q Consensus 160 ~a~~iL~iD~iI~~~~ 175 (185)
++.|||+||+|+....
T Consensus 382 ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 382 MVRMILKIDDVRKPGE 397 (400)
T ss_pred HHHHhhhccceecCCC
Confidence 9999999999998754
No 36
>KOG0364|consensus
Probab=100.00 E-value=7.3e-39 Score=272.81 Aligned_cols=174 Identities=32% Similarity=0.528 Sum_probs=169.2
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
+++|+++|+||..|++++.|||++||||+.+++|.+|.+.||+.+.|+.+-+|+.+||||++||.+|+.|.+.+....+.
T Consensus 349 kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GV 428 (527)
T KOG0364|consen 349 KKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGV 428 (527)
T ss_pred eccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccch
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
+++.+++++.||+.+|++|++|+|.+++..+..++..|..+...+|+|..+|.+.||.+.++|||+.+|.|..++|++.+
T Consensus 429 ekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa 508 (527)
T KOG0364|consen 429 EKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESA 508 (527)
T ss_pred hccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999988778899999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcCC
Q psy6565 162 EMILRVDNIIKAAP 175 (185)
Q Consensus 162 ~~iL~iD~iI~~~~ 175 (185)
+++||||++++..+
T Consensus 509 ~~LLRIddIvsg~k 522 (527)
T KOG0364|consen 509 CLLLRIDDIVSGKK 522 (527)
T ss_pred HHHHhhhceeeeee
Confidence 99999999998754
No 37
>KOG0358|consensus
Probab=100.00 E-value=4.2e-38 Score=264.93 Aligned_cols=169 Identities=34% Similarity=0.650 Sum_probs=164.9
Q ss_pred CCeeEEEEEcCCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHH
Q psy6565 5 GEDTLLRFSGVPL-GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEA 83 (185)
Q Consensus 5 g~~~~~~~~~~~~-~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~ 83 (185)
|+.+++.++|+.+ ++++||++||+++..++|.+|++|||||++||..+.+..+||||+.|+.++..|.+++.+..|.+.
T Consensus 364 G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~ 443 (534)
T KOG0358|consen 364 GEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEA 443 (534)
T ss_pred CCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchh
Confidence 7779999999998 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHH
Q psy6565 84 VAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEM 163 (185)
Q Consensus 84 l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~ 163 (185)
+++++|++|||.||.+|++|+|++|+.++++||+.|.+|..++|+|.+.|.+.|+.+..|+.|+.|-.++++.|+|++.+
T Consensus 444 yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ 523 (534)
T KOG0358|consen 444 YCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRS 523 (534)
T ss_pred HHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcHHHHHhc
Q psy6565 164 ILRVDNIIKA 173 (185)
Q Consensus 164 iL~iD~iI~~ 173 (185)
||+||+|+..
T Consensus 524 ILKIDDIv~a 533 (534)
T KOG0358|consen 524 ILKIDDIVNA 533 (534)
T ss_pred Hhhhhhhccc
Confidence 9999999864
No 38
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=282.17 Aligned_cols=155 Identities=23% Similarity=0.354 Sum_probs=142.2
Q ss_pred eEEEE-ecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHH-HHHHHHHHHhhhhH
Q psy6565 20 ACTIV-IRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEA-VAMEAFARSLAMLP 97 (185)
Q Consensus 20 ~~Ti~-i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-l~~~~~a~aL~~ip 97 (185)
.+|++ |||+|+.+++|++|+++||+++++++++++ +|||||++|++++.+|.+++....+++| .+++++++||+.||
T Consensus 429 ~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~ 507 (600)
T PLN03167 429 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPL 507 (600)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcch
Confidence 45555 999999999999999999999999999996 9999999999999999998877777766 55999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCCC
Q psy6565 98 TTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177 (185)
Q Consensus 98 ~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~~ 177 (185)
++|++|||+|+.+++.+|++. ++.++|+|..+|++.||.+.|||||+.+|+++|+.|+++|++||+||++|..+|..
T Consensus 508 r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~ 584 (600)
T PLN03167 508 KLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEP 584 (600)
T ss_pred hhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999753 34579999999999999999999999999999999999999999999999987644
Q ss_pred C
Q psy6565 178 R 178 (185)
Q Consensus 178 ~ 178 (185)
.
T Consensus 585 ~ 585 (600)
T PLN03167 585 E 585 (600)
T ss_pred C
Confidence 3
No 39
>KOG0359|consensus
Probab=100.00 E-value=3.4e-35 Score=250.17 Aligned_cols=172 Identities=27% Similarity=0.446 Sum_probs=166.0
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
.++|+++|+|+++|+++++|||+|+|||++.+.+.+.+++|+++++.+++++..++||+|++|.+++.+|+...++.+++
T Consensus 345 ~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgr 424 (520)
T KOG0359|consen 345 YTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGR 424 (520)
T ss_pred eeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCch
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a 161 (185)
.++++++|++||..+|++|++|+|+|..+.+.+|...|..+ .+|+|..+|+.++....||||.+.+|+++|++++-.|
T Consensus 425 a~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via 502 (520)
T KOG0359|consen 425 AYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIA 502 (520)
T ss_pred hhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCccchhhccccchHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999988765 4599999999999999999999999999999999999
Q ss_pred HHHHcHHHHHhcCC
Q psy6565 162 EMILRVDNIIKAAP 175 (185)
Q Consensus 162 ~~iL~iD~iI~~~~ 175 (185)
+.||-+|+|++++.
T Consensus 503 ~nlLlvDEi~rAG~ 516 (520)
T KOG0359|consen 503 TNLLLVDEIIRAGM 516 (520)
T ss_pred HHHHHHHHHHHccc
Confidence 99999999999864
No 40
>KOG0360|consensus
Probab=100.00 E-value=3.4e-35 Score=252.25 Aligned_cols=177 Identities=40% Similarity=0.583 Sum_probs=167.6
Q ss_pred EEeCCeeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCch
Q psy6565 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81 (185)
Q Consensus 2 ~~ig~~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~ 81 (185)
.+||++.++++.+.+.. .++|++||+|++.+||++|++|||+++++..++++++|||||++|.+|+.+|++|+.++..+
T Consensus 357 eri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~sr 435 (545)
T KOG0360|consen 357 ERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSR 435 (545)
T ss_pred HhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccH
Confidence 46899999999998876 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhC--------CCCceeEeCCCCcccccccCCccccHHHHHHH
Q psy6565 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS--------GKSTAGLDMDQGKVGDMSQLGITESYVVKRQV 153 (185)
Q Consensus 82 ~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~--------~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~ 153 (185)
+++++..|+.||.+||++|+-|++.|+.+++.++|+.|+. ...|+|+|..+|++.|.+++|++||..+|...
T Consensus 436 E~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvks 515 (545)
T KOG0360|consen 436 EQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKS 515 (545)
T ss_pred HHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhh
Confidence 9999999999999999999999999999999999999963 12489999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcHHHHHhcCCCCCC
Q psy6565 154 LTSASEAAEMILRVDNIIKAAPRKRT 179 (185)
Q Consensus 154 l~~a~~~a~~iL~iD~iI~~~~~~~~ 179 (185)
|+.|+|.+..+||||+.|.-.|+.+.
T Consensus 516 Lk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 516 LKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred hHHHHHhhhhhcchhhhhhcCccccc
Confidence 99999999999999999998876553
No 41
>KOG0362|consensus
Probab=100.00 E-value=2.2e-33 Score=242.22 Aligned_cols=178 Identities=33% Similarity=0.515 Sum_probs=165.0
Q ss_pred EEeCCeeEEEEEcC-CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCc
Q psy6565 2 VMIGEDTLLRFSGV-PLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG 80 (185)
Q Consensus 2 ~~ig~~~~~~~~~~-~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 80 (185)
+.||+..++.|.+. ...++.|+++||+++..+|+.||+++|+++..+...++++++||+|++|++|+..|.++...++|
T Consensus 348 ~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~G 427 (537)
T KOG0362|consen 348 QEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPG 427 (537)
T ss_pred eecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCC
Confidence 57899999999754 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCC-cccccccCCccccHHHHHHHHHHHHH
Q psy6565 81 KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQG-KVGDMSQLGITESYVVKRQVLTSASE 159 (185)
Q Consensus 81 ~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~-~~~d~~~~gI~ep~~vk~~~l~~a~~ 159 (185)
..|++++.|++||+.+|++|++|+|++..+++.+|.+.|. +....|+|+... ...|+.++||||-+..|.++|+.|++
T Consensus 428 l~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~-~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~ 506 (537)
T KOG0362|consen 428 LKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ-GGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATE 506 (537)
T ss_pred cchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-CCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 444588888755 48899999999999999999999999
Q ss_pred HHHHHHcHHHHHhcCCCCCCc
Q psy6565 160 AAEMILRVDNIIKAAPRKRTE 180 (185)
Q Consensus 160 ~a~~iL~iD~iI~~~~~~~~~ 180 (185)
+|.++|++|+||+.+|...+.
T Consensus 507 aa~tvl~vDqiimak~aggp~ 527 (537)
T KOG0362|consen 507 AALTVLTVDQIIMAKKAGGPK 527 (537)
T ss_pred hhheeeehhheeEecccCCCC
Confidence 999999999999998764433
No 42
>KOG0356|consensus
Probab=99.92 E-value=1.5e-24 Score=189.76 Aligned_cols=154 Identities=25% Similarity=0.390 Sum_probs=144.2
Q ss_pred CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhH
Q psy6565 18 GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLP 97 (185)
Q Consensus 18 ~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip 97 (185)
+++++|.|+|.|+.+++|++.+++||+++++.++++ |+|||||+++.+++..|.+....-+..++.+++++.+||..|.
T Consensus 388 ~gvavi~vGg~se~Ev~ekk~rv~dalnat~aavee-GivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~ 466 (550)
T KOG0356|consen 388 GGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEE-GIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPA 466 (550)
T ss_pred CCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhc-CcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhH
Confidence 479999999999999999999999999999999999 9999999999999999999876444567888999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcCCCC
Q psy6565 98 TTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177 (185)
Q Consensus 98 ~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~~~~ 177 (185)
.++++|||.|+..++.+++. ..+|+|..++++.||.+.||+||+.+.+.+|..|..+++++++++.+|...|++
T Consensus 467 ~~IakNAGvdg~~vv~Kv~~------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~ 540 (550)
T KOG0356|consen 467 QTIAKNAGVDGSVVVEKVLN------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKE 540 (550)
T ss_pred HHHHHhcCCchHHHHHHHHh------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEecccc
Confidence 99999999999999999982 168999999999999999999999999999999999999999999999998875
Q ss_pred C
Q psy6565 178 R 178 (185)
Q Consensus 178 ~ 178 (185)
.
T Consensus 541 ~ 541 (550)
T KOG0356|consen 541 E 541 (550)
T ss_pred c
Confidence 5
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=98.95 E-value=1.6e-09 Score=89.86 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=49.7
Q ss_pred EEeCC-----eeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcE
Q psy6565 2 VMIGE-----DTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRV 56 (185)
Q Consensus 2 ~~ig~-----~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~v 56 (185)
+++|+ ++|++|++|+.++++||+|||+|+.+++|.+|+++||+++++++..+..+
T Consensus 197 ~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~ 256 (261)
T cd03334 197 RTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSF 256 (261)
T ss_pred EEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46775 69999999999999999999999999999999999999999999777443
No 44
>KOG0230|consensus
Probab=75.21 E-value=2.6 Score=42.74 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=43.8
Q ss_pred eeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHH-hhcCcEeecCcH
Q psy6565 7 DTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAAT-VRETRVVYGGGC 62 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~~-l~~~~vvpGGG~ 62 (185)
+-+.||++|+.+..|||++||.+..++.+.++-+.-+.-+.=.. |+. .|+.--|+
T Consensus 520 KTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~-SflaDe~a 575 (1598)
T KOG0230|consen 520 KTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALET-SFLADEGA 575 (1598)
T ss_pred hhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhccCC
Confidence 34678999999999999999999999999999998887776555 444 55544443
No 45
>KOG2663|consensus
Probab=49.59 E-value=18 Score=30.15 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=25.6
Q ss_pred ceEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q psy6565 19 EACTIVIRGATQQIIDEADRSLHDALCVLAA 49 (185)
Q Consensus 19 ~~~Ti~i~G~s~~~l~E~~r~i~dal~~~~~ 49 (185)
.-.||+++| ++..+++.+|.|+|-.++.+-
T Consensus 119 srmTIVl~G-td~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 119 SRMTIVLQG-TDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred hhceEEEec-cHHHHHHHHHHHHHhhhhhee
Confidence 345999999 677999999999999999843
No 46
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=45.81 E-value=52 Score=25.17 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhHHHHHHhcCCCHHHH
Q psy6565 84 VAMEAFARSLAMLPTTIADNAGYDSAQL 111 (185)
Q Consensus 84 l~~~~~a~aL~~ip~~L~~NaG~d~~~~ 111 (185)
..++++.+.|+.+|-+|.+.+|+.|..+
T Consensus 101 ~~~Kav~q~LetlPD~LERd~gL~p~~v 128 (152)
T PF07278_consen 101 EMAKAVVQVLETLPDILERDAGLPPEQV 128 (152)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCCHHHH
Confidence 4688999999999999999999998664
No 47
>smart00574 POX domain associated with HOX domains.
Probab=40.62 E-value=64 Score=24.35 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhh
Q psy6565 32 IIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEA 75 (185)
Q Consensus 32 ~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~ 75 (185)
+++|++++.+--..-++..+..=-.|+|.|++-...+-+|+..+
T Consensus 85 mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~S 128 (140)
T smart00574 85 MLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTIS 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 44566655544444444443332337888887777666666443
No 48
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=36.49 E-value=30 Score=31.54 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcC
Q psy6565 37 DRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATR 77 (185)
Q Consensus 37 ~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~ 77 (185)
+|.+.+|+..+|++ +.|-+|.|||+-+-.....|..++..
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 46788999999886 55699999999888888888877653
No 49
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=32.77 E-value=65 Score=28.15 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=29.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhc-CcEeecCcHHHHHHH
Q psy6565 29 TQQIIDEADRSLHDALCVLAATVRE-TRVVYGGGCSEMLMA 68 (185)
Q Consensus 29 s~~~l~E~~r~i~dal~~~~~~l~~-~~vvpGGG~~e~~l~ 68 (185)
..++-.|+++.|+.--.++-++..+ ..+|.|.|++.+.-|
T Consensus 41 ~~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~A 81 (363)
T PF04864_consen 41 GWFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNA 81 (363)
T ss_dssp STTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHH
Confidence 3678889999999999999999766 478899999876544
No 50
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=32.24 E-value=1.7e+02 Score=23.39 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=12.9
Q ss_pred CcEeecCcHHHHHHHHHHhh
Q psy6565 54 TRVVYGGGCSEMLMAVAISN 73 (185)
Q Consensus 54 ~~vvpGGG~~e~~l~~~L~~ 73 (185)
--+|||||.|--.....=++
T Consensus 29 i~iVpGGg~FAd~VR~id~~ 48 (212)
T COG2054 29 ILIVPGGGIFADLVRKIDEE 48 (212)
T ss_pred EEEecCchHHHHHHHHHHHh
Confidence 47899999985544433333
No 51
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=31.44 E-value=1.7e+02 Score=21.94 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=35.1
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhh
Q psy6565 22 TIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISN 73 (185)
Q Consensus 22 Ti~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~ 73 (185)
=|+|.|+...+-++.-..-..-...++.+.++++.|.|=+.-.+.|.+.|.+
T Consensus 10 ~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d 61 (158)
T PF07685_consen 10 GIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIID 61 (158)
T ss_pred EEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhh
Confidence 4677777666655554444455566777788877777777777888888873
No 52
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=31.44 E-value=80 Score=22.64 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=27.5
Q ss_pred HHHHHHHH---HHHhhhhHHHHHHhcCCCHHHHHHHHH
Q psy6565 82 EAVAMEAF---ARSLAMLPTTIADNAGYDSAQLVSELR 116 (185)
Q Consensus 82 ~~l~~~~~---a~aL~~ip~~L~~NaG~d~~~~l~~l~ 116 (185)
.+-+++++ .++|.++|-..-+|-|.||.+++.=|.
T Consensus 33 ~qeAln~Vie~~eaFdsLPAkvRe~FgNdPeeml~~L~ 70 (114)
T TIGR02763 33 YQEALNIVIEGEEAFDSLPAKVRENFGNDPEEMLSWLE 70 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHh
Confidence 45555555 568999999999999999999887664
No 53
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=30.54 E-value=1.4e+02 Score=22.47 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=24.9
Q ss_pred hHHHHHHHH---HHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhh
Q psy6565 32 IIDEADRSL---HDALCVLAATVRETRVVYGGGCSEMLMAVAISNEA 75 (185)
Q Consensus 32 ~l~E~~r~i---~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~ 75 (185)
+++|.+++. ++=+..+-+.++. |.|.|++-...+-+|+-.+
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~---vaG~gaA~~YtalAlqamS 128 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEA---VAGLGAAAPYTALALQAMS 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCcchhhHHHHHHHHH
Confidence 455555554 5555555555555 7788887777666666544
No 54
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.39 E-value=80 Score=24.78 Aligned_cols=52 Identities=8% Similarity=0.254 Sum_probs=44.2
Q ss_pred EEEecCCChhhHHHHHHHHHH-HHHHHHHHhhcCcEeecCcHHHHHHHHHHhh
Q psy6565 22 TIVIRGATQQIIDEADRSLHD-ALCVLAATVRETRVVYGGGCSEMLMAVAISN 73 (185)
Q Consensus 22 Ti~i~G~s~~~l~E~~r~i~d-al~~~~~~l~~~~vvpGGG~~e~~l~~~L~~ 73 (185)
.|.|+|..+..+.|.+..++| +++.++..+.++-+|.-+.+.+..+...|+.
T Consensus 10 ~InVGgg~kV~MAdLka~~~dlGf~~v~T~iaSGNlvf~s~~~~~el~~klE~ 62 (178)
T COG3797 10 GVNVGGGRKVVMADLKAALTDLGFANVRTYIASGNLVFESEAGAAELEAKLEA 62 (178)
T ss_pred eeeecCCceEeHHHHHHHHHHcCcchhhHhhhcCCEEEEcCCChHHHHHHHHH
Confidence 578999999999999999977 5888999999988887777777777777775
No 55
>PF06760 DUF1221: Protein of unknown function (DUF1221); InterPro: IPR010632 This is a group of plant proteins, most of which are hypothetical and of unknown function. All members contain the IPR000719 from INTERPRO domain, suggesting that they may possess kinase activity.
Probab=30.09 E-value=2.7e+02 Score=22.29 Aligned_cols=68 Identities=10% Similarity=0.191 Sum_probs=45.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhcCc-------EeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhhhHHHHH
Q psy6565 29 TQQIIDEADRSLHDALCVLAATVRETR-------VVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIA 101 (185)
Q Consensus 29 s~~~l~E~~r~i~dal~~~~~~l~~~~-------vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~L~ 101 (185)
-+..+.|.-|.+.|+-..+|.+++... +--|--|+|.++.+.|. ++-++.+|+|. -.
T Consensus 45 LE~PLREl~rvfregE~YvR~CLd~k~WWaka~~~~~n~dcVE~hiHnlL~------------c~~vviEAIE~----Ag 108 (217)
T PF06760_consen 45 LEQPLRELHRVFREGEGYVRHCLDPKDWWAKAIALHQNTDCVEFHIHNLLW------------CFPVVIEAIET----AG 108 (217)
T ss_pred cchhHHHHHHHHhhhHHHHHHccCchhHHHHHHHHHcCcchHHHHHHHHHH------------HHHHHHHHHHH----Hh
Confidence 467899999999999999999985521 12334445555554443 33455555544 45
Q ss_pred HhcCCCHHHHH
Q psy6565 102 DNAGYDSAQLV 112 (185)
Q Consensus 102 ~NaG~d~~~~l 112 (185)
+.+|.|+.|+-
T Consensus 109 E~sG~D~dE~~ 119 (217)
T PF06760_consen 109 EISGSDQDEMA 119 (217)
T ss_pred hccCCCHHHHH
Confidence 77999998864
No 56
>KOG1336|consensus
Probab=29.04 E-value=1.1e+02 Score=27.70 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhcC-cEeecCcHHHHHHHHHHhhhhcCCC---chHHHHHHHHHHHhhhhHHHHHHhcCCC
Q psy6565 38 RSLHDALCVLAATVRET-RVVYGGGCSEMLMAVAISNEATRTP---GKEAVAMEAFARSLAMLPTTIADNAGYD 107 (185)
Q Consensus 38 r~i~dal~~~~~~l~~~-~vvpGGG~~e~~l~~~L~~~~~~~~---~~~~l~~~~~a~aL~~ip~~L~~NaG~d 107 (185)
|.+.||=.+++.+-..+ -++.|||..-++++..|.....+++ .+....-+.|...+.+--..+++|.|.+
T Consensus 198 reieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk 271 (478)
T KOG1336|consen 198 REIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVK 271 (478)
T ss_pred ccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeE
Confidence 55677777777665554 3568999999999999998765532 2333344466677766667788888864
No 57
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=28.86 E-value=94 Score=23.68 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHH
Q psy6565 79 PGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRA 117 (185)
Q Consensus 79 ~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~ 117 (185)
+|+...+.+++..||+.| .+-.|.||++++.+-..
T Consensus 32 ~GKK~~A~~Ivy~Af~ii----~~kTg~~Piqvf~~Ai~ 66 (148)
T COG0049 32 DGKKSLAEKIVYGAFDII----EKKTGQNPLQVFEKAIE 66 (148)
T ss_pred hccHHHHHHHHHHHHHHH----HHHHCCChHHHHHHHHH
Confidence 788999999999999875 45568999999877544
No 58
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=28.26 E-value=1.1e+02 Score=23.51 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=32.5
Q ss_pred eCCe-eEEEEEcCCCCceEEEE---ecCCChhhHHHHHHHHHHHHHHHHH
Q psy6565 4 IGED-TLLRFSGVPLGEACTIV---IRGATQQIIDEADRSLHDALCVLAA 49 (185)
Q Consensus 4 ig~~-~~~~~~~~~~~~~~Ti~---i~G~s~~~l~E~~r~i~dal~~~~~ 49 (185)
||.- .|+.|.|..+++.-+|+ |.-.-..-+.|+++++.||++.-+-
T Consensus 112 IGTPvD~iVFdGLs~G~i~~IvFvEVKtGkt~~LseREk~Vr~ai~~~rV 161 (175)
T COG4741 112 IGTPVDFIVFDGLSEGNIESIVFVEVKTGKTSSLSEREKAVRDAIENGRV 161 (175)
T ss_pred eCCCceEEEEcCCCcCceeEEEEEEEecCCcCCccHHHHHHHHHHhcCce
Confidence 4443 78999998887555544 4544444679999999999886553
No 59
>PTZ00091 40S ribosomal protein S5; Provisional
Probab=28.01 E-value=95 Score=24.75 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=27.9
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHH
Q psy6565 79 PGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRA 117 (185)
Q Consensus 79 ~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~ 117 (185)
+|+.+++.+++.+||+.|-. ..|.||++++.+-..
T Consensus 72 ~GKK~~A~~IV~~AfeiI~~----~t~~nPiqVl~~AI~ 106 (193)
T PTZ00091 72 NGKKLLAVRIVKHAFEIIHL----LTDKNPLQVLVDAVQ 106 (193)
T ss_pred CCcHHHHHHHHHHHHHHHHH----HHCCChHHHHHHHHH
Confidence 37899999999999998733 347899998876544
No 60
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.91 E-value=1.3e+02 Score=17.90 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhcCcE
Q psy6565 29 TQQIIDEADRSLHDALCVLAATVRETRV 56 (185)
Q Consensus 29 s~~~l~E~~r~i~dal~~~~~~l~~~~v 56 (185)
++.++|-.-|.++|+-+.+-.++..+|+
T Consensus 17 ~ESLLdrItRklr~gwKRl~~iLnQpGv 44 (45)
T PF02061_consen 17 SESLLDRITRKLRDGWKRLWDILNQPGV 44 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7899999999999999998888887664
No 61
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=27.56 E-value=51 Score=33.79 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=55.1
Q ss_pred EecCCChhhHHHHHHHHH-------HHHHHHHHH-hhcCcEeecCcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHhhh
Q psy6565 24 VIRGATQQIIDEADRSLH-------DALCVLAAT-VRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAM 95 (185)
Q Consensus 24 ~i~G~s~~~l~E~~r~i~-------dal~~~~~~-l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL~~ 95 (185)
+|.|.|+..++...+..+ +.+.-++.+ .+++++.-|++.+...+...|.+.-.+.+....-.+..+++++..
T Consensus 260 lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ 339 (1330)
T TIGR02969 260 VVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGT 339 (1330)
T ss_pred EEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHH
Confidence 567778876655443322 112222322 346689999999999999887765433344344567889999999
Q ss_pred hHHHHHHhcC
Q psy6565 96 LPTTIADNAG 105 (185)
Q Consensus 96 ip~~L~~NaG 105 (185)
+...-++|.|
T Consensus 340 ias~qIRN~g 349 (1330)
T TIGR02969 340 LAGSQIRNMA 349 (1330)
T ss_pred hCChhhcccc
Confidence 9999999975
No 62
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=27.24 E-value=1.8e+02 Score=18.94 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=26.6
Q ss_pred ecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHh
Q psy6565 25 IRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAIS 72 (185)
Q Consensus 25 i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~ 72 (185)
|.|.|+ +|.+..|.||+.. .+...+||=|...-.+.....
T Consensus 10 v~~~s~---~elk~~I~daI~s-----gEEk~LPGLGVlFE~~W~~~~ 49 (65)
T TIGR03092 10 ISNNTK---EQLEATIVDAIQS-----GEEKMLPGLGVLFEAIWKHAN 49 (65)
T ss_pred hcCCCH---HHHHHHHHHHHhc-----cchhcCCccHHHHHHHHHhcC
Confidence 456666 6667778887643 234899999996655555443
No 63
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=27.02 E-value=1.5e+02 Score=23.66 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=64.8
Q ss_pred cCcHHHHHHHHHHhhhhcCCCchHHHHHH-HHHHHhhhhHHHHHHhcCCCHHH----HHHHHHHHhh-CCCCceeEeCCC
Q psy6565 59 GGGCSEMLMAVAISNEATRTPGKEAVAME-AFARSLAMLPTTIADNAGYDSAQ----LVSELRAAHA-SGKSTAGLDMDQ 132 (185)
Q Consensus 59 GGG~~e~~l~~~L~~~~~~~~~~~~l~~~-~~a~aL~~ip~~L~~NaG~d~~~----~l~~l~~~~~-~~~~~~Gid~~~ 132 (185)
|.|+.--++..+|..+. ++ .++.++-.|-..=+.|.|+-+++ .+..|...-. +....+.||+.+
T Consensus 78 GcGSSRE~A~~al~~~G----------i~aVIA~SFa~IF~rN~~n~Gll~i~~~~~~i~~l~~~~~~~~g~~i~vDl~~ 147 (200)
T PRK01641 78 GCGSSREHAPWALADYG----------FRAVIAPSFADIFYNNCFKNGLLPIVLPEEDVDELFKLVEANPGAELTVDLEA 147 (200)
T ss_pred cCCCcHHHHHHHHHHcC----------CCEEEechHHHHHHHHHHHCCCCeEeeCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 55666666666666553 22 34666666666667777986543 3345554321 334568999998
Q ss_pred CcccccccCCccccHHHHHHHHHHHHHHHHHHHcHHHHHhcC
Q psy6565 133 GKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAA 174 (185)
Q Consensus 133 ~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~iL~iD~iI~~~ 174 (185)
+.+.+.-..--++.-...+.+|..-.+....+|+-.+-|..-
T Consensus 148 ~~v~~~~~~~~f~i~~~~~~~l~~G~D~i~~~l~~~~~I~~f 189 (200)
T PRK01641 148 QTVTAPDKTFPFEIDPFRRHCLLNGLDDIGLTLQHEDAIAAY 189 (200)
T ss_pred CEEecCCeEEEEEcCHHHHHHHHcCCCHHHHHHhCHHHHHHH
Confidence 887653222234433456677777788888887777666653
No 64
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic). This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.
Probab=26.36 E-value=1.2e+02 Score=24.01 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHH
Q psy6565 79 PGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRA 117 (185)
Q Consensus 79 ~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~ 117 (185)
+|+..++.++|.+||+.|-+ ..+.||++++.+-..
T Consensus 65 ~GKK~~A~kIv~~A~~iI~~----~t~~nPi~vl~~AI~ 99 (186)
T TIGR01028 65 NGKKLKAYRIVKEAFEIIEK----RTGENPIQVLVDAIE 99 (186)
T ss_pred CCcHHHHHHHHHHHHHHHHH----HhCCChHHHHHHHHH
Confidence 48899999999999998743 347899998876443
No 65
>PRK04027 30S ribosomal protein S7P; Reviewed
Probab=26.33 E-value=1.1e+02 Score=24.43 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHhcCCCHHHHHHHHHH
Q psy6565 79 PGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRA 117 (185)
Q Consensus 79 ~~~~~l~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~ 117 (185)
.|+.+++.+++.+||+.|- +-.|.||++++.+-..
T Consensus 74 ~GKK~~A~~Iv~~AfeiI~----~kT~~nPiqVl~~AI~ 108 (195)
T PRK04027 74 TGKKQKAYNIVKEAFEIIE----KRTKQNPIQVLVDAIE 108 (195)
T ss_pred CCcHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHH
Confidence 4899999999999999873 3347899998876543
No 66
>PF14850 Pro_dh-DNA_bdg: DNA-binding domain of Proline dehydrogenase; PDB: 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A 3ITG_B 3E2R_A 1TJ1_A 1TIW_A ....
Probab=25.83 E-value=63 Score=23.51 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHhhhhcCCCchHHHHHHHHHHHhhhhHHHHH
Q psy6565 69 VAISNEATRTPGKEAVAMEAFARSLAMLPTTIA 101 (185)
Q Consensus 69 ~~L~~~~~~~~~~~~l~~~~~a~aL~~ip~~L~ 101 (185)
..|++|+ ++..|-++.-.+|+||..||..--
T Consensus 5 ~ll~EY~--Lss~EGvaLMcLAEALLRVPD~~T 35 (114)
T PF14850_consen 5 ALLQEYS--LSSQEGVALMCLAEALLRVPDAAT 35 (114)
T ss_dssp HHHHCTT----HHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHHcCCCHHH
Confidence 3456664 677888999999999999986543
No 67
>PHA02694 hypothetical protein; Provisional
Probab=24.09 E-value=1.2e+02 Score=24.40 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHh
Q psy6565 60 GGCSEMLMAVAISNEATRTPGKEAVAMEAFARSL 93 (185)
Q Consensus 60 GG~~e~~l~~~L~~~~~~~~~~~~l~~~~~a~aL 93 (185)
||.+|...-..|++++.-++|.+-.+.+.++-||
T Consensus 122 ~g~~e~~ve~lleefsalcpgdqitalrcmaasf 155 (292)
T PHA02694 122 GGNAEKDVEQLLEEFSALCPGDQITALRCMAASF 155 (292)
T ss_pred CCchHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 6789999999999999888887777777776665
No 68
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=23.25 E-value=2.3e+02 Score=18.66 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=26.4
Q ss_pred EecCCChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHH
Q psy6565 24 VIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAI 71 (185)
Q Consensus 24 ~i~G~s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L 71 (185)
.|.|.|+ +|.+..|.||+.. .+...+||=|...=.+....
T Consensus 12 nv~g~s~---eel~~~I~daIqs-----gEEk~LPGLGVlFE~~W~~~ 51 (68)
T PRK02955 12 NVSGNSK---EELEGTIVDAIQS-----GEEKMLPGLGVLFEVIWKNA 51 (68)
T ss_pred HccCCCH---HHHHHHHHHHHhc-----cchhcCCcchhHHHHHHHhc
Confidence 3567776 5667778887643 23489999998655555443
No 69
>PF03135 CagE_TrbE_VirB: CagE, TrbE, VirB family, component of type IV transporter system; InterPro: IPR018145 This domain is found in (amongst others): the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration []. Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro []. Similar type IV transport systems are also found in other bacteria. This domain is also found in proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding
Probab=22.47 E-value=1.5e+02 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=22.3
Q ss_pred ceEEEEecCCChhhHHHHHHHHHHHHHH
Q psy6565 19 EACTIVIRGATQQIIDEADRSLHDALCV 46 (185)
Q Consensus 19 ~~~Ti~i~G~s~~~l~E~~r~i~dal~~ 46 (185)
.+.||+|.|.+...+++..+.+..+++.
T Consensus 149 ~~~~i~v~~~~~~~l~~~~~~v~~~l~~ 176 (205)
T PF03135_consen 149 YHFTIVVFADDPEELDDKVAEVSSALNN 176 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 5789999999998888777777666654
No 70
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.71 E-value=4.2e+02 Score=21.12 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcHHHHHHHHHHhhhhcCCCc--hHHHHHHHHHHHhhhhH---HHHHHhc
Q psy6565 30 QQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG--KEAVAMEAFARSLAMLP---TTIADNA 104 (185)
Q Consensus 30 ~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~~e~~l~~~L~~~~~~~~~--~~~l~~~~~a~aL~~ip---~~L~~Na 104 (185)
+..++|.+..+.+-++-++..+..+.-. -.+....+..|+++.....+ .-.-++..|+++|..+- +.|..|+
T Consensus 8 E~~~~~le~~l~kl~K~~k~~~~agk~~---~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~ 84 (200)
T cd07639 8 EAEVSELETRLEKLVKLGSGMLEGGRHY---CAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEAT 84 (200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777766553211 13666667778877653333 23456788888887773 4566675
Q ss_pred CC
Q psy6565 105 GY 106 (185)
Q Consensus 105 G~ 106 (185)
-.
T Consensus 85 ~~ 86 (200)
T cd07639 85 QF 86 (200)
T ss_pred HH
Confidence 43
No 71
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=21.46 E-value=1.3e+02 Score=21.08 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=37.0
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHhhCCCCceeEeCCCCcccccccCCccccHHHHHHHHHHHHHHHHH
Q psy6565 96 LPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEM 163 (185)
Q Consensus 96 ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~Gid~~~~~~~d~~~~gI~ep~~vk~~~l~~a~~~a~~ 163 (185)
+-..|..|.++.--.++.+|... +|||- .+-+....||||...-.+.+..++.-++.
T Consensus 30 fN~~L~~s~~frNP~i~ekLi~~-------~~Ide----~gTn~p~~i~dP~~~~~~~y~e~L~k~Qk 86 (96)
T PF07818_consen 30 FNDRLQNSKSFRNPSILEKLIEF-------FGIDE----YGTNFPKDIFDPHGFPEEDYYEELAKAQK 86 (96)
T ss_pred HHHHHHHccccCChHHHHHHHHH-------cCCCc----ccCCCChhhcCCCCCCHHHHHHHHHHHHH
Confidence 44556667777666667777664 56653 34455677899888777777766655543
No 72
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=21.40 E-value=6.6e+02 Score=23.29 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=54.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhcCcEeecCcH---HHHHHHHHHhhh--hcCCCchHHHHHHHHHHHhhh-hHHHHHH
Q psy6565 29 TQQIIDEADRSLHDALCVLAATVRETRVVYGGGC---SEMLMAVAISNE--ATRTPGKEAVAMEAFARSLAM-LPTTIAD 102 (185)
Q Consensus 29 s~~~l~E~~r~i~dal~~~~~~l~~~~vvpGGG~---~e~~l~~~L~~~--~~~~~~~~~l~~~~~a~aL~~-ip~~L~~ 102 (185)
-..+++|.+..+.+++.-....+++.|+..+... -++..+. ..+. +.+.+..---++..++.++.. =+.-|++
T Consensus 217 lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~-~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elle 295 (542)
T COG1111 217 LPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELR-QIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLE 295 (542)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHH-HHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999883 2222222 1222 122222222244455554433 3445778
Q ss_pred hcCCCHH-HHHHHHHHH
Q psy6565 103 NAGYDSA-QLVSELRAA 118 (185)
Q Consensus 103 NaG~d~~-~~l~~l~~~ 118 (185)
+.|.+++ .-+.++...
T Consensus 296 tqGi~~~~~Yl~~l~e~ 312 (542)
T COG1111 296 TQGIRPFYQYLEKLEEE 312 (542)
T ss_pred hhChHHHHHHHHHHHHH
Confidence 9999875 344455443
No 73
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=21.35 E-value=3.7e+02 Score=20.34 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCcEeecCcH
Q psy6565 34 DEADRSLHDALCVLAATVR--ETRVVYGGGC 62 (185)
Q Consensus 34 ~E~~r~i~dal~~~~~~l~--~~~vvpGGG~ 62 (185)
++--..+++.+......+. ..+++|||+-
T Consensus 82 ~~~v~~Le~~i~~~~~~~~~~~~Filpgg~~ 112 (163)
T PF01923_consen 82 EEDVQELEEEIDEYSEELPPLKGFILPGGSP 112 (163)
T ss_dssp HHHHHHHHHHHHHHHHHS-SESSCEES-SSH
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeEeCCCCH
Confidence 3333344444444443322 2378888865
No 74
>PF05908 DUF867: Protein of unknown function (DUF867); InterPro: IPR008585 This family consists of a number of bacterial and phage proteins with no known function and which are found in Bacillus species and the Lambda-like viruses.; PDB: 3A9L_A.
Probab=20.42 E-value=1.6e+02 Score=23.43 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCceEEEEecCCChhhHHHHHHHHHH
Q psy6565 7 DTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHD 42 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~Ti~i~G~s~~~l~E~~r~i~d 42 (185)
+..+-|.||.... -+++|+|......+....++.+
T Consensus 92 ~~~vsiHG~~~~~-~~v~vGG~d~~l~~~i~~~L~~ 126 (194)
T PF05908_consen 92 DYVVSIHGYKGDE-ETVYVGGRDRELREAIAEALEK 126 (194)
T ss_dssp SEEEEEEEE--SS---EEEESS-HHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCC-CEEEECCCCHHHHHHHHHHHHH
Confidence 4556688998755 7899999866555444444444
Done!