RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6565
(185 letters)
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 322 bits (827), Expect = e-109
Identities = 130/176 (73%), Positives = 155/176 (88%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+MIGED L+RFSGV GEACTIV+RGA+QQI+DEA+RSLHDALCVLA TV++TRVV GGG
Sbjct: 342 IMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGG 401
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
CSEMLMA A+ A +TPGK+++A+EAFA++L LPT IADNAGYDSA+LV++LRAAH +
Sbjct: 402 CSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYN 461
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177
G +TAGLDM +G VGDM +LGITES+ VKRQVL SASEAAEMILRVD+IIK APRK
Sbjct: 462 GNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPRK 517
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 306 bits (785), Expect = e-103
Identities = 117/178 (65%), Positives = 145/178 (81%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+MIGED L+RFSG GEACTIV+RGA+ I+DEA+RSLHDALCVL+ TV++TRVV GGG
Sbjct: 354 IMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGG 413
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
CSEMLMA A+ A + GK+++A+EAFA++L +PT IADN GYDSA+LVS+LRA H
Sbjct: 414 CSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYK 473
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRT 179
G TAG+DM++G VGDM +LGITESY VK L SA+EAAEMILRVD+II+ APR+R
Sbjct: 474 GNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQRE 531
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 283 bits (726), Expect = 1e-94
Identities = 122/177 (68%), Positives = 152/177 (85%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+MIGED LL+FSGV GEACTIV+RGATQQI+DEA+RSLHDALCVL+ TV+E+R V GGG
Sbjct: 342 IMIGEDKLLKFSGVKAGEACTIVLRGATQQILDEAERSLHDALCVLSQTVKESRTVLGGG 401
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
C+EMLM+ A+ EA PGK+A+A+EAFAR+L LPT +ADNAG+DS++LV++LRAAH +
Sbjct: 402 CAEMLMSKAVDTEAQNIPGKKALAVEAFARALRQLPTILADNAGFDSSELVAQLRAAHYN 461
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKR 178
G ST GLDM++G + DM QLGI ESY +KR V++SASEAAE++LRVDNIIKAAPR R
Sbjct: 462 GNSTMGLDMNEGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIKAAPRTR 518
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 217 bits (555), Expect = 2e-69
Identities = 76/171 (44%), Positives = 113/171 (66%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
IG++ G G+ TI++RGAT+ +DEA+RSLHDALC + A V + +V GGG
Sbjct: 294 TKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGG 353
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
+E+ ++ A+ A PGKE + +EAFA +L ++P T+A+NAG D ++V++LRA HA
Sbjct: 354 AAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAE 413
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIK 172
G AG D++ G++ DM + GI + VKRQ L SA+EAA +IL +D+II
Sbjct: 414 GGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 184 bits (469), Expect = 2e-56
Identities = 72/174 (41%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
IGED G G+ TI++RGAT +DE +R++ DAL + A +++ VV GGG
Sbjct: 309 REIGEDKTTFIEGCLSGKVATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGG 368
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
+E+ ++ A+ A GKE + +EAFA +L ++P T+A+NAG D +++++L+AAH
Sbjct: 369 AAELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKK 428
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAP 175
G + G+D D G++GDM + GI + VKR L SA E A +IL +D IIKA P
Sbjct: 429 GNN-LGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQIIKAKP 481
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 173 bits (440), Expect = 7e-52
Identities = 73/171 (42%), Positives = 110/171 (64%)
Query: 4 IGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCS 63
+G+D ++ G +A TI++RG T+ ++DE +R+L DAL V+A + + +VV GGG
Sbjct: 347 VGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAV 406
Query: 64 EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
E+ +A + A G+E +A+EAFA +L +P T+A+NAG D + ELRAAH G
Sbjct: 407 EIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGN 466
Query: 124 STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAA 174
AGLD+ G+V DM + G+ E VK+Q + SA+EAA MILR+D++I A
Sbjct: 467 KNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAAK 517
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 170 bits (433), Expect = 8e-51
Identities = 66/182 (36%), Positives = 105/182 (57%), Gaps = 6/182 (3%)
Query: 3 MIGEDTLLRFSGVPL--GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGG 60
G+ + + G TI++RGAT+ +DE +R + DAL V+ A V E ++V GG
Sbjct: 341 KTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGG 400
Query: 61 GCSEMLMAVAISNEATRTPG-KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAH 119
G +E+ A+ + A G E + +EAFAR+L P +A+NAG D +++S+LR+AH
Sbjct: 401 GAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAH 460
Query: 120 ASGKSTAGLDMDQGKVG-DMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKR 178
A + G+D G+ DM + GI + VKR L +A+EAA ++L +D+II A P ++
Sbjct: 461 A--TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518
Query: 179 TE 180
Sbjct: 519 KP 520
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 159 bits (405), Expect = 8e-47
Identities = 71/170 (41%), Positives = 112/170 (65%)
Query: 4 IGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCS 63
+GED ++ G +A TI++RG T+ ++DE +RSL DAL V+A+ + + +VV GGG
Sbjct: 350 VGEDKMVFVEGCKNPKAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAV 409
Query: 64 EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
E+ +A+ + + A + G+E +A+EAFA +L +P +A+NAG D + ELRA H G
Sbjct: 410 EIEIALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGN 469
Query: 124 STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
AG+++ G++ DM +LG+ E VK Q + SA+EAA MILR+D++I A
Sbjct: 470 KNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA 519
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 151 bits (384), Expect = 9e-44
Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 1/167 (0%)
Query: 7 DTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEML 66
D +L G P +A TI IRG + II+EA RSLHDALCV+ +R+ R+VYGGG +E+
Sbjct: 360 DKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEIS 419
Query: 67 MAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAH-ASGKST 125
++A+ A + G E AM AFA +L +P +A+N+G + + +SE++A
Sbjct: 420 CSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPH 479
Query: 126 AGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIK 172
G+D DM + + E+ + K+Q + A++ +MIL++D++I
Sbjct: 480 LGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 146 bits (370), Expect = 8e-42
Identities = 60/163 (36%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 12 FSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAI 71
F+G P + CTI++RG +Q I+EA+RSLHDA+ ++ ++ VV GGG EM ++ +
Sbjct: 357 FTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 416
Query: 72 SNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKST-AGLDM 130
+ + GK+ + + AFA++L ++P + DNAG+D+ ++++LR HA G G+D+
Sbjct: 417 RDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDI 476
Query: 131 DQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
+ + D + + E +VK LT+A+EAA +IL VD IK
Sbjct: 477 NNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKN 519
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 143 bits (362), Expect = 8e-41
Identities = 62/171 (36%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
IG++ + +ACTI++RGA++ +++E +R+L DA+ V + ++V GGG
Sbjct: 308 KKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGG 367
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
+EM ++ A+S +A G E +A A +L ++P T+A N G + + ++ELRA HA
Sbjct: 368 ATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQ 427
Query: 122 -GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNII 171
ST G+D + G + DM +LGI + VK Q +A EAA M+LR+D+I+
Sbjct: 428 GENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIV 478
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 143 bits (363), Expect = 8e-41
Identities = 59/162 (36%), Positives = 103/162 (63%)
Query: 12 FSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAI 71
F+G P + CTI++RG +Q I+EA+RSLHDA+ ++ ++ ++V GGG EM ++ +
Sbjct: 359 FTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCL 418
Query: 72 SNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMD 131
+ + GK+ + + AFA++L ++P + +NAG+DS +++++LR+AHA G G+D++
Sbjct: 419 RDYSKTIDGKQQLIINAFAKALEVIPRQLCENAGFDSIEILNKLRSAHAKGGKWYGVDIN 478
Query: 132 QGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
+GD + + E +VK L +A+EAA IL VD I
Sbjct: 479 TEDIGDNFENFVWEPALVKINALKAATEAACTILSVDETITN 520
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 141 bits (357), Expect = 4e-40
Identities = 59/158 (37%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 18 GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATR 77
+ TIV+RGATQ I+D+ +R++ D + V + ++ R V G G +E+ +A + +
Sbjct: 314 SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373
Query: 78 TPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQG--KV 135
TPG E A++ FA + ++P T+A+NAG D+ +++SEL AAH G +AG+D++ G
Sbjct: 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGT 433
Query: 136 GDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
D + GI + K+ + A+EAA +LRVD II A
Sbjct: 434 KDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 141 bits (357), Expect = 6e-40
Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 8/180 (4%)
Query: 4 IGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCS 63
IG+D L+ G + +I++RGA ++DE +RSLHDALCV+ T+ VV GGG
Sbjct: 348 IGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAV 407
Query: 64 EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
E +++ + N AT +E +A+ FA +L ++P T+A NA D+ +LV++LRA HA+ +
Sbjct: 408 ETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQ 467
Query: 124 STA--------GLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAP 175
GLD+ GKV D + G+ E V K + L A+EAA ILR+D++IK P
Sbjct: 468 VKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 141 bits (357), Expect = 6e-40
Identities = 60/171 (35%), Positives = 110/171 (64%), Gaps = 1/171 (0%)
Query: 2 VMIGEDTLLRFSGVP-LGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGG 60
V +G+ +++ +GV G+ TI++RG+ + ++DEA+RSLHDALCV+ V++ ++ GG
Sbjct: 343 VSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGG 402
Query: 61 GCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHA 120
G E+ +A+ +S A G E + AFA +L ++P T+A+NAG + +V+ELR HA
Sbjct: 403 GAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHA 462
Query: 121 SGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNII 171
G+ AG+++ +G + ++ + + + +V +T A+E MIL++D+I+
Sbjct: 463 QGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 135 bits (342), Expect = 8e-38
Identities = 61/174 (35%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 2 VMIGEDTLLRFSGVP-LGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGG 60
V +++ +G+ G+ T+V+RG+ + +IDEA+RSLHDALCV+ V++ ++ GG
Sbjct: 344 VDSDGGKIIKITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGG 403
Query: 61 GCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHA 120
G E+ +A +S A G E+ + AFA +L ++P T+A+NAG + ++V+ELR HA
Sbjct: 404 GAPEIEIARRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIKVVTELRNRHA 463
Query: 121 SGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAA 174
+G+ TAG+ + +G + +M + + + +V +T ASE IL++D+I+
Sbjct: 464 NGEKTAGISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDDIVFTR 517
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 134 bits (340), Expect = 2e-37
Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 8/182 (4%)
Query: 4 IGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCS 63
I +D + G + +I++RGA ++DE +RSLHDALCV+ T+ VV GGG
Sbjct: 352 IADDECILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAV 411
Query: 64 EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
E +++ + N AT +E +A+ FA +L ++P T+A NA DS +LV++LRA HA+ +
Sbjct: 412 EAALSIYLENFATTLGSREQLAIAEFAEALLIIPKTLAVNAAKDSTELVAKLRAYHAAAQ 471
Query: 124 STA--------GLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAP 175
GLD+ GK+ D + G+ E V K + L A+EAA ILR+D++IK P
Sbjct: 472 LKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNP 531
Query: 176 RK 177
+
Sbjct: 532 EQ 533
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 133 bits (337), Expect = 4e-37
Identities = 57/155 (36%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 19 EACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRT 78
+A TI IRG + II+EA RS+HDALCV+ ++++R+VYGGG +E+ ++A+S EA +
Sbjct: 376 KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAVSQEADKY 435
Query: 79 PGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTA-GLDMDQGKVGD 137
G E A+ AFA +L +P +A+N+G D +S L++ K+ G+D D
Sbjct: 436 SGVEQYAIRAFADALETIPMALAENSGLDPIGTLSTLKSLQLKEKNPNIGVDCLGYGTND 495
Query: 138 MSQLGITESYVVKRQVLTSASEAAEMILRVDNIIK 172
M + + E+ + K+Q + A++ MIL++D++I
Sbjct: 496 MKEQFVFETLIGKKQQILLATQLVRMILKIDDVIS 530
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 131 bits (331), Expect = 3e-36
Identities = 61/176 (34%), Positives = 107/176 (60%), Gaps = 1/176 (0%)
Query: 3 MIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGC 62
IG++ F+ +ACTI++RGA++ +++E +R+L DA+ V + E +++ GGG
Sbjct: 350 KIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGA 409
Query: 63 SEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG 122
+EM ++V ++ +A++ G + A A +L ++P T+A N G + + ++ELRA HA
Sbjct: 410 TEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQE 469
Query: 123 -KSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177
T G+D + GK+ DM + GI E VK Q +A E+A M+LR+D+I+ +K
Sbjct: 470 GNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKKK 525
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 125 bits (317), Expect = 3e-34
Identities = 54/156 (34%), Positives = 99/156 (63%), Gaps = 2/156 (1%)
Query: 22 TIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81
TI++RG+T+ ++D+ +R++ D + V+ A V++ R + G G +E+ +A ++ A +TPG
Sbjct: 366 TIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKYAEKTPGL 425
Query: 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVG--DMS 139
+ A++ FA + ++P T+A+NAG + +++ +L AAH G ++ G+D++ G D S
Sbjct: 426 DQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSKGIDIEAESDGVKDAS 485
Query: 140 QLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAP 175
+ GI + K+ + A+EAA +LRVD II A P
Sbjct: 486 EAGIYDMLATKKFAIKLATEAAVTVLRVDQIIMAKP 521
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 99.3 bits (248), Expect = 1e-24
Identities = 54/172 (31%), Positives = 92/172 (53%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+GE+ GV ++CTI+I+G I + ++ D L + + + VV G G
Sbjct: 311 RTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAG 370
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
E+ + + GK + ++AFA +L ++P T+A+N+G D + + +L+ +A
Sbjct: 371 AFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAE 430
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
G G+D+D G+ D GI ++Y VKRQ+L SA+ A +L VD II+A
Sbjct: 431 GGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRA 482
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 97.9 bits (244), Expect = 4e-24
Identities = 46/159 (28%), Positives = 83/159 (52%)
Query: 20 ACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTP 79
+CTI+I+G I + ++ D L + + + VV G G E+ +
Sbjct: 372 SCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKENKKSVK 431
Query: 80 GKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMS 139
GK + +EAFA +L ++P T+A+N+G+D+ + +L H G G+D++ G+ D
Sbjct: 432 GKAKLGVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGGEVVGVDLNTGEPIDPE 491
Query: 140 QLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKR 178
GI ++Y VK+Q++ SA+ A +L VD +++A
Sbjct: 492 IKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSML 530
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 70.6 bits (174), Expect = 2e-15
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRE 53
IGE+ L G G+A TI++RGAT+ +DE RSLHDALC + A V E
Sbjct: 158 TKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 52.8 bits (127), Expect = 2e-08
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
Query: 24 VIR--GATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81
VIR +T+ + E + DAL A V E +V GGG + + A+ T G
Sbjct: 378 VIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETAN-GD 435
Query: 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQL 141
+ +E R+L IA+NAG + + +V +LR G + + GD+
Sbjct: 436 QRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLR----EKPGGYGFNAATNEYGDLYAQ 491
Query: 142 GITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
G+ + V R L +A+ A ++L + ++ P+K
Sbjct: 492 GVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAP 531
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 47.8 bits (114), Expect = 8e-07
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 24 VIR--GATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGK 81
VIR GAT+ + E + DAL A V E +V GGG + +L A +
Sbjct: 378 VIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVA-LLRARSALRGLKGANAD 435
Query: 82 EAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQL 141
E ++ R+L IA NAG++ + +V ++ A G + G+ GDM +
Sbjct: 436 ETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKV----AELPGNFGFNAQTGEYGDMVEA 491
Query: 142 GITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177
GI + V R L A+ A +++ + ++ AP+K
Sbjct: 492 GIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKK 527
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 46.1 bits (110), Expect = 4e-06
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 18 GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGC-----SEMLMAVAIS 72
G I + GA++ ++E + DAL A V E +V GGG S++L +
Sbjct: 386 GGVAVIKVGGASEVEVNEKKDRIEDALNATRAAV-EEGIVPGGGVALLRASKLLDKLEED 444
Query: 73 NEAT--RTPGKEAVAMEAFARSLAMLPT-TIADNAGYDSAQLVSELRAAHASGKSTAGLD 129
NE T + G + V R+ LPT IA+NAG + A +V ++ + G D
Sbjct: 445 NELTPDQRTGVKIV------RNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYD 495
Query: 130 MDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMIL 165
G+ +M + GI + V R L A+ A ++L
Sbjct: 496 AQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLML 531
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 44.8 bits (106), Expect = 9e-06
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 18 GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATR 77
G I + GAT+ + E + DAL A V+E +V GGG + + A+
Sbjct: 374 GGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND 432
Query: 78 TPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKS-TAGLDMDQGKVG 136
+A + ++L IA+NAG + + +V ++ KS T G D +
Sbjct: 433 NADVQA-GINIVLKALEAPIRQIAENAGVEGSIVVGKIL----ENKSETFGFDAQTEEYV 487
Query: 137 DMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177
DM GI + V R L A+ A +++ + ++ P+K
Sbjct: 488 DMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK 528
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 43.6 bits (104), Expect = 2e-05
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 24 VIR--GATQ-QIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPG 80
VI+ GAT+ ++ ++ DR + DAL A V E +V GGG + + + A+
Sbjct: 375 VIKVGGATEVELKEKKDR-VEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKALNGD 432
Query: 81 KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQ 140
E + +E R+L IA+NAG D + +V ++ G D G+ DM +
Sbjct: 433 -EKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLE----SPDGFGYDAATGEYVDMIE 487
Query: 141 LGITESYVVKRQVLTSASEAAEMIL 165
GI + V R L +A+ A ++L
Sbjct: 488 AGIIDPTKVVRSALQNAASVASLLL 512
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 40.8 bits (95), Expect = 2e-04
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 18 GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG-----CSEMLMAVAIS 72
G I + GAT+ + E + DA+ A V E +V GGG SE L +
Sbjct: 374 GGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIKTK 432
Query: 73 NEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQ 132
N+ +T +E ++L+ IA NAG D + +V ++ + + G D
Sbjct: 433 NDDQKT------GVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQT 483
Query: 133 GKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRT 179
G+ G++ GI + V R + +A+ A +++ + ++ P+K
Sbjct: 484 GEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGG 530
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 39.8 bits (94), Expect = 4e-04
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 42 DALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIA 101
DAL A V E +V GGG +L A +E G +A +E R+L IA
Sbjct: 397 DALNATRAAVEEG-IVPGGG-VALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIA 454
Query: 102 DNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161
+NAG D + +V+++ + G + G+ GD+ GI + V R L +A+ A
Sbjct: 455 ENAGLDGSVVVAKVL----ELEDGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVA 510
Query: 162 EMIL 165
++L
Sbjct: 511 GLLL 514
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 38.0 bits (89), Expect = 0.002
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 23 IVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKE 82
I + AT+ + E + DAL A V E +V GGG + +L A A E
Sbjct: 377 IKVGAATETEMKEKKLRIEDALNATRAAVEEG-IVPGGGVA-LLRAAAALEGLKGDGEDE 434
Query: 83 AVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLG 142
A+ ++ R+L IA+NAG D A + +++ K G + G+ D+ + G
Sbjct: 435 AIGIDIVKRALEAPLRQIAENAGLDGAVVAEKVKE----LKGNFGFNAATGEYEDLVEAG 490
Query: 143 ITESYVVKRQVLTSASEAAEMILRVDNIIKAAP 175
I + V R L +A+ A ++L + ++ P
Sbjct: 491 IIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 37.0 bits (86), Expect = 0.004
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 24 VIR--GATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEA-TRTPG 80
VI+ AT+ + + L DA+ A V E +V GGG + + ++ + A
Sbjct: 377 VIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKE 435
Query: 81 KEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQ 140
E + AR++ IA+NAG + + ++ +++ G + K +M +
Sbjct: 436 DELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQDFE----IGYNAANNKFVNMYE 491
Query: 141 LGITESYVVKRQVLTSASEAAEMILRVDNII 171
GI + V R L +A+ A MIL + II
Sbjct: 492 AGIIDPAKVTRSALQNAASIASMILTTECII 522
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 36.1 bits (83), Expect = 0.007
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 18 GEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISN-EAT 76
G I + T+ + E + DAL A V E VV GGGC+ + +A + + T
Sbjct: 428 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVV-GGGCTLLRLASKVDAIKDT 486
Query: 77 RTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVG 136
++ V + R+L+ IA NAG + + + ++ ++ G + GK
Sbjct: 487 LENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVL---SNDNPKFGYNAATGKYE 543
Query: 137 DMSQLGITESYVVKRQVLTSASEAAEMILRVDNII 171
D+ GI + V R L A+ A+ L D ++
Sbjct: 544 DLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVV 578
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 33.9 bits (79), Expect = 0.032
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 19/131 (14%)
Query: 42 DALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAV-------AMEAFARSLA 94
DAL A V E +V GGG + +L A G EA A+EA R
Sbjct: 397 DALHATRAAVEEG-IVPGGGVA-LLRAAPALEALKGLNGDEATGINIVLRALEAPLR--- 451
Query: 95 MLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVL 154
IA+NAG + + +V +++ G G + G+ DM + GI + V R L
Sbjct: 452 ----QIAENAGLEGSVVVEKVKNGKGKGY---GYNAATGEYVDMIEAGIIDPTKVTRSAL 504
Query: 155 TSASEAAEMIL 165
+A+ A ++L
Sbjct: 505 QNAASVAGLLL 515
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 32.6 bits (75), Expect = 0.086
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 8 TLLRFSG--VPLGEACTIVIRGATQQIIDEADRSLHDALCVLAA 49
TL+ F G LG CTI++RG + + + R + V AA
Sbjct: 208 TLMFFEGCPKELG--CTILLRGGDLEELKKVKRVVE--FMVFAA 247
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 28.7 bits (64), Expect = 1.9
Identities = 14/44 (31%), Positives = 16/44 (36%)
Query: 121 SGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMI 164
G + G QG V D +Q GI E YV E I
Sbjct: 292 YGITNFGFQFSQGWVADFNQNGINEIYVYFFWKGGVRLFMIEFI 335
>gnl|CDD|182152 PRK09932, PRK09932, glycerate kinase II; Provisional.
Length = 381
Score = 26.8 bits (59), Expect = 7.7
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 26 RGATQQIIDEADRSLHD-ALCVLAATVRE-TRVVYGGGCSEMLMAVAISNEATRTPGKEA 83
+GAT ++++E ++ L + A + T ++ GG M +A A+ A PG E
Sbjct: 212 KGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEI 271
Query: 84 V 84
V
Sbjct: 272 V 272
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.130 0.356
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,031,625
Number of extensions: 821930
Number of successful extensions: 774
Number of sequences better than 10.0: 1
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 54
Length of query: 185
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 94
Effective length of database: 6,901,388
Effective search space: 648730472
Effective search space used: 648730472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)