RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6565
(185 letters)
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 266 bits (683), Expect = 4e-88
Identities = 106/180 (58%), Positives = 141/180 (78%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+M+GE L+FSG GEACTIV+RGAT Q +DEA+RSLHDAL VL+ T +ETR V GGG
Sbjct: 346 IMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGG 405
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
C+EM+M+ A+ EA GK+++A+EAFAR+L LPT +ADNAG+DS++LVS+LR++ +
Sbjct: 406 CAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYN 465
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
G ST+GLD++ G + DM QLGI ESY +KR V++SASEAAE++LRVDNII+A PR
Sbjct: 466 GISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQ 525
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 264 bits (677), Expect = 2e-87
Identities = 135/175 (77%), Positives = 158/175 (90%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
VMIGED L+ FSGV LGEACTIV+RGATQQI+DEA+RSLHDALCVLA TV+++R VYGGG
Sbjct: 339 VMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGG 398
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
CSEMLMA A++ A+RTPGKEAVAME++A++L MLPT IADNAGYDSA LV++LRAAH+
Sbjct: 399 CSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSE 458
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPR 176
GK+TAGLDM +G +GDMS LGITES+ VKRQVL SA+EAAE+ILRVDNIIKAAPR
Sbjct: 459 GKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 259 bits (663), Expect = 7e-85
Identities = 56/180 (31%), Positives = 103/180 (57%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+ IG + F G P + CT+++RG +Q+I E +RSLHDA+ ++ ++ +V GGG
Sbjct: 355 MQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGG 414
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
+EM ++ + + + GK+ + + AFA++L ++P + +NAG+D+ +++++LR AH+
Sbjct: 415 ATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSK 474
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
G+ G+ + +GD + E +VK L SA+EA +IL VD I +
Sbjct: 475 GEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESANA 534
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 255 bits (654), Expect = 7e-84
Identities = 60/172 (34%), Positives = 105/172 (61%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
IG + F+G P + CTI++RG +Q ++E +RSLHDA+ ++ ++ VV GGG
Sbjct: 342 TQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGG 401
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
EM ++ + + + PGK+ + + A+A++L ++P + DNAG+D+ ++++LRA HA
Sbjct: 402 AIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQ 461
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
G G+D++ + D + + E +V+ LT+ASEAA +I+ VD IK
Sbjct: 462 GGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKN 513
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 253 bits (650), Expect = 6e-83
Identities = 60/180 (33%), Positives = 109/180 (60%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
V +GED + +G +A +I++RG T+ ++DE +RS+ D+L V+A+ + + GGG
Sbjct: 351 VKVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGG 410
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
+ +A + + A + G++ +A+E FA ++ +P +A+NAG D ++ +LRA HA
Sbjct: 411 ATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAK 470
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
G T G+++ G++ DM + G+ E V +Q + SA+EAA MILR+D++I + +
Sbjct: 471 GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSN 530
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 252 bits (646), Expect = 9e-83
Identities = 56/183 (30%), Positives = 102/183 (55%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+ + +G +A T+++ G T+ ++D D +L+DAL V+ + + +VV GGG
Sbjct: 304 KEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGG 363
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
SE+ +++ +S A+ G+E +A+ FA +L ++P +A+NAG D ++ ELR+ H
Sbjct: 364 SSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEK 423
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
G AGL++ G+V DM + + E +K Q + +A EA MILR+D+++ +
Sbjct: 424 GNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQGM 483
Query: 182 RGH 184
Sbjct: 484 GPG 486
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 254 bits (650), Expect = 9e-83
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+D + G + +I++RGA +DE +RSLHD+L V+ T+ VV GGG
Sbjct: 364 AKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGG 423
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
C E + + + N AT +E +A+ FA +L ++P T+A NA DS++LV++LR+ HA+
Sbjct: 424 CVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAA 483
Query: 122 GKS------------TAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDN 169
+ GLD+ +GK+ D G+ E + K + L SA EA ILR+D
Sbjct: 484 SQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDT 543
Query: 170 IIKAAPRKRTED 181
+I P ED
Sbjct: 544 MITVDPEPPKED 555
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 252 bits (646), Expect = 2e-82
Identities = 59/184 (32%), Positives = 109/184 (59%), Gaps = 1/184 (0%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+GED ++ G ++ +I+IRG ++++DE +R+L DAL +A +++ R + GGG
Sbjct: 360 RKVGEDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGG 419
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
E+ +A + A + GKE +A+EA+A +L L + + +NAG+D L+ +LR+ H +
Sbjct: 420 AVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHEN 479
Query: 122 -GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTE 180
G+D+ G+ DM Q G+ E +VK + +A+EAA ++LR+D+++ A + E
Sbjct: 480 ENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGE 539
Query: 181 DRGH 184
+
Sbjct: 540 SKTP 543
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 251 bits (643), Expect = 5e-82
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 8/182 (4%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
I +D L+ + ++++RGA + DE +RSLHDALCV+ + VV GGG
Sbjct: 348 ERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 407
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
E +++ + N AT +E +A+ FARSL ++P T+A NA DS LV++LRA H
Sbjct: 408 AVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNE 467
Query: 122 GKS--------TAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
+ GLD+ GK D Q G+ E +VK + L A+EAA ILR+D++IK
Sbjct: 468 AQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 527
Query: 174 AP 175
P
Sbjct: 528 HP 529
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 250 bits (642), Expect = 9e-82
Identities = 64/182 (35%), Positives = 107/182 (58%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
IG+D + G +A +I+IRG T ++ E +R+L+DA+ V+A T + + ++GGG
Sbjct: 350 RKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGG 409
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
E +A+ ++ A G+E +A+EAFA++L ++P T+A+NAG D + +L+A
Sbjct: 410 AVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEK 469
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
G+ + G+D+D VGDM G+ + VK L SA E A MILR+D++I +
Sbjct: 470 GRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPSG 529
Query: 182 RG 183
+G
Sbjct: 530 QG 531
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 250 bits (640), Expect = 2e-81
Identities = 67/183 (36%), Positives = 115/183 (62%), Gaps = 1/183 (0%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
I D+++ +A T++IRG T+ +I+E R++ DA+ V+ T+ + R+V GGG
Sbjct: 346 RKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGG 405
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
+E+ +++ + A G+E +A+ AFA +L ++P T+A+NAG D+ +++ ++RAAHAS
Sbjct: 406 STEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHAS 465
Query: 122 -GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTE 180
G AGL++ G V DM + G+ E VK Q + SA+E+ EM+LR+D++I A +
Sbjct: 466 NGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAP 525
Query: 181 DRG 183
D G
Sbjct: 526 DMG 528
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 249 bits (637), Expect = 9e-81
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 2 VMIG--EDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYG 59
G +D +L + T +RG+ + I+DEA+R+LHD+LCV+ V+++RVVYG
Sbjct: 383 QEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYG 442
Query: 60 GGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAH 119
GG +E+ M++A+S EA + G + A FA++L +P T+A+N+G D +S L++
Sbjct: 443 GGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQ 502
Query: 120 ASGK-STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177
K S G+D DM +L + + ++ K+Q + A++ MIL++DN+I + +
Sbjct: 503 LKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKDE 561
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 245 bits (629), Expect = 5e-80
Identities = 61/175 (34%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Query: 2 VMIGEDTLLRFSGVPLGEA---CTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVY 58
+ ++R +G+ A ++VIRGA IIDE +RSLHDALCV+ V+E ++
Sbjct: 353 IDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIA 412
Query: 59 GGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAA 118
GGG E+ ++ +S EA G +A + FA +L ++PTT+A+NAG +S ++V+ELR+
Sbjct: 413 GGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSK 472
Query: 119 HASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
H +G+ G+ + + + + I + +V +T ASE + ILR+D+I +
Sbjct: 473 HENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFS 527
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 244 bits (626), Expect = 1e-79
Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 1/175 (0%)
Query: 1 MVMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGG 60
+D +L A TI IRG + II+EA RSLHDALCV+ +R+ RVVYGG
Sbjct: 341 SFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGG 400
Query: 61 GCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHA 120
G +E+ A+A+S EA + P E AM AFA +L ++P +A+N+G + Q ++E+RA
Sbjct: 401 GAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQV 460
Query: 121 SG-KSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAA 174
G+D DM + E+ + K+Q ++ A++ MIL++D+I K
Sbjct: 461 KEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKPG 515
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 241 bits (617), Expect = 2e-78
Identities = 55/171 (32%), Positives = 106/171 (61%), Gaps = 1/171 (0%)
Query: 4 IGEDTLLRFSGVP-LGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGC 62
G L++ +G G+ TIV+RG+ + +I+EA+RS+HDALCV+ V++ ++ GGG
Sbjct: 347 NGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGA 406
Query: 63 SEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG 122
E+ +A+ ++ + G E+ + AFA ++ ++P+T+A+NAG + V+ELR HA G
Sbjct: 407 PEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQG 466
Query: 123 KSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
+ T G+++ +G + ++ + + + +V LT A+E IL++D+++
Sbjct: 467 EKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNT 517
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 237 bits (606), Expect = 2e-76
Identities = 66/183 (36%), Positives = 111/183 (60%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+ + ++ G +A TI+IRG T+ +IDE +R+L DA+ V+ + + V+ GG
Sbjct: 353 RKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGG 412
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
E+ +A+ + A + GKEA+A+E FA +L ++P T+A+NAG D+ +++ ++ + H +
Sbjct: 413 APEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN 472
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRTED 181
G+D+ +GK DM + GI E VK+Q + SASEAA MILR+D++I A K
Sbjct: 473 RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEGG 532
Query: 182 RGH 184
+G
Sbjct: 533 QGG 535
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 217 bits (554), Expect = 7e-69
Identities = 45/173 (26%), Positives = 90/173 (52%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
+GE+ + T++I+G + + + ++ D L + + + VV G G
Sbjct: 345 YTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAG 404
Query: 62 CSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHAS 121
E+ MA A+ G+ + ++AFA +L ++P +A N+G+D + + +++A H+
Sbjct: 405 AVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSE 464
Query: 122 GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAA 174
G+D++ G+ ++ GI ++Y VK+Q+L S + A IL VD I++A
Sbjct: 465 SGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAG 517
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 206 bits (528), Expect = 4e-65
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 1/171 (0%)
Query: 4 IGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCS 63
IG++ + +ACTI++RGA+++I+ E +R+L DA+ V + + ++V GGG S
Sbjct: 343 IGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 402
Query: 64 EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
EM +A A++ ++ G E A A++L ++P T+ N G + +L++ LRA H
Sbjct: 403 EMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQEN 462
Query: 124 -STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
T G++ + G + DM +LGI E VK Q +A E A ++LR+D+I+
Sbjct: 463 CETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSG 513
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 206 bits (526), Expect = 2e-64
Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 2 VMIGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGG 61
IGE+ + ++CTI+I+G+T + + ++ D L +A +++ ++ G G
Sbjct: 357 ETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAG 416
Query: 62 CSEMLMAVAISNEATRTP---GKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAA 118
+ ++ + + GK +EAFA +L ++P T+ N+G+D +++ +
Sbjct: 417 AFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDE 476
Query: 119 HAS-----GKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
G+D++ G D + GI +SY V R +T A+ A +L D +++A
Sbjct: 477 LDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRA 536
Query: 174 APRKRTED 181
E
Sbjct: 537 GRSTLKET 544
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 203 bits (519), Expect = 9e-64
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 3/173 (1%)
Query: 4 IGEDTLLRFSGVP-LGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGC 62
+G+ ++ F G TIV+RG+T ++D+ +R++ D + R+ R+V GGG
Sbjct: 339 VGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGA 398
Query: 63 SEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASG 122
+E+ +A I++ PG E A++ FA + +P +A+N+G + +++S+L A H G
Sbjct: 399 TEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEG 458
Query: 123 KSTAGLDMDQG--KVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKA 173
GLD++ V DM + G+ ++Y+ K + A+ AA +LRVD II A
Sbjct: 459 NKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMA 511
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 192 bits (491), Expect = 3e-59
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 4 IGED--TLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRE--TRVVYG 59
IG D T+ + + TI++RGATQ +D+ +R++ D + + ++ +++ G
Sbjct: 363 IGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPG 422
Query: 60 GGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAH 119
G +E+ + I+ RTPG +A++ FA + ++P T+A+ AG D +++ L AAH
Sbjct: 423 AGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAH 482
Query: 120 ASGKSTA--------GLDMD---QGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVD 168
+ A G+D+D V D+ + I + K+ + A+EAA +L +D
Sbjct: 483 NVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSID 542
Query: 169 NIIKAAP 175
II A
Sbjct: 543 QIIMAKK 549
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 172 bits (439), Expect = 2e-51
Identities = 62/174 (35%), Positives = 104/174 (59%)
Query: 4 IGEDTLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCS 63
+G G+ACTI++RG ++ I++E DR+L DA+ V + + GGG +
Sbjct: 416 LGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGAT 475
Query: 64 EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
EM ++V ++ +A + G + +A A ++ +P T+ NAG D +L+S+LRA HA G
Sbjct: 476 EMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGN 535
Query: 124 STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRK 177
T G+D D+GK+ DM GI E V+K+Q + +A E+A ++LRVD+I+ ++
Sbjct: 536 FTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQ 589
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 45.2 bits (108), Expect = 4e-06
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 42 DALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIA 101
DAL A V E +V GGG + + A+ + G EA + R+L IA
Sbjct: 396 DALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIA 454
Query: 102 DNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161
+NAGY+ + +V ++ + G + G+ DM + GI + V R L +A+
Sbjct: 455 ENAGYEGSVIVQQIL--AETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIG 512
Query: 162 EMILRVDNIIKAAPRK 177
+IL + ++ P K
Sbjct: 513 ALILTTEAVVAEKPEK 528
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 42.9 bits (102), Expect = 2e-05
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 42 DALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIA 101
DA+ A V E +V GGG + L+ A + + + G EA +L IA
Sbjct: 396 DAVRNAKAAVEEG-IVAGGGVT--LLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIA 452
Query: 102 DNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161
N+G + + ++R + + GL+ G D+ G+ + V R L +A+ A
Sbjct: 453 FNSGLEPGVVAEKVR----NLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIA 508
Query: 162 EMILRVDNIIKAAPRK 177
+ L + ++ P K
Sbjct: 509 GLFLTTEAVVADKPEK 524
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 42.9 bits (102), Expect = 2e-05
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 42 DALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIA 101
DAL A V E VV GGG + ++ + + + V ++ R++ I
Sbjct: 397 DALHATRAAVEEG-VVAGGGVA-LIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIV 454
Query: 102 DNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161
N G + + + + ++ G G + + G+M +GI + V R L A+ A
Sbjct: 455 LNCGEEPSVVANTVK----GGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVA 510
Query: 162 EMILRVDNIIKAAPRK 177
+++ + ++ P+
Sbjct: 511 GLMITTECMVTDLPKN 526
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 42.2 bits (100), Expect = 4e-05
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 42 DALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIA 101
DAL A V+E +V GGG + ++ + + + + R+L IA
Sbjct: 398 DALNATRAAVQEG-IVVGGGVA-LVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIA 455
Query: 102 DNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAA 161
+NAG D A + ++R S G + + GDM + G+ + V R L A+ A
Sbjct: 456 ENAGVDGAVVAGKVRE---SSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVA 512
Query: 162 EMILRVDNIIKAAPRK 177
+++ + +I P
Sbjct: 513 GLLITTEAMIAEKPEP 528
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 35.6 bits (83), Expect = 0.004
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 4 IGEDTLLRFSGVPLGEACTIVIRGATQQIIDE 35
IG++ + +ACTI++RGA+
Sbjct: 147 IGDEYFTFITDCKDPKACTILLRGASHHHHHH 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.009
Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 40/145 (27%)
Query: 12 FSGVPLGEACTIVI---RGATQQIIDEADRSLHD---------------ALCVLAATVRE 53
F V G A + I +G T +E R L+ L L T +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 54 TRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEAFARSLAMLP----------TTIADN 103
V+ G + ++ + N + TP K+ + + P A
Sbjct: 205 AEKVFTQGLN--ILEW-LENPSN-TPDKDYLLSIPIS-----CPLIGVIQLAHYVVTAKL 255
Query: 104 AGYDSAQLVSELRAA--HASGKSTA 126
G+ +L S L+ A H+ G TA
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTA 280
Score = 33.5 bits (76), Expect = 0.035
Identities = 29/210 (13%), Positives = 51/210 (24%), Gaps = 69/210 (32%)
Query: 28 ATQQIIDEADRSLHDALCV-LAATVRE---TRVVYGGGCS-----EMLMAVAISNEATRT 78
A Q + + AD D + V ++ GG E A+
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 79 PGKEAVAMEAFARS-----------L--------AMLPTTIA-------------DN--A 104
E + E S L A+ A D A
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 105 G-----YDSAQLVSE---------LRAAHASGKSTAG-LDMDQGKVGDMSQLGITESYVV 149
G Y +A L S + G + + D+ + + I V
Sbjct: 1761 GHSLGEY-AA-LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 150 K-------RQVLTSASEAAEMILRV--DNI 170
+ V+ + ++ + N+
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 26.2 bits (58), Expect = 6.7
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 123 KSTAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAPRKRT 179
TA L+ D+ + D LG+T Y L + ++ ++N KR
Sbjct: 209 APTADLEDDRPSLPDEVALGVT--YDNIDDYLEGKNVPQQVARTIENWYLKTEHKRR 263
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.356
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,689,337
Number of extensions: 158416
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 42
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)