RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6565
(185 letters)
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 112 bits (280), Expect = 1e-31
Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Query: 5 GEDTLLRFSGVPLGEACTIVIRGA-TQQIIDEADRSLHDALCVLAATVRETRVVYGGGCS 63
G T + +G L +A ++ + I + + +A V+ + GGG +
Sbjct: 75 GTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGAT 134
Query: 64 EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
+A + + A + G++ +A+E FA ++ +P +A+NAG D ++ +LRA HA G
Sbjct: 135 AAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGN 194
Query: 124 STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNII 171
T G+++ G++ DM + G+ E V +Q + SA+EAA MILR+D++I
Sbjct: 195 KTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 110 bits (275), Expect = 1e-30
Identities = 55/164 (33%), Positives = 91/164 (55%)
Query: 8 TLLRFSGVPLGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLM 67
T + SG L +A T++ +G +I R + + + E ++GGG E +
Sbjct: 82 TAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAEL 141
Query: 68 AVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAG 127
A+ ++ A G+E +A+EAFA++L ++P T+A+NAG D + +L+A G+ + G
Sbjct: 142 AMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVG 201
Query: 128 LDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMILRVDNII 171
+D+D VGDM G+ + VK L SA E A MILR+D++I
Sbjct: 202 VDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 86.4 bits (213), Expect = 2e-21
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 1/145 (0%)
Query: 29 TQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEATRTPGKEAVAMEA 88
I + A +L V+ GG E+ +A+ + A + GKEA+A+E
Sbjct: 113 PSIITKGYALAAEKAQEILDEIAIR-AVLPAGGAPEIELAIRLDEYAKQVGGKEALAIEN 171
Query: 89 FARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMSQLGITESYV 148
FA +L ++P T+A+NAG D+ +++ ++ + H + G+D+ +GK DM + GI E
Sbjct: 172 FADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLR 231
Query: 149 VKRQVLTSASEAAEMILRVDNIIKA 173
VK+Q + SASEAA MILR+D++I A
Sbjct: 232 VKKQAIKSASEAAIMILRIDDVIAA 256
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 67.2 bits (163), Expect = 2e-14
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 3/159 (1%)
Query: 18 GEACTIVIRGA-TQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEAT 76
E V GA + ++++ A+ + A +V GGG + + A+
Sbjct: 99 REGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIK 158
Query: 77 RTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVG 136
+ G EA + R+L IA+NAGY+ + +V ++ + G + G+
Sbjct: 159 KLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQIL--AETKNPRYGFNAATGEFV 216
Query: 137 DMSQLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAP 175
DM + GI + V R L +A+ +IL + ++ P
Sbjct: 217 DMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP 255
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 44.8 bits (105), Expect = 1e-06
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 80 GKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVGDMS 139
+ + R+L IA+NAG D A + S G + + GDM
Sbjct: 160 SDQDAGIAIIRRALEAPMRQIAENAGVDGAVVA---GKVRESSDKAFGFNAQTEEYGDMF 216
Query: 140 QLGITESYVVKRQVLTSASEAAEMILRVDNIIKAAP 175
+ G+ + V R L A+ A +++ + +I P
Sbjct: 217 KFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 252
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 43.6 bits (102), Expect = 2e-06
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 64 EMLMAVAISNEATRTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGK 123
L+ A + + + G EA +L IA N+G + + ++R +
Sbjct: 80 VTLLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVR----NLP 135
Query: 124 STAGLDMDQGKVGDMSQLGITESYVVKRQVLTSASEAAEMIL 165
+ GL+ G D+ G+ + V R L +A+ A + L
Sbjct: 136 AGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFL 177
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 34.3 bits (78), Expect = 0.003
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 3 MIGEDTLLRFSGVPLGEACTIVIRG 27
IG++ + +ACTI++RG
Sbjct: 144 KIGDEYFTFITDCKDPKACTILLRG 168
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 29.0 bits (64), Expect = 0.32
Identities = 26/155 (16%), Positives = 60/155 (38%), Gaps = 6/155 (3%)
Query: 17 LGEACTIVIRGATQQIIDEADRSLHDALCVLAATVRETRVVYGGGCSEMLMAVAISNEAT 76
+ E V G + + + V VV GGG + + +A +++
Sbjct: 99 ITEGLKAVAAGMNPMDL-KRGIDKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRG 157
Query: 77 RTPGKEAVAMEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKSTAGLDMDQGKVG 136
+ + V ++ R++ I N G + + + + ++ G G + + G
Sbjct: 158 QN-ADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVK----GGDGNYGYNAATEEYG 212
Query: 137 DMSQLGITESYVVKRQVLTSASEAAEMILRVDNII 171
+M +GI + V R L A+ A +++ + ++
Sbjct: 213 NMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 247
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 102
Score = 25.4 bits (56), Expect = 2.4
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 5 GEDTLLRFSGVPLGE 19
G RF+G PLG
Sbjct: 71 GSQQGPRFAGSPLGH 85
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 25.2 bits (55), Expect = 3.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 5 GEDTLLRFSGVPLGE 19
G+D +R+ G+P G
Sbjct: 88 GKDFGVRYFGLPAGH 102
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 25.6 bits (55), Expect = 4.8
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 86 MEAFARSLAMLPTTIADNAGYDSAQLVSELRAAHASGKS 124
M+ + + T I + GY++A ++ R A+ +G+S
Sbjct: 394 MKEYVEKSIGIITAINPHVGYETAAKLA--REAYLTGES 430
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.356
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,231
Number of extensions: 23634
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 11
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)