BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6566
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
MNEVVHTSPTIGSNVEE++ N F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 43 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RIS+T+EELYKML HEDL KA +LI+ANKQD+K M+ EIS L LTSIK QWHIQ+C
Sbjct: 103 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162
Query: 121 CALTGE 126
CALTGE
Sbjct: 163 CALTGE 168
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
MNEVVHTSPTIGSNVEE++ N F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 44 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RIS+T+EELYKML HEDL KA +LI+ANKQD+K M+ EIS L LTSIK QWHIQ+C
Sbjct: 104 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 163
Query: 121 CALTGE 126
CALTGE
Sbjct: 164 CALTGE 169
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
MNEVVHTSPTIGSNVEE++ N F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RIS+T+EELYKML HEDL KA +LI+ANKQD+K M+ EIS L LTSIK QWHIQ+C
Sbjct: 98 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157
Query: 121 CALTGE 126
CALTGE
Sbjct: 158 CALTGE 163
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
MNEVVHTSPTIGSNVEE++ N F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RIS+T+EELYKML HEDL KA +LI+ANKQD+K M+ EIS L LTSIK QWHIQ+C
Sbjct: 98 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157
Query: 121 CALTGE 126
CALTGE
Sbjct: 158 CALTGE 163
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 206 bits (523), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 111/126 (88%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
MNEVVHTSPTIGSNVEE++ KN HF+MWD+GGQ+SLR++W+TYY+NTEF+ILV+DS DRE
Sbjct: 38 MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 97
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R+++TKEELY+ML HEDL KAAVLI+ANKQD+K M+ EIS L L+SIK WHIQSC
Sbjct: 98 RLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSC 157
Query: 121 CALTGE 126
CALTGE
Sbjct: 158 CALTGE 163
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 142 bits (359), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 90/126 (71%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EVV T PTIG NVE V ++NI F +WD+GGQ +R W YY+NT+ +I V+DS DRE
Sbjct: 39 LGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRE 98
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI +EEL++M+N E+L A +L++ANKQD+ N+MS E++ L L +I+++ W IQS
Sbjct: 99 RIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQST 158
Query: 121 CALTGE 126
CA G+
Sbjct: 159 CATRGD 164
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DR+
Sbjct: 42 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 101
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R+ ++EL++MLN ++L A +L++ANKQD+ N+M+ EI++ L L S++++ W+IQS
Sbjct: 102 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 161
Query: 121 CALTGE 126
CA +GE
Sbjct: 162 CATSGE 167
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 86/126 (68%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EV+ T PTIG NVE V +KNI F +WD+GGQ +R+ W YY NTE VI V+DS DR
Sbjct: 39 LGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRS 98
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI +E + +MLN ++L AA L++ANKQD+ +MS EI+ L L SI+ + W IQ+
Sbjct: 99 RIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT 158
Query: 121 CALTGE 126
CA +GE
Sbjct: 159 CATSGE 164
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 86/126 (68%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EV+ T PTIG NVE V +KNI F +WD+GGQ +R+ W YY NTE VI V+DS DR
Sbjct: 22 LGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRS 81
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI +E + +MLN ++L AA L++ANKQD+ +MS EI+ L L SI+ + W IQ+
Sbjct: 82 RIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT 141
Query: 121 CALTGE 126
CA +GE
Sbjct: 142 CATSGE 147
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EV+ T PTIG NVE V +KNI F +WD+GGQ +R+ W YY NTE VI VIDS DR
Sbjct: 39 LGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRS 98
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI +E + +MLN ++L A L++ANKQD+ +MS EI+ L L SI+ + W IQS
Sbjct: 99 RIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQST 158
Query: 121 CALTGE 126
CA +GE
Sbjct: 159 CATSGE 164
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 88/125 (70%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EVV T PTIG NVE V +KN+ F +WDLGGQ S+R W YY+NT+ VI V+DS DR+
Sbjct: 24 VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRD 83
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++K EL ML E+L KA ++++ANKQD++ +M+P E++N L L ++K ++W I
Sbjct: 84 RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKT 143
Query: 121 CALTG 125
A G
Sbjct: 144 SATKG 148
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 38 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 97
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R++ +EEL +ML ++L A +L++ANKQD+ N+M+ EI++ L L S++ + W+IQ+
Sbjct: 98 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 157
Query: 121 CALTGE 126
CA +G+
Sbjct: 158 CATSGD 163
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 98
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R++ +EEL +ML ++L A +L++ANKQD+ N+M+ EI++ L L S++ + W+IQ+
Sbjct: 99 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 158
Query: 121 CALTGE 126
CA +G+
Sbjct: 159 CATSGD 164
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 22 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R++ +EEL +ML ++L A +L++ANKQD+ N+M+ EI++ L L S++ + W+IQ+
Sbjct: 82 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 141
Query: 121 CALTGE 126
CA +G+
Sbjct: 142 CATSGD 147
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 135 bits (341), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 187 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 246
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R++ +EEL +ML ++L A +L++ANKQD+ N+M+ EI++ L L S++ + W+IQ+
Sbjct: 247 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 306
Query: 121 CALTGE 126
CA +G+
Sbjct: 307 CATSGD 312
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EV+ T PTIG NVE V + NI F +WD+GGQ +R+ W YY NTE VI V+DS DR
Sbjct: 39 LGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRS 98
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI +E + +MLN ++L AA L++ANKQD+ +MS EI+ L L SI+ + W IQ+
Sbjct: 99 RIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT 158
Query: 121 CALTGE 126
CA +GE
Sbjct: 159 CATSGE 164
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 89/126 (70%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GG +R W Y+ NT+ +I V+DS DRE
Sbjct: 24 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRE 83
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R++ +EEL +ML ++L A +L++ANKQD+ N+M+ EI++ L L S++ + W+IQ+
Sbjct: 84 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 143
Query: 121 CALTGE 126
CA +G+
Sbjct: 144 CATSGD 149
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 86/126 (68%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W YY NT+ +I V+DS DR+
Sbjct: 39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRD 98
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI +EEL KMLN +++ A +L++ANK D+ +MS E++ L L +IK ++W+ Q+
Sbjct: 99 RIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTS 158
Query: 121 CALTGE 126
CA G+
Sbjct: 159 CATNGD 164
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GGQ +R W YYT T+ +I V+D DR+
Sbjct: 22 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 81
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 82 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 141
Query: 121 CALTGE 126
CA +G+
Sbjct: 142 CATSGD 147
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GGQ +R W YYT T+ +I V+D DR+
Sbjct: 34 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 93
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 94 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 153
Query: 121 CALTGE 126
CA +G+
Sbjct: 154 CATSGD 159
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GGQ +R W YYT T+ +I V+D DR+
Sbjct: 35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 94
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 95 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 154
Query: 121 CALTGE 126
CA +G+
Sbjct: 155 CATSGD 160
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GGQ +R W YYT T+ +I V+D DR+
Sbjct: 22 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 81
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 82 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 141
Query: 121 CALTGE 126
CA +G+
Sbjct: 142 CATSGD 147
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 86/125 (68%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EVV T PTIG NVE V +KN+ F +WDLGG S+R W YY+NT+ VI V+DS DR+
Sbjct: 26 VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 85
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++K EL ML E+L KA ++++ANKQD++ +M+ E++N L L ++K ++W I
Sbjct: 86 RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 145
Query: 121 CALTG 125
A G
Sbjct: 146 SATKG 150
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 129 bits (324), Expect = 4e-31, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GGQ +R W YYT T+ +I V+D DR+
Sbjct: 344 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 403
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 404 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 463
Query: 121 CALTGE 126
CA +G+
Sbjct: 464 CATSGD 469
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 128 bits (321), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 85/125 (68%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 51 LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 110
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R+ + +EL KML ++L A +L++ANKQD+ N+M E+++ L L ++ + W++Q+
Sbjct: 111 RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 170
Query: 121 CALTG 125
CA G
Sbjct: 171 CATQG 175
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 39 LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRE 98
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI +EL KML ++L A +L++ANKQD+ N+M+ E+++ L L S++ + W++Q+
Sbjct: 99 RIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQAT 158
Query: 121 CALTG 125
CA G
Sbjct: 159 CATQG 163
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GG +R W YYT T+ +I V+D DR+
Sbjct: 35 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD 94
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 95 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 154
Query: 121 CALTGE 126
CA +G+
Sbjct: 155 CATSGD 160
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GG +R W YYT T+ +I V+D DR+
Sbjct: 25 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD 84
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 85 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 144
Query: 121 CALTGE 126
CA +G+
Sbjct: 145 CATSGD 150
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GG +R W YYT T+ +I V+D DR+
Sbjct: 24 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD 83
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 84 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 143
Query: 121 CALTGE 126
CA +G+
Sbjct: 144 CATSGD 149
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 83/126 (65%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GGQ +R W YYT T+ +I V+D DR+
Sbjct: 22 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 81
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N + A +LI+ANKQD+ ++ P EI L LT I+ + W++Q
Sbjct: 82 RIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPS 141
Query: 121 CALTGE 126
CA +G+
Sbjct: 142 CATSGD 147
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 84/126 (66%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EVV T PTIG NVE + +KN+ +WDLGGQ S+R W YY +T VI V+DSTD++
Sbjct: 40 IGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD 99
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R+S +EL+ ML E+L AA+L++ANKQD ++S E+S L+L +K + W I +
Sbjct: 100 RMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159
Query: 121 CALTGE 126
A+ GE
Sbjct: 160 SAIKGE 165
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EVV T PTIG NVE V +KN+ F +WDLGG S+R W YY+NT+ VI V+DS DR+
Sbjct: 29 VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++K EL L E+L KA ++++ANKQD + + + E +N L L ++K ++W I
Sbjct: 89 RIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLGLPALKDRKWQIFKT 148
Query: 121 CALTG 125
A G
Sbjct: 149 SATKG 153
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 79/124 (63%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
+V SPT+G N++ + + +WD+GGQ+SLR+ W Y+ +T+ +I V+DS DR+R+
Sbjct: 42 DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRM 101
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
+ EL +L E L+ A +LI+ANKQD+ ++S I L+L SI+ W IQ C A
Sbjct: 102 QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSA 161
Query: 123 LTGE 126
+TGE
Sbjct: 162 VTGE 165
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 79/124 (63%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
+V SPT+G N++ + + +WD+GGQ+SLR+ W Y+ +T+ +I V+DS DR+R+
Sbjct: 42 DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRM 101
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
+ EL +L E L+ A +LI+ANKQD+ ++S I L+L SI+ W IQ C A
Sbjct: 102 QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161
Query: 123 LTGE 126
+TGE
Sbjct: 162 VTGE 165
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 78/119 (65%)
Query: 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE 67
SPT+G N++ + + +WD+GGQ+SLR+ W Y+ +T+ +I V+DS DR+R+ +
Sbjct: 45 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR 104
Query: 68 ELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
EL +L E L+ A +LI+ANKQD+ ++S I +L+L SI+ W IQ C A+TGE
Sbjct: 105 ELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGE 163
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 78/113 (69%)
Query: 14 NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73
N+E + +KNI F +WDLGGQ +R W Y+++T+ VI V+DSTDR+R+ + K ELY +L
Sbjct: 57 NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL 116
Query: 74 NHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+ ++L K+ +LI+ANKQD+ ++ S EI+ L ++SI + W I + TG+
Sbjct: 117 DEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGD 169
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 108 bits (271), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 78/124 (62%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
+V SPT+G N++ + + +WD+GGQ+SLR+ W Y+ +T+ +I V+DS DR+R
Sbjct: 42 DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRX 101
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
+ EL +L E L+ A +LI+ANKQD+ ++S I L+L SI+ W IQ C A
Sbjct: 102 QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSA 161
Query: 123 LTGE 126
+TGE
Sbjct: 162 VTGE 165
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 78/124 (62%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
+V SPT+G N++ + + +WD+GG +SLR+ W Y+ +T+ +I V+DS DR+R+
Sbjct: 25 DVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRM 84
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
+ EL +L E L+ A +LI+ANKQD+ ++S I L+L SI+ W IQ C A
Sbjct: 85 QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 144
Query: 123 LTGE 126
+TGE
Sbjct: 145 VTGE 148
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
++ H +PT G N++ V + +WD+GGQ+ +R W +Y+ NT+ +I VIDS DR+R
Sbjct: 41 DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 100
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
T +EL ++L E LS VLI+ANKQD+ + EI+ L+L +I+ + W IQSC A
Sbjct: 101 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 160
Query: 123 LTGE 126
LTGE
Sbjct: 161 LTGE 164
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
++ H +PT G N++ V + +WD+GGQ+ +R W +Y+ NT+ +I VIDS DR+R
Sbjct: 40 DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
T +EL ++L E LS VLI+ANKQD+ + EI+ L+L +I+ + W IQSC A
Sbjct: 100 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159
Query: 123 LTGE 126
LTGE
Sbjct: 160 LTGE 163
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
++ H +PT G N++ V + +WD+GGQ+ +R W +Y+ NT+ +I VIDS DR+R
Sbjct: 28 DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 87
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
T +EL ++L E LS VLI+ANKQD+ + EI+ L+L +I+ + W IQSC A
Sbjct: 88 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 147
Query: 123 LTGE 126
LTGE
Sbjct: 148 LTGE 151
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 79/124 (63%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
++ H +PT G N++ V + +WD+GG + +R W +Y+ NT+ +I VIDS DR+R
Sbjct: 28 DISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRF 87
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
T +EL ++L E LS VLI+ANKQD+ + EI+ L+L +I+ + W IQSC A
Sbjct: 88 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 147
Query: 123 LTGE 126
LTGE
Sbjct: 148 LTGE 151
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PTIG ++E+ ++ F ++D+ GQ R W YY + +I VIDS+DR R+ + KEE
Sbjct: 53 PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEE 112
Query: 69 LYKMLNHEDLS--KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
L +LNH D+ + +L +ANK D++++++ V++S LL L +IK + WHI + A+ GE
Sbjct: 113 LDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
H + T+G NVE + F ++D+GG + R W TYY N + VI V+DS+D R+ +
Sbjct: 46 HITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV 105
Query: 66 KEELYKMLNHEDL-------SKAAVLIYANKQDIKNSMSPVEISNLLDLTSI 110
K E+ ML HED+ + L +ANK D + + E+ +LDLT++
Sbjct: 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL 157
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT+G N+ +V N+ +WD+GGQ R+ W Y ++ +ID+ DRE+I ++ E
Sbjct: 53 PTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNE 112
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
L+ +L+ L VL+ NK+D+ N++ ++ ++L++I+ ++ CC
Sbjct: 113 LHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREI----CC 161
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT+G N+ ++ N+ +WD+GGQ R+ W Y ++ ++D+ D+E+I +K E
Sbjct: 53 PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE 112
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
L+ +L+ L VL+ NK+D+ ++ E+ ++L++I+ ++ CC
Sbjct: 113 LHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI----CC 161
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT+G N+ ++ N+ +WD+GGQ R+ W Y ++ ++D+ D+E+I +K E
Sbjct: 62 PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE 121
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
L+ +L+ L VL+ NK+D+ ++ E+ ++L++I+ + + CC
Sbjct: 122 LHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR----EICC 170
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT EE+ NI F +DLGG R W Y+ ++ ++D+ D ER + E
Sbjct: 31 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 90
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
L + N +L +I NK D N++S E+ + L L + Q
Sbjct: 91 LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ 136
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT EE+ NI F +DLGG R W Y+ ++ ++D+ D ER + E
Sbjct: 53 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 112
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
L + N +L +I NK D N++S E+ + L L + Q
Sbjct: 113 LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ 158
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT+ EE+ + F +DLGG R W Y ++ ++D D ER+ +KEE
Sbjct: 52 PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE 111
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
L ++ E ++ +LI NK D ++S + + L
Sbjct: 112 LDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 150
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT+ EE+ + F +DLGG R W Y ++ ++D D ER+ +KEE
Sbjct: 55 PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE 114
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
L ++ E ++ +LI NK D ++S + + L
Sbjct: 115 LDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT+ EE+ + F +DLGG R W Y ++ ++D D ER+ +KEE
Sbjct: 46 PTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE 105
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
L ++ E ++ +LI NK D ++S + + L
Sbjct: 106 LDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 144
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT+ EE+ + F +DLGG + R W Y ++ ++D D R+ +K E
Sbjct: 65 PTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE 124
Query: 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
L ++ E +S +LI NK D +++S ++ + L
Sbjct: 125 LNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 163
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT G +K++HF M+D+GGQ+S R W + +I + +D + + EE
Sbjct: 179 PTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 69 LYKM----------LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
+ +M N++ + +++++ NK+D+ K SP+ I
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT G + +K++HF M+D+GGQ+S R W + +I + +D +++ + +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 69 LYKM----------LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
+M N++ + +++++ NK+D+ K SP+ I
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 271
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K + +WD GQ+ R + YY +ILV D TD ER ++ +K +N +
Sbjct: 54 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDE 112
Query: 81 AAVLIYANKQDIK 93
A +L+ NK D++
Sbjct: 113 AQLLLVGNKSDME 125
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K + +WD GQ+ R + YY +ILV D TD ER ++ +K +N +
Sbjct: 50 KKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTD-ERTFTNIKQWFKTVNEHANDE 108
Query: 81 AAVLIYANKQD 91
A +L+ NK D
Sbjct: 109 AQLLLVGNKSD 119
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K + +WD GQ+ R + YY +ILV D TD ER ++ +K +N +
Sbjct: 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDE 125
Query: 81 AAVLIYANKQDIK 93
A +L+ NK D++
Sbjct: 126 AQLLLVGNKSDME 138
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 8 SPTIGSNV--EEVIWKN-IH-FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERIS 63
+PTIG++ + V ++N +H F++WD GQ+ RA YY + I+V D T E S
Sbjct: 35 NPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFS 94
Query: 64 LTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
K + ++ H S V I NK D+ +
Sbjct: 95 TLKNWVRELRQHGPPS-IVVAIAGNKCDLTD 124
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 191 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 285
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 166 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 225
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 226 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 260
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 160 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 254
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 167 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 227 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 261
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 164 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 223
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 224 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 258
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 165 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 224
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 259
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 197 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 256
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 257 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 291
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 193 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 252
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 253 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 287
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 165 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 224
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 259
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 162 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 256
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 161 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 220
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 221 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 255
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 162 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 256
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 160 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 254
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 159 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 218
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 219 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 253
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K + +WD GQ+ R + YY +ILV D TD ER ++ +K +N +
Sbjct: 50 KKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITD-ERTFTNIKQWFKTVNEHANDE 108
Query: 81 AAVLIYANKQD 91
A +L+ NK D
Sbjct: 109 AQLLLVGNKSD 119
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K + +WD GQ+ R + YY +ILV D TD ER ++ +K +N +
Sbjct: 50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDE 108
Query: 81 AAVLIYANKQDIK 93
A +L+ NK D++
Sbjct: 109 AQLLLVGNKSDME 121
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+ GQ+S R W + +I + +D + + EE+ +M
Sbjct: 191 FKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 251 DSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTI 285
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---EELYKMLNHED 77
K ++ +WD GQ+ A YY ++ ILV D TD + K +EL KML +E
Sbjct: 67 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE- 125
Query: 78 LSKAAVLIYANKQDIK 93
+ I NK D++
Sbjct: 126 ---ICLCIVGNKIDLE 138
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K+++F M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 160 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ ++ +++++ NK+D+ K SP+ I
Sbjct: 220 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTI 254
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K+++F M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 167 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ ++ +++++ NK+D+ K SP+ I
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTI 261
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---EELYKMLNHED 77
K ++ +WD GQ+ A YY ++ ILV D TD + K +EL KML +E
Sbjct: 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE- 111
Query: 78 LSKAAVLIYANKQDIK 93
+ I NK D++
Sbjct: 112 ---ICLCIVGNKIDLE 124
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K+++F M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 167 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ ++ +++++ NK+D+ K SP+ I
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTI 261
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---EELYKMLNHED 77
K ++ +WD GQ+ A YY ++ ILV D TD + K +EL KML +E
Sbjct: 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE- 111
Query: 78 LSKAAVLIYANKQDIK 93
+ I NK D++
Sbjct: 112 ---ICLCIVGNKIDLE 124
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K+++F M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 190 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ ++ +++++ NK+D+ K SP+ I
Sbjct: 250 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTI 284
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 9 PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
TIG + + E+ K + +WD GQ+ R S+YY + +I+V D TD+E +
Sbjct: 39 STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
Query: 65 TKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
K L + ++ S L+ NK D+K+
Sbjct: 99 VKMWL-QEIDRYATSTVLKLLVGNKCDLKD 127
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 9 PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
TIG + + E+ K + +WD GQ+ R S+YY + +I+V D TD+E +
Sbjct: 39 STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
Query: 65 TKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
K L + ++ S L+ NK D+K+
Sbjct: 99 VKMWL-QEIDRYATSTVLKLLVGNKCDLKD 127
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---------- 66
E+ K I +WD GQ+ R S+YY +I+V D TD+E + K
Sbjct: 59 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 118
Query: 67 -EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
E + K+L N DL+ V+ Y ++ +S+
Sbjct: 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 152
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 10 TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
TIG + + E+ K + +WD GQ+ R S+YY + +I+V D TD+E +
Sbjct: 53 TIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV 112
Query: 66 KEELYKMLNHEDLSKAAVLIYANKQDIKN 94
K L + ++ S L+ NK D+K+
Sbjct: 113 KMWL-QEIDRYATSTVLKLLVGNKCDLKD 140
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+ GQ+S R W + +I + +D + + EE+ +M
Sbjct: 191 FKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 285
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+G Q+S R W + +I + +D + + EE+ +M
Sbjct: 190 FKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---------- 66
E+ K I +WD GQ+ R S+YY +I+V D TD+E + K
Sbjct: 76 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 135
Query: 67 -EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
E + K+L N DL+ V+ Y ++ +S+
Sbjct: 136 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 169
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 10 TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 48 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 107
Query: 66 K-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
K E + K+L N DL+ V+ Y ++ +S+
Sbjct: 108 KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 152
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 10 TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 57 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 116
Query: 66 K-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
K E + K+L N DL+ V+ Y ++ +S+
Sbjct: 117 KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 161
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 8 SPTIGSNV--EEVIWKN-IH-FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERIS 63
+PTIG++ + V ++N +H F++WD G + RA YY + I+V D T E S
Sbjct: 36 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFS 95
Query: 64 LTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
K + ++ H S V I NK D+ +
Sbjct: 96 TLKNWVRELRQHGPPS-IVVAIAGNKCDLTD 125
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 10 TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 38 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 97
Query: 66 K-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
K E + K+L N DL+ V+ Y ++ +S+
Sbjct: 98 KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 142
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K+++F M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 162 FKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 256
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 9 PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 30 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 89
Query: 65 TK-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
K E + K+L N DL+ V+ Y ++ +S+
Sbjct: 90 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 135
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 10 TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 38 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 97
Query: 66 K-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
K E + K+L N DL+ V+ Y ++ +S+
Sbjct: 98 KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 142
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K+++F M+D+GGQ+S R W + +I + +D + + EE+ +M
Sbjct: 193 FKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLF 252
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 253 NSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 287
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K++HF M+D+GG +S R W + +I + +D + + EE+ +M
Sbjct: 190 FKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ + +++++ NK+D+ K SP+ I
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 10 TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 41 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV 100
Query: 66 KEELYKMLNH--EDLSKAAVLIYANKQDI 92
K+ L ++ + E+++K L+ NK D+
Sbjct: 101 KQWLQEIDRYASENVNK---LLVGNKSDL 126
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 10 TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 41 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV 100
Query: 66 KEELYKMLNH--EDLSKAAVLIYANKQDI 92
K+ L ++ + E+++K L+ NK D+
Sbjct: 101 KQWLQEIDRYASENVNK---LLVGNKSDL 126
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+K+++F M+D+GGQ+S R W + +I + + + + + +E+ +M
Sbjct: 161 FKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLF 220
Query: 73 ---LNHEDLSKAAVLIYANKQDI 92
NH + +++++ NK+D+
Sbjct: 221 NSICNHRYFATTSIVLFLNKKDV 243
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY 70
G+ + + K I +WD GQ+S R+ +YY +LV D T RE + L
Sbjct: 58 FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE 117
Query: 71 KMLNHEDLSKAAVLIYANKQDIKN 94
H S +++ NK D+++
Sbjct: 118 DARQHSS-SNMVIMLIGNKSDLES 140
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT G + + KN+ F M D+GGQ+S R W + + ++ ++ S++ +++ + +
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 69 LYKM----------LNHEDLSKAAVLIYANKQDI 92
++ +N+ S +++++ NK D+
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
GS V V K + +WD GQ+ R+ +YY +LV D T RE
Sbjct: 62 FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE 111
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 9 PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 29 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 88
Query: 65 TKEELYKMLNH--EDLSKAAVLIYANKQDI 92
K+ L ++ + E+++K L+ NK D+
Sbjct: 89 VKQWLQEIDRYASENVNK---LLVGNKCDL 115
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT G + + KN+ F M D+GGQ+S R W + + ++ ++ S++ +++ + +
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 69 LYKM----------LNHEDLSKAAVLIYANKQDI 92
++ +N+ S +++++ NK D+
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-----ELYKMLNH 75
K + +WD GQ+ R S+YY +I+V D TDR+ K+ + Y M
Sbjct: 56 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAM--- 112
Query: 76 EDLSKAAVLIYANKQDI--KNSMSPVEISNLLDLTSIK 111
E+++K L+ NK D+ K ++ E L D IK
Sbjct: 113 ENVNK---LLVGNKCDLVSKRVVTSDEGRELADSHGIK 147
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 10 TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
TIG + + E+ K I +WD GQ+ R S+YY +I+V D TD+E +
Sbjct: 40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 99
Query: 66 KE 67
K+
Sbjct: 100 KQ 101
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVI----------DSTDR 59
T G + + + K+I F + D+GGQ+S R W +++++ + I V + +
Sbjct: 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNT 207
Query: 60 ERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92
R++ + + +E L A LI+ NK D+
Sbjct: 208 SRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDL 240
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL---YKML 73
E+ K I +WD GQ+ + S YY + + +ILV D T +E T ++L KM+
Sbjct: 69 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE----TFDDLPKWMKMI 124
Query: 74 NHEDLSKAAVLIYANKQD 91
+ A +L+ NK D
Sbjct: 125 DKYASEDAELLLVGNKLD 142
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL- 69
GS + V K + +WD GQ+ R+ +YY +LV D T RE + L
Sbjct: 47 FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 106
Query: 70 -YKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+ML +++ +++ NK+D+ + E++ L ++ + ALTGE
Sbjct: 107 DARMLASQNI---VIILCGNKKDLD---ADREVTFLEASRFAQENELMFLETSALTGE 158
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL- 69
GS + V K + +WD GQ+ R+ +YY +LV D T RE + L
Sbjct: 48 FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 107
Query: 70 -YKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+ML +++ +++ NK+D+ + E++ L ++ + ALTGE
Sbjct: 108 DARMLASQNI---VIILCGNKKDLD---ADREVTFLEASRFAQENELMFLETSALTGE 159
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
E+ + + +WD GQ+ R STYY T VI+V D T E K L+++ ++
Sbjct: 52 EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQ 109
Query: 77 DLSKAAVLIYANKQD 91
+ ++ NK D
Sbjct: 110 NCDDVCRILVGNKND 124
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
+KN+HF ++D+GGQ+S R W + + +I + + +++ E +M
Sbjct: 171 FKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLF 230
Query: 73 ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
N++ +++++ NK+D+ K SP+ I
Sbjct: 231 DSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTI 265
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+++ ++WD GQ+ A YY + +LV +TDRE
Sbjct: 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE 91
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY 70
G+ + + K I +WD GQ+S R+ +YY +LV D T R+ + L
Sbjct: 47 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE 106
Query: 71 KMLNHEDLSKAAVLIYANKQDIKN 94
H + S +++ NK D+++
Sbjct: 107 DARQHSN-SNMVIMLIGNKSDLES 129
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1 MNEVVHT-SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
M + HT G+ + EV + I +WD GQ+ RA +YY ++V D T R
Sbjct: 41 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 100
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 9 PTIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
PT+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 41 PTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR----- 95
Query: 65 TKEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 ---VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 9 PTIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
PT+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 41 PTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR----- 95
Query: 65 TKEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 ---VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 1 MNEVVHT-SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
M + HT G+ + EV + I +WD GQ RA +YY ++V D T R
Sbjct: 56 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRR 115
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86
+WD GQ+ RA S YY +LV D T + ++ L ++ ++ D S +L+
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNAD-SNIVILLV 119
Query: 87 ANKQDIK 93
NK D+K
Sbjct: 120 GNKSDLK 126
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLS 79
I F +WD GQ+ YY IL D T R + ++ +E ++ +E
Sbjct: 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--- 117
Query: 80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALT 124
A +++ ANK DIKN +IS L + +K + + A T
Sbjct: 118 -APIVVCANKIDIKNRQ---KISKKLVMEVLKGKNYEYFEISAKT 158
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
PT G + + KN+ F M D+GG +S R W + + ++ ++ S++ +++ + +
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 69 LYKM----------LNHEDLSKAAVLIYANKQDI 92
++ +N+ S +++++ NK D+
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86
+WD GQ+ R+ +Y+ + V+L+ D T E+ L E M+ +++
Sbjct: 81 LWDTAGQERFRSIAKSYFRKADGVLLLYDVTC-EKSFLNIREWVDMIEDAAHETVPIMLV 139
Query: 87 ANKQDIKNSMS 97
NK DI+++ +
Sbjct: 140 GNKADIRDTAA 150
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86
+WD G + RA S YY +LV D T + ++ + L ++ +H + + V++
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLV 121
Query: 87 ANKQDIKNSMS-PVEISNLL 105
NK D+ + P E + +
Sbjct: 122 GNKSDLSQAREVPTEEARMF 141
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86
+WD G + RA S YY +LV D T + ++ + L ++ +H + + V++
Sbjct: 78 IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLV 136
Query: 87 ANKQDIKNSMS-PVEISNLL 105
NK D+ + P E + +
Sbjct: 137 GNKSDLSQAREVPTEEARMF 156
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
+V K I +WD GQ+ RA S YY +LV D + L ++ +H
Sbjct: 72 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131
Query: 77 DLSKAAVLIYANKQDIKN 94
D S +++ NK D+++
Sbjct: 132 D-SNIVIMLVGNKSDLRH 148
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL- 69
GS + V K + +WD G + R+ +YY +LV D T RE + L
Sbjct: 45 FGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 104
Query: 70 -YKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+ML +++ +++ NK+D+ + E++ L ++ + ALTGE
Sbjct: 105 DARMLASQNI---VIILCGNKKDLD---ADREVTFLEASRFAQENELMFLETSALTGE 156
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
+V K I +WD GQ+ RA S YY +LV D + L ++ +H
Sbjct: 63 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 122
Query: 77 DLSKAAVLIYANKQDIKN 94
D S +++ NK D+++
Sbjct: 123 D-SNIVIMLVGNKSDLRH 139
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD-----RE-----RISLTKEELYKM 72
++F M+D+GGQ+ R W + + +I V+ S+ RE R+ +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 73 LNHEDLSKAAVLIYANKQDI 92
N+ L +V+++ NKQD+
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T++E + K + K L +
Sbjct: 57 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWV-KELQRQASPSIV 115
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 116 IALAGNKADLAN 127
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD-----RE-----RISLTKEELYKM 72
++F M+D+GGQ+ R W + + +I V+ S+ RE R+ +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 73 LNHEDLSKAAVLIYANKQDI 92
N+ L +V+++ NKQD+
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD-----RE-----RISLTKEELYKM 72
++F M+D+GGQ+ R W + + +I V+ S+ RE R+ +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 73 LNHEDLSKAAVLIYANKQDI 92
N+ L +V+++ NKQD+
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD-----RE-----RISLTKEELYKM 72
++F M+D+GGQ+ R W + + +I V+ S+ RE R+ +
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 73 LNHEDLSKAAVLIYANKQDI 92
N+ L +V+++ NKQD+
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+WD GQ+ R +YY + VILV D T R+
Sbjct: 68 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD 101
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK-------- 71
+K+++F +D+GGQ+S R W + +I + +D + + EE +
Sbjct: 187 FKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLF 246
Query: 72 --MLNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
+ N++ + +++++ NK+D+ K SP+ I
Sbjct: 247 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 281
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD-----RE-----RISLTKEELYKM 72
++F M+D+GGQ+ R W + + +I V+ S+ RE R+ +
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 73 LNHEDLSKAAVLIYANKQDI 92
N+ L +V+++ NKQD+
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ E + K + K L +
Sbjct: 56 VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 114
Query: 83 VLIYANKQDIKNSMS 97
+ + NK D+ N +
Sbjct: 115 IALSGNKADLANKRA 129
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 8 SPTIGSN--VEEVIWKN-IH-FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERIS 63
SPTIG++ + V N +H F++WD GQ+ + YY + ++V D T ++
Sbjct: 53 SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF- 111
Query: 64 LTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
T ++ K L + I NK D+ +
Sbjct: 112 YTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ E + K + K L +
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 113
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 114 IALSGNKADLAN 125
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ E + K + K L +
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 113
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 114 IALSGNKADLAN 125
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ E + K + K L +
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 113
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 114 IALSGNKADLAN 125
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ E + K + K L +
Sbjct: 56 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 114
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 115 IALSGNKADLAN 126
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ E + K + K L +
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 113
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 114 IALSGNKADLAN 125
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ E + K + K L +
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 113
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 114 IALSGNKADLAN 125
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 24 HFI---MWDLGGQQSLRAAWSTYYTNTEFVIL---VIDSTDRERISLTKEELYKMLNHED 77
HF+ +WD GQ+ R+ + +Y ++ +L V DS + +S K+E + ++
Sbjct: 58 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 117
Query: 78 LSKAAVLIYANKQDIK 93
+I NK DIK
Sbjct: 118 PESFPFVILGNKTDIK 133
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ E + K + K L +
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 113
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 114 IALSGNKADLAN 125
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR------ 95
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 47 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR------ 100
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 101 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 47 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR------ 100
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 101 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 7 TSPTIGSNVEE----VIWKNIHFIMWDLGGQQSLRAAW-STYYTNTEFVILVIDSTDRER 61
T TIG + E + + I +WD GQ+ R + YY N V+ V D T+
Sbjct: 58 TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXAS 117
Query: 62 I-SLTK--EELYKMLNHEDLSKAAVLIYANKQDIKNSMS-PVEIS 102
SL EE + L D+ + ++ NK D+++++ P +++
Sbjct: 118 FHSLPAWIEECKQHLLANDIPR---ILVGNKCDLRSAIQVPTDLA 159
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 35 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR------ 88
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 89 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 121
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR------ 95
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTN----------TEFVILVIDSTD 58
PT G +++ F M D+GGQ+S R W + N +E+ ++++S +
Sbjct: 181 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 240
Query: 59 RERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92
R+ +K ++ + ++V+++ NK+D+
Sbjct: 241 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTN----------TEFVILVIDSTD 58
PT G +++ F M D+GGQ+S R W + N +E+ ++++S +
Sbjct: 179 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 238
Query: 59 RERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92
R+ +K ++ + ++V+++ NK+D+
Sbjct: 239 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTN----------TEFVILVIDSTD 58
PT G +++ F M D+GGQ+S R W + N +E+ ++++S +
Sbjct: 179 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 238
Query: 59 RERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92
R+ +K ++ + ++V+++ NK+D+
Sbjct: 239 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM---- 72
+ + K I F M D+GGQ+S R W + ++ ++ S++ +++ + ++
Sbjct: 193 DFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESM 252
Query: 73 ------LNHEDLSKAAVLIYANKQDI 92
+N++ +++++ NK D+
Sbjct: 253 NIFETIVNNKLFFNVSIILFLNKMDL 278
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTN----------TEFVILVIDSTD 58
PT G +++ F M D+GGQ+S R W + N +E+ ++++S +
Sbjct: 173 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 232
Query: 59 RERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92
R+ +K ++ + ++V+++ NK+D+
Sbjct: 233 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSR------ 95
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTN----------TEFVILVIDSTD 58
PT G +++ F M D+GGQ+S R W + N +E+ ++++S +
Sbjct: 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 212
Query: 59 RERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92
R+ +K ++ + ++V+++ NK+D+
Sbjct: 213 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR------ 95
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDS 56
+N V +P I + K F WD GGQ+ + A+ + T + +L++DS
Sbjct: 76 LNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I+ D T R
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSR------ 95
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH 75
E+ K I +WD GQ+ RA S YY ++V D ++K Y+ NH
Sbjct: 56 EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD--------ISKSSSYENCNH 106
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ A Y +T+ +++ IDS D + E+ +
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 104
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 105 HF-CPNVPIILVGNKKDLRN 123
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
+V K +H +WD GQ +Y + ++L D T Y +NH
Sbjct: 76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135
Query: 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWH 116
K +++ K D++ S + N L ++ +H
Sbjct: 136 -CKKVPIIVVGCKTDLRKDKS---LVNKLRRNGLEPVTYH 171
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH- 75
E+ K + +WD GQ+ R +YY + IL D +TK + + H
Sbjct: 72 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYD--------ITKRSSFLSVPHW 123
Query: 76 -EDLSKAAV-----LIYANKQDI 92
ED+ K A L+ NK D+
Sbjct: 124 IEDVRKYAGSNIVQLLIGNKSDL 146
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD GQ+ YY + I++ D T R
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSR------ 95
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
+V K I +WD GQ+ R S YY +LV D + L ++ +H
Sbjct: 48 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 77 DLSKAAVLIYANKQDIK 93
D S +++ NK D++
Sbjct: 108 D-SNIVIMLVGNKSDLR 123
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 7 TSPTIGSNVEE----VIWKNIHFIMWDLGGQQSLRAAW-STYYTNTEFVILVIDSTDRER 61
T TIG + E + + I +WD GQ+ R + YY N V+ V D T+
Sbjct: 49 TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS 108
Query: 62 I-SLTK--EELYKMLNHEDLSKAAVLIYANKQDIKNSMS-PVEIS 102
SL EE + L D+ + ++ NK D+++++ P +++
Sbjct: 109 FHSLPAWIEECKQHLLANDIPR---ILVGNKCDLRSAIQVPTDLA 150
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K + +WD GQ+ R + YY IL+ D T+ E + ++ ++ +
Sbjct: 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDN 128
Query: 81 AAVLIYANKQDI-KNSMSPVEISNLL 105
A V++ NK D+ + + P E LL
Sbjct: 129 AQVILVGNKCDMEEERVVPTEKGQLL 154
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAV 83
MWD GQ+ R+ YY + ++L+ D T++ + I E+++ H+ A+
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VAL 119
Query: 84 LIYANKQD 91
++ NK D
Sbjct: 120 MLLGNKVD 127
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ +WD GQ+ R+ +Y ++ I+V D T+R+ T + + +LN E
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN-ERGKDVI 108
Query: 83 VLIYANKQDIKN 94
+ + NK D+ +
Sbjct: 109 IALVGNKTDLGD 120
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
+V K I +WD G + RA S YY +LV D + L ++ +H
Sbjct: 72 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131
Query: 77 DLSKAAVLIYANKQDIKN 94
D S +++ NK D+++
Sbjct: 132 D-SNIVIMLVGNKSDLRH 148
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
E+ + + +WD GQ+ R+ +YY + +IL D T E E L ++ +
Sbjct: 69 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128
Query: 77 DLSKAAVLIYANKQDI 92
+K ++ NK D+
Sbjct: 129 S-NKVITVLVGNKIDL 143
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K I +WD GQ+ R + YY IL+ D T+ E + ++ ++ +
Sbjct: 52 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDN 110
Query: 81 AAVLIYANKQDIKN 94
A VL+ NK D+++
Sbjct: 111 AQVLLVGNKCDMED 124
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 9 PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD 58
TIG + + E+ K I +WD GQ+ R + YY ++LV D T+
Sbjct: 37 STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 90
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 9 PTIGSN-VEEVIWKNIH---FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
PTIG+ + + + N H F +WD GQ+ + YY N + ++V D T + S
Sbjct: 34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQ--SF 91
Query: 65 TKEELYKMLNHEDLSKAAVL-IYANKQD 91
K + HE SK ++ + NK D
Sbjct: 92 IKARHWVKELHEQASKDIIIALVGNKID 119
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
+V K I +WD G + RA S YY +LV D + L ++ +H
Sbjct: 51 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 110
Query: 77 DLSKAAVLIYANKQDIKN 94
D S +++ NK D+++
Sbjct: 111 D-SNIVIMLVGNKSDLRH 127
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 9 PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD 58
TIG + + E+ K I +WD GQ+ R + YY ++LV D T+
Sbjct: 39 STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 92
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 24 HFI---MWDLGGQQSLRAAWSTYYTNTEFVIL---VIDSTDRERISLTKEELYKMLNHED 77
HF+ +WD GQ+ R+ + +Y ++ +L V DS + +S K+E + ++
Sbjct: 56 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 115
Query: 78 LSKAAVLIYANKQDI 92
+I NK DI
Sbjct: 116 PESFPFVILGNKIDI 130
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 24 HFI---MWDLGGQQSLRAAWSTYYTNTEFVIL---VIDSTDRERISLTKEELYKMLNHED 77
HF+ +WD GQ+ R+ + +Y ++ +L V DS + +S K+E + ++
Sbjct: 54 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 113
Query: 78 LSKAAVLIYANKQDI 92
+I NK DI
Sbjct: 114 PESFPFVILGNKIDI 128
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLN--HED 77
+ I F +WD G + YY N + I++ D T R +T YK + H D
Sbjct: 58 FGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSR----IT----YKNVPNWHRD 109
Query: 78 LSKA----AVLIYANKQDIK 93
L + +++ NK D+K
Sbjct: 110 LVRVCENIPIVLCGNKVDVK 129
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 45 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 102
Query: 75 HEDLSKAAVLIYANKQDIKNS 95
H +++ NK+D++N
Sbjct: 103 HF-CPNVPIILVGNKKDLRND 122
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 14 NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
NVEE W +H ++ GG+ L A W+ E ++VID+T R
Sbjct: 57 NVEEFDWSQVHIALFSAGGE--LSAKWAP--IAAEAGVVVIDNTSHFR 100
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 104
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 105 HF-CPNVPIILVGNKKDLRN 123
>pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 14 NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
NVEE W +H ++ GG+ L A W+ E ++VID+T R
Sbjct: 57 NVEEFDWSQVHIALFSAGGE--LSAKWAP--IAAEAGVVVIDNTSHFR 100
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 45 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 102
Query: 75 HEDLSKAAVLIYANKQDIKNS 95
H +++ NK+D++N
Sbjct: 103 HF-CPNVPIILVGNKKDLRND 122
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 51 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 108
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 109 HF-CPNVPIILVGNKKDLRN 127
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD G + + YY + I+V D T+ E + K + K L +
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIV 112
Query: 83 VLIYANKQDIKN 94
+ + NK D+ N
Sbjct: 113 IALSGNKADLAN 124
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 104
Query: 75 HEDLSKAAVLIYANKQDIKNS 95
H +++ NK+D++N
Sbjct: 105 HF-CPNVPIILVGNKKDLRND 124
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 104
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 105 HF-CPNVPIILVGNKKDLRN 123
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 48 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 105
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 106 HF-CPNVPIILVGNKKDLRN 124
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 106
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 107 HF-CPNVPIILVGNKKDLRN 125
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 48 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 105
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 106 HF-CPNVPIILVGNKKDLRN 124
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 106
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 107 HF-CPNVPIILVGNKKDLRN 125
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 50 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 107
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 108 HF-CPNVPIILVGNKKDLRN 126
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 104
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 105 HF-CPNVPIILVGNKKDLRN 123
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD G + YY + I++ D T R
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSR------ 95
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 96 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTDRERISLTKEELYKMLN 74
EV K + +WD GQ+ Y +T+ +++ IDS D + E+ +
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVK 106
Query: 75 HEDLSKAAVLIYANKQDIKN 94
H +++ NK+D++N
Sbjct: 107 HF-CPNVPIILVGNKKDLRN 125
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD G + YY + I++ D T R
Sbjct: 44 TLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSR------ 97
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 98 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 130
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLN--HEDLSK 80
I F +WD G + YY N + I++ D T R +T YK + H DL +
Sbjct: 54 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSR----IT----YKNVPNWHRDLVR 105
Query: 81 A----AVLIYANKQDIK 93
+++ NK D+K
Sbjct: 106 VCENIPIVLCGNKVDVK 122
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 10 TIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
T+G V +++ I F +WD G + YY + I++ D T R
Sbjct: 38 TLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSR------ 91
Query: 66 KEELYKMLN--HEDLSKA----AVLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 92 --VTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 124
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLN--HEDLSK 80
I F +WD G + YY N + I++ D T R +T YK + H DL +
Sbjct: 53 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSR----IT----YKNVPNWHRDLVR 104
Query: 81 A----AVLIYANKQDIK 93
+++ NK D+K
Sbjct: 105 VCENIPIVLCGNKVDVK 121
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/72 (16%), Positives = 34/72 (47%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+H +WD GQ+ R+ + ++ + +L+ D T ++ + + ++ +
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 143
Query: 83 VLIYANKQDIKN 94
+++ NK D+ +
Sbjct: 144 IVLIGNKADLPD 155
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
+V K I +WD G + RA S YY +LV D + L ++ +H
Sbjct: 48 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 77 DLSKAAVLIYANKQDIKN 94
D S + + NK D+++
Sbjct: 108 D-SNIVIXLVGNKSDLRH 124
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K I +WD GQ+ R + YY +L+ D ++E + ++ ++ +
Sbjct: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDN 127
Query: 81 AAVLIYANKQDIKN-SMSPVEISNLL 105
A V++ NK D+++ + P E L
Sbjct: 128 AQVILVGNKCDLEDERVVPAEDGRRL 153
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
+V K I +WD G + RA S YY +LV D + L ++ +H
Sbjct: 54 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113
Query: 77 DLSKAAVLIYANKQDIKN 94
D S + + NK D+++
Sbjct: 114 D-SNIVIXLVGNKSDLRH 130
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76
EV K + +WD GQ+ Y +T+ +++ + + E+ + H
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126
Query: 77 DLSKAAVLIYANKQDIKN 94
+++ ANK+D+++
Sbjct: 127 -CPNVPIILVANKKDLRS 143
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ + + K + K L +
Sbjct: 54 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWV-KELQRQASPNIV 112
Query: 83 VLIYANKQDI 92
+ + NK D+
Sbjct: 113 IALAGNKADL 122
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD GQ+ + YY + I+V D T+ + + K + K L +
Sbjct: 52 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWV-KELQRQASPNIV 110
Query: 83 VLIYANKQDI 92
+ + NK D+
Sbjct: 111 IALAGNKADL 120
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE 67
+ F +WD GQ+ + YY I+V D T++ K+
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK 105
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/80 (17%), Positives = 37/80 (46%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
+ IH +WD G + R+ + ++ + +L+ D T+ + + + ++ H
Sbjct: 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 81 AAVLIYANKQDIKNSMSPVE 100
+++ NK D+++ + E
Sbjct: 128 PDIVLCGNKSDLEDQRAVKE 147
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT---KEELYKMLNHEDLSKAAV 83
+WD GQ+ ++ +Y + +LV D T ++E + D
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 84 LIYANKQDIKN 94
++ NK D++N
Sbjct: 121 VVLGNKIDLEN 131
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTD 58
EV K + +WD GQ+ Y +T+ +++ IDS D
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT---KEELYKMLNHEDLSKAAV 83
+WD GQ+ ++ +Y + +LV D T ++E + D
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 84 LIYANKQDIKN 94
++ NK D +N
Sbjct: 121 VVLGNKIDFEN 131
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTD 58
EV K + +WD GQ+ Y +T+ +++ IDS D
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 110
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT---KEELYKMLNHEDLSKAAV 83
+WD GQ+ ++ +Y + +LV D T ++E + D
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 84 LIYANKQDIKN 94
++ NK D++N
Sbjct: 121 VVLGNKIDLEN 131
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILV--IDSTD 58
EV K + +WD GQ+ Y +T+ +++ IDS D
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 110
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 25 FIMWDLGGQQSLRAAWSTYYTNTEFVIL----------VIDSTDRERISLTKEELYKMLN 74
+ ++D+GGQ++ R W + VI + + + R+ TKE +L
Sbjct: 185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 244
Query: 75 HEDLSKAAVLIYANKQDI 92
K + +++ NK DI
Sbjct: 245 QPCFEKTSFMLFLNKFDI 262
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK----MLNHEDLSKAA 82
+ D GQ+ A Y E +LV TDR EE+YK +L +D +
Sbjct: 57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSF----EEIYKFQRQILRVKDRDEFP 112
Query: 83 VLIYANKQDI 92
+++ NK D+
Sbjct: 113 MILIGNKADL 122
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
NI F +WD GQ+ + YY I+V D ++ + K
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS 102
++TN IL + R ++L EL HE + KA L YA QD+ + P I
Sbjct: 54 FFTNRFNAILDMWKVGRYEVALMDGELTS--EHETILKALELDYARIQDVPDLTKPGLI- 110
Query: 103 NLLDLTSIKKQQWHIQSCCALTG 125
+LD+ S Q I L G
Sbjct: 111 -VLDMDSTAIQIECIDEIAKLAG 132
>pdb|1DML|A Chain A, Crystal Structure Of Herpes Simplex Ul42 Bound To The C-
Terminus Of Hsv Pol
pdb|1DML|C Chain C, Crystal Structure Of Herpes Simplex Ul42 Bound To The C-
Terminus Of Hsv Pol
pdb|1DML|E Chain E, Crystal Structure Of Herpes Simplex Ul42 Bound To The C-
Terminus Of Hsv Pol
pdb|1DML|G Chain G, Crystal Structure Of Herpes Simplex Ul42 Bound To The C-
Terminus Of Hsv Pol
Length = 319
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 47 TEFVILVIDSTDRERISLTKEELYKMLN 74
T FV+LV T ++ LT+ +L K+LN
Sbjct: 163 TSFVVLVPQGTPDVQLRLTRPQLTKVLN 190
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K I +WD G + R + YY IL D T+ E + ++ ++ +
Sbjct: 55 KRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYS-WDN 113
Query: 81 AAVLIYANKQDIKN 94
A VL+ NK D ++
Sbjct: 114 AQVLLVGNKCDXED 127
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE--ELYKMLNHEDLS 79
N+ +WD+GGQ Y + V+LV D T+ + ++ + K ++ E +
Sbjct: 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET 114
Query: 80 KAAVLIYANKQDIKN 94
+ V + NK D+++
Sbjct: 115 QPLVALVGNKIDLEH 129
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH 75
EV K I +WD G + RA S YY ++V D ++K Y+ NH
Sbjct: 53 EVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYD--------ISKSSSYENCNH 103
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKML 73
EV + + +WD GQ+ ++ + +Y + +L DR E + ++E
Sbjct: 50 EVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYA 109
Query: 74 NHEDLSKAAVLIYANKQDIKNSMSPVE 100
+ +D ++ NK D ++ E
Sbjct: 110 DVKDPEHFPFVVLGNKVDKEDRQVTTE 136
>pdb|3ISY|A Chain A, Crystal Structure Of An Intracellular Proteinase
Inhibitor (Ipi, Bsu11130) From Bacillus Subtilis At
2.61 A Resolution
Length = 120
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 34 QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY 70
QS RA + T +F ++V DS +ER +KE+ +
Sbjct: 29 QSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKXF 65
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD 58
+ I +WD GQ+ R+ +Y ++ ++V D T+
Sbjct: 53 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 90
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAV 83
+WD GQ+ ++ +Y + +LV D T+ E I ++E N
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121
Query: 84 LIYANKQDIKNS 95
+I NK D + S
Sbjct: 122 VILGNKIDAEES 133
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
+ + +WD GQ+ R+ +Y ++ ++V D T+ T + + + E S
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWI-DDVRTERGSD 119
Query: 81 AAVLIYANKQDIKN 94
+++ NK D+ +
Sbjct: 120 VIIMLVGNKTDLSD 133
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS 102
Y +EF+ + +D ++I ++E L + N D K+ ++ E++
Sbjct: 415 YIEYSEFISVCMD----KQILFSEERLRRAFNLFDTDKSG------------KITKEELA 458
Query: 103 NLLDLTSIKKQQWH 116
NL LTSI ++ W+
Sbjct: 459 NLFGLTSISEKTWN 472
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+ F +WD G + + YY + I+V D T+ + + K + K L +
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWV-KELQRQASPNIV 112
Query: 83 VLIYANKQDI 92
+ + NK D+
Sbjct: 113 IALAGNKADL 122
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD 58
+ + +WD GQ+ R+ +Y ++ ++V D T+
Sbjct: 48 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 85
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD 58
+ + +WD GQ+ R+ +Y ++ ++V D T+
Sbjct: 49 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 86
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/72 (15%), Positives = 33/72 (45%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+H +WD G + R+ + ++ + +L+ D T ++ + + ++ +
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 83 VLIYANKQDIKN 94
+++ NK D+ +
Sbjct: 130 IVLIGNKADLPD 141
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/72 (15%), Positives = 33/72 (45%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82
+H +WD G + R+ + ++ + +L+ D T ++ + + ++ +
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 83 VLIYANKQDIKN 94
+++ NK D+ +
Sbjct: 130 IVLIGNKADLPD 141
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 52 LVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87
+++ + ER+ T +E+ LN++DLS A LIY
Sbjct: 108 MIVSVSRLERVP-TYKEIKSELNYKDLSTAGFLIYP 142
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 27 MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT---KEELYKMLNHEDLSKAAV 83
+WD G + ++ +Y + +LV D T ++E + D
Sbjct: 61 IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 84 LIYANKQDIKN 94
++ NK D++N
Sbjct: 121 VVLGNKIDLEN 131
>pdb|2PA7|A Chain A, Structure Of Wild-type Dtdp-4-keto-6-deoxy-d-glucose-3,4-
Ketoisomerase From Aneurinibacillus Thermoaerophilus In
Complex With Tdp
pdb|2PA7|B Chain B, Structure Of Wild-type Dtdp-4-keto-6-deoxy-d-glucose-3,4-
Ketoisomerase From Aneurinibacillus Thermoaerophilus In
Complex With Tdp
Length = 141
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFV 50
+ E+ SP +G V +W +H D + S YY T+++
Sbjct: 77 IQEITLDSPAVGLYVGPAVWHEMH----DFSSDCVMMVLASDYYDETDYI 122
>pdb|2PAE|A Chain A, Structure Of A H49n Mutant
Dtdp-4-Keto-6-Deoxy-D-Glucose-3, 4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus In Complex With Tdp
pdb|2PAE|B Chain B, Structure Of A H49n Mutant
Dtdp-4-Keto-6-Deoxy-D-Glucose-3, 4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus In Complex With Tdp
Length = 141
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFV 50
+ E+ SP +G V +W +H D + S YY T+++
Sbjct: 77 IQEITLDSPAVGLYVGPAVWHEMH----DFSSDCVMMVLASDYYDETDYI 122
>pdb|2PAK|A Chain A, Structure Of A H51n Mutant
Dtdp-4-Keto-6-Deoxy-D-Glucose-3, 4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus Complexed With Tdp
pdb|2PAK|B Chain B, Structure Of A H51n Mutant
Dtdp-4-Keto-6-Deoxy-D-Glucose-3, 4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus Complexed With Tdp
Length = 141
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFV 50
+ E+ SP +G V +W +H D + S YY T+++
Sbjct: 77 IQEITLDSPAVGLYVGPAVWHEMH----DFSSDCVMMVLASDYYDETDYI 122
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+H +WD G + R+ + ++ + +L D T ++
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQ 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,573,738
Number of Sequences: 62578
Number of extensions: 121003
Number of successful extensions: 657
Number of sequences better than 100.0: 268
Number of HSP's better than 100.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 268
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)