Query psy6566
Match_columns 126
No_of_seqs 106 out of 1237
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 21:24:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 9.8E-33 2.1E-37 168.9 7.6 119 3-125 33-157 (205)
2 KOG0092|consensus 100.0 9.6E-32 2.1E-36 164.1 7.6 121 2-126 28-153 (200)
3 KOG0070|consensus 100.0 5.9E-30 1.3E-34 155.5 12.7 126 1-126 39-164 (181)
4 KOG0094|consensus 100.0 1.5E-30 3.2E-35 159.2 9.6 118 6-126 50-171 (221)
5 KOG0075|consensus 100.0 7.9E-29 1.7E-33 145.5 12.8 124 2-125 43-167 (186)
6 cd04149 Arf6 Arf6 subfamily. 100.0 5.8E-28 1.3E-32 149.4 15.0 125 2-126 32-156 (168)
7 PLN00223 ADP-ribosylation fact 100.0 5.1E-28 1.1E-32 151.3 14.8 125 2-126 40-164 (181)
8 KOG0078|consensus 100.0 1.7E-29 3.6E-34 156.5 8.0 119 3-125 36-159 (207)
9 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.8E-28 1.5E-32 147.9 14.9 125 2-126 23-147 (159)
10 smart00177 ARF ARF-like small 100.0 9.4E-28 2E-32 149.4 15.0 125 2-126 36-160 (175)
11 KOG0087|consensus 100.0 3.4E-29 7.3E-34 154.9 7.0 120 2-125 37-161 (222)
12 KOG0071|consensus 100.0 2E-27 4.3E-32 138.7 12.4 126 1-126 39-164 (180)
13 KOG0098|consensus 100.0 8.9E-29 1.9E-33 150.5 6.6 117 6-126 34-154 (216)
14 PTZ00133 ADP-ribosylation fact 100.0 7.1E-27 1.5E-31 146.2 14.9 125 2-126 40-164 (182)
15 cd04120 Rab12 Rab12 subfamily. 100.0 1.4E-27 3E-32 151.4 10.7 121 2-126 23-149 (202)
16 KOG0079|consensus 100.0 2.2E-28 4.7E-33 144.0 5.9 118 3-125 32-154 (198)
17 PTZ00099 rab6; Provisional 99.9 1.7E-27 3.6E-32 148.2 9.2 119 2-126 3-128 (176)
18 KOG0093|consensus 99.9 1.1E-27 2.3E-32 140.9 5.8 116 6-125 49-168 (193)
19 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.8E-25 3.9E-30 138.1 15.7 120 6-125 26-148 (167)
20 PF00025 Arf: ADP-ribosylation 99.9 3.3E-26 7.3E-31 142.4 12.4 125 2-126 37-162 (175)
21 cd04121 Rab40 Rab40 subfamily. 99.9 8.6E-27 1.9E-31 146.5 9.2 119 3-126 30-153 (189)
22 KOG0394|consensus 99.9 2.7E-27 5.9E-32 143.7 6.4 119 6-125 37-163 (210)
23 KOG0080|consensus 99.9 1.7E-27 3.6E-32 142.0 5.2 119 4-125 36-159 (209)
24 KOG0086|consensus 99.9 1.2E-26 2.6E-31 137.5 8.6 117 6-126 37-157 (214)
25 cd04151 Arl1 Arl1 subfamily. 99.9 3.1E-25 6.7E-30 135.8 15.2 125 2-126 22-146 (158)
26 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 7.1E-27 1.5E-31 146.1 8.1 123 2-126 28-165 (182)
27 cd04158 ARD1 ARD1 subfamily. 99.9 3.2E-25 6.9E-30 137.2 14.8 124 3-126 23-147 (169)
28 cd04154 Arl2 Arl2 subfamily. 99.9 2.7E-25 5.9E-30 138.0 14.6 123 4-126 39-161 (173)
29 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.9E-25 8.4E-30 137.5 14.8 125 2-126 38-162 (174)
30 cd04133 Rop_like Rop subfamily 99.9 1.1E-26 2.4E-31 144.6 7.4 123 2-126 24-159 (176)
31 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 6.6E-25 1.4E-29 135.3 15.0 118 5-124 26-144 (164)
32 KOG0073|consensus 99.9 2.6E-25 5.7E-30 132.8 12.5 121 6-126 43-164 (185)
33 cd01875 RhoG RhoG subfamily. 99.9 2.5E-26 5.5E-31 144.7 8.3 123 2-126 26-163 (191)
34 cd04131 Rnd Rnd subfamily. Th 99.9 3.3E-26 7.2E-31 142.7 7.7 123 2-126 24-161 (178)
35 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 6.8E-26 1.5E-30 146.0 9.3 123 2-126 36-173 (232)
36 cd04126 Rab20 Rab20 subfamily. 99.9 1.4E-25 3E-30 143.8 9.9 92 2-94 23-114 (220)
37 smart00176 RAN Ran (Ras-relate 99.9 4.7E-25 1E-29 139.6 11.8 117 2-126 18-140 (200)
38 cd04157 Arl6 Arl6 subfamily. 99.9 5.8E-24 1.3E-28 130.3 14.8 121 6-126 28-150 (162)
39 KOG0081|consensus 99.9 4.1E-26 9E-31 135.9 4.7 121 3-126 33-167 (219)
40 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 3.5E-25 7.6E-30 137.5 8.9 122 2-126 25-150 (172)
41 cd01874 Cdc42 Cdc42 subfamily. 99.9 3.3E-25 7.2E-30 137.9 8.4 123 2-126 24-161 (175)
42 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 6.2E-25 1.3E-29 140.9 9.8 123 2-125 24-160 (222)
43 cd04156 ARLTS1 ARLTS1 subfamil 99.9 8.7E-24 1.9E-28 129.4 14.5 124 3-126 23-148 (160)
44 cd04122 Rab14 Rab14 subfamily. 99.9 1.2E-24 2.5E-29 134.2 9.8 118 3-126 26-150 (166)
45 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.1E-24 4.6E-29 135.1 10.6 122 2-126 23-152 (182)
46 KOG0083|consensus 99.9 3.2E-26 6.9E-31 132.9 2.0 116 6-125 26-145 (192)
47 smart00178 SAR Sar1p-like memb 99.9 2.7E-23 5.8E-28 130.3 15.0 124 3-126 41-171 (184)
48 cd00878 Arf_Arl Arf (ADP-ribos 99.9 4.1E-23 8.9E-28 126.3 15.1 123 4-126 24-146 (158)
49 KOG0091|consensus 99.9 2.6E-25 5.7E-30 133.0 4.9 118 6-126 36-159 (213)
50 PLN03071 GTP-binding nuclear p 99.9 1.8E-24 3.8E-29 138.9 9.0 117 2-126 36-158 (219)
51 KOG0095|consensus 99.9 5.3E-25 1.1E-29 130.1 5.9 119 3-125 31-154 (213)
52 cd04136 Rap_like Rap-like subf 99.9 2.7E-24 5.8E-29 132.0 9.1 119 3-126 25-149 (163)
53 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.5E-23 7.6E-28 127.5 14.2 121 6-126 33-155 (167)
54 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.2E-23 9.2E-28 129.3 14.7 125 2-126 26-156 (183)
55 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 5.9E-24 1.3E-28 131.7 9.7 124 2-126 23-151 (170)
56 cd04175 Rap1 Rap1 subgroup. T 99.9 3.5E-24 7.5E-29 131.8 8.6 120 2-126 24-149 (164)
57 cd00879 Sar1 Sar1 subfamily. 99.9 1E-22 2.2E-27 128.0 15.3 124 3-126 43-177 (190)
58 cd01871 Rac1_like Rac1-like su 99.9 3E-24 6.5E-29 133.5 7.9 123 2-126 24-161 (174)
59 cd04127 Rab27A Rab27a subfamil 99.9 7.7E-24 1.7E-28 132.0 9.7 116 6-126 32-163 (180)
60 KOG0097|consensus 99.9 3.2E-24 7E-29 125.9 7.1 115 8-126 41-159 (215)
61 cd04117 Rab15 Rab15 subfamily. 99.9 9.7E-24 2.1E-28 129.7 9.6 121 2-126 23-148 (161)
62 cd04109 Rab28 Rab28 subfamily. 99.9 1.1E-23 2.4E-28 134.9 10.1 121 3-126 24-152 (215)
63 cd04144 Ras2 Ras2 subfamily. 99.9 5.8E-24 1.3E-28 133.8 8.6 122 2-126 22-149 (190)
64 PTZ00369 Ras-like protein; Pro 99.9 1.1E-23 2.5E-28 132.4 9.5 119 3-126 29-153 (189)
65 cd04176 Rap2 Rap2 subgroup. T 99.9 6.6E-24 1.4E-28 130.4 8.2 120 2-126 24-149 (163)
66 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.6E-23 3.4E-28 132.9 10.0 119 3-126 24-154 (201)
67 cd01865 Rab3 Rab3 subfamily. 99.9 2.6E-23 5.6E-28 128.1 9.6 118 3-126 25-149 (165)
68 KOG0395|consensus 99.9 2.2E-23 4.8E-28 131.4 9.2 120 3-125 27-150 (196)
69 cd04159 Arl10_like Arl10-like 99.9 6.3E-22 1.4E-26 120.4 15.3 121 6-126 27-147 (159)
70 cd01873 RhoBTB RhoBTB subfamil 99.9 1.1E-23 2.4E-28 133.1 7.4 117 6-126 36-182 (195)
71 KOG0072|consensus 99.9 4.2E-23 9.1E-28 121.1 9.0 125 2-126 41-165 (182)
72 KOG0088|consensus 99.9 5.2E-25 1.1E-29 131.2 0.9 114 8-125 43-160 (218)
73 cd04111 Rab39 Rab39 subfamily. 99.9 5.7E-23 1.2E-27 131.3 9.9 119 3-126 26-152 (211)
74 cd00877 Ran Ran (Ras-related n 99.9 1.5E-22 3.2E-27 125.0 11.1 114 6-126 28-145 (166)
75 cd04134 Rho3 Rho3 subfamily. 99.9 2.7E-23 5.8E-28 130.7 7.7 123 2-126 23-160 (189)
76 cd04140 ARHI_like ARHI subfami 99.9 5.8E-23 1.3E-27 126.6 9.0 121 3-126 25-151 (165)
77 cd04103 Centaurin_gamma Centau 99.9 6.1E-23 1.3E-27 125.8 8.9 119 2-126 23-145 (158)
78 cd04110 Rab35 Rab35 subfamily. 99.9 1.3E-22 2.8E-27 128.6 9.9 114 6-126 34-153 (199)
79 cd04119 RJL RJL (RabJ-Like) su 99.9 1.4E-22 3E-27 124.7 9.7 116 6-126 28-153 (168)
80 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.2E-22 2.7E-27 124.2 9.4 119 3-126 25-148 (162)
81 cd04115 Rab33B_Rab33A Rab33B/R 99.9 8.3E-23 1.8E-27 126.5 8.7 118 3-124 26-150 (170)
82 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.3E-22 2.8E-27 125.0 9.5 115 6-126 30-150 (166)
83 cd01867 Rab8_Rab10_Rab13_like 99.9 1.8E-22 3.8E-27 124.6 9.6 118 3-126 27-151 (167)
84 cd04143 Rhes_like Rhes_like su 99.9 1.2E-21 2.7E-26 127.6 14.0 121 2-126 23-157 (247)
85 PLN03110 Rab GTPase; Provision 99.9 1.6E-22 3.5E-27 129.6 9.5 116 6-126 40-160 (216)
86 cd04106 Rab23_lke Rab23-like s 99.9 1.7E-22 3.8E-27 123.8 8.9 114 6-126 28-149 (162)
87 smart00173 RAS Ras subfamily o 99.9 2E-22 4.4E-27 123.8 9.1 116 6-126 28-148 (164)
88 KOG0074|consensus 99.9 2.4E-22 5.2E-27 117.7 8.8 123 4-126 42-165 (185)
89 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.6E-22 5.6E-27 123.2 9.1 116 6-126 30-150 (164)
90 cd04125 RabA_like RabA-like su 99.9 3.5E-22 7.7E-27 125.5 9.9 119 2-126 23-148 (188)
91 cd04155 Arl3 Arl3 subfamily. 99.9 5.5E-21 1.2E-25 118.4 14.9 123 4-126 39-161 (173)
92 cd01868 Rab11_like Rab11-like. 99.9 4E-22 8.7E-27 122.7 9.6 115 6-126 31-151 (165)
93 cd04101 RabL4 RabL4 (Rab-like4 99.9 4.6E-22 1E-26 122.2 9.4 115 6-126 30-150 (164)
94 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.7E-21 3.7E-26 123.5 12.0 93 2-94 23-143 (202)
95 cd04112 Rab26 Rab26 subfamily. 99.9 5.4E-22 1.2E-26 125.0 9.4 115 6-126 29-149 (191)
96 PF00071 Ras: Ras family; Int 99.9 1E-22 2.2E-27 124.9 5.8 118 3-126 23-147 (162)
97 cd04116 Rab9 Rab9 subfamily. 99.9 7.2E-22 1.6E-26 122.1 9.6 117 6-126 33-157 (170)
98 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.3E-22 4.9E-27 124.8 7.0 122 3-126 24-160 (173)
99 cd01864 Rab19 Rab19 subfamily. 99.9 1.3E-21 2.8E-26 120.5 10.3 118 3-126 27-152 (165)
100 cd01866 Rab2 Rab2 subfamily. 99.9 1E-21 2.2E-26 121.4 9.6 115 6-126 32-152 (168)
101 KOG0076|consensus 99.9 1E-22 2.2E-27 122.8 4.9 121 6-126 52-173 (197)
102 cd04118 Rab24 Rab24 subfamily. 99.9 1E-21 2.3E-26 123.7 9.5 119 6-126 29-152 (193)
103 cd04124 RabL2 RabL2 subfamily. 99.9 1.4E-21 3E-26 120.0 9.8 113 6-126 28-144 (161)
104 PLN03118 Rab family protein; P 99.9 1.5E-21 3.3E-26 124.7 10.1 121 3-126 38-163 (211)
105 cd04113 Rab4 Rab4 subfamily. 99.9 1.1E-21 2.4E-26 120.2 9.2 115 6-126 28-148 (161)
106 cd04177 RSR1 RSR1 subgroup. R 99.9 9.5E-22 2.1E-26 121.5 8.9 116 6-126 29-150 (168)
107 cd04132 Rho4_like Rho4-like su 99.9 9.3E-22 2E-26 123.4 8.4 122 3-126 24-153 (187)
108 smart00174 RHO Rho (Ras homolo 99.9 9.6E-22 2.1E-26 121.9 8.4 119 6-126 26-158 (174)
109 PLN03108 Rab family protein; P 99.9 4.5E-21 9.8E-26 122.5 9.6 115 6-126 34-154 (210)
110 cd01892 Miro2 Miro2 subfamily. 99.8 8.1E-21 1.8E-25 117.6 9.1 111 5-126 32-152 (169)
111 cd01863 Rab18 Rab18 subfamily. 99.8 1.2E-20 2.6E-25 115.6 9.7 116 6-126 28-148 (161)
112 cd04146 RERG_RasL11_like RERG/ 99.8 2.9E-21 6.2E-26 119.0 7.0 115 6-125 27-148 (165)
113 cd04142 RRP22 RRP22 subfamily. 99.8 7.9E-21 1.7E-25 120.3 8.9 121 2-126 23-160 (198)
114 cd01861 Rab6 Rab6 subfamily. 99.8 2E-20 4.4E-25 114.6 9.6 115 6-126 28-148 (161)
115 cd01860 Rab5_related Rab5-rela 99.8 2.1E-20 4.6E-25 114.7 9.6 115 6-126 29-149 (163)
116 cd04148 RGK RGK subfamily. Th 99.8 1.6E-20 3.5E-25 120.7 9.1 117 5-126 28-149 (221)
117 cd04135 Tc10 TC10 subfamily. 99.8 8.2E-21 1.8E-25 117.7 7.4 123 3-126 24-160 (174)
118 smart00175 RAB Rab subfamily o 99.8 2.1E-20 4.6E-25 114.6 8.9 115 6-126 28-148 (164)
119 cd04147 Ras_dva Ras-dva subfam 99.8 1.8E-19 3.8E-24 114.2 11.5 117 6-126 27-149 (198)
120 PLN00023 GTP-binding protein; 99.8 1.8E-19 3.9E-24 120.1 11.1 93 3-95 45-166 (334)
121 cd04139 RalA_RalB RalA/RalB su 99.8 1.1E-19 2.5E-24 111.3 8.9 116 6-126 28-148 (164)
122 cd04114 Rab30 Rab30 subfamily. 99.8 2.3E-19 5E-24 110.7 10.3 116 6-126 35-155 (169)
123 cd01870 RhoA_like RhoA-like su 99.8 4.5E-19 9.7E-24 110.0 11.1 122 3-126 25-161 (175)
124 cd04123 Rab21 Rab21 subfamily. 99.8 2E-19 4.4E-24 109.9 9.4 115 6-126 28-148 (162)
125 cd01862 Rab7 Rab7 subfamily. 99.8 2.5E-19 5.5E-24 110.7 9.7 117 6-126 28-153 (172)
126 cd01893 Miro1 Miro1 subfamily. 99.8 3.7E-19 8.1E-24 109.7 10.4 104 21-126 45-150 (166)
127 PTZ00132 GTP-binding nuclear p 99.8 1E-18 2.2E-23 112.0 12.1 117 2-126 32-154 (215)
128 KOG0096|consensus 99.8 1.3E-19 2.9E-24 110.8 6.8 117 2-125 33-154 (216)
129 cd04137 RheB Rheb (Ras Homolog 99.8 5.5E-19 1.2E-23 110.1 8.7 116 6-126 29-149 (180)
130 KOG0393|consensus 99.8 8.2E-20 1.8E-24 113.8 4.7 122 2-125 27-164 (198)
131 cd00154 Rab Rab family. Rab G 99.8 5.4E-18 1.2E-22 103.0 12.3 114 7-126 29-148 (159)
132 cd00876 Ras Ras family. The R 99.8 1.9E-18 4.1E-23 105.4 9.2 116 6-126 27-147 (160)
133 cd00157 Rho Rho (Ras homology) 99.8 1.1E-18 2.3E-23 107.8 7.3 120 6-126 28-159 (171)
134 cd04129 Rho2 Rho2 subfamily. 99.8 1.2E-18 2.6E-23 109.5 6.9 123 2-126 24-159 (187)
135 cd04171 SelB SelB subfamily. 99.7 2.3E-17 4.9E-22 101.1 9.3 115 8-126 35-152 (164)
136 KOG4252|consensus 99.7 2.2E-20 4.9E-25 113.6 -4.0 118 2-124 43-165 (246)
137 COG2229 Predicted GTPase [Gene 99.7 7.8E-17 1.7E-21 98.5 10.7 111 9-126 53-164 (187)
138 KOG3883|consensus 99.7 1E-16 2.2E-21 95.4 8.7 116 6-124 39-159 (198)
139 cd01891 TypA_BipA TypA (tyrosi 99.7 3.8E-16 8.3E-21 98.6 11.0 105 17-126 59-168 (194)
140 KOG0077|consensus 99.7 1.5E-16 3.2E-21 95.8 8.0 122 4-125 45-178 (193)
141 cd01890 LepA LepA subfamily. 99.7 3.7E-16 7.9E-21 97.3 10.2 99 21-126 65-163 (179)
142 cd04105 SR_beta Signal recogni 99.7 4.8E-16 1E-20 98.9 10.2 94 3-96 24-125 (203)
143 cd01897 NOG NOG1 is a nucleola 99.7 8.8E-16 1.9E-20 94.6 10.6 111 9-126 33-154 (168)
144 PRK12299 obgE GTPase CgtA; Rev 99.7 9.9E-16 2.2E-20 103.7 10.4 114 9-126 191-314 (335)
145 smart00275 G_alpha G protein a 99.7 9.3E-16 2E-20 104.2 10.3 89 6-94 167-265 (342)
146 cd00066 G-alpha G protein alph 99.7 8.6E-16 1.9E-20 103.5 9.0 89 6-94 144-242 (317)
147 cd01898 Obg Obg subfamily. Th 99.7 1.9E-15 4.1E-20 93.2 9.9 115 9-126 33-157 (170)
148 COG1100 GTPase SAR1 and relate 99.7 3.5E-15 7.5E-20 95.7 11.1 90 6-95 33-126 (219)
149 cd00882 Ras_like_GTPase Ras-li 99.6 7.3E-15 1.6E-19 88.1 9.8 118 6-126 25-146 (157)
150 cd01881 Obg_like The Obg-like 99.6 4.9E-15 1.1E-19 91.7 9.0 116 8-126 28-163 (176)
151 cd01878 HflX HflX subfamily. 99.6 9.6E-15 2.1E-19 92.8 10.0 110 7-126 72-191 (204)
152 cd01879 FeoB Ferrous iron tran 99.6 5E-15 1.1E-19 90.2 8.0 106 10-126 30-143 (158)
153 KOG1673|consensus 99.6 1.2E-15 2.7E-20 91.0 4.9 117 6-124 48-170 (205)
154 TIGR03156 GTP_HflX GTP-binding 99.6 2.1E-14 4.6E-19 97.9 11.4 109 7-126 220-338 (351)
155 cd01883 EF1_alpha Eukaryotic e 99.6 1.3E-14 2.9E-19 93.2 9.7 116 8-126 62-191 (219)
156 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 2.2E-14 4.9E-19 88.2 10.2 112 9-126 33-152 (168)
157 TIGR02729 Obg_CgtA Obg family 99.6 1.6E-14 3.5E-19 97.7 10.3 114 9-126 190-315 (329)
158 PRK03003 GTP-binding protein D 99.6 2.1E-14 4.5E-19 101.5 11.2 109 13-126 249-368 (472)
159 TIGR00231 small_GTP small GTP- 99.6 3E-14 6.4E-19 86.2 10.3 116 6-126 29-150 (161)
160 cd00881 GTP_translation_factor 99.6 6.5E-14 1.4E-18 87.5 12.1 112 10-126 49-173 (189)
161 TIGR00483 EF-1_alpha translati 99.6 1E-14 2.2E-19 102.0 8.2 116 8-126 70-193 (426)
162 TIGR03594 GTPase_EngA ribosome 99.6 2.1E-14 4.5E-19 100.5 9.5 109 13-126 210-330 (429)
163 cd01889 SelB_euk SelB subfamil 99.6 2.8E-14 6E-19 90.0 9.2 114 8-126 39-172 (192)
164 PRK05291 trmE tRNA modificatio 99.6 8.7E-14 1.9E-18 97.7 11.0 100 9-126 249-356 (449)
165 PRK15494 era GTPase Era; Provi 99.5 1.7E-13 3.7E-18 93.3 11.9 111 7-126 84-202 (339)
166 cd01888 eIF2_gamma eIF2-gamma 99.5 2.8E-14 6E-19 90.8 7.5 101 23-126 83-185 (203)
167 TIGR01393 lepA GTP-binding pro 99.5 1.8E-13 3.9E-18 98.8 12.4 97 23-126 70-166 (595)
168 PRK12317 elongation factor 1-a 99.5 8.4E-14 1.8E-18 97.4 9.9 117 7-126 68-191 (425)
169 PRK03003 GTP-binding protein D 99.5 3.4E-13 7.4E-18 95.4 12.2 99 16-126 79-185 (472)
170 TIGR00475 selB selenocysteine- 99.5 6.1E-14 1.3E-18 101.1 8.5 113 9-126 36-152 (581)
171 TIGR02528 EutP ethanolamine ut 99.5 1.1E-14 2.3E-19 87.6 3.9 87 26-126 38-131 (142)
172 TIGR01394 TypA_BipA GTP-bindin 99.5 1.4E-13 2.9E-18 99.4 10.2 110 10-125 51-166 (594)
173 PRK10218 GTP-binding protein; 99.5 2.9E-13 6.3E-18 97.7 11.8 114 8-126 49-171 (607)
174 TIGR00450 mnmE_trmE_thdF tRNA 99.5 4.4E-13 9.6E-18 93.9 12.4 99 12-125 240-346 (442)
175 PF08477 Miro: Miro-like prote 99.5 4.5E-14 9.7E-19 82.5 5.8 69 21-91 48-119 (119)
176 cd04164 trmE TrmE (MnmE, ThdF, 99.5 6.4E-13 1.4E-17 80.6 11.1 97 13-126 39-143 (157)
177 cd01894 EngA1 EngA1 subfamily. 99.5 7.6E-13 1.7E-17 80.4 11.4 102 12-126 34-144 (157)
178 PRK05306 infB translation init 99.5 6.1E-13 1.3E-17 98.2 12.6 110 11-126 325-438 (787)
179 TIGR00487 IF-2 translation ini 99.5 8.5E-13 1.8E-17 95.2 12.2 111 10-126 121-236 (587)
180 PRK05433 GTP-binding protein L 99.5 8.6E-13 1.9E-17 95.5 12.1 98 22-126 73-170 (600)
181 cd01895 EngA2 EngA2 subfamily. 99.5 1.5E-12 3.2E-17 80.1 11.4 109 13-126 40-161 (174)
182 PRK12296 obgE GTPase CgtA; Rev 99.5 4.2E-13 9.2E-18 94.6 9.9 114 8-126 191-326 (500)
183 cd04166 CysN_ATPS CysN_ATPS su 99.5 7.9E-13 1.7E-17 84.4 9.9 114 9-126 63-180 (208)
184 TIGR00436 era GTP-binding prot 99.5 1.6E-12 3.5E-17 86.0 11.1 107 10-126 34-150 (270)
185 PF00009 GTP_EFTU: Elongation 99.5 6.1E-13 1.3E-17 83.7 8.5 113 8-126 53-173 (188)
186 KOG4423|consensus 99.5 7E-16 1.5E-20 94.5 -4.6 115 6-125 53-179 (229)
187 PRK04213 GTP-binding protein; 99.5 1.5E-13 3.3E-18 87.1 5.7 113 7-125 38-178 (201)
188 PRK12297 obgE GTPase CgtA; Rev 99.4 2.3E-12 5E-17 89.7 11.6 111 9-126 191-313 (424)
189 CHL00189 infB translation init 99.4 2.7E-12 5.8E-17 94.2 12.4 100 21-126 293-396 (742)
190 cd00880 Era_like Era (E. coli 99.4 3E-12 6.5E-17 77.4 10.3 110 12-126 33-150 (163)
191 TIGR03598 GTPase_YsxC ribosome 99.4 1.3E-12 2.8E-17 81.6 8.7 112 6-126 46-176 (179)
192 PRK11058 GTPase HflX; Provisio 99.4 9.1E-12 2E-16 87.0 12.8 110 8-126 229-348 (426)
193 PRK00093 GTP-binding protein D 99.4 5.9E-12 1.3E-16 88.4 11.9 103 11-126 37-148 (435)
194 PRK09518 bifunctional cytidyla 99.4 2.9E-12 6.3E-17 94.6 10.7 112 10-126 485-607 (712)
195 KOG0082|consensus 99.4 1.8E-12 3.9E-17 87.5 8.7 88 7-94 179-276 (354)
196 PRK00093 GTP-binding protein D 99.4 3.3E-12 7.2E-17 89.6 9.6 105 17-126 215-330 (435)
197 PRK09518 bifunctional cytidyla 99.4 9.2E-12 2E-16 92.0 12.2 96 19-126 319-422 (712)
198 TIGR00437 feoB ferrous iron tr 99.4 1.4E-12 3.1E-17 94.2 7.7 104 12-126 30-141 (591)
199 cd04168 TetM_like Tet(M)-like 99.4 9.7E-12 2.1E-16 80.9 10.8 80 11-95 52-131 (237)
200 TIGR03594 GTPase_EngA ribosome 99.4 1.3E-11 2.8E-16 86.5 12.0 101 13-126 37-146 (429)
201 TIGR00491 aIF-2 translation in 99.4 5.9E-12 1.3E-16 90.8 10.2 63 24-94 70-135 (590)
202 TIGR03680 eif2g_arch translati 99.4 3.4E-12 7.3E-17 88.9 8.4 100 22-126 79-182 (406)
203 PRK10512 selenocysteinyl-tRNA- 99.4 7.1E-12 1.5E-16 91.0 9.8 114 8-126 35-152 (614)
204 cd04169 RF3 RF3 subfamily. Pe 99.4 2E-11 4.2E-16 80.7 11.1 79 13-96 61-139 (267)
205 cd01885 EF2 EF2 (for archaea a 99.4 1.3E-11 2.8E-16 79.5 9.7 67 22-93 72-138 (222)
206 cd01884 EF_Tu EF-Tu subfamily. 99.3 1.6E-11 3.5E-16 77.7 9.3 106 16-126 58-169 (195)
207 PLN00043 elongation factor 1-a 99.3 2E-11 4.4E-16 85.8 10.2 113 9-126 71-199 (447)
208 TIGR00485 EF-Tu translation el 99.3 1.2E-11 2.7E-16 85.8 9.0 112 9-125 61-178 (394)
209 PF00503 G-alpha: G-protein al 99.3 6E-12 1.3E-16 87.2 7.1 87 7-93 219-316 (389)
210 cd01886 EF-G Elongation factor 99.3 4.9E-11 1.1E-15 78.9 10.8 81 10-95 51-131 (270)
211 PRK15467 ethanolamine utilizat 99.3 1E-11 2.2E-16 76.2 6.7 88 27-126 41-133 (158)
212 PRK04000 translation initiatio 99.3 2.2E-11 4.7E-16 84.9 9.0 99 23-126 85-187 (411)
213 PRK04004 translation initiatio 99.3 3.7E-11 8E-16 86.9 10.2 61 25-93 73-136 (586)
214 PF09439 SRPRB: Signal recogni 99.3 2.9E-12 6.2E-17 79.6 3.7 81 21-101 47-133 (181)
215 TIGR00157 ribosome small subun 99.3 6.8E-12 1.5E-16 81.9 5.6 85 34-126 24-109 (245)
216 PRK12298 obgE GTPase CgtA; Rev 99.3 7.5E-11 1.6E-15 81.6 10.4 117 8-126 191-319 (390)
217 PRK00454 engB GTP-binding prot 99.3 4.5E-11 9.7E-16 75.4 8.6 115 6-126 52-180 (196)
218 KOG0090|consensus 99.3 1.1E-10 2.3E-15 73.5 10.0 93 5-97 64-162 (238)
219 PRK00089 era GTPase Era; Revie 99.3 1.2E-10 2.6E-15 77.9 10.6 98 21-126 51-157 (292)
220 cd04163 Era Era subfamily. Er 99.2 1.2E-10 2.7E-15 71.0 9.4 98 21-126 49-155 (168)
221 PRK13351 elongation factor G; 99.2 1.2E-10 2.5E-15 86.0 10.8 84 7-95 57-140 (687)
222 PRK14845 translation initiatio 99.2 1.7E-10 3.7E-15 87.4 11.7 62 25-94 528-592 (1049)
223 KOG0462|consensus 99.2 1E-10 2.3E-15 82.3 9.5 99 21-126 123-221 (650)
224 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 3.3E-11 7.1E-16 77.9 6.5 87 6-94 30-125 (232)
225 cd04165 GTPBP1_like GTPBP1-lik 99.2 1.6E-10 3.4E-15 74.7 9.6 74 17-95 78-153 (224)
226 PRK05124 cysN sulfate adenylyl 99.2 9.2E-11 2E-15 83.1 9.1 114 9-126 93-211 (474)
227 TIGR00484 EF-G translation elo 99.2 1.9E-10 4.1E-15 84.9 11.0 82 9-95 61-142 (689)
228 COG0532 InfB Translation initi 99.2 3.4E-10 7.3E-15 79.5 11.6 107 11-126 40-156 (509)
229 cd04167 Snu114p Snu114p subfam 99.2 1.8E-10 3.9E-15 73.8 9.6 67 22-93 70-136 (213)
230 TIGR02034 CysN sulfate adenyly 99.2 7.7E-11 1.7E-15 82.1 8.3 114 9-126 66-183 (406)
231 cd01896 DRG The developmentall 99.2 3.2E-10 7E-15 73.6 10.6 52 9-60 33-91 (233)
232 PRK00741 prfC peptide chain re 99.2 2.3E-10 5.1E-15 81.9 10.6 77 14-95 70-146 (526)
233 PRK12736 elongation factor Tu; 99.2 1.2E-10 2.7E-15 80.9 8.9 111 10-125 62-178 (394)
234 KOG1145|consensus 99.2 5.2E-10 1.1E-14 79.0 11.2 106 12-126 189-302 (683)
235 PRK12735 elongation factor Tu; 99.2 3.3E-10 7.1E-15 78.8 10.3 103 18-125 70-178 (396)
236 COG0486 ThdF Predicted GTPase 99.2 4.7E-10 1E-14 77.9 10.9 106 7-126 249-362 (454)
237 PTZ00141 elongation factor 1- 99.2 3.5E-10 7.6E-15 79.7 9.8 114 9-126 71-199 (446)
238 TIGR00503 prfC peptide chain r 99.2 2.9E-10 6.4E-15 81.4 9.5 74 16-94 73-146 (527)
239 PRK09554 feoB ferrous iron tra 99.1 3.4E-10 7.4E-15 84.1 9.2 106 10-126 37-154 (772)
240 PLN03126 Elongation factor Tu; 99.1 4E-10 8.6E-15 79.9 8.7 106 15-125 136-247 (478)
241 CHL00071 tufA elongation facto 99.1 6.3E-10 1.4E-14 77.7 9.5 105 17-126 69-179 (409)
242 PF02421 FeoB_N: Ferrous iron 99.1 4.5E-10 9.8E-15 68.5 7.6 105 7-126 31-147 (156)
243 COG1160 Predicted GTPases [Gen 99.1 8.1E-10 1.8E-14 76.5 9.6 113 9-126 212-337 (444)
244 PRK05506 bifunctional sulfate 99.1 4.2E-10 9E-15 82.4 8.6 114 9-126 90-207 (632)
245 cd04170 EF-G_bact Elongation f 99.1 1.5E-09 3.3E-14 71.8 10.2 83 8-95 49-131 (268)
246 COG1217 TypA Predicted membran 99.1 4.9E-10 1.1E-14 77.8 7.2 105 16-125 61-170 (603)
247 KOG1489|consensus 99.1 2E-09 4.3E-14 71.6 8.8 97 23-126 244-353 (366)
248 PRK00049 elongation factor Tu; 99.0 3.2E-09 7E-14 73.9 10.0 111 10-125 62-178 (396)
249 KOG0099|consensus 99.0 8E-10 1.7E-14 71.9 6.2 86 9-94 188-283 (379)
250 PRK12739 elongation factor G; 99.0 3.8E-09 8.2E-14 78.1 10.5 82 9-95 59-140 (691)
251 PRK12740 elongation factor G; 99.0 5.6E-09 1.2E-13 77.0 11.2 84 7-95 44-127 (668)
252 COG1159 Era GTPase [General fu 99.0 4.4E-09 9.5E-14 69.4 9.5 106 13-126 43-158 (298)
253 PTZ00327 eukaryotic translatio 99.0 1.5E-09 3.3E-14 76.5 7.7 99 23-126 117-219 (460)
254 cd01876 YihA_EngB The YihA (En 99.0 5.2E-09 1.1E-13 63.9 9.2 115 6-126 27-157 (170)
255 COG1160 Predicted GTPases [Gen 99.0 4.1E-09 8.9E-14 73.1 8.9 105 9-125 37-150 (444)
256 COG0481 LepA Membrane GTPase L 99.0 2.8E-09 6.2E-14 74.3 7.4 95 21-125 74-171 (603)
257 PLN03127 Elongation factor Tu; 99.0 6.1E-09 1.3E-13 73.5 9.1 111 9-124 110-226 (447)
258 COG2895 CysN GTPases - Sulfate 99.0 2.6E-09 5.7E-14 72.0 6.7 113 9-126 72-189 (431)
259 COG5256 TEF1 Translation elong 98.9 5.7E-09 1.2E-13 71.6 7.8 115 9-126 71-197 (428)
260 PRK09866 hypothetical protein; 98.9 2.5E-08 5.4E-13 72.4 10.2 102 22-126 229-339 (741)
261 KOG0085|consensus 98.9 1.8E-10 3.9E-15 73.7 -1.0 89 7-95 183-281 (359)
262 PRK00007 elongation factor G; 98.9 4.8E-08 1E-12 72.4 11.2 82 9-95 61-142 (693)
263 PRK13768 GTPase; Provisional 98.8 5.6E-09 1.2E-13 68.6 5.1 71 23-95 97-177 (253)
264 COG1084 Predicted GTPase [Gene 98.8 4.6E-08 9.9E-13 65.5 8.8 91 9-102 201-302 (346)
265 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.8E-08 3.8E-13 60.7 5.7 77 42-126 7-83 (141)
266 cd01859 MJ1464 MJ1464. This f 98.8 1.5E-08 3.3E-13 61.8 5.4 81 36-126 2-82 (156)
267 KOG1707|consensus 98.8 6.2E-09 1.4E-13 73.9 3.7 75 21-95 54-130 (625)
268 TIGR00490 aEF-2 translation el 98.8 5.9E-08 1.3E-12 72.2 8.8 83 7-94 66-152 (720)
269 COG2262 HflX GTPases [General 98.8 1.6E-07 3.4E-12 64.6 10.0 108 9-126 225-342 (411)
270 PRK12289 GTPase RsgA; Reviewed 98.7 4.1E-08 9E-13 67.3 5.7 78 40-126 83-161 (352)
271 KOG3886|consensus 98.7 6E-08 1.3E-12 62.2 5.6 87 7-95 36-131 (295)
272 cd01855 YqeH YqeH. YqeH is an 98.7 5E-08 1.1E-12 61.5 5.0 84 36-126 24-111 (190)
273 cd01899 Ygr210 Ygr210 subfamil 98.7 3.8E-07 8.3E-12 61.8 9.4 37 22-58 68-111 (318)
274 PRK00098 GTPase RsgA; Reviewed 98.6 6.5E-08 1.4E-12 65.1 4.8 75 44-126 78-153 (298)
275 cd01854 YjeQ_engC YjeQ/EngC. 98.6 1.5E-07 3.2E-12 63.1 6.3 75 43-126 75-150 (287)
276 cd01850 CDC_Septin CDC/Septin. 98.6 2.1E-07 4.6E-12 62.0 6.8 83 7-94 43-157 (276)
277 COG4108 PrfC Peptide chain rel 98.6 3.5E-07 7.7E-12 63.5 7.6 86 16-106 74-162 (528)
278 PTZ00416 elongation factor 2; 98.5 5.7E-07 1.2E-11 68.0 8.2 67 22-93 91-157 (836)
279 COG0480 FusA Translation elong 98.5 8E-07 1.7E-11 65.7 8.6 78 13-95 65-143 (697)
280 PF01926 MMR_HSR1: 50S ribosom 98.5 7E-06 1.5E-10 47.6 11.0 75 9-89 33-116 (116)
281 TIGR03597 GTPase_YqeH ribosome 98.5 8.1E-08 1.8E-12 66.2 3.1 86 33-126 50-139 (360)
282 COG0536 Obg Predicted GTPase [ 98.5 8.8E-07 1.9E-11 59.8 7.1 74 21-94 205-289 (369)
283 KOG0458|consensus 98.5 3.7E-07 7.9E-12 65.2 5.4 108 16-126 248-368 (603)
284 PLN00116 translation elongatio 98.5 1.4E-06 3.1E-11 66.0 8.9 67 22-93 97-163 (843)
285 PF10662 PduV-EutP: Ethanolami 98.5 7.3E-07 1.6E-11 53.5 5.8 89 26-126 39-132 (143)
286 PRK07560 elongation factor EF- 98.4 1.4E-06 3.1E-11 65.1 8.5 69 21-94 85-153 (731)
287 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.4E-06 3E-11 53.3 6.2 76 43-125 5-80 (157)
288 PRK12288 GTPase RsgA; Reviewed 98.4 1.2E-06 2.6E-11 60.1 6.2 77 44-126 118-194 (347)
289 COG3276 SelB Selenocysteine-sp 98.4 3.4E-06 7.4E-11 58.7 8.2 111 8-126 35-148 (447)
290 cd01882 BMS1 Bms1. Bms1 is an 98.4 2.8E-06 6.1E-11 55.0 7.1 97 21-125 81-181 (225)
291 COG0370 FeoB Fe2+ transport sy 98.4 8E-06 1.7E-10 59.6 10.0 103 9-126 36-150 (653)
292 cd04104 p47_IIGP_like p47 (47- 98.3 1.3E-06 2.9E-11 55.4 4.6 64 23-93 52-120 (197)
293 COG0218 Predicted GTPase [Gene 98.3 2.3E-05 5E-10 49.5 9.4 66 25-95 72-150 (200)
294 cd01849 YlqF_related_GTPase Yl 98.2 3.2E-06 7E-11 51.6 5.4 70 48-126 1-71 (155)
295 PF06858 NOG1: Nucleolar GTP-b 98.2 7.8E-06 1.7E-10 41.2 4.8 45 45-91 12-58 (58)
296 KOG1423|consensus 98.2 1.3E-05 2.8E-10 53.8 7.0 74 18-95 115-200 (379)
297 cd01856 YlqF YlqF. Proteins o 98.1 3.5E-06 7.5E-11 52.3 4.0 76 38-125 11-86 (171)
298 KOG0468|consensus 98.1 5.2E-06 1.1E-10 60.7 5.1 68 21-93 195-262 (971)
299 KOG1490|consensus 98.1 2.7E-06 5.8E-11 60.2 3.4 110 13-124 205-325 (620)
300 COG1163 DRG Predicted GTPase [ 98.1 4E-05 8.6E-10 51.8 8.5 52 10-61 97-155 (365)
301 KOG1191|consensus 98.1 6.9E-05 1.5E-09 53.1 9.9 87 9-95 302-404 (531)
302 cd01852 AIG1 AIG1 (avrRpt2-ind 98.0 0.00016 3.5E-09 45.8 10.2 85 9-95 35-131 (196)
303 KOG1144|consensus 98.0 1.6E-05 3.4E-10 58.9 5.8 62 24-93 541-605 (1064)
304 TIGR03596 GTPase_YlqF ribosome 98.0 1.8E-05 3.9E-10 52.8 5.6 75 39-125 14-88 (276)
305 smart00010 small_GTPase Small 97.9 4.3E-06 9.3E-11 48.7 1.0 55 37-94 37-91 (124)
306 PRK09563 rbgA GTPase YlqF; Rev 97.9 3.7E-05 8.1E-10 51.6 5.2 74 40-125 18-91 (287)
307 COG5257 GCD11 Translation init 97.9 2.8E-05 6.1E-10 52.5 4.5 98 23-125 86-187 (415)
308 smart00053 DYNc Dynamin, GTPas 97.8 0.00089 1.9E-08 43.9 11.2 71 21-95 123-207 (240)
309 PF03029 ATP_bind_1: Conserved 97.8 1.1E-05 2.3E-10 52.8 2.3 67 24-94 92-170 (238)
310 PRK13796 GTPase YqeH; Provisio 97.8 4.6E-05 9.9E-10 52.9 5.3 84 34-126 57-145 (365)
311 PF00350 Dynamin_N: Dynamin fa 97.8 0.00012 2.7E-09 44.9 6.1 66 21-90 99-168 (168)
312 PRK01889 GTPase RsgA; Reviewed 97.8 0.00018 3.8E-09 49.8 7.3 74 44-126 110-183 (356)
313 KOG1424|consensus 97.7 7.7E-05 1.7E-09 53.1 4.9 80 36-124 165-244 (562)
314 COG0050 TufB GTPases - transla 97.7 0.00028 6E-09 47.4 7.1 78 10-95 62-143 (394)
315 PRK09435 membrane ATPase/prote 97.7 0.00017 3.7E-09 49.4 6.3 94 21-126 147-246 (332)
316 TIGR00750 lao LAO/AO transport 97.7 0.00029 6.4E-09 47.6 7.3 94 21-126 125-224 (300)
317 KOG0465|consensus 97.6 0.00022 4.8E-09 51.9 5.8 78 15-97 96-173 (721)
318 KOG0467|consensus 97.6 0.00013 2.7E-09 54.3 4.6 80 7-91 52-135 (887)
319 KOG0461|consensus 97.6 0.00072 1.6E-08 46.5 7.6 99 21-125 68-174 (522)
320 COG3596 Predicted GTPase [Gene 97.5 0.00042 9.1E-09 46.0 5.9 71 21-94 85-162 (296)
321 COG5258 GTPBP1 GTPase [General 97.5 0.0016 3.5E-08 45.4 8.7 70 22-96 200-271 (527)
322 KOG3887|consensus 97.5 0.00085 1.8E-08 44.0 7.0 71 23-94 75-149 (347)
323 TIGR00101 ureG urease accessor 97.4 0.00042 9.2E-09 44.2 5.3 88 22-126 91-182 (199)
324 KOG0464|consensus 97.4 3.7E-05 8E-10 53.8 0.2 72 18-94 97-168 (753)
325 KOG1532|consensus 97.4 0.0017 3.8E-08 43.3 7.4 71 22-95 115-196 (366)
326 TIGR00991 3a0901s02IAP34 GTP-b 97.4 0.0047 1E-07 42.0 9.6 73 19-93 82-166 (313)
327 cd01853 Toc34_like Toc34-like 97.3 0.0048 1E-07 40.8 8.9 81 12-94 68-163 (249)
328 COG4917 EutP Ethanolamine util 97.2 0.00082 1.8E-08 39.6 4.2 87 27-125 41-131 (148)
329 cd04178 Nucleostemin_like Nucl 97.1 0.00065 1.4E-08 42.3 3.5 43 48-95 1-45 (172)
330 TIGR00073 hypB hydrogenase acc 97.1 0.0015 3.2E-08 41.8 4.9 90 22-126 102-193 (207)
331 COG1162 Predicted GTPases [Gen 97.1 0.0028 6E-08 42.8 6.1 75 44-125 77-152 (301)
332 KOG0459|consensus 97.0 0.0012 2.6E-08 46.2 3.9 120 7-126 141-272 (501)
333 PF04548 AIG1: AIG1 family; I 96.8 0.021 4.6E-07 36.7 8.4 85 10-96 36-132 (212)
334 KOG1954|consensus 96.8 0.0061 1.3E-07 42.5 6.1 67 24-94 148-225 (532)
335 KOG0460|consensus 96.7 0.0071 1.5E-07 41.7 5.7 70 21-94 115-184 (449)
336 PRK09602 translation-associate 96.6 0.011 2.3E-07 41.8 6.6 35 23-57 72-113 (396)
337 cd03110 Fer4_NifH_child This p 96.5 0.03 6.5E-07 34.8 7.7 67 21-94 91-157 (179)
338 KOG2484|consensus 96.4 0.0078 1.7E-07 42.1 4.7 67 36-106 136-203 (435)
339 KOG0705|consensus 96.4 0.0074 1.6E-07 44.0 4.7 118 2-125 53-174 (749)
340 COG1161 Predicted GTPases [Gen 96.4 0.0083 1.8E-07 41.1 4.7 83 31-124 18-101 (322)
341 KOG0448|consensus 96.3 0.035 7.6E-07 41.5 7.6 67 24-95 207-276 (749)
342 KOG1707|consensus 96.3 0.028 6.1E-07 41.2 7.0 76 15-95 464-541 (625)
343 COG3640 CooC CO dehydrogenase 96.3 0.017 3.7E-07 37.8 5.3 65 21-93 132-198 (255)
344 KOG0463|consensus 96.0 0.023 5.1E-07 39.8 5.2 68 23-95 219-288 (641)
345 KOG0466|consensus 95.9 0.0039 8.5E-08 42.3 1.3 96 23-123 125-224 (466)
346 TIGR02836 spore_IV_A stage IV 95.6 0.14 3E-06 36.7 7.9 82 7-92 67-192 (492)
347 PF05049 IIGP: Interferon-indu 95.4 0.021 4.6E-07 39.9 3.5 63 23-92 86-153 (376)
348 KOG3905|consensus 95.4 0.3 6.4E-06 33.9 8.7 62 6-67 77-149 (473)
349 KOG0410|consensus 95.1 0.023 5E-07 39.0 2.9 83 10-94 212-308 (410)
350 cd02038 FleN-like FleN is a me 95.1 0.16 3.6E-06 30.3 6.3 66 23-93 45-110 (139)
351 KOG1143|consensus 95.1 0.095 2.1E-06 36.9 5.7 68 23-95 249-318 (591)
352 KOG0447|consensus 95.1 1 2.2E-05 33.6 10.9 94 10-106 396-507 (980)
353 cd01900 YchF YchF subfamily. 95.0 0.083 1.8E-06 35.5 5.2 50 8-57 30-103 (274)
354 KOG0469|consensus 94.8 0.076 1.6E-06 38.8 4.8 68 21-93 96-163 (842)
355 COG4963 CpaE Flp pilus assembl 94.5 0.55 1.2E-05 32.9 8.3 82 21-106 216-297 (366)
356 cd03111 CpaE_like This protein 94.5 0.35 7.6E-06 27.5 6.4 63 23-89 43-106 (106)
357 cd03112 CobW_like The function 94.4 0.18 4E-06 30.9 5.3 65 22-92 86-158 (158)
358 PTZ00258 GTP-binding protein; 94.3 0.4 8.7E-06 34.0 7.4 35 23-57 85-126 (390)
359 TIGR00993 3a0901s04IAP86 chlor 94.2 0.73 1.6E-05 35.1 8.9 75 18-94 161-250 (763)
360 KOG1486|consensus 94.1 0.2 4.3E-06 33.5 5.2 50 16-65 102-158 (364)
361 PF00735 Septin: Septin; Inte 93.9 0.37 8.1E-06 32.5 6.4 44 46-94 113-156 (281)
362 cd02036 MinD Bacterial cell di 93.8 0.71 1.5E-05 28.4 7.3 65 24-94 64-128 (179)
363 PF03308 ArgK: ArgK protein; 93.7 0.021 4.6E-07 37.9 0.3 94 21-126 120-216 (266)
364 COG1703 ArgK Putative periplas 93.5 0.45 9.7E-06 32.5 6.1 94 21-126 142-240 (323)
365 TIGR03348 VI_IcmF type VI secr 93.1 0.3 6.5E-06 39.4 5.7 70 24-94 162-257 (1169)
366 PF05783 DLIC: Dynein light in 93.0 0.81 1.8E-05 33.3 7.2 57 4-60 48-114 (472)
367 PRK09601 GTP-binding protein Y 92.9 0.49 1.1E-05 33.2 5.9 34 24-57 67-107 (364)
368 PRK10463 hydrogenase nickel in 92.8 0.076 1.6E-06 35.9 1.8 44 80-126 230-275 (290)
369 COG5019 CDC3 Septin family pro 92.6 1.3 2.8E-05 31.1 7.4 82 7-94 62-176 (373)
370 TIGR01425 SRP54_euk signal rec 92.5 0.68 1.5E-05 33.3 6.2 67 21-94 181-253 (429)
371 cd03114 ArgK-like The function 92.4 0.64 1.4E-05 28.2 5.4 34 21-57 90-123 (148)
372 TIGR00064 ftsY signal recognit 92.1 0.96 2.1E-05 30.4 6.3 68 21-95 153-232 (272)
373 cd03115 SRP The signal recogni 92.0 1.8 4E-05 26.6 7.5 67 21-94 81-153 (173)
374 KOG2423|consensus 91.8 0.43 9.3E-06 34.0 4.5 48 44-94 211-258 (572)
375 COG0378 HypB Ni2+-binding GTPa 91.6 0.096 2.1E-06 33.4 1.1 87 23-126 97-187 (202)
376 TIGR03371 cellulose_yhjQ cellu 91.3 1.6 3.5E-05 28.4 6.7 67 24-94 116-182 (246)
377 KOG0780|consensus 91.2 1.7 3.7E-05 31.0 6.9 52 21-72 182-239 (483)
378 PHA02518 ParA-like protein; Pr 90.8 2.6 5.7E-05 26.6 7.3 67 21-92 75-145 (211)
379 COG1149 MinD superfamily P-loo 90.8 3.1 6.7E-05 28.1 7.5 66 23-95 164-229 (284)
380 TIGR01007 eps_fam capsular exo 90.3 3.2 7E-05 26.3 7.3 69 21-94 126-194 (204)
381 cd02037 MRP-like MRP (Multiple 89.3 3.5 7.7E-05 25.3 8.0 67 21-92 66-133 (169)
382 PRK13185 chlL protochlorophyll 88.8 1.8 3.9E-05 28.8 5.5 69 21-91 116-185 (270)
383 KOG0781|consensus 88.5 5.6 0.00012 29.3 7.8 73 21-94 465-544 (587)
384 TIGR01969 minD_arch cell divis 88.5 3.3 7.2E-05 27.0 6.5 66 21-93 107-173 (251)
385 TIGR01968 minD_bact septum sit 88.1 3.9 8.4E-05 26.8 6.7 66 21-92 110-175 (261)
386 CHL00175 minD septum-site dete 88.1 3.5 7.7E-05 27.6 6.5 65 22-92 126-190 (281)
387 cd02032 Bchl_like This family 87.9 2.3 5.1E-05 28.2 5.6 70 21-92 114-184 (267)
388 PRK14974 cell division protein 87.8 2.7 5.9E-05 29.3 5.9 68 21-95 221-294 (336)
389 PF14331 ImcF-related_N: ImcF- 87.4 1.1 2.4E-05 30.0 3.8 48 46-94 25-83 (266)
390 COG0523 Putative GTPases (G3E 87.1 5.4 0.00012 27.7 7.0 68 23-96 85-161 (323)
391 TIGR00959 ffh signal recogniti 86.4 2.8 6E-05 30.2 5.5 67 21-94 181-253 (428)
392 cd02042 ParA ParA and ParB of 86.1 4.2 9.1E-05 22.6 6.4 45 23-70 40-84 (104)
393 PRK10416 signal recognition pa 85.9 4.3 9.3E-05 28.1 6.0 67 21-94 195-273 (318)
394 cd02117 NifH_like This family 85.4 4.2 9.1E-05 26.0 5.6 72 21-93 115-188 (212)
395 PRK13849 putative crown gall t 85.2 5.1 0.00011 26.3 5.9 68 21-91 82-151 (231)
396 COG0552 FtsY Signal recognitio 84.9 7.5 0.00016 27.2 6.7 64 21-92 220-296 (340)
397 PRK00771 signal recognition pa 84.9 7.4 0.00016 28.3 7.0 66 22-94 175-246 (437)
398 PRK09602 translation-associate 84.6 1.4 3E-05 31.4 3.3 40 79-125 216-255 (396)
399 COG0541 Ffh Signal recognition 84.3 9.3 0.0002 27.7 7.1 65 21-92 181-251 (451)
400 PF00448 SRP54: SRP54-type pro 83.6 9.2 0.0002 24.4 6.5 67 21-94 82-154 (196)
401 CHL00072 chlL photochlorophyll 83.3 7.2 0.00016 26.5 6.2 66 22-92 115-184 (290)
402 TIGR02475 CobW cobalamin biosy 82.6 7.1 0.00015 27.3 6.1 36 23-58 93-135 (341)
403 PRK10818 cell division inhibit 81.5 10 0.00023 25.1 6.4 69 22-93 113-186 (270)
404 TIGR01281 DPOR_bchL light-inde 80.9 6.1 0.00013 26.2 5.2 71 21-93 114-185 (268)
405 PF01656 CbiA: CobQ/CobB/MinD/ 80.8 5.1 0.00011 24.9 4.6 68 23-94 95-162 (195)
406 KOG4273|consensus 80.6 1.7 3.8E-05 29.1 2.4 47 45-94 77-123 (418)
407 COG3523 IcmF Type VI protein s 80.2 6.5 0.00014 32.2 5.7 72 22-94 173-270 (1188)
408 KOG2486|consensus 80.0 2.2 4.8E-05 29.0 2.8 69 21-94 181-262 (320)
409 KOG2485|consensus 79.9 5.7 0.00012 27.5 4.7 50 40-96 40-89 (335)
410 PF07015 VirC1: VirC1 protein; 79.9 7.2 0.00016 25.8 5.0 69 22-93 83-153 (231)
411 PRK10867 signal recognition pa 79.5 15 0.00032 26.7 6.9 67 21-94 182-254 (433)
412 PF02492 cobW: CobW/HypB/UreG, 79.2 2.8 6E-05 26.2 3.0 67 22-95 84-156 (178)
413 PF10087 DUF2325: Uncharacteri 79.2 8.8 0.00019 21.3 5.7 46 34-86 36-81 (97)
414 COG0012 Predicted GTPase, prob 78.3 4.6 0.0001 28.5 4.0 36 23-58 67-109 (372)
415 PRK11537 putative GTP-binding 77.8 11 0.00023 26.2 5.6 66 23-95 91-165 (318)
416 PRK14722 flhF flagellar biosyn 75.6 18 0.00039 25.8 6.3 74 21-94 214-295 (374)
417 KOG1547|consensus 75.0 23 0.0005 24.0 6.8 43 46-94 155-198 (336)
418 PRK13505 formate--tetrahydrofo 74.4 6.2 0.00013 29.5 3.9 17 79-95 371-387 (557)
419 TIGR03815 CpaE_hom_Actino heli 74.1 26 0.00056 24.1 7.9 78 21-106 203-280 (322)
420 TIGR01005 eps_transp_fam exopo 73.4 26 0.00057 27.2 7.3 69 21-94 654-722 (754)
421 TIGR00092 GTP-binding protein 73.4 17 0.00037 25.8 5.8 35 23-57 67-108 (368)
422 PF05783 DLIC: Dynein light in 73.4 2.6 5.7E-05 30.8 1.9 46 80-125 196-249 (472)
423 KOG2655|consensus 73.0 31 0.00067 24.6 7.7 81 9-95 61-173 (366)
424 cd02035 ArsA ArsA ATPase funct 72.7 23 0.00049 22.8 6.9 67 23-93 114-183 (217)
425 PRK12727 flagellar biosynthesi 72.4 23 0.0005 26.7 6.4 66 21-94 427-498 (559)
426 TIGR03029 EpsG chain length de 72.0 26 0.00057 23.3 6.8 51 21-73 211-261 (274)
427 cd02040 NifH NifH gene encodes 69.9 19 0.00042 23.7 5.3 69 21-90 115-185 (270)
428 cd07393 MPP_DR1119 Deinococcus 67.9 22 0.00048 23.2 5.2 46 43-92 38-83 (232)
429 COG0012 Predicted GTPase, prob 66.1 12 0.00026 26.6 3.8 40 79-123 205-247 (372)
430 PRK06731 flhF flagellar biosyn 65.9 39 0.00085 22.9 6.4 66 22-94 154-225 (270)
431 PRK05703 flhF flagellar biosyn 65.7 49 0.0011 24.0 7.0 67 21-94 298-371 (424)
432 KOG1487|consensus 65.6 7.9 0.00017 26.4 2.7 48 18-65 101-155 (358)
433 PF14784 ECIST_Cterm: C-termin 64.6 24 0.00052 21.0 4.3 41 45-85 82-123 (126)
434 PRK13235 nifH nitrogenase redu 64.3 30 0.00066 23.1 5.4 70 21-91 116-187 (274)
435 cd01851 GBP Guanylate-binding 64.1 37 0.00081 22.1 5.9 53 8-60 42-105 (224)
436 PRK12726 flagellar biosynthesi 63.4 49 0.0011 24.0 6.3 66 22-94 285-356 (407)
437 PF11111 CENP-M: Centromere pr 63.0 34 0.00074 21.7 5.0 29 46-74 64-92 (176)
438 TIGR00381 cdhD CO dehydrogenas 60.6 61 0.0013 23.4 7.0 41 45-88 152-196 (389)
439 COG2403 Predicted GTPase [Gene 59.9 60 0.0013 23.5 6.2 82 4-101 198-289 (449)
440 cd01983 Fer4_NifH The Fer4_Nif 59.8 25 0.00053 18.6 6.5 64 24-88 35-99 (99)
441 KOG2743|consensus 59.3 57 0.0012 23.0 5.9 37 21-57 144-188 (391)
442 KOG1201|consensus 58.6 59 0.0013 22.5 7.1 51 21-72 61-111 (300)
443 PRK11889 flhF flagellar biosyn 57.4 74 0.0016 23.3 6.4 66 22-94 320-391 (436)
444 PF10718 Ycf34: Hypothetical c 57.0 9.7 0.00021 20.5 1.6 36 3-39 33-68 (77)
445 PRK13233 nifH nitrogenase redu 53.7 40 0.00088 22.5 4.6 68 21-90 117-187 (275)
446 PRK13660 hypothetical protein; 53.5 57 0.0012 20.8 5.8 49 35-86 118-166 (182)
447 COG5192 BMS1 GTP-binding prote 53.4 1E+02 0.0022 23.9 6.7 96 21-123 111-209 (1077)
448 TIGR01287 nifH nitrogenase iro 53.0 37 0.0008 22.6 4.4 48 21-69 114-162 (275)
449 PRK14723 flhF flagellar biosyn 51.6 55 0.0012 25.9 5.4 69 21-94 262-337 (767)
450 PF13667 ThiC-associated: ThiC 50.4 14 0.00031 20.1 1.7 26 8-33 15-50 (80)
451 KOG1491|consensus 50.0 28 0.00061 24.7 3.4 36 23-58 84-126 (391)
452 PRK13236 nitrogenase reductase 49.3 65 0.0014 22.0 5.1 72 21-93 120-193 (296)
453 PRK13234 nifH nitrogenase redu 49.2 55 0.0012 22.3 4.7 69 21-90 118-188 (295)
454 cd07379 MPP_239FB Homo sapiens 49.1 53 0.0011 19.2 5.5 35 25-64 3-37 (135)
455 PRK12723 flagellar biosynthesi 49.0 99 0.0021 22.3 6.7 67 21-94 253-326 (388)
456 COG1419 FlhF Flagellar GTP-bin 48.4 89 0.0019 22.7 5.7 68 21-95 280-353 (407)
457 cd07388 MPP_Tt1561 Thermus the 47.9 78 0.0017 20.8 6.6 64 25-92 8-74 (224)
458 PRK13230 nitrogenase reductase 47.9 47 0.001 22.3 4.2 47 22-69 116-163 (279)
459 KOG1534|consensus 47.6 26 0.00056 23.3 2.7 75 24-102 99-186 (273)
460 COG1010 CobJ Precorrin-3B meth 47.5 85 0.0018 21.1 6.0 48 42-90 150-197 (249)
461 KOG0052|consensus 46.4 18 0.00038 25.9 2.0 72 21-94 80-156 (391)
462 TIGR03018 pepcterm_TyrKin exop 44.7 81 0.0018 20.1 5.9 47 24-72 150-196 (207)
463 PF03709 OKR_DC_1_N: Orn/Lys/A 43.7 64 0.0014 18.6 4.1 43 45-90 35-77 (115)
464 PRK12724 flagellar biosynthesi 43.4 69 0.0015 23.5 4.6 67 21-94 298-373 (432)
465 COG4502 5'(3')-deoxyribonucleo 43.1 79 0.0017 19.5 5.4 42 47-90 84-125 (180)
466 COG1358 RPL8A Ribosomal protei 42.2 33 0.00072 20.1 2.5 42 46-94 43-84 (116)
467 COG2129 Predicted phosphoester 42.0 1E+02 0.0022 20.5 6.3 66 25-94 7-78 (226)
468 PRK13232 nifH nitrogenase redu 41.7 85 0.0018 20.9 4.7 69 21-91 115-185 (273)
469 TIGR02016 BchX chlorophyllide 38.8 1.3E+02 0.0028 20.6 5.3 69 22-92 122-194 (296)
470 PRK13705 plasmid-partitioning 38.7 1.1E+02 0.0024 21.9 5.1 70 21-94 233-308 (388)
471 KOG4530|consensus 37.6 1.1E+02 0.0023 19.4 5.8 46 38-88 78-126 (199)
472 PF05014 Nuc_deoxyrib_tr: Nucl 36.6 83 0.0018 17.8 4.7 45 42-92 57-101 (113)
473 COG4474 Uncharacterized protei 35.9 1.2E+02 0.0025 19.3 5.3 31 36-66 119-149 (180)
474 PRK10037 cell division protein 34.9 62 0.0014 21.3 3.2 35 21-57 116-150 (250)
475 PF12098 DUF3574: Protein of u 34.3 32 0.0007 19.7 1.5 31 25-55 38-68 (104)
476 KOG2733|consensus 34.2 1.4E+02 0.003 21.6 4.8 20 48-67 63-82 (423)
477 PF00532 Peripla_BP_1: Peripla 33.1 1.5E+02 0.0033 19.9 5.8 62 21-93 30-92 (279)
478 PRK13869 plasmid-partitioning 32.8 1.9E+02 0.0041 20.9 6.9 71 21-94 250-328 (405)
479 cd07390 MPP_AQ1575 Aquifex aeo 32.7 1.2E+02 0.0026 18.6 4.9 45 40-90 36-80 (168)
480 PRK13695 putative NTPase; Prov 32.6 1.2E+02 0.0026 18.6 5.3 43 42-91 92-137 (174)
481 PF13401 AAA_22: AAA domain; P 32.5 1E+02 0.0022 17.5 4.2 43 43-89 82-125 (131)
482 PRK14721 flhF flagellar biosyn 31.5 1.8E+02 0.004 21.3 5.2 67 21-94 268-340 (420)
483 PF14606 Lipase_GDSL_3: GDSL-l 30.8 1.5E+02 0.0032 18.9 5.8 63 24-87 35-100 (178)
484 PF06901 FrpC: RTX iron-regula 29.9 98 0.0021 20.1 3.3 25 3-27 47-72 (271)
485 PRK13556 azoreductase; Provisi 29.6 1.6E+02 0.0034 18.9 4.8 47 42-88 85-143 (208)
486 KOG0463|consensus 28.5 2E+02 0.0043 21.1 4.8 66 50-126 279-344 (641)
487 KOG0446|consensus 28.2 9.2 0.0002 29.3 -1.7 71 21-94 130-213 (657)
488 PRK13231 nitrogenase reductase 27.8 1.9E+02 0.004 19.2 5.5 50 21-71 112-162 (264)
489 KOG3947|consensus 27.7 2.1E+02 0.0046 19.8 5.1 62 23-90 63-124 (305)
490 PRK09841 cryptic autophosphory 27.6 3.1E+02 0.0067 21.6 7.2 69 21-94 639-707 (726)
491 PF00710 Asparaginase: Asparag 26.9 2.2E+02 0.0048 19.7 5.0 47 41-93 67-113 (313)
492 KOG1752|consensus 26.7 1.3E+02 0.0029 17.2 3.6 40 46-90 38-77 (104)
493 COG3967 DltE Short-chain dehyd 26.7 1.7E+02 0.0038 19.5 4.0 32 40-71 43-74 (245)
494 PF09827 CRISPR_Cas2: CRISPR a 26.1 67 0.0015 16.9 1.9 25 49-73 3-27 (78)
495 PRK11148 cyclic 3',5'-adenosin 25.8 1.6E+02 0.0034 19.8 4.0 42 46-92 55-97 (275)
496 TIGR03453 partition_RepA plasm 25.7 2.5E+02 0.0055 20.0 5.2 35 21-57 233-267 (387)
497 PF07808 RED_N: RED-like prote 25.7 89 0.0019 20.8 2.7 33 47-95 169-201 (238)
498 COG0455 flhG Antiactivator of 24.9 2.3E+02 0.0049 19.2 6.8 63 24-91 114-177 (262)
499 TIGR02690 resist_ArsH arsenica 24.8 1.8E+02 0.0039 19.2 3.9 49 40-88 84-136 (219)
500 PHA02519 plasmid partition pro 23.6 2.9E+02 0.0062 19.9 5.5 69 21-93 233-307 (387)
No 1
>KOG0084|consensus
Probab=99.98 E-value=9.8e-33 Score=168.94 Aligned_cols=119 Identities=22% Similarity=0.261 Sum_probs=98.6
Q ss_pred CCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
.|. .|..|||+.+ +++.+ +.+++++|||+|||+|+.+..+|+++|||+|+|||+++.+||..+..|+.++-+. .
T Consensus 33 ~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~ 111 (205)
T KOG0084|consen 33 TFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY-A 111 (205)
T ss_pred CcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh-c
Confidence 345 7899999665 55555 6689999999999999999999999999999999999999999999999888654 4
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceE-EEEeeeeeC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWH-IQSCCALTG 125 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~ 125 (126)
..++|+++||||+|+... ..+....++.++...+++ ++++|||++
T Consensus 112 ~~~v~~lLVGNK~Dl~~~---~~v~~~~a~~fa~~~~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 112 SENVPKLLVGNKCDLTEK---RVVSTEEAQEFADELGIPIFLETSAKDS 157 (205)
T ss_pred cCCCCeEEEeeccccHhh---eecCHHHHHHHHHhcCCcceeecccCCc
Confidence 477899999999999764 333344445566667777 999999975
No 2
>KOG0092|consensus
Probab=99.97 E-value=9.6e-32 Score=164.05 Aligned_cols=121 Identities=24% Similarity=0.350 Sum_probs=100.5
Q ss_pred CCCccc-CCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVVHT-SPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~~~-~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|+|..+ .||||.. .+++.+ ..++|.||||+|||+|..+.+.|+++|+++|+|||+++.+||..++.|++++.+.-
T Consensus 28 ~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~ 107 (200)
T KOG0092|consen 28 DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA 107 (200)
T ss_pred CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC
Confidence 677754 8999944 456666 45899999999999999999999999999999999999999999999999986654
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
. +++-+.++|||+||... +++.......++...++.|+++|||+|.
T Consensus 108 ~-~~~vialvGNK~DL~~~---R~V~~~ea~~yAe~~gll~~ETSAKTg~ 153 (200)
T KOG0092|consen 108 S-PNIVIALVGNKADLLER---REVEFEEAQAYAESQGLLFFETSAKTGE 153 (200)
T ss_pred C-CCeEEEEecchhhhhhc---ccccHHHHHHHHHhcCCEEEEEeccccc
Confidence 4 88899999999999873 3333444455566778899999999973
No 3
>KOG0070|consensus
Probab=99.97 E-value=5.9e-30 Score=155.55 Aligned_cols=126 Identities=52% Similarity=0.908 Sum_probs=120.0
Q ss_pred CCCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 1 ~~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
+||+.++.||+|++...+.++++.|.+||.+||+++++.|.+|+++++++|||+|.++++.+.+++..+..++......+
T Consensus 39 ~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~ 118 (181)
T KOG0070|consen 39 LGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRN 118 (181)
T ss_pred cCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999877789
Q ss_pred CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|+++++||.|++++.+..++...+++.....+.+.+..|||.+|+
T Consensus 119 ~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 119 APLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred ceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 9999999999999998889999999988888899999999999885
No 4
>KOG0094|consensus
Probab=99.97 E-value=1.5e-30 Score=159.24 Aligned_cols=118 Identities=19% Similarity=0.336 Sum_probs=103.9
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.|.+|||+.+ +++.+ ..+.+++|||+|||+|+.+.+.|++++.++|+|||+++.++|++..+|++.+...++..++
T Consensus 50 ~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v 129 (221)
T KOG0094|consen 50 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV 129 (221)
T ss_pred cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce
Confidence 7999999665 66666 5578999999999999999999999999999999999999999999999999988876678
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
-+++||||.||.+. +++....+...++..+..|.++||+.|.
T Consensus 130 iI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~ 171 (221)
T KOG0094|consen 130 IIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGE 171 (221)
T ss_pred EEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCC
Confidence 99999999999875 5666666666667778899999999884
No 5
>KOG0075|consensus
Probab=99.96 E-value=7.9e-29 Score=145.54 Aligned_cols=124 Identities=25% Similarity=0.511 Sum_probs=116.9
Q ss_pred CCCc-ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 2 NEVV-HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
|++. ...||+|++.+.++-+.+.+.+||.+||.+|+.+|+.|++++++++||+|+.+++.+...+..+..++..+.+.+
T Consensus 43 g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~g 122 (186)
T KOG0075|consen 43 GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTG 122 (186)
T ss_pred ccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcC
Confidence 4566 566999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+|++++|||.|++++.+..++.+.+++.....+++.+|.+|+++.
T Consensus 123 ip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~ 167 (186)
T KOG0075|consen 123 IPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEK 167 (186)
T ss_pred CcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence 999999999999998888889999999999999999999999864
No 6
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=5.8e-28 Score=149.43 Aligned_cols=125 Identities=43% Similarity=0.843 Sum_probs=106.9
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+++..+.||+|+....+....+.+++|||+|+++++.+|+.+++.++++++|+|++++.+++++..++...++....+++
T Consensus 32 ~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~ 111 (168)
T cd04149 32 GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDA 111 (168)
T ss_pred CCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCC
Confidence 46677899999888777778899999999999999999999999999999999999999999999999888776444679
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+....+++.+.+.......+.+.++++||++|+
T Consensus 112 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 112 LLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred cEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 999999999997655567777776655555566789999999984
No 7
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=5.1e-28 Score=151.28 Aligned_cols=125 Identities=48% Similarity=0.881 Sum_probs=108.0
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
|++..+.||+|++...+..+++.+++||++|+++++.+|..++++++++++|+|+++++++.++..++..++.....+++
T Consensus 40 ~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~ 119 (181)
T PLN00223 40 GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
T ss_pred CCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCC
Confidence 56778899999988888889999999999999999999999999999999999999999999999888888766555689
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+....+++...++......+.+.+++|||++|+
T Consensus 120 piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCC
Confidence 999999999998776667777776655445566778899999985
No 8
>KOG0078|consensus
Probab=99.96 E-value=1.7e-29 Score=156.52 Aligned_cols=119 Identities=19% Similarity=0.288 Sum_probs=100.0
Q ss_pred CCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
.|. .+..|+|+.+ +++.+ ..+.+++|||+||++|+.+...|+++|.++++|||+++..+|+++..|+..+-+. .
T Consensus 36 ~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~-a 114 (207)
T KOG0078|consen 36 SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEH-A 114 (207)
T ss_pred cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhh-C
Confidence 345 7889999665 55666 5578999999999999999999999999999999999999999999987777554 4
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
..++|+++||||+|+... +++....++..+...++.++|+|||+|
T Consensus 115 ~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~ 159 (207)
T KOG0078|consen 115 SDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTN 159 (207)
T ss_pred CCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCC
Confidence 468999999999999763 455555566666777899999999987
No 9
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=6.8e-28 Score=147.89 Aligned_cols=125 Identities=49% Similarity=0.885 Sum_probs=105.9
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
|++..+.||+|+....+..+.+.+.+|||+|++++..+|..++++++++++|+|++++.++.++.+++..+++.....+.
T Consensus 23 ~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 102 (159)
T cd04150 23 GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDA 102 (159)
T ss_pred CCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCC
Confidence 56777899999888878889999999999999999999999999999999999999999999999988888765444578
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+....+++...+.......+.+.++++||++|.
T Consensus 103 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~ 147 (159)
T cd04150 103 VLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGD 147 (159)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence 999999999997655555666666555555667788999999984
No 10
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=9.4e-28 Score=149.36 Aligned_cols=125 Identities=50% Similarity=0.884 Sum_probs=108.5
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
|++..+.||+|+....+..+.+.+.+|||+|++.++.+|..++++++++++|+|++++++++++..++..+++....+++
T Consensus 36 ~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~ 115 (175)
T smart00177 36 GESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDA 115 (175)
T ss_pred CCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCC
Confidence 56677899999888888888999999999999999999999999999999999999999999999999888765444679
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+....+++.+.++......+.+.++++||++|+
T Consensus 116 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 116 VILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred cEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 999999999998766667777777766666677888899999884
No 11
>KOG0087|consensus
Probab=99.96 E-value=3.4e-29 Score=154.91 Aligned_cols=120 Identities=25% Similarity=0.332 Sum_probs=102.4
Q ss_pred CCCc-ccCCccCceEEE--EEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNVEE--VIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
++|. +..+|||+.+.+ +.+ +.++.+||||+|||+|+.....|+++|.|+++|||+++..+|+.+..|+.++...
T Consensus 37 nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdh- 115 (222)
T KOG0087|consen 37 NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDH- 115 (222)
T ss_pred cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhc-
Confidence 5777 888999966654 555 6689999999999999999999999999999999999999999999999988655
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
..++++++++|||+||... +.+....+..++...++.++++||+++
T Consensus 116 ad~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 116 ADSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDA 161 (222)
T ss_pred CCCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEeccccc
Confidence 4479999999999999763 455566666777777889999999875
No 12
>KOG0071|consensus
Probab=99.96 E-value=2e-27 Score=138.70 Aligned_cols=126 Identities=44% Similarity=0.853 Sum_probs=118.5
Q ss_pred CCCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 1 ~~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
+|......||+||+.+++.++++.|.+||.+|+++.++.|++|+.+..++|||+|+.+++..++++..+..+++.+...+
T Consensus 39 l~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~ 118 (180)
T KOG0071|consen 39 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRD 118 (180)
T ss_pred cCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhc
Confidence 46667889999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|+++..||+|++....+.++...+.+..++.+.+-+..+||.+|+
T Consensus 119 ~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gd 164 (180)
T KOG0071|consen 119 AIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGD 164 (180)
T ss_pred ceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccch
Confidence 9999999999999988889999999988888899999999998874
No 13
>KOG0098|consensus
Probab=99.95 E-value=8.9e-29 Score=150.46 Aligned_cols=117 Identities=26% Similarity=0.334 Sum_probs=103.3
Q ss_pred ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
-+..|+|+. .+.+++ +.+++++|||+|||.|+.....|++.|.|+++|||++++++|..+..|+..+.+.. .++.
T Consensus 34 ~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~Nm 112 (216)
T KOG0098|consen 34 VHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENM 112 (216)
T ss_pred cccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCc
Confidence 456899944 567777 67999999999999999999999999999999999999999999999999886653 4789
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+++++||+||... ++|..++++.++++.++.++++||++++
T Consensus 113 vImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~ 154 (216)
T KOG0098|consen 113 VIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAE 154 (216)
T ss_pred EEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhh
Confidence 99999999999764 5778888888998999999999999874
No 14
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=7.1e-27 Score=146.23 Aligned_cols=125 Identities=51% Similarity=0.899 Sum_probs=107.5
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
|++..+.||+|.+...+.++++.+.+|||+|+++++.+|..++++++++++|+|+++++++.....++..+++.....+.
T Consensus 40 ~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~ 119 (182)
T PTZ00133 40 GEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDA 119 (182)
T ss_pred CCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCC
Confidence 56777889999888888889999999999999999999999999999999999999999999999888888765444678
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+......+++...++....+.+.+.++++||++|+
T Consensus 120 piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 120 VLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred CEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 999999999997765666777777766566667788899999884
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=1.4e-27 Score=151.41 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=92.2
Q ss_pred CCCc-ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|.|. +|.||+|.. .+.+.+++ +.+++|||+|+++|+.++..|+++++++++|||++++++|+.+..|+..+ +..
T Consensus 23 ~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i-~~~ 101 (202)
T cd04120 23 DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI-DKY 101 (202)
T ss_pred CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHh
Confidence 4565 678999844 45677754 88999999999999999999999999999999999999999999887655 333
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK-QQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~ 126 (126)
...++|+++++||+|+.... ++.......+++. .++.+++|||++|.
T Consensus 102 ~~~~~piilVgNK~DL~~~~---~v~~~~~~~~a~~~~~~~~~etSAktg~ 149 (202)
T cd04120 102 ASEDAELLLVGNKLDCETDR---EISRQQGEKFAQQITGMRFCEASAKDNF 149 (202)
T ss_pred CCCCCcEEEEEECccccccc---ccCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 34679999999999996431 1222222222222 25689999999984
No 16
>KOG0079|consensus
Probab=99.95 E-value=2.2e-28 Score=143.98 Aligned_cols=118 Identities=23% Similarity=0.256 Sum_probs=99.7
Q ss_pred CCc-ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
.|. .|..|+|+. .+++.+ +.++++||||+|+|+|+.+...|+++.+++++|||.++.+||.+.++|++++-++.
T Consensus 32 tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc- 110 (198)
T KOG0079|consen 32 TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC- 110 (198)
T ss_pred ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-
Confidence 455 899999955 466666 66899999999999999999999999999999999999999999999999997665
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+..|-++||||.|.++- ..+....+..++...++++|++|||++
T Consensus 111 -dsv~~vLVGNK~d~~~R---rvV~t~dAr~~A~~mgie~FETSaKe~ 154 (198)
T KOG0079|consen 111 -DSVPKVLVGNKNDDPER---RVVDTEDARAFALQMGIELFETSAKEN 154 (198)
T ss_pred -ccccceecccCCCCccc---eeeehHHHHHHHHhcCchheehhhhhc
Confidence 58899999999998762 233344445666778899999999976
No 17
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.7e-27 Score=148.23 Aligned_cols=119 Identities=19% Similarity=0.324 Sum_probs=93.6
Q ss_pred CCCc-ccCCccCceEE--EEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNVE--EVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|.|. +|.||+|.... .+.+ +.+.+.||||+|++++..++..++++|+++++|||++++++|+.+..|+..+.+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 5676 78999996654 4555 45889999999999999999999999999999999999999999999888887653
Q ss_pred CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
. +++|+++|+||+|+... ...++. .......+..+++|||++|+
T Consensus 83 ~-~~~piilVgNK~DL~~~~~v~~~e~-----~~~~~~~~~~~~e~SAk~g~ 128 (176)
T PTZ00099 83 G-KDVIIALVGNKTDLGDLRKVTYEEG-----MQKAQEYNTMFHETSAKAGH 128 (176)
T ss_pred C-CCCeEEEEEECcccccccCCCHHHH-----HHHHHHcCCEEEEEECCCCC
Confidence 2 57899999999999642 222222 12223345678999999884
No 18
>KOG0093|consensus
Probab=99.94 E-value=1.1e-27 Score=140.88 Aligned_cols=116 Identities=21% Similarity=0.286 Sum_probs=96.3
Q ss_pred ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
-+..|+|+.++.-.+ +.+++++|||+|+|+++.+--.|++++.++++|+|+++.++|..+..|.-++ +...+.++
T Consensus 49 afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqI-ktysw~na 127 (193)
T KOG0093|consen 49 AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQI-KTYSWDNA 127 (193)
T ss_pred ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHh-eeeeccCc
Confidence 567899977766565 7799999999999999999999999999999999999999999999987766 44466899
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
|++++|||||+..+ +.+..+.++..+.+.++.+||+|||.+
T Consensus 128 qvilvgnKCDmd~e---Rvis~e~g~~l~~~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 128 QVILVGNKCDMDSE---RVISHERGRQLADQLGFEFFETSAKEN 168 (193)
T ss_pred eEEEEecccCCccc---eeeeHHHHHHHHHHhChHHhhhccccc
Confidence 99999999999875 333344444555666778999999976
No 19
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.94 E-value=1.8e-25 Score=138.13 Aligned_cols=120 Identities=32% Similarity=0.613 Sum_probs=102.9
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
++.||+|+....+.+++..+++||++|++.++.+|..+++.++++++|+|++++.++.++..|+..+++.....++|+++
T Consensus 26 ~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pili 105 (167)
T cd04161 26 KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILV 105 (167)
T ss_pred cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEE
Confidence 78999999888888899999999999999999999999999999999999999999999999999887765556899999
Q ss_pred EEecCCCCCCCCHHHHHhhcCcCcc-c--CCceEEEEeeeeeC
Q psy6566 86 YANKQDIKNSMSPVEISNLLDLTSI-K--KQQWHIQSCCALTG 125 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~~~~~~-~--~~~~~~~~~Sa~~~ 125 (126)
++||+|+.+..+..++.+.+..... + ...+.+++|||++|
T Consensus 106 v~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 106 LANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred EEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 9999999887666666666554432 2 23578899999987
No 20
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=3.3e-26 Score=142.38 Aligned_cols=125 Identities=46% Similarity=0.810 Sum_probs=113.3
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+++..+.||+|++...+.+++..+.+||.+|+..++..|+.|++++++++||+|+++++.+.+++..+..++......+.
T Consensus 37 ~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~ 116 (175)
T PF00025_consen 37 GEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDI 116 (175)
T ss_dssp SSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTS
T ss_pred ccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccc
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999988766789
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCccc-CCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIK-KQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+++.....++...+...... .+.+.++.|||++|+
T Consensus 117 piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 117 PILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp EEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred eEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 999999999999887888888887766664 788999999999884
No 21
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=8.6e-27 Score=146.48 Aligned_cols=119 Identities=13% Similarity=0.212 Sum_probs=92.9
Q ss_pred CCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
++. ++.||++... ..+.+++ +.+++|||+|++++..+++.++++++++++|||++++.+|+++..|+..+.+..
T Consensus 30 ~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~- 108 (189)
T cd04121 30 STESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA- 108 (189)
T ss_pred CCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-
Confidence 444 6678888544 4555544 789999999999999999999999999999999999999999999888885543
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++.|++++|||+|+.... .+.....+.+++..++++++|||++|.
T Consensus 109 -~~~piilVGNK~DL~~~~---~v~~~~~~~~a~~~~~~~~e~SAk~g~ 153 (189)
T cd04121 109 -PGVPKILVGNRLHLAFKR---QVATEQAQAYAERNGMTFFEVSPLCNF 153 (189)
T ss_pred -CCCCEEEEEECccchhcc---CCCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 689999999999996531 111222233344567789999999884
No 22
>KOG0394|consensus
Probab=99.94 E-value=2.7e-27 Score=143.73 Aligned_cols=119 Identities=19% Similarity=0.249 Sum_probs=96.7
Q ss_pred ccCCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC---C
Q psy6566 6 HTSPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED---L 78 (126)
Q Consensus 6 ~~~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~---~ 78 (126)
+|..||| +-.+.+.+ ..+.++||||+|||+|+++.-.++++||.++++||++++++|+.+..|..+++.... .
T Consensus 37 qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~P 116 (210)
T KOG0394|consen 37 QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDP 116 (210)
T ss_pred HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCC
Confidence 8899999 44577777 447899999999999999999999999999999999999999999999999987633 2
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTG 125 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~ 125 (126)
...|++++|||+|+.+..+ ..+....++.+. ..++++|||+|||.+
T Consensus 117 e~FPFVilGNKiD~~~~~~-r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 117 ETFPFVILGNKIDVDGGKS-RQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred CcccEEEEcccccCCCCcc-ceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 3679999999999976321 333343344444 456899999999975
No 23
>KOG0080|consensus
Probab=99.94 E-value=1.7e-27 Score=141.97 Aligned_cols=119 Identities=24% Similarity=0.316 Sum_probs=99.6
Q ss_pred CcccCCc-cCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 4 VVHTSPT-IGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 4 ~~~~~pT-i~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
|.+..|| ||+. .+.+++ +..++.||||+|||+|+.+-++|+++|.++|+|||++.+++|..+..|++++-.....
T Consensus 36 fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn 115 (209)
T KOG0080|consen 36 FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN 115 (209)
T ss_pred cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC
Confidence 4445555 9955 466666 5578999999999999999999999999999999999999999998888887665555
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+++-.++|+||+|..++ +.+...++..+++....-|++||||+.
T Consensus 116 ~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 116 PDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTR 159 (209)
T ss_pred ccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhh
Confidence 78889999999996542 567777788888888889999999975
No 24
>KOG0086|consensus
Probab=99.94 E-value=1.2e-26 Score=137.45 Aligned_cols=117 Identities=26% Similarity=0.354 Sum_probs=98.4
Q ss_pred ccCCccCc--eEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGS--NVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+...|||+ ..+.+.+ +.++++||||+|||+|+...+.|+++|.+.++|+|++++++|+.+..|+...- .-..+++
T Consensus 37 dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR-~lAs~nI 115 (214)
T KOG0086|consen 37 DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDAR-TLASPNI 115 (214)
T ss_pred cccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHH-hhCCCcE
Confidence 44578884 4566777 66899999999999999999999999999999999999999999999987763 3345899
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
-+++++||.||.++ +++.-.....+++.+++.+.++||++|+
T Consensus 116 vviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGe 157 (214)
T KOG0086|consen 116 VVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGE 157 (214)
T ss_pred EEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccc
Confidence 99999999999875 4555555566677888899999999985
No 25
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=3.1e-25 Score=135.80 Aligned_cols=125 Identities=50% Similarity=0.850 Sum_probs=101.9
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+++..+.||++++...+.++++.+++|||||++.+..+|+.+++.++++++|+|++++.++.....++..+++.....+.
T Consensus 22 ~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (158)
T cd04151 22 GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGA 101 (158)
T ss_pred CCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence 34556789999888888888999999999999999999999999999999999999988888777777776665444679
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+.....++...+........+++++++||++|.
T Consensus 102 piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd04151 102 VLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGE 146 (158)
T ss_pred cEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCC
Confidence 999999999997654455666655544444556789999999874
No 26
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=7.1e-27 Score=146.13 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=93.3
Q ss_pred CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~ 76 (126)
|.|. +|.||++... ..+.+ +.+.+++|||+|+++|..+++.++++++++++|||++++.+|+.+ ..|+..+.+..
T Consensus 28 ~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~ 107 (182)
T cd04172 28 DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 107 (182)
T ss_pred CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC
Confidence 4555 7899999443 45555 457899999999999999999999999999999999999999998 67766664432
Q ss_pred CCCCCeEEEEEecCCCCCCCC---------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMS---------PVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
++.|+++|+||+|+..... ...+....+..+++..++ +|++|||++|+
T Consensus 108 --~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 165 (182)
T cd04172 108 --PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 165 (182)
T ss_pred --CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCC
Confidence 5799999999999864210 011233334445555664 89999999984
No 27
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.94 E-value=3.2e-25 Score=137.23 Aligned_cols=124 Identities=44% Similarity=0.790 Sum_probs=101.7
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
++..+.||+|+....+..+++.+.+|||||++.++..|..+++.++++++|+|.++++++.++..|+..+++.....+.|
T Consensus 23 ~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p 102 (169)
T cd04158 23 EFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL 102 (169)
T ss_pred CCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC
Confidence 45678999998888888899999999999999999999999999999999999999999999999999888765446789
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+......+++.+....... ..+.+.+++|||++|.
T Consensus 103 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 103 LLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred EEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 9999999999765555555554432211 2334678999999874
No 28
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.94 E-value=2.7e-25 Score=137.95 Aligned_cols=123 Identities=40% Similarity=0.741 Sum_probs=102.9
Q ss_pred CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
+..+.||+|+....+.+++..+.+|||||++.++.++..+++.++++++|+|++++.++.+...|+..+++.....++|+
T Consensus 39 ~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 118 (173)
T cd04154 39 IDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATL 118 (173)
T ss_pred CCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 44788999988888888999999999999999999999999999999999999999999999888888776544468999
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++||+|+.+....+++...+.....+...++++++||++|+
T Consensus 119 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 119 LILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 9999999997755555665555444344567899999999884
No 29
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=3.9e-25 Score=137.45 Aligned_cols=125 Identities=73% Similarity=1.194 Sum_probs=105.9
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
|++..+.||+|.+...+.++++.+.+|||||++.+...|..++++++++++|+|+++++++.....++..+++.....++
T Consensus 38 ~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~ 117 (174)
T cd04153 38 GEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKA 117 (174)
T ss_pred CCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence 45667889999888888889999999999999999999999999999999999999999999888888888776555679
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+....+++.+.++....+..+++++++||++|+
T Consensus 118 p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 118 VLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 999999999997755566666666655445567889999999874
No 30
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=1.1e-26 Score=144.56 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=93.0
Q ss_pred CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~ 76 (126)
|+|. +|.||++... ..+.+ +.+.+.+|||+|+++++.++..++++++++++|||++++++|+.+ ..|+..+.+..
T Consensus 24 ~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~ 103 (176)
T cd04133 24 NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA 103 (176)
T ss_pred CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC
Confidence 5676 7999998443 44555 447899999999999999999999999999999999999999998 57777765433
Q ss_pred CCCCCeEEEEEecCCCCCCCC-------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMS-------PVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
+++|+++||||+|+.+... ...+....+..+++..+. .+++|||++|.
T Consensus 104 --~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 104 --PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred --CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 5799999999999965311 011222233334444555 69999999884
No 31
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=6.6e-25 Score=135.26 Aligned_cols=118 Identities=29% Similarity=0.493 Sum_probs=99.3
Q ss_pred cccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566 5 VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL 84 (126)
Q Consensus 5 ~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 84 (126)
..+.||+|+....+..+++.+.+|||+|+++++.+|..++++++++++|+|.+++.++...+.|+..+.+.. +++|++
T Consensus 26 ~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~pii 103 (164)
T cd04162 26 ESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLV 103 (164)
T ss_pred ccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEE
Confidence 378899998776677788999999999999999999999999999999999999999999998888886543 689999
Q ss_pred EEEecCCCCCCCCHHHHHhhcC-cCcccCCceEEEEeeeee
Q psy6566 85 IYANKQDIKNSMSPVEISNLLD-LTSIKKQQWHIQSCCALT 124 (126)
Q Consensus 85 lv~nK~D~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~Sa~~ 124 (126)
+++||+|+.......++...+. ...++..++.++++||++
T Consensus 104 lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 104 VLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred EEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 9999999987655555555543 334466789999999997
No 32
>KOG0073|consensus
Probab=99.94 E-value=2.6e-25 Score=132.75 Aligned_cols=121 Identities=40% Similarity=0.744 Sum_probs=111.5
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
..+||.|++.+++.+++..+.+||.+||..++..|+.||+.+|++|+|+|.+++..+++....+..++......+.|+++
T Consensus 43 ~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lv 122 (185)
T KOG0073|consen 43 TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLV 122 (185)
T ss_pred ccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999998877778899999
Q ss_pred EEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.+..+.+++......... +...++++.|||.+|+
T Consensus 123 lank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 123 LANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred EEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 9999999988888888877776655 7889999999999984
No 33
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=2.5e-26 Score=144.74 Aligned_cols=123 Identities=16% Similarity=0.273 Sum_probs=90.3
Q ss_pred CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~ 76 (126)
|.|. +|.||+|... ..+.+ +.+.+++|||+|+++|+.+++.++++++++++|||++++++|+.+.. |...+.+.
T Consensus 26 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~- 104 (191)
T cd01875 26 NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH- 104 (191)
T ss_pred CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-
Confidence 5664 8899999543 34555 44789999999999999999999999999999999999999999975 55545432
Q ss_pred CCCCCeEEEEEecCCCCCCCCH-HHH--------HhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSP-VEI--------SNLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~-~~v--------~~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
.+++|+++++||+|+.+.... +.+ ....+..+++..+ +++++|||++|+
T Consensus 105 -~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~ 163 (191)
T cd01875 105 -CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQD 163 (191)
T ss_pred -CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 257999999999999653211 111 1111222333344 689999999874
No 34
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=3.3e-26 Score=142.74 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=92.6
Q ss_pred CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~ 76 (126)
|.|. +|.||++... ..+.+ +.+.+++|||+|++.+..+++.++++++++++|||++++++|+++ ..|+..+.+..
T Consensus 24 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~ 103 (178)
T cd04131 24 DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC 103 (178)
T ss_pred CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC
Confidence 3455 7899998443 45556 457899999999999999999999999999999999999999996 67766665432
Q ss_pred CCCCCeEEEEEecCCCCCCCC---------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMS---------PVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
++.|+++|+||+|+.+... ...+....+..+++..++ +|++|||++|+
T Consensus 104 --~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~ 161 (178)
T cd04131 104 --PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE 161 (178)
T ss_pred --CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence 5789999999999864210 011223334445555665 79999999874
No 35
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=6.8e-26 Score=146.04 Aligned_cols=123 Identities=19% Similarity=0.272 Sum_probs=93.0
Q ss_pred CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~ 76 (126)
|.|. +|.||++... ..+.+ +.+.+.+|||+|++.|..+++.++++|+++++|||++++++|+.+ ..|+..+.+..
T Consensus 36 ~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~ 115 (232)
T cd04174 36 DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC 115 (232)
T ss_pred CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC
Confidence 3455 7899998444 34555 457899999999999999999999999999999999999999985 66766665432
Q ss_pred CCCCCeEEEEEecCCCCCCCC---------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMS---------PVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
++.|+++|+||+|+..... ...+....+..+++..++ .|++|||++|+
T Consensus 116 --~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~ 173 (232)
T cd04174 116 --PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSE 173 (232)
T ss_pred --CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 5789999999999864210 012333334455556676 69999999873
No 36
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.93 E-value=1.4e-25 Score=143.75 Aligned_cols=92 Identities=17% Similarity=0.327 Sum_probs=80.8
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
++|.++.||+|.......++...+.+|||+|++.+..++..+++.++++++|||++++++|+.+..||..+.+.. ..++
T Consensus 23 ~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~ 101 (220)
T cd04126 23 RRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDC 101 (220)
T ss_pred CCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 456678999997776666778899999999999999999999999999999999999999999999888876542 3578
Q ss_pred eEEEEEecCCCCC
Q psy6566 82 AVLIYANKQDIKN 94 (126)
Q Consensus 82 piilv~nK~D~~~ 94 (126)
|+++|+||+|+.+
T Consensus 102 piIlVgNK~DL~~ 114 (220)
T cd04126 102 LFAVVGNKLDLTE 114 (220)
T ss_pred cEEEEEECccccc
Confidence 9999999999865
No 37
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.93 E-value=4.7e-25 Score=139.63 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=93.0
Q ss_pred CCCc-ccCCccCceEEEEE--E--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNVEEVI--W--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~~~~~--~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|.|. .|.||+|+...... + +.+.+.+|||+|+++|..++..++++++++++|||++++.++..+..|+..+.+..
T Consensus 18 ~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~ 97 (200)
T smart00176 18 GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC 97 (200)
T ss_pred CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC
Confidence 4565 68999996665444 3 45899999999999999999999999999999999999999999999888776643
Q ss_pred CCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++|+++|+||+|+... ...+.. .+.+..++.+++|||++|+
T Consensus 98 --~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~ 140 (200)
T smart00176 98 --ENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNY 140 (200)
T ss_pred --CCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCC
Confidence 57999999999998542 111111 2234457789999999874
No 38
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=5.8e-24 Score=130.33 Aligned_cols=121 Identities=42% Similarity=0.722 Sum_probs=97.6
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC--CCCCeE
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED--LSKAAV 83 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pi 83 (126)
.+.||+|+....+..++..+.+|||||++++..+|..+++.++++++|+|++++.++..+..|+..+++... ..++|+
T Consensus 28 ~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 107 (162)
T cd04157 28 IIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPI 107 (162)
T ss_pred eecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCE
Confidence 678999987777777899999999999999999999999999999999999999898888888877766432 247999
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++||+|+.+.....++...+.........+.++++||++|+
T Consensus 108 iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~ 150 (162)
T cd04157 108 LFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGE 150 (162)
T ss_pred EEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence 9999999997654445555544433223345679999999874
No 39
>KOG0081|consensus
Probab=99.92 E-value=4.1e-26 Score=135.93 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=97.4
Q ss_pred CCc-ccCCccCceEEEEEE-------------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHH
Q psy6566 3 EVV-HTSPTIGSNVEEVIW-------------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68 (126)
Q Consensus 3 ~~~-~~~pTi~~~~~~~~~-------------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~ 68 (126)
.|. +..+|+|+.++...+ +.+.+++|||+|||+|+++--.+++.|-+++++||+++..||-+++.|
T Consensus 33 ~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnW 112 (219)
T KOG0081|consen 33 KFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNW 112 (219)
T ss_pred cccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHH
Confidence 344 677899966644333 457899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 69 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.++.-.-.-.+..+++++||+|+.+. +.+.+......+...++|||++||.+|.
T Consensus 113 lSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 113 LSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 988755433356779999999999764 4454444445556778999999999873
No 40
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=3.5e-25 Score=137.46 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=93.0
Q ss_pred CCCc-ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
|+|. .+.||++... ..+.+++ +.+.+|||+|++++..+++.+++.++++++|||++++.+|+.+..|+..+.+...
T Consensus 25 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~ 104 (172)
T cd04141 25 HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL 104 (172)
T ss_pred CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC
Confidence 4565 7889998444 4566644 7799999999999999999999999999999999999999999887665544323
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+++|+++++||+|+.... .+.......+++..++++++|||++|.
T Consensus 105 ~~~~piilvgNK~Dl~~~~---~v~~~~~~~~a~~~~~~~~e~Sa~~~~ 150 (172)
T cd04141 105 TEDIPLVLVGNKVDLESQR---QVTTEEGRNLAREFNCPFFETSAALRH 150 (172)
T ss_pred CCCCCEEEEEEChhhhhcC---ccCHHHHHHHHHHhCCEEEEEecCCCC
Confidence 3579999999999986531 122222223334557799999999874
No 41
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.92 E-value=3.3e-25 Score=137.90 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=89.4
Q ss_pred CCCc-ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~ 76 (126)
|+|. +|.||++... ..+.+++ +.+.+|||+|++++..++..++++++++++|||++++++|+++.. |+..+.+.
T Consensus 24 ~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~- 102 (175)
T cd01874 24 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH- 102 (175)
T ss_pred CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence 4564 8899999554 3566655 788999999999999999999999999999999999999999975 55444332
Q ss_pred CCCCCeEEEEEecCCCCCCCCH-H--------HHHhhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSP-V--------EISNLLDLTSIKKQ-QWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~-~--------~v~~~~~~~~~~~~-~~~~~~~Sa~~~~ 126 (126)
. +++|+++++||+|+...... + .+....+...++.. .+.+++|||++|+
T Consensus 103 ~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~ 161 (175)
T cd01874 103 C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK 161 (175)
T ss_pred C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 2 57999999999998653110 0 11111111122233 3689999999984
No 42
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.92 E-value=6.2e-25 Score=140.90 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=91.7
Q ss_pred CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
++|. +|.||++.+. ..+.+ +.+.+.+|||+|++.|..+++.+++.+|++++|||++++++|+.+..+|...+...
T Consensus 24 ~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~- 102 (222)
T cd04173 24 DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF- 102 (222)
T ss_pred CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-
Confidence 4555 7999999554 45666 45789999999999999999999999999999999999999999976565444332
Q ss_pred CCCCeEEEEEecCCCCCCCC-HHH--------HHhhcCcCcccCCc-eEEEEeeeeeC
Q psy6566 78 LSKAAVLIYANKQDIKNSMS-PVE--------ISNLLDLTSIKKQQ-WHIQSCCALTG 125 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~-~~~--------v~~~~~~~~~~~~~-~~~~~~Sa~~~ 125 (126)
.++.|+++|+||+|+..... ... +....+..+++..+ ++|+||||+++
T Consensus 103 ~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 103 CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 26799999999999965311 011 22223334444555 48999999976
No 43
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=8.7e-24 Score=129.45 Aligned_cols=124 Identities=36% Similarity=0.707 Sum_probs=101.0
Q ss_pred CCcccCCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 3 EVVHTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
++..+.||+++....+.+ +...+.+|||+|++.+...|..+++.++++++|+|++++.++.....++...++.....+.
T Consensus 23 ~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (160)
T cd04156 23 ELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGV 102 (160)
T ss_pred CcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCC
Confidence 445678999988877777 5689999999999999999999999999999999999998999998888888776544689
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCc-CcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDL-TSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+......+++...+.. ......++++++|||++|+
T Consensus 103 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 103 PVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 99999999999765555666555432 2334456789999999884
No 44
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.92 E-value=1.2e-24 Score=134.24 Aligned_cols=118 Identities=23% Similarity=0.336 Sum_probs=90.9
Q ss_pred CCc-ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
.|. .+.||+|... ..+.++ .+.+.+|||+|++++...+..++++++++++|+|++++++++.+..|+..+....
T Consensus 26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~- 104 (166)
T cd04122 26 KFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT- 104 (166)
T ss_pred CCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-
Confidence 344 6678988655 445553 4688999999999999999999999999999999999999999999887765432
Q ss_pred CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++.|+++++||+|+.... ..++.. ..++..+++++++||++|.
T Consensus 105 ~~~~~iiiv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd04122 105 NPNTVIFLIGNKADLEAQRDVTYEEAK-----QFADENGLLFLECSAKTGE 150 (166)
T ss_pred CCCCeEEEEEECcccccccCcCHHHHH-----HHHHHcCCEEEEEECCCCC
Confidence 2578999999999997542 222222 1223346789999999884
No 45
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.92 E-value=2.1e-24 Score=135.06 Aligned_cols=122 Identities=18% Similarity=0.273 Sum_probs=91.9
Q ss_pred CCCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|+|. +|.||+|.+. +.+.+++ +.+++|||+|++++..+++.++++++++++|+|++++++++++..|+..+.+..
T Consensus 23 ~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~ 102 (182)
T cd04128 23 GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN 102 (182)
T ss_pred CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 4555 6899999665 4566644 789999999999999999999999999999999999999999999888776543
Q ss_pred CCCCCeEEEEEecCCCCCCCC---HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMS---PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
. ...| ++|+||+|+..+.. .+.+ ....+.+++..+.++++|||++|.
T Consensus 103 ~-~~~p-ilVgnK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~e~SAk~g~ 152 (182)
T cd04128 103 K-TAIP-ILVGTKYDLFADLPPEEQEEI-TKQARKYAKAMKAPLIFCSTSHSI 152 (182)
T ss_pred C-CCCE-EEEEEchhccccccchhhhhh-HHHHHHHHHHcCCEEEEEeCCCCC
Confidence 2 4567 67899999964211 1111 122223334455789999999874
No 46
>KOG0083|consensus
Probab=99.92 E-value=3.2e-26 Score=132.95 Aligned_cols=116 Identities=17% Similarity=0.283 Sum_probs=93.4
Q ss_pred ccCCccCceEE--EEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVE--EVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+..+|+|+.++ -+.+ ..+++++|||+|||+|++.-..|++.||+.++++|+++..||++.+.|+.++.+. ....+
T Consensus 26 ~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey-~k~~v 104 (192)
T KOG0083|consen 26 NFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEY-AKEAV 104 (192)
T ss_pred ceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHH-HHhhH
Confidence 56789996654 4555 6689999999999999999999999999999999999999999999999888554 33567
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
.+.+++||+|+..+ +.+....+...++..++|+.++|||+|
T Consensus 105 ~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg 145 (192)
T KOG0083|consen 105 ALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTG 145 (192)
T ss_pred hHhhhccccccchh---hccccchHHHHHHHHCCCceecccccc
Confidence 89999999999653 233333333344556789999999998
No 47
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=2.7e-23 Score=130.27 Aligned_cols=124 Identities=29% Similarity=0.488 Sum_probs=104.5
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+..+.||.+.....+.+++.++.+||++|++.++..|..++++++++++|+|+++++++.....++..+++.....+.|
T Consensus 41 ~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p 120 (184)
T smart00178 41 RLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP 120 (184)
T ss_pred CCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC
Confidence 34467899998888888899999999999999999999999999999999999999999999988888887765556899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcc-------cCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSI-------KKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+....+.+++...++.... ..+...+++|||++|+
T Consensus 121 iliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~ 171 (184)
T smart00178 121 FLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRM 171 (184)
T ss_pred EEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCC
Confidence 9999999999876677778777764432 2256789999999874
No 48
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.92 E-value=4.1e-23 Score=126.26 Aligned_cols=123 Identities=51% Similarity=0.872 Sum_probs=105.0
Q ss_pred CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
+..+.||+++....+.+++..+.+||+||++.+...+..+++.++++++|+|+++++++.....++..+.+.....+.|+
T Consensus 24 ~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pi 103 (158)
T cd00878 24 VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPL 103 (158)
T ss_pred CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE
Confidence 45788999999888999999999999999999999999999999999999999999999999988888877544568999
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++||+|+......+++.+.+.........++++++||++|.
T Consensus 104 iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd00878 104 LIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGD 146 (158)
T ss_pred EEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCC
Confidence 9999999998765556666665554444567899999999874
No 49
>KOG0091|consensus
Probab=99.92 E-value=2.6e-25 Score=132.95 Aligned_cols=118 Identities=21% Similarity=0.309 Sum_probs=97.3
Q ss_pred ccCCccCceE--EEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC-
Q psy6566 6 HTSPTIGSNV--EEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS- 79 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~- 79 (126)
-..||+|+.+ +-+++ ..+++++|||+|||+|+.+-.+|+++.-++++|+|++++.+|+.+..|+++.......|
T Consensus 36 lsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~ 115 (213)
T KOG0091|consen 36 LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPD 115 (213)
T ss_pred cCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCC
Confidence 3479999654 44566 55899999999999999999999999999999999999999999999998875554434
Q ss_pred CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+-+.+||+|+||... +++..++++.+++..++.|+++||++|.
T Consensus 116 k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 116 KVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGC 159 (213)
T ss_pred eeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCC
Confidence 4457889999999753 5566666666777889999999999884
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.8e-24 Score=138.92 Aligned_cols=117 Identities=22% Similarity=0.336 Sum_probs=92.6
Q ss_pred CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|.+. .+.||+|.......+ +.+.+.+|||+|++++..++..++++++++|+|||++++++++.+..|+..+.+..
T Consensus 36 ~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~ 115 (219)
T PLN03071 36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115 (219)
T ss_pred CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC
Confidence 4555 789999977655444 45899999999999999999999999999999999999999999999888776543
Q ss_pred CCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++|+++++||+|+... .....+ .+.+..++++++|||++|.
T Consensus 116 --~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~ 158 (219)
T PLN03071 116 --ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNY 158 (219)
T ss_pred --CCCcEEEEEEchhhhhccCCHHHH------HHHHhcCCEEEEcCCCCCC
Confidence 67999999999998642 122222 1223456789999999874
No 51
>KOG0095|consensus
Probab=99.91 E-value=5.3e-25 Score=130.07 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=96.4
Q ss_pred CCc-ccCCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
-|+ ....||| +..+++.+ ++++++||||+|||+|+..-++|++.|+++++++|++-..+|+-+-+|+.++-+. .
T Consensus 31 lfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~y-a 109 (213)
T KOG0095|consen 31 LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQY-A 109 (213)
T ss_pred CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHH-h
Confidence 344 4568999 55677777 6689999999999999999999999999999999999999999999998887543 3
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
...+-.++|+||.|+.+. +++.+..++.+......-|.++||++.
T Consensus 110 n~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea 154 (213)
T KOG0095|consen 110 NNKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEA 154 (213)
T ss_pred hcceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccch
Confidence 356778999999998764 456666666666556667889999864
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.91 E-value=2.7e-24 Score=131.97 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=90.9
Q ss_pred CCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 3 EVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 3 ~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
.+. .+.||++ .....+.+++ +.+.+|||+|++++..++..++++++++++|+|++++++++.+..|+..+.+....
T Consensus 25 ~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (163)
T cd04136 25 IFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT 104 (163)
T ss_pred CCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 344 6789988 5456676744 67889999999999999999999999999999999999999999988887665444
Q ss_pred CCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+.+.. ...+. . ...+..+.+++++||++|.
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEG-Q----ALARQWGCPFYETSAKSKI 149 (163)
T ss_pred CCCCEEEEEECccccccceecHHHH-H----HHHHHcCCeEEEecCCCCC
Confidence 679999999999986521 11111 1 1112234689999999874
No 53
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.91 E-value=3.5e-23 Score=127.55 Aligned_cols=121 Identities=39% Similarity=0.647 Sum_probs=100.4
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
.+.||++.+...+.+++..+.+|||||++.+..++..+++.++++++|+|+++++++.....++..+++.....+.|+++
T Consensus 33 ~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 112 (167)
T cd04160 33 KITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLI 112 (167)
T ss_pred ccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 67899998888888899999999999999999999999999999999999999888998888888887765556899999
Q ss_pred EEecCCCCCCCCHHHHHhhcCcCc--ccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISNLLDLTS--IKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.......++...+.... .....++++++||++|+
T Consensus 113 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 155 (167)
T cd04160 113 LANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGT 155 (167)
T ss_pred EEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCc
Confidence 999999977555455544443222 23346789999999884
No 54
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.91 E-value=4.2e-23 Score=129.26 Aligned_cols=125 Identities=42% Similarity=0.705 Sum_probs=96.2
Q ss_pred CCCcccCCccCceEEEEEE-----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIW-----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
+++..+.||+|+....+.+ +++.+.+|||+|++++..+|..+++.++++++|+|++++++++.+..|+..+.+..
T Consensus 26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~ 105 (183)
T cd04152 26 NEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFS 105 (183)
T ss_pred CCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 3556678999977766555 46899999999999999999999999999999999999988988888887776654
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCc-ccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTS-IKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~Sa~~~~ 126 (126)
...+.|+++++||+|+.+....+++........ .....++++++||++|+
T Consensus 106 ~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 156 (183)
T cd04152 106 ENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGE 156 (183)
T ss_pred hcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCC
Confidence 445799999999999876444444443333221 12234678999999874
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.91 E-value=5.9e-24 Score=131.74 Aligned_cols=124 Identities=24% Similarity=0.345 Sum_probs=92.0
Q ss_pred CCCc-ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
++|. .|.||++... ..+.+. .+.+++|||+|++++..++..++++++++++|+|+++++++..+..|+..+.+..
T Consensus 23 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~ 102 (170)
T cd04108 23 DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEN 102 (170)
T ss_pred CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 3455 7899999554 455553 4689999999999999999999999999999999999999999999888876654
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...+.|+++|+||+|+...... ...+.......+..+.+++++||++|.
T Consensus 103 ~~~~~~iilVgnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~e~Sa~~g~ 151 (170)
T cd04108 103 DPSSVLLFLVGTKKDLSSPAQY-ALMEQDAIKLAAEMQAEYWSVSALSGE 151 (170)
T ss_pred CCCCCeEEEEEEChhcCccccc-cccHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3346789999999998643211 111111112223334679999999874
No 56
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.91 E-value=3.5e-24 Score=131.79 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=92.2
Q ss_pred CCCc-ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 2 NEVV-HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 2 ~~~~-~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
|.+. .+.||++.. ...+.++ .+.+.+|||+|++++..+++.++++++++++|+|.+++.+++.+.+|+..+.+...
T Consensus 24 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~ 103 (164)
T cd04175 24 GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD 103 (164)
T ss_pred CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 3444 678999843 3566664 56788999999999999999999999999999999999999999998888876544
Q ss_pred CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.|+++++||+|+.+.. ...+. . ...+..+++++++||++|.
T Consensus 104 ~~~~piilv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~~~Sa~~~~ 149 (164)
T cd04175 104 TEDVPMILVGNKCDLEDERVVGKEQG-Q----NLARQWGCAFLETSAKAKI 149 (164)
T ss_pred CCCCCEEEEEECCcchhccEEcHHHH-H----HHHHHhCCEEEEeeCCCCC
Confidence 4689999999999997532 11111 1 1122334689999999874
No 57
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.91 E-value=1e-22 Score=128.03 Aligned_cols=124 Identities=28% Similarity=0.530 Sum_probs=102.4
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+..+.||++.....+.+++..+.+||+||++.++..|..+++.++++++|+|+++.+++.....++..+++.....+.|
T Consensus 43 ~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 122 (190)
T cd00879 43 RLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP 122 (190)
T ss_pred CCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC
Confidence 45578899998888888899999999999999999999999999999999999999989988888888888765556799
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcc-----------cCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSI-----------KKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.......++...+..... ....+.+++|||++|+
T Consensus 123 vivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 177 (190)
T cd00879 123 FLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQ 177 (190)
T ss_pred EEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCC
Confidence 9999999999766566666665543211 1234679999999884
No 58
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.91 E-value=3e-24 Score=133.50 Aligned_cols=123 Identities=16% Similarity=0.273 Sum_probs=88.1
Q ss_pred CCCc-ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~ 76 (126)
|.|. +|.||++.. ...+.++ .+.+.+|||+|++.+..+++.++++++++++|||++++++|+++.. |+..+...
T Consensus 24 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~- 102 (174)
T cd01871 24 NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH- 102 (174)
T ss_pred CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence 4554 889999833 3455553 4789999999999999999999999999999999999999999964 55544333
Q ss_pred CCCCCeEEEEEecCCCCCCC-CHHHHH--------hhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSM-SPVEIS--------NLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~-~~~~v~--------~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
.++.|+++++||+|+.... ..+.+. ...+..+++..+ .++++|||++|+
T Consensus 103 -~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 161 (174)
T cd01871 103 -CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK 161 (174)
T ss_pred -CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence 2579999999999996421 111111 111112222333 589999999984
No 59
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.91 E-value=7.7e-24 Score=132.01 Aligned_cols=116 Identities=19% Similarity=0.369 Sum_probs=89.5
Q ss_pred ccCCccCceE--EEEEEC------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566 6 HTSPTIGSNV--EEVIWK------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK 71 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~ 71 (126)
.+.||++... ..+.+. .+.+.+|||+|++++...+..++++++++++|+|+++++++..+..|+..
T Consensus 32 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 111 (180)
T cd04127 32 KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQ 111 (180)
T ss_pred cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 6789998554 334432 37899999999999999999999999999999999999999999998887
Q ss_pred HhCCCCCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 72 MLNHEDLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 72 ~~~~~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+......++.|+++|+||+|+.+. ...++.. .+++..+++++++||++|.
T Consensus 112 i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~Sak~~~ 163 (180)
T cd04127 112 LQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK-----ALADKYGIPYFETSAATGT 163 (180)
T ss_pred HHHhcCCCCCcEEEEEeCccchhcCccCHHHHH-----HHHHHcCCeEEEEeCCCCC
Confidence 755433357899999999999653 2222221 2223345689999999874
No 60
>KOG0097|consensus
Probab=99.91 E-value=3.2e-24 Score=125.87 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=94.6
Q ss_pred CCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 8 SPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 8 ~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
-.||| +..+.+.+ +++++++|||+|||+|+...++|++++.+.++|+|++++.+...+..|+....... .++..+
T Consensus 41 phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i 119 (215)
T KOG0097|consen 41 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVI 119 (215)
T ss_pred CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEE
Confidence 35788 44566777 78999999999999999999999999999999999999999999999887764433 367889
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++||.|+... +++.-+....++..+++.+.++|||+|+
T Consensus 120 ~lignkadle~q---rdv~yeeak~faeengl~fle~saktg~ 159 (215)
T KOG0097|consen 120 FLIGNKADLESQ---RDVTYEEAKEFAEENGLMFLEASAKTGQ 159 (215)
T ss_pred EEecchhhhhhc---ccCcHHHHHHHHhhcCeEEEEecccccC
Confidence 999999999764 3444444456667788999999999984
No 61
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.91 E-value=9.7e-24 Score=129.66 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|++. .+.||+|... ..+.+.+ +.+.+|||+|++++..++..+++.++++++|||++++++|+.+..|+..+...
T Consensus 23 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~- 101 (161)
T cd04117 23 NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY- 101 (161)
T ss_pred CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence 3454 6789999654 5666644 67899999999999999999999999999999999999999999988776543
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...+.|+++++||+|+...... ........++..+.++++|||++|.
T Consensus 102 ~~~~~~iilvgnK~Dl~~~~~v---~~~~~~~~~~~~~~~~~e~Sa~~~~ 148 (161)
T cd04117 102 APEGVQKILIGNKADEEQKRQV---GDEQGNKLAKEYGMDFFETSACTNS 148 (161)
T ss_pred CCCCCeEEEEEECcccccccCC---CHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 2257899999999998654211 1111112222334689999999873
No 62
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.91 E-value=1.1e-23 Score=134.90 Aligned_cols=121 Identities=19% Similarity=0.242 Sum_probs=90.6
Q ss_pred CCc-ccCCccCceE--EEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
.|. .|.||++... ..+.+. .+.+.+|||+|++.+..++..+++.+|++++|||++++++|+.+..|+..+.+..
T Consensus 24 ~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~ 103 (215)
T cd04109 24 GFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVL 103 (215)
T ss_pred CCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 344 7899999554 556662 4789999999999999999999999999999999999999999988877775542
Q ss_pred C--CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 D--LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~--~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
. ..+.|+++++||+|+..... +.......+++..+++++++||++|+
T Consensus 104 ~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~~~~~~~~~~~iSAktg~ 152 (215)
T cd04109 104 KSSETQPLVVLVGNKTDLEHNRT---VKDDKHARFAQANGMESCLVSAKTGD 152 (215)
T ss_pred cccCCCceEEEEEECcccccccc---cCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 2 24578999999999964211 11111112223345689999999884
No 63
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.91 E-value=5.8e-24 Score=133.85 Aligned_cols=122 Identities=20% Similarity=0.191 Sum_probs=90.6
Q ss_pred CCCc-ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 2 NEVV-HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 2 ~~~~-~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
|.|. .+.||++.. ...+.+++ +.+++|||+|++++..++..++++++++++|||++++++++.+..|+..+.....
T Consensus 22 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~ 101 (190)
T cd04144 22 NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD 101 (190)
T ss_pred CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence 4555 678999843 34555544 5689999999999999999999999999999999999999999988877754322
Q ss_pred --CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 --LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 --~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.|+++++||+|+..... +.......+++..+++++++||++|.
T Consensus 102 ~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~~~~~~~~~~e~SAk~~~ 149 (190)
T cd04144 102 ESAADVPIMIVGNKCDKVYERE---VSTEEGAALARRLGCEFIEASAKTNV 149 (190)
T ss_pred ccCCCCCEEEEEEChhccccCc---cCHHHHHHHHHHhCCEEEEecCCCCC
Confidence 25789999999999864321 11111112233445689999999874
No 64
>PTZ00369 Ras-like protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=132.44 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=91.2
Q ss_pred CCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 3 EVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 3 ~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
++. .+.||++... +.+.+ +.+.+.+|||+|++.+..++..+++.++++++|+|++++++++.+..|+..+.+....
T Consensus 29 ~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~ 108 (189)
T PTZ00369 29 HFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK 108 (189)
T ss_pred CCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 444 7789998443 45566 4467889999999999999999999999999999999999999999888877665434
Q ss_pred CCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++++||+|+.+.. ...+.. ...+..+++++++||++|.
T Consensus 109 ~~~piiiv~nK~Dl~~~~~i~~~~~~-----~~~~~~~~~~~e~Sak~~~ 153 (189)
T PTZ00369 109 DRVPMILVGNKCDLDSERQVSTGEGQ-----ELAKSFGIPFLETSAKQRV 153 (189)
T ss_pred CCCCEEEEEECcccccccccCHHHHH-----HHHHHhCCEEEEeeCCCCC
Confidence 588999999999986531 211111 1122335689999999874
No 65
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=6.6e-24 Score=130.38 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=91.1
Q ss_pred CCCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 2 NEVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 2 ~~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
|.+. .+.||++ +....+.+++ +.+++|||+|++++..++..++++++++++|+|++++.+++++..|+..+.+...
T Consensus 24 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 103 (163)
T cd04176 24 GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG 103 (163)
T ss_pred CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 3454 6678887 5556676644 5688999999999999999999999999999999999999999998888876544
Q ss_pred CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..++|+++++||+|+.... ...+ .. ......+.+++++||++|.
T Consensus 104 ~~~~piviv~nK~Dl~~~~~~~~~~-~~----~~~~~~~~~~~~~Sa~~~~ 149 (163)
T cd04176 104 YEKVPIILVGNKVDLESEREVSSAE-GR----ALAEEWGCPFMETSAKSKT 149 (163)
T ss_pred CCCCCEEEEEECccchhcCccCHHH-HH----HHHHHhCCEEEEecCCCCC
Confidence 4689999999999986421 1111 11 1112234689999999873
No 66
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=1.6e-23 Score=132.92 Aligned_cols=119 Identities=20% Similarity=0.304 Sum_probs=90.1
Q ss_pred CCc-ccCCccCce--EEEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-
Q psy6566 3 EVV-HTSPTIGSN--VEEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH- 75 (126)
Q Consensus 3 ~~~-~~~pTi~~~--~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~- 75 (126)
.+. .+.||+|.. ...+.+. .+.+.+|||+|++++..+++.++++++++++|||++++++|+.+..|+..+...
T Consensus 24 ~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~ 103 (201)
T cd04107 24 IFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKV 103 (201)
T ss_pred CCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 344 688999954 3455554 578999999999999999999999999999999999999999998887665432
Q ss_pred --CCCCCCeEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 76 --EDLSKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 76 --~~~~~~piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
....++|+++++||+|+.. ....+++... .+..+ ..++++||++|.
T Consensus 104 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~e~Sak~~~ 154 (201)
T cd04107 104 TLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQF-----CKENGFIGWFETSAKEGI 154 (201)
T ss_pred cccCCCCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCceEEEEeCCCCC
Confidence 1235789999999999963 3333333222 22233 579999999874
No 67
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.90 E-value=2.6e-23 Score=128.14 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=89.6
Q ss_pred CCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
.+. .|.||+|... ..+.. +.+.+++|||+|++++..++..++++++++++|+|++++++++.+..|+..+.+..
T Consensus 25 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~- 103 (165)
T cd01865 25 SFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS- 103 (165)
T ss_pred CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-
Confidence 344 6789998544 34444 34789999999999999999999999999999999999999999999887765432
Q ss_pred CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.|+++++||+|+.+.. ..++..+ ..+..+++++++||++|.
T Consensus 104 ~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 149 (165)
T cd01865 104 WDNAQVILVGNKCDMEDERVVSSERGRQ-----LADQLGFEFFEASAKENI 149 (165)
T ss_pred CCCCCEEEEEECcccCcccccCHHHHHH-----HHHHcCCEEEEEECCCCC
Confidence 3578999999999996532 1222211 122345689999999874
No 68
>KOG0395|consensus
Probab=99.90 E-value=2.2e-23 Score=131.35 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=101.6
Q ss_pred CCc-ccCCccC-ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 3 EVV-HTSPTIG-SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 3 ~~~-~~~pTi~-~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
.|. .|.||++ .+.+.+.+ +.+.+.|+||+|++.+..+...+++.++++++||+++++.||+.+..++..+++....
T Consensus 27 ~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~ 106 (196)
T KOG0395|consen 27 RFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR 106 (196)
T ss_pred ccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence 455 7899999 66788888 5578999999999999999999999999999999999999999999999999777666
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
..+|+++||||+|+... ..+....++..+...++.|+|+||+.+
T Consensus 107 ~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 107 DDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLN 150 (196)
T ss_pred CCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCC
Confidence 77999999999999864 344444444556677788999999875
No 69
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.90 E-value=6.3e-22 Score=120.43 Aligned_cols=121 Identities=29% Similarity=0.524 Sum_probs=100.3
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
.+.||++++...+..+++.+.+||++|++.+...+..+++.++++++|+|++++.++.....++..+++.....++|+++
T Consensus 27 ~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 106 (159)
T cd04159 27 DTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLV 106 (159)
T ss_pred CccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEE
Confidence 78899998888888888999999999999999999999999999999999999888888888888887654446889999
Q ss_pred EEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.+.....++.............++++++||++|.
T Consensus 107 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (159)
T cd04159 107 LGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKT 147 (159)
T ss_pred EEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCC
Confidence 99999987654444455554444444556789999999874
No 70
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=1.1e-23 Score=133.05 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=84.7
Q ss_pred ccCCccCc-eEE--EE--------EE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHH
Q psy6566 6 HTSPTIGS-NVE--EV--------IW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYK 71 (126)
Q Consensus 6 ~~~pTi~~-~~~--~~--------~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~ 71 (126)
+|.||+|. ... .. .+ +.+.+++|||+|++. .+...++++++++++|||++++.+|+.+.. |+..
T Consensus 36 ~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~ 113 (195)
T cd01873 36 THVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPE 113 (195)
T ss_pred ccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHH
Confidence 68899963 221 11 23 457899999999975 356678999999999999999999999975 6555
Q ss_pred HhCCCCCCCCeEEEEEecCCCCCCCC----------------HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 72 MLNHEDLSKAAVLIYANKQDIKNSMS----------------PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 72 ~~~~~~~~~~piilv~nK~D~~~~~~----------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.+.. ++.|+++|+||+|+..... ...+....+..+++..+++|++|||++|+
T Consensus 114 i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~ 182 (195)
T cd01873 114 IRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQF 182 (195)
T ss_pred HHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCC
Confidence 54332 5789999999999864210 12333344445556677899999999984
No 71
>KOG0072|consensus
Probab=99.90 E-value=4.2e-23 Score=121.14 Aligned_cols=125 Identities=48% Similarity=0.846 Sum_probs=114.4
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
|+...+.||+|++...+..++.++++||.+|+-..++.|+-|+.+.++++||+|.++++...-+...+..+++.+.+++.
T Consensus 41 gevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a 120 (182)
T KOG0072|consen 41 GEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA 120 (182)
T ss_pred CcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc
Confidence 56668899999999999999999999999999999999999999999999999999999888888889999998888889
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++++.||+|........++...++....+.+.+.++++||.+|+
T Consensus 121 ~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~ 165 (182)
T KOG0072|consen 121 KLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGE 165 (182)
T ss_pred eEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccccc
Confidence 999999999998876777888888888788888999999999874
No 72
>KOG0088|consensus
Probab=99.90 E-value=5.2e-25 Score=131.16 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=92.4
Q ss_pred CCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 8 SPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 8 ~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
.+|+. |-.+.+.+ ....+.||||+|||+|..+-+.|+++.+++++|||+++++||+.++.|..++....+ ..+.+
T Consensus 43 lsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l 121 (218)
T KOG0088|consen 43 LSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIEL 121 (218)
T ss_pred HHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEE
Confidence 34554 44456666 345799999999999999999999999999999999999999999999988866544 67899
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
++|+||+||.++ +.+....++.++..-+..++++||+.+
T Consensus 122 ~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 122 LIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred EEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccc
Confidence 999999999764 444444555666667778999999976
No 73
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=5.7e-23 Score=131.26 Aligned_cols=119 Identities=24% Similarity=0.364 Sum_probs=91.2
Q ss_pred CCc-ccCCccCceE--EEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
.+. .+.||+|... ..+.+ ..+.+++|||+|++++..++..+++.++++++|||++++++++++.+|+..+.+..
T Consensus 26 ~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~ 105 (211)
T cd04111 26 RFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHI 105 (211)
T ss_pred CCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 344 5679998554 44555 24789999999999999999999999999999999999999999999988886654
Q ss_pred CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.....|+++++||+|+... ....+. ..+++..+++++++||++|+
T Consensus 106 ~~~~~~iilvgNK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~Sak~g~ 152 (211)
T cd04111 106 QPHRPVFILVGHKCDLESQRQVTREEA-----EKLAKDLGMKYIETSARTGD 152 (211)
T ss_pred CCCCCeEEEEEEccccccccccCHHHH-----HHHHHHhCCEEEEEeCCCCC
Confidence 3356789999999998653 122221 12233445789999999874
No 74
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.89 E-value=1.5e-22 Score=125.01 Aligned_cols=114 Identities=20% Similarity=0.294 Sum_probs=90.4
Q ss_pred ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.......+ +.+.+.+|||+|++.+..++..+++.+|++++|+|+++++++..+..|+..+.+.. .++
T Consensus 28 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~ 105 (166)
T cd00877 28 KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNI 105 (166)
T ss_pred CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence 688999977666555 45789999999999999999999999999999999999999999988888876553 379
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......+.. .......++++++||++|+
T Consensus 106 piiiv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~ 145 (166)
T cd00877 106 PIVLCGNKVDIKDRKVKAKQI-----TFHRKKNLQYYEISAKSNY 145 (166)
T ss_pred cEEEEEEchhcccccCCHHHH-----HHHHHcCCEEEEEeCCCCC
Confidence 999999999997422111111 1223456789999999884
No 75
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.89 E-value=2.7e-23 Score=130.75 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=88.8
Q ss_pred CCCc-ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~ 76 (126)
|.+. .|.||++... ..+.++ .+.+.+|||+|++.+..++..+++.++++++|||++++++|+.+. .|+..+....
T Consensus 23 ~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~ 102 (189)
T cd04134 23 GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC 102 (189)
T ss_pred CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 3454 6789998554 445553 478999999999999999999999999999999999999999886 4666655432
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHH---------HhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEI---------SNLLDLTSIKK-QQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v---------~~~~~~~~~~~-~~~~~~~~Sa~~~~ 126 (126)
++.|+++++||+|+.......+. ....+...+.. ..+++++|||++|.
T Consensus 103 --~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 103 --PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred --CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 57999999999999764221111 11111222222 23689999999874
No 76
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=5.8e-23 Score=126.58 Aligned_cols=121 Identities=15% Similarity=0.120 Sum_probs=88.1
Q ss_pred CCc-ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--C
Q psy6566 3 EVV-HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--E 76 (126)
Q Consensus 3 ~~~-~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~ 76 (126)
.|. .+.||++.. ...+.. +...+.+|||+|++++..++..+++.++++++|+|++++++++.+..|+..+.+. .
T Consensus 25 ~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (165)
T cd04140 25 TFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGN 104 (165)
T ss_pred CCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence 444 678998833 344444 5578999999999999999999999999999999999999999998887655432 1
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+++|+++++||+|+..... +............++++++|||++|+
T Consensus 105 ~~~~~piilv~nK~Dl~~~~~---v~~~~~~~~~~~~~~~~~e~SA~~g~ 151 (165)
T cd04140 105 NIEKIPIMLVGNKCDESHKRE---VSSNEGAACATEWNCAFMETSAKTNH 151 (165)
T ss_pred CCCCCCEEEEEECccccccCe---ecHHHHHHHHHHhCCcEEEeecCCCC
Confidence 225789999999999965211 11111112223345679999999884
No 77
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.89 E-value=6.1e-23 Score=125.84 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=86.4
Q ss_pred CCCc-ccCCccCceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 2 NEVV-HTSPTIGSNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
|.|. .+.||.+.....+.+++ +.+.+|||+|++.. .+++.++++++|||++++++|+++..|+..+......
T Consensus 23 ~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~ 97 (158)
T cd04103 23 GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI 97 (158)
T ss_pred CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 3455 35566555556777765 67999999999763 3678899999999999999999999998888766544
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK-QQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~ 126 (126)
+++|+++++||+|+.... .+++....+..+++. ..+.|++|||++|.
T Consensus 98 ~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 98 SEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 679999999999985311 122333222233323 35789999999874
No 78
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.89 E-value=1.3e-22 Score=128.57 Aligned_cols=114 Identities=23% Similarity=0.263 Sum_probs=88.7
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.|.||++... ..+.+. .+.+.+|||+|++.+..++..+++.++++++|+|++++++++.+..|+..+.... ...
T Consensus 34 ~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~ 111 (199)
T cd04110 34 SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDV 111 (199)
T ss_pred CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence 6889999554 555553 3689999999999999999999999999999999999999999999888765443 578
Q ss_pred eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ...+... +.+..+++++++||++|.
T Consensus 112 piivVgNK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~ 153 (199)
T cd04110 112 CKVLVGNKNDDPERKVVETEDAYK-----FAGQMGISLFETSAKENI 153 (199)
T ss_pred CEEEEEECcccccccccCHHHHHH-----HHHHcCCEEEEEECCCCc
Confidence 999999999987532 1122211 122334689999999874
No 79
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.89 E-value=1.4e-22 Score=124.70 Aligned_cols=116 Identities=27% Similarity=0.353 Sum_probs=89.8
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC----
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED---- 77 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~---- 77 (126)
.+.||++... ..+.+ ..+.+.+|||+|++.+..++..+++.++++++|+|.+++++++.+..|+..+.+...
T Consensus 28 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 107 (168)
T cd04119 28 KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGN 107 (168)
T ss_pred CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccc
Confidence 7889999654 45555 457899999999999999999999999999999999999999999888887765432
Q ss_pred CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.|+++++||+|+... ....+... +....+++++++||++|.
T Consensus 108 ~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 153 (168)
T cd04119 108 MENIVVVVCANKIDLTKHRAVSEDEGRL-----WAESKGFKYFETSACTGE 153 (168)
T ss_pred CCCceEEEEEEchhcccccccCHHHHHH-----HHHHcCCeEEEEECCCCC
Confidence 246899999999998632 22222211 222344689999999874
No 80
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.89 E-value=1.2e-22 Score=124.22 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=90.6
Q ss_pred CCc-ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 3 EVV-HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 3 ~~~-~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
++. ++.||++.. ...+.+++ +.+.+|||+|++.+..++..+++.++++++|+|++++.+++++..|+..+.+....
T Consensus 25 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~ 104 (162)
T cd04138 25 HFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS 104 (162)
T ss_pred CCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 444 678998833 45566644 56889999999999999999999999999999999999999998888888765444
Q ss_pred CCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+... ....+.... .+..+++++++||++|.
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 148 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVSSRQGQDL-----AKSYGIPYIETSAKTRQ 148 (162)
T ss_pred CCCCEEEEEECcccccceecHHHHHHH-----HHHhCCeEEEecCCCCC
Confidence 67899999999998652 122222111 12335689999999874
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.89 E-value=8.3e-23 Score=126.47 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=89.1
Q ss_pred CCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchH-HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLR-AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
.+. .+.||++... ..+.+.+ ..+.+|||+|++.++ .++..+++.+|++++|+|+++++++..+..|+..+....
T Consensus 26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 105 (170)
T cd04115 26 RFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS 105 (170)
T ss_pred CCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence 444 6789998544 4555644 789999999999987 578889999999999999999999999999887776554
Q ss_pred CCCCCeEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCceEEEEeeeee
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQWHIQSCCALT 124 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~ 124 (126)
...++|+++++||+|+...... .+.... .++...++++++||++
T Consensus 106 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 106 LPNEVPRILVGNKCDLREQIQVPTDLAQR----FADAHSMPLFETSAKD 150 (170)
T ss_pred CCCCCCEEEEEECccchhhcCCCHHHHHH----HHHHcCCcEEEEeccC
Confidence 4467999999999998653211 111221 2223457899999998
No 82
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=1.3e-22 Score=125.00 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=88.6
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+++|||+|++++..++..+++.++++++|+|+++++++..+..|+..+.+.. .++.
T Consensus 30 ~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~ 108 (166)
T cd01869 30 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENV 108 (166)
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCC
Confidence 677888854 45565543 678999999999999999999999999999999999999999999887775442 2578
Q ss_pred eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ..++... +....+++++++||++|.
T Consensus 109 ~~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 150 (166)
T cd01869 109 NKLLVGNKCDLTDKRVVDYSEAQE-----FADELGIPFLETSAKNAT 150 (166)
T ss_pred cEEEEEEChhcccccCCCHHHHHH-----HHHHcCCeEEEEECCCCc
Confidence 999999999986532 1222211 222345689999999874
No 83
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=1.8e-22 Score=124.65 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=90.5
Q ss_pred CCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
.|. .|.||++... ..+.+.+ +.+++|||+|++.+...+..+++++|++++|+|+++++++..+.+|+..+.+..
T Consensus 27 ~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~- 105 (167)
T cd01867 27 SFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA- 105 (167)
T ss_pred cCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-
Confidence 344 6789999654 4556643 689999999999999999999999999999999999999999999888776542
Q ss_pred CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.|+++++||+|+.+. ...++... .+...+.+++++||++|.
T Consensus 106 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 151 (167)
T cd01867 106 SEDVERMLVGNKCDMEEKRVVSKEEGEA-----LADEYGIKFLETSAKANI 151 (167)
T ss_pred CCCCcEEEEEECcccccccCCCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence 367899999999999753 22222221 222345689999999873
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.89 E-value=1.2e-21 Score=127.64 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=93.8
Q ss_pred CCCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-
Q psy6566 2 NEVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE- 76 (126)
Q Consensus 2 ~~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~- 76 (126)
|+|. +|.||++ +..+.+.+++ +.+.+|||+|++.|..++..++..+|++++|||++++++|+++..|+.++.+..
T Consensus 23 ~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~ 102 (247)
T cd04143 23 GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKS 102 (247)
T ss_pred CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhc
Confidence 4555 7889998 5566677744 788999999999999999989999999999999999999999998888876531
Q ss_pred -------CCCCCeEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 -------DLSKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 -------~~~~~piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...+.|+++++||+|+.. +...+++...... ...+.++++||++|.
T Consensus 103 ~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg~ 157 (247)
T cd04143 103 CLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKNS 157 (247)
T ss_pred ccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCCC
Confidence 225789999999999964 3333444333321 235679999999874
No 85
>PLN03110 Rab GTPase; Provisional
Probab=99.89 E-value=1.6e-22 Score=129.63 Aligned_cols=116 Identities=24% Similarity=0.334 Sum_probs=89.8
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|... ..+.++ .+.+++|||+|++++..++..+++.++++++|+|++++.+++.+..|+..+.+.. ..++
T Consensus 40 ~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 118 (216)
T PLN03110 40 ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNI 118 (216)
T ss_pred CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCC
Confidence 6789999665 555554 4789999999999999999999999999999999999999999998887765442 2579
Q ss_pred eEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+.... .+... ......+++++++||++|.
T Consensus 119 piiiv~nK~Dl~~~~~~~~~~~~----~l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 119 VIMMAGNKSDLNHLRSVAEEDGQ----ALAEKEGLSFLETSALEAT 160 (216)
T ss_pred eEEEEEEChhcccccCCCHHHHH----HHHHHcCCEEEEEeCCCCC
Confidence 99999999998653211 11111 1222346789999999874
No 86
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.88 E-value=1.7e-22 Score=123.83 Aligned_cols=114 Identities=20% Similarity=0.342 Sum_probs=88.2
Q ss_pred ccCCccCceE--EEEEEC----CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK----NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
.+.||++... ..+.+. .+.+++|||||++.+...+..++++++++++|+|++++++++.+..|+..+.+.. .
T Consensus 28 ~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~ 105 (162)
T cd04106 28 DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC--G 105 (162)
T ss_pred CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--C
Confidence 6789998654 444443 5789999999999999999999999999999999999999999988887765432 5
Q ss_pred CCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++|+++++||+|+... ...++.. ...+..+++++++||++|.
T Consensus 106 ~~p~iiv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 149 (162)
T cd04106 106 DIPMVLVQTKIDLLDQAVITNEEAE-----ALAKRLQLPLFRTSVKDDF 149 (162)
T ss_pred CCCEEEEEEChhcccccCCCHHHHH-----HHHHHcCCeEEEEECCCCC
Confidence 7999999999998653 2222221 1122345689999999873
No 87
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.88 E-value=2e-22 Score=123.82 Aligned_cols=116 Identities=21% Similarity=0.201 Sum_probs=88.6
Q ss_pred ccCCccC-ceEEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIG-SNVEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++ .....+.++ .+.+.+|||+|++++..++..+++.++++++|+|++++++++.+..|+..+.+.....+.|
T Consensus 28 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 107 (164)
T smart00173 28 DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP 107 (164)
T ss_pred ccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 6678887 444555563 4688999999999999999999999999999999999999999988887776554445789
Q ss_pred EEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.... ..+.... ..+..+.+++++||++|.
T Consensus 108 ii~v~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 148 (164)
T smart00173 108 IVLVGNKCDLESERVVSTEEGKE-----LARQWGCPFLETSAKERV 148 (164)
T ss_pred EEEEEECccccccceEcHHHHHH-----HHHHcCCEEEEeecCCCC
Confidence 99999999986532 1122111 122234689999999874
No 88
>KOG0074|consensus
Probab=99.88 E-value=2.4e-22 Score=117.73 Aligned_cols=123 Identities=42% Similarity=0.737 Sum_probs=110.7
Q ss_pred CcccCCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 4 VVHTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
+.+-.||-||+.+.++. +..++.+||.+||...+..|..|+++.|+++||+|.++...|++....+-++++.......|
T Consensus 42 ~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp 121 (185)
T KOG0074|consen 42 PRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP 121 (185)
T ss_pred hhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc
Confidence 34667999999999999 55999999999999999999999999999999999999999999999999998888778999
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++..||+|+..+...++++......-.+.+.+++.+|||.+++
T Consensus 122 vlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 122 VLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred eeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 99999999998766677787777777778889999999999764
No 89
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=2.6e-22 Score=123.25 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=88.9
Q ss_pred ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++.. ...+.+++ +.+.+|||||++++..++..+++.++++++|+|++++.+++.+..|+..+.+.....++|
T Consensus 30 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 109 (164)
T cd04145 30 DYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP 109 (164)
T ss_pred ccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 677888833 44555644 678999999999999999999999999999999999999999999888876643335789
Q ss_pred EEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.... ...+.. ...+..+++++++||++|.
T Consensus 110 iiiv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04145 110 MILVGNKADLEHQRKVSREEGQ-----ELARKLKIPYIETSAKDRL 150 (164)
T ss_pred EEEEeeCccccccceecHHHHH-----HHHHHcCCcEEEeeCCCCC
Confidence 99999999986532 111211 1222345689999999874
No 90
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=3.5e-22 Score=125.49 Aligned_cols=119 Identities=24% Similarity=0.291 Sum_probs=90.2
Q ss_pred CCCc-ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
+.+. .|.||+|.. ...+.+ +.+.+++|||+|++.+...+..++++++++++|||+++++++..+..|+..+....
T Consensus 23 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~ 102 (188)
T cd04125 23 DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA 102 (188)
T ss_pred CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 3455 488999954 455666 34678999999999999999999999999999999999999999999887775432
Q ss_pred CCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.|+++++||+|+.+.. ..... . .++...+++++++||++|.
T Consensus 103 -~~~~~~ivv~nK~Dl~~~~~v~~~~~-~----~~~~~~~~~~~evSa~~~~ 148 (188)
T cd04125 103 -RENVIKVIVANKSDLVNNKVVDSNIA-K----SFCDSLNIPFFETSAKQSI 148 (188)
T ss_pred -CCCCeEEEEEECCCCcccccCCHHHH-H----HHHHHcCCeEEEEeCCCCC
Confidence 2468999999999987532 21211 1 1222345689999999873
No 91
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.88 E-value=5.5e-21 Score=118.40 Aligned_cols=123 Identities=39% Similarity=0.767 Sum_probs=102.2
Q ss_pred CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
+..+.||.|++...+.+++..+.+||++|+..+...+..+++.++++++|+|+++..++.....++...++.....++|+
T Consensus 39 ~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 118 (173)
T cd04155 39 ISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPV 118 (173)
T ss_pred CcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 34578999998888888999999999999999999999999999999999999998888888888877776544467999
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++||+|+.......++...+.......+.++++++||++|+
T Consensus 119 ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 119 LVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence 9999999997655556666666555445556778999999884
No 92
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=4e-22 Score=122.66 Aligned_cols=115 Identities=24% Similarity=0.384 Sum_probs=88.7
Q ss_pred ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+++ ..+.+||++|++++..++..+++.++++++|+|++++.++.++.+|+..+.+.. ..+.
T Consensus 31 ~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 109 (165)
T cd01868 31 DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNI 109 (165)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCC
Confidence 6789998654 4455544 679999999999999999999999999999999999999999999888776543 2468
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++.... ....+++++++||++|.
T Consensus 110 pi~vv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 151 (165)
T cd01868 110 VIMLVGNKSDLRHLRAVPTEEAKAF-----AEKNGLSFIETSALDGT 151 (165)
T ss_pred eEEEEEECccccccccCCHHHHHHH-----HHHcCCEEEEEECCCCC
Confidence 99999999998653 222222222 12245689999999874
No 93
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.88 E-value=4.6e-22 Score=122.23 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=87.9
Q ss_pred ccCCccCceE--EEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
++.||+|... ..+.+ ..+.+.+|||+|++.+..++..+++.+|++++|+|++++++++.+..|+..+.+.. .+
T Consensus 30 ~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~ 107 (164)
T cd04101 30 NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KH 107 (164)
T ss_pred cCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CC
Confidence 7889998654 44444 44899999999999999999999999999999999999999999988887765543 56
Q ss_pred CeEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|+++++||+|+.+.... ...... .....+.+++++||++|.
T Consensus 108 ~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04101 108 MPGVLVGNKMDLADKAEVTDAQAQA----FAQANQLKFFKTSALRGV 150 (164)
T ss_pred CCEEEEEECcccccccCCCHHHHHH----HHHHcCCeEEEEeCCCCC
Confidence 899999999998653211 111111 122334679999999874
No 94
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.88 E-value=1.7e-21 Score=123.49 Aligned_cols=93 Identities=26% Similarity=0.436 Sum_probs=77.0
Q ss_pred CCCc-ccCCccCce--EEEEEE-------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566 2 NEVV-HTSPTIGSN--VEEVIW-------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK 71 (126)
Q Consensus 2 ~~~~-~~~pTi~~~--~~~~~~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~ 71 (126)
+.|. ++.||+|.. .+.+++ +.+.+++|||+|++++..++..++++++++++|||++++++++++..|+.+
T Consensus 23 ~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~e 102 (202)
T cd04102 23 NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLE 102 (202)
T ss_pred CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHH
Confidence 3444 788999944 345555 246899999999999999999999999999999999999999999999888
Q ss_pred HhCCC------------------CCCCCeEEEEEecCCCCC
Q psy6566 72 MLNHE------------------DLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 72 ~~~~~------------------~~~~~piilv~nK~D~~~ 94 (126)
+.... ...++|+++||||+|+..
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 103 ALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 86531 124789999999999865
No 95
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=5.4e-22 Score=125.00 Aligned_cols=115 Identities=18% Similarity=0.313 Sum_probs=88.1
Q ss_pred ccCCccCceEE--EEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVE--EVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.... .+.++ .+.+.+|||||++++...+..+++.++++++|+|++++++++++..|+..+.+.. ..++
T Consensus 29 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~ 107 (191)
T cd04112 29 NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDV 107 (191)
T ss_pred CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence 67889985543 45564 4789999999999999999999999999999999999999999998887776542 2578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+... .....+.+++++||++|+
T Consensus 108 piiiv~NK~Dl~~~~~~~~~~~~~-----l~~~~~~~~~e~Sa~~~~ 149 (191)
T cd04112 108 VIMLLGNKADMSGERVVKREDGER-----LAKEYGVPFMETSAKTGL 149 (191)
T ss_pred cEEEEEEcccchhccccCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence 99999999999642 22222211 112334689999999874
No 96
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.88 E-value=1e-22 Score=124.95 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=92.5
Q ss_pred CCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
.|. ++.||+|.......+ ..+.+++||++|++++..++..+++++++++++||++++++++.+..|+..+.....
T Consensus 23 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~ 102 (162)
T PF00071_consen 23 EFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP 102 (162)
T ss_dssp STTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344 788999866554444 557899999999999999999999999999999999999999999988887765542
Q ss_pred CCCCeEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+.. +.+..+. ..+++..+.+|+++||+++.
T Consensus 103 -~~~~iivvg~K~D~~~~~~v~~~~~-----~~~~~~~~~~~~e~Sa~~~~ 147 (162)
T PF00071_consen 103 -EDIPIIVVGNKSDLSDEREVSVEEA-----QEFAKELGVPYFEVSAKNGE 147 (162)
T ss_dssp -TTSEEEEEEETTTGGGGSSSCHHHH-----HHHHHHTTSEEEEEBTTTTT
T ss_pred -ccccceeeeccccccccccchhhHH-----HHHHHHhCCEEEEEECCCCC
Confidence 4689999999999875 3333322 22233445789999999863
No 97
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.87 E-value=7.2e-22 Score=122.11 Aligned_cols=117 Identities=16% Similarity=0.274 Sum_probs=88.4
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC---C
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED---L 78 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~---~ 78 (126)
.+.||+|... ..+.+ +.+.+++|||+|++++..++..+++.++++++|+|++++++++.+..|...+++... .
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 112 (170)
T cd04116 33 QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEP 112 (170)
T ss_pred CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccC
Confidence 5678988654 45555 447889999999999999999999999999999999999999999888877765322 2
Q ss_pred CCCeEEEEEecCCCCC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++++||+|+.. .....++.+... .....+++++||++|.
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 113 ESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDAT 157 (170)
T ss_pred CCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCC
Confidence 4689999999999864 233333322211 1122479999999874
No 98
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.87 E-value=2.3e-22 Score=124.84 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=85.8
Q ss_pred CCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~ 77 (126)
.+. +|.||+. .....+.+++ +.+++|||+|++++..++..++++++++++|+|++++++|+.+. .|+..+...
T Consensus 24 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-- 101 (173)
T cd04130 24 GYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-- 101 (173)
T ss_pred CCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--
Confidence 344 6788875 3334555644 68899999999999999999999999999999999999999885 455555432
Q ss_pred CCCCeEEEEEecCCCCCCCC---------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMS---------PVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
.++.|+++++||+|+..... ...+.......+++..+. ++++|||++|.
T Consensus 102 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 102 NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 25789999999999864321 011111111122233344 89999999874
No 99
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=1.3e-21 Score=120.47 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=88.7
Q ss_pred CCc-ccCCccCc--eEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGS--NVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
.+. .+.||++. ....+.+++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+....
T Consensus 27 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~- 105 (165)
T cd01864 27 TFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG- 105 (165)
T ss_pred CCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-
Confidence 344 56788884 445666655 689999999999999999999999999999999999999999998888775532
Q ss_pred CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQ-QWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~ 126 (126)
..++|+++++||+|+.... ...+... ..+.. ...++++||++|.
T Consensus 106 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 106 ASNVVLLLIGNKCDLEEQREVLFEEACT-----LAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred CCCCcEEEEEECcccccccccCHHHHHH-----HHHHcCCcEEEEEECCCCC
Confidence 2578999999999986532 1122111 11122 2468999999874
No 100
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.87 E-value=1e-21 Score=121.37 Aligned_cols=115 Identities=25% Similarity=0.330 Sum_probs=88.5
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|... ..+.++ .+.+.+|||+|++++..++..+++.++++++|+|++++++++.+..|+..+.+.. .+++
T Consensus 32 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 110 (168)
T cd01866 32 VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNM 110 (168)
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence 5568888554 445553 4789999999999999999999999999999999999999999999888775543 2679
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+.... ....++.++++||++|+
T Consensus 111 pvivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 152 (168)
T cd01866 111 TIMLIGNKCDLESRREVSYEEGEAF-----AKEHGLIFMETSAKTAS 152 (168)
T ss_pred cEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCC
Confidence 99999999998743 222222222 22345689999999874
No 101
>KOG0076|consensus
Probab=99.87 E-value=1e-22 Score=122.79 Aligned_cols=121 Identities=40% Similarity=0.654 Sum_probs=107.1
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
.-.||+|.+..++.+....+.+||.+||+..+++|..|+..||+++|++|+++++.|+.....+++++.+....++|+++
T Consensus 52 ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~ 131 (197)
T KOG0076|consen 52 KITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLV 131 (197)
T ss_pred HeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEecCCCCCCCCHHHHHhhcCc-CcccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISNLLDL-TSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~Sa~~~~ 126 (126)
..||.|+.+.....++...+++ .....+..++..+||.+|+
T Consensus 132 lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~ge 173 (197)
T KOG0076|consen 132 LANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGE 173 (197)
T ss_pred hcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcc
Confidence 9999999887666666666653 3335567789999999885
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.87 E-value=1e-21 Score=123.74 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=87.6
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.|.||+|.. ...+.+++ +.+.+|||+|++++..++..++++++++++|+|++++++++.+..|+..+.... ++.
T Consensus 29 ~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~ 106 (193)
T cd04118 29 PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHC 106 (193)
T ss_pred CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCC
Confidence 588999944 35566744 677899999999999999999999999999999999999999988887765432 578
Q ss_pred eEEEEEecCCCCCCC-CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM-SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++|+||+|+.... ....+.......+....+.+++++||++|.
T Consensus 107 piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (193)
T cd04118 107 KIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQ 152 (193)
T ss_pred CEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999986421 111111111112223345679999999874
No 103
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.87 E-value=1.4e-21 Score=120.05 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=85.0
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ +.+.+.+|||+|++++..+++.+++.++++++|+|++++.++..+..|+..+.+.. ++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~ 105 (161)
T cd04124 28 QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEI 105 (161)
T ss_pred CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence 4567776443 34444 45688999999999999999999999999999999999999999988887775432 578
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ..+.. .+....+++++++||++|.
T Consensus 106 p~ivv~nK~Dl~~~~-~~~~~-----~~~~~~~~~~~~~Sa~~~~ 144 (161)
T cd04124 106 PCIVVANKIDLDPSV-TQKKF-----NFAEKHNLPLYYVSAADGT 144 (161)
T ss_pred cEEEEEECccCchhH-HHHHH-----HHHHHcCCeEEEEeCCCCC
Confidence 999999999985421 11111 1122335689999999874
No 104
>PLN03118 Rab family protein; Provisional
Probab=99.87 E-value=1.5e-21 Score=124.72 Aligned_cols=121 Identities=26% Similarity=0.366 Sum_probs=88.6
Q ss_pred CCcccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-CC
Q psy6566 3 EVVHTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-ED 77 (126)
Q Consensus 3 ~~~~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-~~ 77 (126)
.+..+.||++... ..+.++ .+.+.+|||+|++++..++..+++.++++++|+|+++++++..+..+|...+.. ..
T Consensus 38 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~ 117 (211)
T PLN03118 38 SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST 117 (211)
T ss_pred CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence 4557889999655 445553 468899999999999999999999999999999999999999998766554432 22
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.|+++++||+|+...... ............++.++++||++|.
T Consensus 118 ~~~~~~ilv~NK~Dl~~~~~i---~~~~~~~~~~~~~~~~~e~SAk~~~ 163 (211)
T PLN03118 118 NQDCVKMLVGNKVDRESERDV---SREEGMALAKEHGCLFLECSAKTRE 163 (211)
T ss_pred CCCCCEEEEEECccccccCcc---CHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 356899999999998753211 1111111222345689999999873
No 105
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.87 E-value=1.1e-21 Score=120.24 Aligned_cols=115 Identities=23% Similarity=0.347 Sum_probs=87.6
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.++ ...+.+||++|++.+...++.+++.++++++|+|++++.++..+..|+..+.... .+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 106 (161)
T cd04113 28 DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNI 106 (161)
T ss_pred CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence 6678888544 444553 3689999999999999999999999999999999999999999999887764432 3689
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....++.. .....+++++++||++|.
T Consensus 107 ~iivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd04113 107 VVILVGNKSDLADQREVTFLEASR-----FAQENGLLFLETSALTGE 148 (161)
T ss_pred eEEEEEEchhcchhccCCHHHHHH-----HHHHcCCEEEEEECCCCC
Confidence 99999999998653 22222221 122334789999999874
No 106
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.87 E-value=9.5e-22 Score=121.49 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=88.6
Q ss_pred ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++.. ...+.+ ..+.+++|||+|+++|..+++.+++.++++++|+|.+++++++....|...+.+.....+.|
T Consensus 29 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p 108 (168)
T cd04177 29 SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP 108 (168)
T ss_pred ccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 678898833 455666 34789999999999999999999999999999999999999999998887776543346899
Q ss_pred EEEEEecCCCCCCC--CHHHHHhhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQ-QWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.... ...+... ..+.. .++++++||++|.
T Consensus 109 iiiv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 109 MVLVGNKADLEDDRQVSREDGVS-----LSQQWGNVPFYETSARKRT 150 (168)
T ss_pred EEEEEEChhccccCccCHHHHHH-----HHHHcCCceEEEeeCCCCC
Confidence 99999999986532 1111111 11122 3689999999873
No 107
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=9.3e-22 Score=123.40 Aligned_cols=122 Identities=15% Similarity=0.220 Sum_probs=86.4
Q ss_pred CCc-ccCCccCceE-EEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566 3 EVV-HTSPTIGSNV-EEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE 76 (126)
Q Consensus 3 ~~~-~~~pTi~~~~-~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~ 76 (126)
++. .+.||++... ..+... .+.+.+|||+|++.+..+++.+++.+|++++|+|++++++|+++.. |+..+....
T Consensus 24 ~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 103 (187)
T cd04132 24 KFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC 103 (187)
T ss_pred cCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 344 6789988553 344443 4689999999999999999999999999999999999999999865 555443322
Q ss_pred CCCCCeEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
++.|+++++||+|+...... ..+.......++...++ +++++||++|.
T Consensus 104 --~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 104 --PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred --CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 57899999999998653210 01111111122223344 79999999874
No 108
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.87 E-value=9.6e-22 Score=121.92 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=85.4
Q ss_pred ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (126)
.|.||++... ..+.++ .+.+.+|||+|++.+..++..++++++++++|+|++++++|+.+.. |+..+.+.. ++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~ 103 (174)
T smart00174 26 DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC--PNT 103 (174)
T ss_pred CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCC
Confidence 6778887433 445553 3579999999999999999999999999999999999999999864 555554432 689
Q ss_pred eEEEEEecCCCCCCCC-HHH--------HHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMS-PVE--------ISNLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~-~~~--------v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
|+++++||+|+..... ... +........++..+ .++++|||++|.
T Consensus 104 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 104 PIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999999865321 011 11111112233344 389999999874
No 109
>PLN03108 Rab family protein; Provisional
Probab=99.86 E-value=4.5e-21 Score=122.46 Aligned_cols=115 Identities=24% Similarity=0.320 Sum_probs=88.8
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+++.. ..+.+. .+.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+..|+..+.... .++.
T Consensus 34 ~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~ 112 (210)
T PLN03108 34 VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANM 112 (210)
T ss_pred CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCC
Confidence 5778998654 456663 4678999999999999999999999999999999999999999988887765432 2578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++.. .+++..+++++++||++|.
T Consensus 113 piiiv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~ 154 (210)
T PLN03108 113 TIMLIGNKCDLAHRRAVSTEEGE-----QFAKEHGLIFMEASAKTAQ 154 (210)
T ss_pred cEEEEEECccCccccCCCHHHHH-----HHHHHcCCEEEEEeCCCCC
Confidence 99999999998653 2222222 2223446789999999873
No 110
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=8.1e-21 Score=117.58 Aligned_cols=111 Identities=21% Similarity=0.191 Sum_probs=84.1
Q ss_pred cccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 5 VHTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 5 ~~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
.+|.||++.. ...+.+.+ +.+.+||++|++.+..++..+++.+|++++|+|++++.+++.+..|+..+... .+
T Consensus 32 ~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~ 108 (169)
T cd01892 32 NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GE 108 (169)
T ss_pred ccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CC
Confidence 4688999954 35566644 68999999999999999999999999999999999999999888877655222 47
Q ss_pred CeEEEEEecCCCCCCCC-----HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSMS-----PVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~-----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
+|+++++||+|+.+... ..++... .++ .++++||++|+
T Consensus 109 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 109 IPCLFVAAKADLDEQQQRYEVQPDEFCRK--------LGLPPPLHFSSKLGD 152 (169)
T ss_pred CeEEEEEEcccccccccccccCHHHHHHH--------cCCCCCEEEEeccCc
Confidence 99999999999864321 1222221 222 35899999874
No 111
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=1.2e-20 Score=115.64 Aligned_cols=116 Identities=24% Similarity=0.332 Sum_probs=89.6
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ +.+.+.+|||+|++.+...+..+++.+|++++|+|++++.+++.+..|+..+.+.....+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 107 (161)
T cd01863 28 DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDI 107 (161)
T ss_pred ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCC
Confidence 4778888654 44455 3478999999999999999999999999999999999999999998887777665445789
Q ss_pred eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... .....+++++++||++|.
T Consensus 108 ~~~iv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01863 108 VKMLVGNKIDKENREVTREEGLK-----FARKHNMLFIETSAKTRD 148 (161)
T ss_pred cEEEEEECCcccccccCHHHHHH-----HHHHcCCEEEEEecCCCC
Confidence 99999999999742 22222222 122346789999999874
No 112
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.85 E-value=2.9e-21 Score=118.96 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=83.0
Q ss_pred ccCCccC-ceEEEEEEC--CEEEEEEEcCCCcc-hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-CCC
Q psy6566 6 HTSPTIG-SNVEEVIWK--NIHFIMWDLGGQQS-LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-LSK 80 (126)
Q Consensus 6 ~~~pTi~-~~~~~~~~~--~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (126)
.+.||++ .....+.++ .+.+++|||+|++. +......+++.+|++++|+|++++++++.+..|+..+.+... ..+
T Consensus 27 ~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 106 (165)
T cd04146 27 EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDRE 106 (165)
T ss_pred ccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6778886 334555563 45789999999986 345677789999999999999999999999887766654321 357
Q ss_pred CeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 81 AAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 81 ~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
.|+++++||+|+.... ...+. ..+.+..+.+++++||++|
T Consensus 107 ~piilv~nK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~Sa~~~ 148 (165)
T cd04146 107 IPVILVGNKADLLHYRQVSTEEG-----EKLASELGCLFFEVSAAED 148 (165)
T ss_pred CCEEEEEECCchHHhCccCHHHH-----HHHHHHcCCEEEEeCCCCC
Confidence 9999999999985431 21211 1122233468999999986
No 113
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=7.9e-21 Score=120.34 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=84.9
Q ss_pred CCCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHH
Q psy6566 2 NEVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEE 68 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~ 68 (126)
++|. .|.||++... ..+.+++ +.+++|||+|.+.+.. ....+++.+|++++|||++++++++.+..|
T Consensus 23 ~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~ 102 (198)
T cd04142 23 QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLL 102 (198)
T ss_pred CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHH
Confidence 3555 6889998443 4555655 6788999999765321 133457899999999999999999999888
Q ss_pred HHHHhCCC--CCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 69 LYKMLNHE--DLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 69 ~~~~~~~~--~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+..+.+.. ...++|+++++||+|+.... ..++.... ..+..++++++|||++|.
T Consensus 103 ~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 103 RQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVL----VRKSWKCGYLECSAKYNW 160 (198)
T ss_pred HHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHH----HHHhcCCcEEEecCCCCC
Confidence 88776543 23679999999999996531 11111111 112346789999999884
No 114
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=2e-20 Score=114.55 Aligned_cols=115 Identities=19% Similarity=0.356 Sum_probs=87.5
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+.+|||||++.+..++..+++.++++++|+|++++++++.+..|+..+..... .+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 106 (161)
T cd01861 28 QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDV 106 (161)
T ss_pred cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCC
Confidence 567888754 45555544 6799999999999999999999999999999999999999999998887765432 369
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++.... .+..+++++++||++|.
T Consensus 107 ~iilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01861 107 IIVLVGNKTDLSDKRQVSTEEGEKK-----AKELNAMFIETSAKAGH 148 (161)
T ss_pred EEEEEEEChhccccCccCHHHHHHH-----HHHhCCEEEEEeCCCCC
Confidence 99999999999542 122222211 12334789999999874
No 115
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=2.1e-20 Score=114.67 Aligned_cols=115 Identities=23% Similarity=0.374 Sum_probs=89.2
Q ss_pred ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|.. ...+.+ ..+.+.+||++|++++...+..++++++++++|+|+++++++..+..|+..+..... ++.
T Consensus 29 ~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 107 (163)
T cd01860 29 NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNI 107 (163)
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCC
Confidence 478999843 455666 447899999999999999999999999999999999999999999998888766543 679
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+.... ....++.++++||++|.
T Consensus 108 ~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 149 (163)
T cd01860 108 IIALVGNKADLESKRQVSTEEAQEY-----ADENGLLFFETSAKTGE 149 (163)
T ss_pred eEEEEEECccccccCcCCHHHHHHH-----HHHcCCEEEEEECCCCC
Confidence 99999999998742 222222221 12224679999999874
No 116
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.84 E-value=1.6e-20 Score=120.74 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=84.6
Q ss_pred cccCCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhcc-CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 5 VHTSPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYT-NTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 5 ~~~~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
..+.||++ +....+.+ +...+.+|||+|++ ......+++ .+|++++|||++++.+|+.+.+|+..+.+.....
T Consensus 28 ~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~ 105 (221)
T cd04148 28 HAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLE 105 (221)
T ss_pred cCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 46778885 55667777 55789999999998 333445666 8999999999999999999988887776544346
Q ss_pred CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++|+++|+||+|+..... +........+...+++++++||++|.
T Consensus 106 ~~piilV~NK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~SA~~~~ 149 (221)
T cd04148 106 DRPIILVGNKSDLARSRE---VSVQEGRACAVVFDCKFIETSAGLQH 149 (221)
T ss_pred CCCEEEEEEChhccccce---ecHHHHHHHHHHcCCeEEEecCCCCC
Confidence 799999999999865321 11111112223345679999999873
No 117
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.84 E-value=8.2e-21 Score=117.74 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=85.6
Q ss_pred CCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 3 EVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 3 ~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
++. .+.||++ .....+.+++ +.+.+|||+|++.+...+..+++.++++++|+|++++.+|+++...|...+... .
T Consensus 24 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~ 102 (174)
T cd04135 24 AFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A 102 (174)
T ss_pred CCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C
Confidence 344 6788887 3334556644 568899999999999999999999999999999999999998865444444332 3
Q ss_pred CCCeEEEEEecCCCCCCCCHH---------HHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPV---------EISNLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~---------~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
++.|+++++||+|+.+..... .+....+...++..+ .++++|||++|.
T Consensus 103 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 103 PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 689999999999986431111 111111112222233 379999999874
No 118
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.84 E-value=2.1e-20 Score=114.63 Aligned_cols=115 Identities=23% Similarity=0.377 Sum_probs=88.7
Q ss_pred ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+.+ +.+.+||++|++.+...++.+++.+|++++|+|++++.+++.+.+|+..+..... +++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~ 106 (164)
T smart00175 28 QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNV 106 (164)
T ss_pred CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCC
Confidence 5668888554 4455544 6899999999999999999999999999999999999999999888877765432 579
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+. ...+.+... .+..+++++++||++|.
T Consensus 107 pivvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 148 (164)
T smart00175 107 VIMLVGNKSDLEDQRQVSREEAEAF-----AEEHGLPFFETSAKTNT 148 (164)
T ss_pred eEEEEEEchhcccccCCCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence 99999999998652 222222221 22345679999999873
No 119
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=1.8e-19 Score=114.16 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=88.3
Q ss_pred ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++ .....+.+++ +.+.+||++|++.+..++..+++.++++++|+|++++.+++.+..|+..+.+.....++|
T Consensus 27 ~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 106 (198)
T cd04147 27 KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP 106 (198)
T ss_pred cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5678876 5556667755 789999999999999999999999999999999999999999988887776654445799
Q ss_pred EEEEEecCCCCCCCC---HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMS---PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+..... .....+.. ....+..++++||++|.
T Consensus 107 iilv~NK~Dl~~~~~~v~~~~~~~~~----~~~~~~~~~~~Sa~~g~ 149 (198)
T cd04147 107 IVVVGNKADSLEEERQVPAKDALSTV----ELDWNCGFVETSAKDNE 149 (198)
T ss_pred EEEEEEccccccccccccHHHHHHHH----HhhcCCcEEEecCCCCC
Confidence 999999999865211 11111111 01223578999999874
No 120
>PLN00023 GTP-binding protein; Provisional
Probab=99.82 E-value=1.8e-19 Score=120.14 Aligned_cols=93 Identities=19% Similarity=0.352 Sum_probs=76.8
Q ss_pred CCc-ccCCccCceE--EEEEEC---------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH
Q psy6566 3 EVV-HTSPTIGSNV--EEVIWK---------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64 (126)
Q Consensus 3 ~~~-~~~pTi~~~~--~~~~~~---------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 64 (126)
.|. .+.||+|... +.+.++ .+.++||||+|+++|+.++..++++++++|+|+|++++.++++
T Consensus 45 ~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFen 124 (334)
T PLN00023 45 SSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTS 124 (334)
T ss_pred CcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHH
Confidence 444 6889999654 555552 3679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCC-----------CCCCeEEEEEecCCCCCC
Q psy6566 65 TKEELYKMLNHED-----------LSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 65 ~~~~~~~~~~~~~-----------~~~~piilv~nK~D~~~~ 95 (126)
+.+|+..+..... ..++|+++|+||+||...
T Consensus 125 L~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 125 LQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred HHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999888765421 135899999999999653
No 121
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=1.1e-19 Score=111.34 Aligned_cols=116 Identities=24% Similarity=0.305 Sum_probs=88.6
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ....+ +.+.+.+|||+|++.+...+..+++.++++++++|++++.++.....|+..+.+.....++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 107 (164)
T cd04139 28 DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP 107 (164)
T ss_pred ccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 6678877443 33444 44789999999999999999999999999999999999999999999888887764446799
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+... ......... .+..+++++++||++|+
T Consensus 108 iiiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 148 (164)
T cd04139 108 LLLVGNKCDLEDKRQVSSEEAANL-----ARQWGVPYVETSAKTRQ 148 (164)
T ss_pred EEEEEEccccccccccCHHHHHHH-----HHHhCCeEEEeeCCCCC
Confidence 9999999998652 122211111 12234689999999874
No 122
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=2.3e-19 Score=110.68 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=85.0
Q ss_pred ccCCccC--ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIG--SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++ +....+.+++ +.+.+||++|++.+...+..+++.++++++|+|++++++++.+..|+..+.... ..+.
T Consensus 35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~ 113 (169)
T cd04114 35 GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKV 113 (169)
T ss_pred CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCC
Confidence 5678887 4445566654 678999999999999999999999999999999999999988888776553332 2468
Q ss_pred eEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+...... ..... .+.+....++++|||++|.
T Consensus 114 ~~i~v~NK~D~~~~~~i~~~~~~----~~~~~~~~~~~~~Sa~~~~ 155 (169)
T cd04114 114 ITILVGNKIDLAERREVSQQRAE----EFSDAQDMYYLETSAKESD 155 (169)
T ss_pred eEEEEEECcccccccccCHHHHH----HHHHHcCCeEEEeeCCCCC
Confidence 99999999998653211 11111 1122234679999999874
No 123
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.81 E-value=4.5e-19 Score=110.02 Aligned_cols=122 Identities=18% Similarity=0.310 Sum_probs=84.4
Q ss_pred CCc-ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCCC
Q psy6566 3 EVV-HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHED 77 (126)
Q Consensus 3 ~~~-~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~~ 77 (126)
.+. .|.||++.. ...+.+ +.+.+.+|||+|++.+...+..++++++++++|+|++++++++.+.. |...+.+.
T Consensus 25 ~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~-- 102 (175)
T cd01870 25 QFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-- 102 (175)
T ss_pred CCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--
Confidence 344 688999844 345666 34678999999999999988888999999999999999999988865 44444322
Q ss_pred CCCCeEEEEEecCCCCCCCCH-HHHHh--------hcCcCcccC-CceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSP-VEISN--------LLDLTSIKK-QQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~-~~v~~--------~~~~~~~~~-~~~~~~~~Sa~~~~ 126 (126)
..+.|+++++||+|+...... .++.. ..+...+.. ...++++|||++|.
T Consensus 103 ~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 103 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 257899999999998653211 11110 000111111 23479999999873
No 124
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=2e-19 Score=109.94 Aligned_cols=115 Identities=24% Similarity=0.318 Sum_probs=85.7
Q ss_pred ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+ ..+.+.+||++|++.+..+++.+++.++++++|+|++++++++.+..|+..+.+... .++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~ 106 (162)
T cd04123 28 KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNI 106 (162)
T ss_pred CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCC
Confidence 455677533 344555 346799999999999999999999999999999999999999999888777655432 378
Q ss_pred eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ...++... .+..+.+++++||++|.
T Consensus 107 piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~ 148 (162)
T cd04123 107 SLVIVGNKIDLERQRVVSKSEAEEY-----AKSVGAKHFETSAKTGK 148 (162)
T ss_pred eEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCC
Confidence 999999999987532 22222221 12345678999999873
No 125
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=2.5e-19 Score=110.70 Aligned_cols=117 Identities=17% Similarity=0.265 Sum_probs=86.0
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC---C
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED---L 78 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~---~ 78 (126)
.+.||++... ..+.+. .+.+.+||++|++.+..++..+++.++++++++|++++.+++....|...++.... .
T Consensus 28 ~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
T cd01862 28 QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDP 107 (172)
T ss_pred CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCC
Confidence 5568888543 455553 46788999999999999999999999999999999999999888777766554422 2
Q ss_pred CCCeEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++++||+|+.. ....+....... .....+++++||++|.
T Consensus 108 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 153 (172)
T cd01862 108 ENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAI 153 (172)
T ss_pred CCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCC
Confidence 4799999999999973 222333222211 1223689999999874
No 126
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=3.7e-19 Score=109.72 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=73.4
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
+.+.+.+|||+|++.+...+..+++.++++++|+|++++++++.+..+|...++... ++.|+++++||+|+.+......
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~ 123 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAG 123 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhH
Confidence 668899999999998888888889999999999999999999998654444333322 4789999999999976432111
Q ss_pred HHhhcCcCcc-cCCc-eEEEEeeeeeCC
Q psy6566 101 ISNLLDLTSI-KKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 101 v~~~~~~~~~-~~~~-~~~~~~Sa~~~~ 126 (126)
...... ... +... .++++|||++|.
T Consensus 124 ~~~~~~-~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 124 LEEEML-PIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred HHHHHH-HHHHHHhcccEEEEecccccc
Confidence 111000 000 0111 279999999874
No 127
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=1e-18 Score=111.96 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=91.3
Q ss_pred CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|.+. .|.||++.......+ +.+.+.+|||+|++.+..++..+++.++++++++|+++..++..+..|+..+.+..
T Consensus 32 ~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 111 (215)
T PTZ00132 32 GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC 111 (215)
T ss_pred CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 3454 789999977766555 56899999999999999999999999999999999999999999998887776442
Q ss_pred CCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++++||+|+... ...+.. ......++.++++||++|.
T Consensus 112 --~~~~i~lv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~e~Sa~~~~ 154 (215)
T PTZ00132 112 --ENIPIVLVGNKVDVKDRQVKARQI------TFHRKKNLQYYDISAKSNY 154 (215)
T ss_pred --CCCCEEEEEECccCccccCCHHHH------HHHHHcCCEEEEEeCCCCC
Confidence 57899999999998642 111111 1223345689999999873
No 128
>KOG0096|consensus
Probab=99.80 E-value=1.3e-19 Score=110.84 Aligned_cols=117 Identities=20% Similarity=0.306 Sum_probs=98.2
Q ss_pred CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|+|+ .|.||+|+......+ +.+++..|||+|+|.+..+...|+-++.+.++|||++.+-...++..|...+.+.+
T Consensus 33 geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~ 112 (216)
T KOG0096|consen 33 GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR 112 (216)
T ss_pred ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh
Confidence 6788 799999988877777 44999999999999999999999999999999999999999999999999888776
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
.++|++++|||.|..... .....-.+...++++++++||+++
T Consensus 113 --~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 113 --ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSN 154 (216)
T ss_pred --cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccc
Confidence 579999999999987632 122223444567889999999875
No 129
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=5.5e-19 Score=110.15 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=88.8
Q ss_pred ccCCccCc-eEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGS-NVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++. ....+.+.+ ..+++|||+|++++...+..++..++++++++|+++..+++.+..++..+++.....+.|
T Consensus 29 ~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 108 (180)
T cd04137 29 SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP 108 (180)
T ss_pred ccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 57788874 355666654 567899999999999999999999999999999999999999999988888765446789
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+... ....+.... ....+.+++++||++|.
T Consensus 109 ~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 149 (180)
T cd04137 109 IVLVGNKSDLHTQRQVSTEEGKEL-----AESWGAAFLESSARENE 149 (180)
T ss_pred EEEEEEchhhhhcCccCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence 9999999998642 121121111 12234679999999873
No 130
>KOG0393|consensus
Probab=99.79 E-value=8.2e-20 Score=113.76 Aligned_cols=122 Identities=20% Similarity=0.297 Sum_probs=88.4
Q ss_pred CCCc-ccCCccCce-EEEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCC
Q psy6566 2 NEVV-HTSPTIGSN-VEEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNH 75 (126)
Q Consensus 2 ~~~~-~~~pTi~~~-~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~ 75 (126)
|.|+ .|.||+--+ ...+.+ +.+.+.+|||+||+.|..+++..+..+|.++++|++.++.+++++. +|+-++.+.
T Consensus 27 ~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~ 106 (198)
T KOG0393|consen 27 NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH 106 (198)
T ss_pred CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh
Confidence 3455 899999933 344555 3477999999999999999888999999999999999999999974 455555444
Q ss_pred CCCCCCeEEEEEecCCCCCCC-CHHHH--------HhhcCcCcccCCc-eEEEEeeeeeC
Q psy6566 76 EDLSKAAVLIYANKQDIKNSM-SPVEI--------SNLLDLTSIKKQQ-WHIQSCCALTG 125 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~~~-~~~~v--------~~~~~~~~~~~~~-~~~~~~Sa~~~ 125 (126)
. ++.|+++||+|.||.... ..+.. ....+...++..+ ..|+||||+++
T Consensus 107 c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq 164 (198)
T KOG0393|consen 107 C--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQ 164 (198)
T ss_pred C--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhh
Confidence 4 899999999999998432 11111 1111222223333 57999999975
No 131
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.79 E-value=5.4e-18 Score=102.97 Aligned_cols=114 Identities=25% Similarity=0.384 Sum_probs=87.9
Q ss_pred cCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 7 TSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 7 ~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
+.||.+.......+ ....+.+||++|++.+...+..+++.++++++|+|++++++++.+..|+..+..... .+.|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p 107 (159)
T cd00154 29 YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIP 107 (159)
T ss_pred cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCc
Confidence 56888866555444 347899999999999999999999999999999999999999999987777765532 5789
Q ss_pred EEEEEecCCCC--CCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIK--NSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+. .....+++.... ...+.+++++||++|.
T Consensus 108 ~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~ 148 (159)
T cd00154 108 IILVGNKIDLEDQRQVSTEEAQQFA-----KENGLLFFETSAKTGE 148 (159)
T ss_pred EEEEEEcccccccccccHHHHHHHH-----HHcCCeEEEEecCCCC
Confidence 99999999995 233333333222 2246789999999863
No 132
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.78 E-value=1.9e-18 Score=105.44 Aligned_cols=116 Identities=24% Similarity=0.237 Sum_probs=88.0
Q ss_pred ccCCccC-ceEEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIG-SNVEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||.+ .....+.++ ...+++||++|++.+...+..+++.++++++|+|+++++++.++..++..+.........|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 106 (160)
T cd00876 27 EYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP 106 (160)
T ss_pred CcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6677877 333445554 4789999999999999999999999999999999999999999999888887654335799
Q ss_pred EEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.... ..+.+... ....+.+++++||++|.
T Consensus 107 ~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~ 147 (160)
T cd00876 107 IVLVGNKCDLENERQVSKEEGKAL-----AKEWGCPFIETSAKDNI 147 (160)
T ss_pred EEEEEECCcccccceecHHHHHHH-----HHHcCCcEEEeccCCCC
Confidence 99999999987521 11222111 12233679999999873
No 133
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=1.1e-18 Score=107.77 Aligned_cols=120 Identities=19% Similarity=0.282 Sum_probs=82.8
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||+.... ..+.. ..+.+++||++|++.+...+..+++.++++++|+|++++.++......|...+.... .+.|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p 106 (171)
T cd00157 28 EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVP 106 (171)
T ss_pred CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCC
Confidence 5667776332 33444 457899999999999888888889999999999999998888887664444433322 4799
Q ss_pred EEEEEecCCCCCCCCHH--------HHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPV--------EISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~--------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
+++++||+|+....... .+............+. +++++||++|.
T Consensus 107 ~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 107 IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 99999999987643211 0111111122222333 89999999874
No 134
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.77 E-value=1.2e-18 Score=109.48 Aligned_cols=123 Identities=16% Similarity=0.257 Sum_probs=83.7
Q ss_pred CCCc-ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~ 76 (126)
|.+. .+.||++.. ...+.+. .+.+.+|||+|++.+...++.+++.++++++++|++++++++++.. |+..+.+..
T Consensus 24 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~ 103 (187)
T cd04129 24 GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC 103 (187)
T ss_pred CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 3444 567887743 3455664 3668999999999988777778899999999999999999999975 555554332
Q ss_pred CCCCCeEEEEEecCCCCCCCCH-------HHHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSP-------VEISNLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~-------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
+++|+++++||+|+...... ..+.......+++..+ .++++|||++|.
T Consensus 104 --~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 104 --PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred --CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 57999999999998542100 0000011111222233 379999999884
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=2.3e-17 Score=101.09 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=72.6
Q ss_pred CCccCceEEEEEEC-CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 8 SPTIGSNVEEVIWK-NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 8 ~pTi~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
.+|++.....+.+. +..+.+|||||++++......+++++|++++|+|+++.. .......+..+ +.. ...|++++
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~-~~~~~~~~~~~-~~~--~~~~~ilv 110 (164)
T cd04171 35 GITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI-MPQTREHLEIL-ELL--GIKRGLVV 110 (164)
T ss_pred CceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCc-cHhHHHHHHHH-HHh--CCCcEEEE
Confidence 34666666666775 789999999999999877777889999999999987621 11122222211 111 22489999
Q ss_pred EecCCCCCCCCHHHHHhhcCcCccc--CCceEEEEeeeeeCC
Q psy6566 87 ANKQDIKNSMSPVEISNLLDLTSIK--KQQWHIQSCCALTGE 126 (126)
Q Consensus 87 ~nK~D~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~Sa~~~~ 126 (126)
+||+|+.+................. ....+++++||++|+
T Consensus 111 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 111 LTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 9999997632111111111111111 135689999999874
No 136
>KOG4252|consensus
Probab=99.74 E-value=2.2e-20 Score=113.58 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=91.0
Q ss_pred CCCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|-|. .|.-|||+.. +.+++ +.+...+|||+||+.|..+-..|+++|.+.++||..+++.||+....|..++....
T Consensus 43 gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~ 122 (246)
T KOG4252|consen 43 GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET 122 (246)
T ss_pred cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh
Confidence 4566 8899999554 55555 77889999999999999999999999999999999999999999999998886654
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeee
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALT 124 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 124 (126)
..+|.+++-||+|+.+.. .+...+.+..++..+..++.+|+++
T Consensus 123 --~~IPtV~vqNKIDlveds---~~~~~evE~lak~l~~RlyRtSvke 165 (246)
T KOG4252|consen 123 --ERIPTVFVQNKIDLVEDS---QMDKGEVEGLAKKLHKRLYRTSVKE 165 (246)
T ss_pred --ccCCeEEeeccchhhHhh---hcchHHHHHHHHHhhhhhhhhhhhh
Confidence 689999999999997631 1111111222233444567777764
No 137
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=7.8e-17 Score=98.48 Aligned_cols=111 Identities=18% Similarity=0.270 Sum_probs=89.1
Q ss_pred CccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 9 PTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 9 pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
+|+...+..+.+ ++..+.++|||||++|+-+|+.+.+++.+.++++|.+.+..+ .....+..+... ..+|+++.+
T Consensus 53 tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~ 128 (187)
T COG2229 53 TTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAI 128 (187)
T ss_pred eeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEe
Confidence 567777777888 559999999999999999999999999999999999998887 444434444333 239999999
Q ss_pred ecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 88 NKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 88 nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
||+|+....+.+++.+.+.... ..+++++.+|.+++
T Consensus 129 NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~e~~ 164 (187)
T COG2229 129 NKQDLFDALPPEKIREALKLEL---LSVPVIEIDATEGE 164 (187)
T ss_pred eccccCCCCCHHHHHHHHHhcc---CCCceeeeecccch
Confidence 9999999888888887776442 45678898888653
No 138
>KOG3883|consensus
Probab=99.71 E-value=1e-16 Score=95.39 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=92.8
Q ss_pred ccCCccC-ceEEEEEE---CCEEEEEEEcCCCcch-HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 6 HTSPTIG-SNVEEVIW---KNIHFIMWDLGGQQSL-RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 6 ~~~pTi~-~~~~~~~~---~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
++.||++ ++...+.- ....+.++||+|.... ..+-.+|+.-+|++++|++..+++||+.+..+-+.+.+....+.
T Consensus 39 e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKE 118 (198)
T KOG3883|consen 39 ELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKE 118 (198)
T ss_pred ccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccc
Confidence 7889999 88888877 3357999999998877 55778899999999999999999999988765555655555578
Q ss_pred CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeee
Q psy6566 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALT 124 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 124 (126)
+|+++++||+|+.++ .++....+..|++..++..++++|++
T Consensus 119 vpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 119 VPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred ccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEecc
Confidence 999999999999764 33444445567777788889998875
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.70 E-value=3.8e-16 Score=98.60 Aligned_cols=105 Identities=18% Similarity=0.225 Sum_probs=72.2
Q ss_pred EEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC
Q psy6566 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM 96 (126)
Q Consensus 17 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 96 (126)
.+..++..+.+|||||++.|...+..+++.+|++++|+|+++. .+.....++..... .++|+++++||+|+....
T Consensus 59 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 59 AVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 3444889999999999999999999999999999999999863 23333333443322 468999999999996532
Q ss_pred CH---HHHHhhcC-c-CcccCCceEEEEeeeeeCC
Q psy6566 97 SP---VEISNLLD-L-TSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 97 ~~---~~v~~~~~-~-~~~~~~~~~~~~~Sa~~~~ 126 (126)
.. .++...+. . ......+++++++||++|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~ 168 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGW 168 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhccc
Confidence 21 11222110 0 0112346789999999874
No 140
>KOG0077|consensus
Probab=99.70 E-value=1.5e-16 Score=95.77 Aligned_cols=122 Identities=28% Similarity=0.484 Sum_probs=102.1
Q ss_pred CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
..++.||.......+.+++++++..|.+|+...+..|..|+..++++++.+|+.+.+.|.+++..+..++......+.|+
T Consensus 45 l~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~ 124 (193)
T KOG0077|consen 45 LGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPF 124 (193)
T ss_pred ccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEEecCCCCCCCCHHHHHhhcC------------cCcccCCceEEEEeeeeeC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLD------------LTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~------------~~~~~~~~~~~~~~Sa~~~ 125 (126)
++.+||+|.+...+.++...... +.-...+.+..+.||...+
T Consensus 125 lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~ 178 (193)
T KOG0077|consen 125 LILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRK 178 (193)
T ss_pred eeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEcc
Confidence 99999999998765554322221 1112335567888887643
No 141
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.70 E-value=3.7e-16 Score=97.26 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=68.9
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
++..+.+|||||++.+...+..+++.+|++++|+|+++..++.....|. .... .++|+++++||+|+.+.. ...
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~-~~~ 138 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSAD-PER 138 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCC-HHH
Confidence 4678999999999999999999999999999999998876665554433 2222 468999999999986532 111
Q ss_pred HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 101 ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 101 v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
....+... .......++++||++|+
T Consensus 139 ~~~~~~~~-~~~~~~~~~~~Sa~~g~ 163 (179)
T cd01890 139 VKQQIEDV-LGLDPSEAILVSAKTGL 163 (179)
T ss_pred HHHHHHHH-hCCCcccEEEeeccCCC
Confidence 11111110 01112358999999884
No 142
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.69 E-value=4.8e-16 Score=98.87 Aligned_cols=94 Identities=29% Similarity=0.366 Sum_probs=72.0
Q ss_pred CCcccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCC-cEEEEEEECCCc-ccHHHHHHHHHHHhCCC
Q psy6566 3 EVVHTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNT-EFVILVIDSTDR-ERISLTKEELYKMLNHE 76 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~ 76 (126)
.+..+.|++..+...+.. ++..+.+||+||+++++..+..+++.+ +++|||+|+++. .++..+..++..++...
T Consensus 24 ~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~ 103 (203)
T cd04105 24 KYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDL 103 (203)
T ss_pred CCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHH
Confidence 344455555555544444 368899999999999999999999998 999999999987 67788777777665432
Q ss_pred C--CCCCeEEEEEecCCCCCCC
Q psy6566 77 D--LSKAAVLIYANKQDIKNSM 96 (126)
Q Consensus 77 ~--~~~~piilv~nK~D~~~~~ 96 (126)
. .+++|+++++||+|+....
T Consensus 104 ~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 104 EKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred hhccCCCCEEEEecchhhcccC
Confidence 1 1579999999999987643
No 143
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.68 E-value=8.8e-16 Score=94.59 Aligned_cols=111 Identities=15% Similarity=0.088 Sum_probs=71.2
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchH---------HHHHhhccCCcEEEEEEECCCccc--HHHHHHHHHHHhCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR---------AAWSTYYTNTEFVILVIDSTDRER--ISLTKEELYKMLNHED 77 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~~~~~~~~~~~~ 77 (126)
+|.+.....+..++..+.+|||||+.... .........++++++|+|+++..+ ++....|+..+.+..
T Consensus 33 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~- 111 (168)
T cd01897 33 TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF- 111 (168)
T ss_pred cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-
Confidence 45666666666678999999999984210 111111234689999999988654 355555565553321
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+.......+. .........++++|||++|.
T Consensus 112 -~~~pvilv~NK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 112 -KNKPVIVVLNKIDLLTFEDLSEI-----EEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred -CcCCeEEEEEccccCchhhHHHH-----HHhhhhccCceEEEEecccC
Confidence 47899999999999764222211 11223345689999999884
No 144
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=9.9e-16 Score=103.71 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=79.2
Q ss_pred CccCceEEEEEE-CCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-CCC
Q psy6566 9 PTIGSNVEEVIW-KNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-DLS 79 (126)
Q Consensus 9 pTi~~~~~~~~~-~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (126)
+|+......+.+ +...+.+||+||... ....+..+++.++++++|+|+++.+++++...|..++.... .+.
T Consensus 191 TT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~ 270 (335)
T PRK12299 191 TTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELA 270 (335)
T ss_pred ceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 577777777777 667899999999732 33344556788999999999998878888877776664432 235
Q ss_pred CCeEEEEEecCCCCCCCCHH-HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNSMSPV-EISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.|+++++||+|+....... ..... +....+.+++++||++++
T Consensus 271 ~kp~IIV~NKiDL~~~~~~~~~~~~~----~~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 271 DKPRILVLNKIDLLDEEEEREKRAAL----ELAALGGPVFLISAVTGE 314 (335)
T ss_pred cCCeEEEEECcccCCchhHHHHHHHH----HHHhcCCCEEEEEcCCCC
Confidence 78999999999987542111 11111 112234679999999874
No 145
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.67 E-value=9.3e-16 Score=104.18 Aligned_cols=89 Identities=24% Similarity=0.458 Sum_probs=80.8
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCC
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNH 75 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~ 75 (126)
-..||+|+....+.+++..+.+||++|+...+..|.+++.++++++||+|+++ .+.+.++...+..++..
T Consensus 167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 35699999999999999999999999999999999999999999999999986 35788888899999988
Q ss_pred CCCCCCeEEEEEecCCCCC
Q psy6566 76 EDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~ 94 (126)
+...+.|+++++||.|+..
T Consensus 247 ~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 247 RWFANTSIILFLNKIDLFE 265 (342)
T ss_pred ccccCCcEEEEEecHHhHH
Confidence 8888999999999999653
No 146
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.66 E-value=8.6e-16 Score=103.52 Aligned_cols=89 Identities=22% Similarity=0.431 Sum_probs=80.3
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc----------ccHHHHHHHHHHHhCC
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR----------ERISLTKEELYKMLNH 75 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~----------~~~~~~~~~~~~~~~~ 75 (126)
-..||+|+....+.+++..+.+||++||+..+..|.+++.++++++||+|+++- +.+.+....+..++..
T Consensus 144 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 144 ARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred eecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 346899999999999999999999999999999999999999999999999863 6788888889999888
Q ss_pred CCCCCCeEEEEEecCCCCC
Q psy6566 76 EDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~ 94 (126)
+...+.|+++++||+|+..
T Consensus 224 ~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 224 RWFANTSIILFLNKKDLFE 242 (317)
T ss_pred ccccCCCEEEEccChHHHH
Confidence 7778999999999999643
No 147
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.66 E-value=1.9e-15 Score=93.22 Aligned_cols=115 Identities=19% Similarity=0.144 Sum_probs=73.0
Q ss_pred CccCceEEEEEECCE-EEEEEEcCCCcc----h---HHHHHhhccCCcEEEEEEECCCc-ccHHHHHHHHHHHhCCC-CC
Q psy6566 9 PTIGSNVEEVIWKNI-HFIMWDLGGQQS----L---RAAWSTYYTNTEFVILVIDSTDR-ERISLTKEELYKMLNHE-DL 78 (126)
Q Consensus 9 pTi~~~~~~~~~~~~-~~~i~Dt~G~~~----~---~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~-~~ 78 (126)
+|.......+.+++. .+.+|||||+.. . ...+...++.++++++|+|++++ ++++....|...+.... ..
T Consensus 33 ~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (170)
T cd01898 33 TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL 112 (170)
T ss_pred cccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc
Confidence 344444444556554 999999999632 1 12222235579999999999998 78888877766654432 22
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+.............. ......+++++||++|.
T Consensus 113 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 113 LEKPRIVVLNKIDLLDEEELFELLKELL---KELWGKPVFPISALTGE 157 (170)
T ss_pred cccccEEEEEchhcCCchhhHHHHHHHH---hhCCCCCEEEEecCCCC
Confidence 4789999999999865432222111111 11134578999999873
No 148
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.65 E-value=3.5e-15 Score=95.66 Aligned_cols=90 Identities=29% Similarity=0.405 Sum_probs=69.9
Q ss_pred ccCCccCceEEEEEE--C--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVEEVIW--K--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++........ . .+++.+|||+|+++++..++.|+.+++++++++|.+...++.+....|...+......+.
T Consensus 33 ~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (219)
T COG1100 33 GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV 112 (219)
T ss_pred cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCc
Confidence 577898854433333 2 688999999999999999999999999999999999866566665555544444332469
Q ss_pred eEEEEEecCCCCCC
Q psy6566 82 AVLIYANKQDIKNS 95 (126)
Q Consensus 82 piilv~nK~D~~~~ 95 (126)
|+++++||+|+...
T Consensus 113 ~iilv~nK~Dl~~~ 126 (219)
T COG1100 113 PILLVGNKIDLFDE 126 (219)
T ss_pred eEEEEecccccccc
Confidence 99999999999874
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.62 E-value=7.3e-15 Score=88.06 Aligned_cols=118 Identities=26% Similarity=0.331 Sum_probs=83.9
Q ss_pred ccCCccCceEEEEEEC----CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVEEVIWK----NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
...||. ......... +..+.+||++|+..+...+..+++.++++++|+|++++.++.....++..........+.
T Consensus 25 ~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (157)
T cd00882 25 EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENI 103 (157)
T ss_pred ccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCC
Confidence 445665 555555553 788999999999998888888999999999999999988888887763333333334689
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......... ...........+++++||+++.
T Consensus 104 ~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~ 146 (157)
T cd00882 104 PIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred cEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCC
Confidence 999999999987643322211 0011112345689999998763
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.62 E-value=4.9e-15 Score=91.73 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=75.9
Q ss_pred CCccCceEEEEEEC-CEEEEEEEcCCCcch----HH---HHHhhccCCcEEEEEEECCCc------ccHHHHHHHHHHHh
Q psy6566 8 SPTIGSNVEEVIWK-NIHFIMWDLGGQQSL----RA---AWSTYYTNTEFVILVIDSTDR------ERISLTKEELYKML 73 (126)
Q Consensus 8 ~pTi~~~~~~~~~~-~~~~~i~Dt~G~~~~----~~---~~~~~~~~~~~~l~v~d~~~~------~~~~~~~~~~~~~~ 73 (126)
.+|++.....+.++ +..+.+|||||.... +. ....+++.++++++|+|++++ .++.+...+...+.
T Consensus 28 ~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 107 (176)
T cd01881 28 FTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELK 107 (176)
T ss_pred ceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHH
Confidence 35666666667777 899999999996321 11 223457789999999999987 46776666666554
Q ss_pred CCCC------CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 74 NHED------LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 74 ~~~~------~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.... ..+.|+++++||+|+.......... ...........++++||+++.
T Consensus 108 ~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~ 163 (176)
T cd01881 108 LYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPISAKTEE 163 (176)
T ss_pred HhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEEehhhhc
Confidence 3321 1468999999999997542222211 111122334569999998763
No 151
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.61 E-value=9.6e-15 Score=92.82 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=74.0
Q ss_pred cCCccCceEEEEEECC-EEEEEEEcCCCcc---------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIGSNVEEVIWKN-IHFIMWDLGGQQS---------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~-~~~~i~Dt~G~~~---------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
+.||++.....+.+.+ ..+.+|||+|... +...+ ..+..+|++++|+|++++.++.....+.. +++..
T Consensus 72 ~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~-~l~~~ 149 (204)
T cd01878 72 LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEK-VLKEL 149 (204)
T ss_pred cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHH-HHHHc
Confidence 4577777666777744 4899999999722 22222 23678999999999998877776654433 33333
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...++|+++|+||+|+..... .. ........+++++||++|.
T Consensus 150 ~~~~~~viiV~NK~Dl~~~~~---~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 150 GAEDIPMILVLNKIDLLDDEE---LE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred CcCCCCEEEEEEccccCChHH---HH-----HHhhcCCCceEEEEcCCCC
Confidence 335789999999999976421 11 1112334579999999874
No 152
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.61 E-value=5e-15 Score=90.22 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=70.8
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHH------HHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRA------AWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
|+......+.+++..+.+|||||++.+.. ++..++. .++++++|+|+++++... .++..+.+ .++
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~----~~~ 102 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE----LGL 102 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH----cCC
Confidence 45566677777888999999999977653 3555664 999999999998754432 33333322 368
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+........... ...+..+.+++++||++|+
T Consensus 103 ~~iiv~NK~Dl~~~~~~~~~~~----~~~~~~~~~~~~iSa~~~~ 143 (158)
T cd01879 103 PVVVALNMIDEAEKRGIKIDLD----KLSELLGVPVVPTSARKGE 143 (158)
T ss_pred CEEEEEehhhhcccccchhhHH----HHHHhhCCCeEEEEccCCC
Confidence 9999999999965321111111 1112234679999999874
No 153
>KOG1673|consensus
Probab=99.60 E-value=1.2e-15 Score=91.04 Aligned_cols=117 Identities=20% Similarity=0.289 Sum_probs=87.0
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.-|.|++. +++.+ ..+.+.+||.+|++++..+.+...+.+-+++||||.+++.++..+..|..+.-..+. ..+
T Consensus 48 ~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAi 126 (205)
T KOG1673|consen 48 EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAI 126 (205)
T ss_pred HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccc
Confidence 4556777554 66666 447899999999999999999999999999999999999999999999988865543 456
Q ss_pred eEEEEEecCCCCCCCCHH--HHHhhcCcCcccCCceEEEEeeeee
Q psy6566 82 AVLIYANKQDIKNSMSPV--EISNLLDLTSIKKQQWHIQSCCALT 124 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~Sa~~ 124 (126)
| +++|+|.|+--....+ +-....+..+++..+.+.+.||+..
T Consensus 127 P-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~ 170 (205)
T KOG1673|consen 127 P-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH 170 (205)
T ss_pred e-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence 7 6799999864322222 1112223345556677888888864
No 154
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.60 E-value=2.1e-14 Score=97.92 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=75.3
Q ss_pred cCCccCceEEEEEE-CCEEEEEEEcCCC---------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIGSNVEEVIW-KNIHFIMWDLGGQ---------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~~~~~~~~~-~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
+-+|.++....+.+ ++..+.+|||+|. +.|+..+. .++.||++++|+|++++.+.+....+. ..++..
T Consensus 220 ~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l 297 (351)
T TIGR03156 220 LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVE-KVLEEL 297 (351)
T ss_pred CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHH-HHHHHh
Confidence 45788888888888 6789999999997 23443333 478999999999999887776654432 333332
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...+.|+++|+||+|+... ..+..... ...+++.+||++|.
T Consensus 298 ~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAktg~ 338 (351)
T TIGR03156 298 GAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKTGE 338 (351)
T ss_pred ccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccCCC
Confidence 2357899999999998653 22221111 11257999999874
No 155
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.60 E-value=1.3e-14 Score=93.24 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc------cHHHHHHHHHHHhCCCCCCCC
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE------RISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~ 81 (126)
..|+......+..++..+.+|||||+..|...+...++.+|++++|+|+++.. ........+... .. ....
T Consensus 62 g~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ 138 (219)
T cd01883 62 GVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVK 138 (219)
T ss_pred ccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCC
Confidence 34555666677779999999999999888877777788999999999998742 111222222222 21 1336
Q ss_pred eEEEEEecCCCCCC-CC---HHHHHhhc----CcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS-MS---PVEISNLL----DLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~-~~---~~~v~~~~----~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... .. ..++...+ .........++++.+||++|+
T Consensus 139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~ 191 (219)
T cd01883 139 QLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGD 191 (219)
T ss_pred eEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCC
Confidence 89999999999742 11 12222221 111112346789999999884
No 156
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.60 E-value=2.2e-14 Score=88.21 Aligned_cols=112 Identities=22% Similarity=0.160 Sum_probs=72.8
Q ss_pred CccCceEEEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 9 PTIGSNVEEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 9 pTi~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
+|.......+..+ +..+.+|||||++.+..++..+++.+|++++|+|+++..... ....+..+ +. .+.|+++
T Consensus 33 ~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~-~~---~~~p~iv 107 (168)
T cd01887 33 ITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLA-KA---ANVPFIV 107 (168)
T ss_pred eEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHH-HH---cCCCEEE
Confidence 3444444455554 788999999999999999998999999999999998743221 11222222 22 4689999
Q ss_pred EEecCCCCCCCCHHHHHhhc---CcCc--ccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISNLL---DLTS--IKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~---~~~~--~~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.... ...+...+ .... .....++++++||++|+
T Consensus 108 v~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 108 ALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred EEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 99999987532 12221111 1110 11235689999999874
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.60 E-value=1.6e-14 Score=97.74 Aligned_cols=114 Identities=20% Similarity=0.203 Sum_probs=75.9
Q ss_pred CccCceEEEEEECC-EEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCC-C
Q psy6566 9 PTIGSNVEEVIWKN-IHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNH-E 76 (126)
Q Consensus 9 pTi~~~~~~~~~~~-~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~-~ 76 (126)
+|...+...+.+.+ ..+.+|||||... ....+..+++.++++++|+|+++. +++++...|..++... .
T Consensus 190 TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~ 269 (329)
T TIGR02729 190 TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP 269 (329)
T ss_pred CccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh
Confidence 45555666667755 8999999999742 233344456789999999999876 5667766665555332 2
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...+.|+++++||+|+.......++.+.+. +..+.+++++||++++
T Consensus 270 ~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 270 ELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALTGE 315 (329)
T ss_pred hhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccCCc
Confidence 235789999999999976422222222221 2224579999999874
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=2.1e-14 Score=101.49 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=71.7
Q ss_pred ceEEEEEECCEEEEEEEcCCC----------cchHHHH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQ----------QSLRAAW-STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.....+.+++..+.+|||||. +.+..+. ..+++.+|++++|+|+++..++.+.. ++..+.. .+.
T Consensus 249 ~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~ 323 (472)
T PRK03003 249 PVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGR 323 (472)
T ss_pred cceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCC
Confidence 444566678888999999995 3333332 34578999999999999887777664 3443332 468
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+......+..............+++++||++|.
T Consensus 324 piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~ 368 (472)
T PRK03003 324 ALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGR 368 (472)
T ss_pred CEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence 999999999997532222222222212222233578999999884
No 159
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.59 E-value=3e-14 Score=86.19 Aligned_cols=116 Identities=21% Similarity=0.267 Sum_probs=80.3
Q ss_pred ccCCccCceEEE--EEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc-ccHHHHH-HHHHHHhCCCCCC
Q psy6566 6 HTSPTIGSNVEE--VIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR-ERISLTK-EELYKMLNHEDLS 79 (126)
Q Consensus 6 ~~~pTi~~~~~~--~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~ 79 (126)
.+.||++..... +..++ ..+.+||++|++.+..++..+.+.++.++.++|.... .++.... .+...+..... .
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~ 107 (161)
T TIGR00231 29 EYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-S 107 (161)
T ss_pred cCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-c
Confidence 566777755433 55677 7899999999999999999999999999999998876 5565554 34443433322 2
Q ss_pred CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.|+++++||+|+............. ......+++++||++|.
T Consensus 108 ~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~sa~~~~ 150 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKLKTHVAFLF----AKLNGEPIIPLSAETGK 150 (161)
T ss_pred CCcEEEEEEcccCCcchhhHHHHHHH----hhccCCceEEeecCCCC
Confidence 78999999999997632112222221 12233469999999874
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.59 E-value=6.5e-14 Score=87.55 Aligned_cols=112 Identities=23% Similarity=0.230 Sum_probs=76.6
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
|+......+...+..+.+|||||+..+...+..+++.+|++++|+|+.+...... ..++.... . .+.|+++++||
T Consensus 49 ~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~-~---~~~~i~iv~nK 123 (189)
T cd00881 49 TIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIAR-E---GGLPIIVAINK 123 (189)
T ss_pred CeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHH-H---CCCCeEEEEEC
Confidence 3444445556678899999999999999999999999999999999987554332 23333332 2 47899999999
Q ss_pred CCCCCCCCHH----HHHhhcCcCc---------ccCCceEEEEeeeeeCC
Q psy6566 90 QDIKNSMSPV----EISNLLDLTS---------IKKQQWHIQSCCALTGE 126 (126)
Q Consensus 90 ~D~~~~~~~~----~v~~~~~~~~---------~~~~~~~~~~~Sa~~~~ 126 (126)
+|+..+.... ++.+.+.... .+....+++++||++|.
T Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~ 173 (189)
T cd00881 124 IDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGI 173 (189)
T ss_pred CCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCc
Confidence 9997632222 2222222111 12346789999999874
No 161
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.58 E-value=1e-14 Score=101.99 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=73.5
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHhCCCCCCCCeEEE
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL--TKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~piil 85 (126)
..|+......+..++..+.+|||||++.|.......+..+|++++|+|+++.++... ...++ .+.+.. ...|+++
T Consensus 70 g~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIV 146 (426)
T TIGR00483 70 GVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIV 146 (426)
T ss_pred CceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEE
Confidence 345555566666688999999999999987766667889999999999988643211 11111 122221 3358999
Q ss_pred EEecCCCCCCCC--HH----HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMS--PV----EISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~--~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.+... .. ++...+.........++++++||++|+
T Consensus 147 viNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ 193 (426)
T TIGR00483 147 AINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGD 193 (426)
T ss_pred EEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccc
Confidence 999999964211 11 111111111112234789999999874
No 162
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.57 E-value=2.1e-14 Score=100.46 Aligned_cols=109 Identities=19% Similarity=0.116 Sum_probs=71.4
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchHHH-----------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQQSLRAA-----------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.....+..++..+.+|||||..+.... ...+++.+|++++|+|+++..+..+.. ++....+ .+.
T Consensus 210 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~ 284 (429)
T TIGR03594 210 SIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGK 284 (429)
T ss_pred cEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCC
Confidence 334555567789999999997554321 134678999999999999876655542 3333322 468
Q ss_pred eEEEEEecCCCC-CCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIK-NSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+. ......++...+..........+++++||++|.
T Consensus 285 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~ 330 (429)
T TIGR03594 285 ALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQ 330 (429)
T ss_pred cEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCC
Confidence 999999999997 222223333333322223345789999999874
No 163
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.57 E-value=2.8e-14 Score=90.00 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCccCceEEEEEEC--------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHh
Q psy6566 8 SPTIGSNVEEVIWK--------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73 (126)
Q Consensus 8 ~pTi~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~ 73 (126)
.+|++.....+.+. +..+.+|||||+..+........+.+|++++|+|+.+.........+. ..
T Consensus 39 g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~ 116 (192)
T cd01889 39 GITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IG 116 (192)
T ss_pred CCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HH
Confidence 36777666666664 779999999999765444434456789999999998744333322211 11
Q ss_pred CCCCCCCCeEEEEEecCCCCCCCCHH----HHHhhcCcCc--ccCCceEEEEeeeeeCC
Q psy6566 74 NHEDLSKAAVLIYANKQDIKNSMSPV----EISNLLDLTS--IKKQQWHIQSCCALTGE 126 (126)
Q Consensus 74 ~~~~~~~~piilv~nK~D~~~~~~~~----~v~~~~~~~~--~~~~~~~~~~~Sa~~~~ 126 (126)
.. .+.|+++++||+|+....... ++...+.... ....+++++++||++|+
T Consensus 117 ~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~ 172 (192)
T cd01889 117 EI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGG 172 (192)
T ss_pred HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCC
Confidence 11 257999999999987432211 1222111111 01245789999999874
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.55 E-value=8.7e-14 Score=97.74 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=71.6
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHH--------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAA--------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
+|..+....+.+++..+.+|||+|.+.+... ...+++.+|++++|+|++++.++++... +.. ..+
T Consensus 249 tT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~ 321 (449)
T PRK05291 249 TTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEI-LEE------LKD 321 (449)
T ss_pred cccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHH-HHh------cCC
Confidence 3555666778888999999999998654332 2336889999999999998877765433 322 257
Q ss_pred CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|+++|+||+|+..... .. .....+++++||++|+
T Consensus 322 ~piiiV~NK~DL~~~~~---~~--------~~~~~~~i~iSAktg~ 356 (449)
T PRK05291 322 KPVIVVLNKADLTGEID---LE--------EENGKPVIRISAKTGE 356 (449)
T ss_pred CCcEEEEEhhhccccch---hh--------hccCCceEEEEeeCCC
Confidence 89999999999975321 11 1223468999999874
No 165
>PRK15494 era GTPase Era; Provisional
Probab=99.55 E-value=1.7e-13 Score=93.26 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=69.4
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcc-hHHH-------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQS-LRAA-------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~-------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
+.+|.+.....+..++.++.+|||||+.. +..+ ....++.||++++|+|..+ ++.+...++...++.
T Consensus 84 ~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~--- 158 (339)
T PRK15494 84 VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS--- 158 (339)
T ss_pred CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---
Confidence 44565655566777888999999999843 2211 1234789999999999764 444443334333333
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|.++++||+|+... ...++...+... .....++++||++|.
T Consensus 159 ~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg~ 202 (339)
T PRK15494 159 LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSGK 202 (339)
T ss_pred cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCcc
Confidence 24577889999998653 223333322211 112479999999873
No 166
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.55 E-value=2.8e-14 Score=90.80 Aligned_cols=101 Identities=17% Similarity=0.069 Sum_probs=63.2
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS 102 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~ 102 (126)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+........
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence 68999999999999888888888999999999998632111112222222111 234789999999997532111111
Q ss_pred hhcCcCcc--cCCceEEEEeeeeeCC
Q psy6566 103 NLLDLTSI--KKQQWHIQSCCALTGE 126 (126)
Q Consensus 103 ~~~~~~~~--~~~~~~~~~~Sa~~~~ 126 (126)
+....... ....++++++||++|+
T Consensus 160 ~~i~~~~~~~~~~~~~i~~vSA~~g~ 185 (203)
T cd01888 160 EQIKKFVKGTIAENAPIIPISAQLKY 185 (203)
T ss_pred HHHHHHHhccccCCCcEEEEeCCCCC
Confidence 11110000 1134679999999874
No 167
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.54 E-value=1.8e-13 Score=98.84 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=68.3
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS 102 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~ 102 (126)
..+.+|||||++.|...+..+++.||++++|+|+++..+......|+... . .++|+++++||+|+.... ...+.
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~ 143 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVK 143 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHH
Confidence 78999999999999999999999999999999999866665554443322 2 367999999999986532 22221
Q ss_pred hhcCcCcccCCceEEEEeeeeeCC
Q psy6566 103 NLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+... .......++++||++|.
T Consensus 144 ~el~~~-lg~~~~~vi~vSAktG~ 166 (595)
T TIGR01393 144 KEIEEV-IGLDASEAILASAKTGI 166 (595)
T ss_pred HHHHHH-hCCCcceEEEeeccCCC
Confidence 111110 01111258999999874
No 168
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.54 E-value=8.4e-14 Score=97.37 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=73.7
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH-HHHHHHHHhCCCCCCCCeEEE
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL-TKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piil 85 (126)
...|+......+..++..+.+|||||++.|.......++.+|++++|+|++++..+.. ...++. +.... ...|+++
T Consensus 68 rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~-~~~~~--~~~~iiv 144 (425)
T PRK12317 68 RGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVF-LARTL--GINQLIV 144 (425)
T ss_pred cCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHH-HHHHc--CCCeEEE
Confidence 4456677777777789999999999999887655556789999999999986312211 222222 22221 2247999
Q ss_pred EEecCCCCCCCC--HH----HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMS--PV----EISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~--~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.+... .. ++...+.........++++.+||++|+
T Consensus 145 viNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~ 191 (425)
T PRK12317 145 AINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGD 191 (425)
T ss_pred EEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCC
Confidence 999999975211 11 122221111111224689999999874
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.52 E-value=3.4e-13 Score=95.41 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=65.1
Q ss_pred EEEEECCEEEEEEEcCCCcc--------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 16 EEVIWKNIHFIMWDLGGQQS--------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 16 ~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
..+.+++..+.+|||||.+. +...+..+++.||++++|+|+++..++... .+...++. .++|+++|+
T Consensus 79 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~---~~~piilV~ 153 (472)
T PRK03003 79 YDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDE--AVARVLRR---SGKPVILAA 153 (472)
T ss_pred EEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCCEEEEE
Confidence 44455788899999999763 444566788999999999999987554322 23333333 478999999
Q ss_pred ecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 88 NKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 88 nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
||+|+.... .+....... ..+ ..+++||++|.
T Consensus 154 NK~Dl~~~~--~~~~~~~~~----g~~-~~~~iSA~~g~ 185 (472)
T PRK03003 154 NKVDDERGE--ADAAALWSL----GLG-EPHPVSALHGR 185 (472)
T ss_pred ECccCCccc--hhhHHHHhc----CCC-CeEEEEcCCCC
Confidence 999986431 111111111 111 24689999874
No 170
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.52 E-value=6.1e-14 Score=101.12 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=74.4
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEE
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYA 87 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~ 87 (126)
.|+++....+.+++..+.+||+||++.|.......+.++|++++|+|+++.. .....+.+. .++. .++| +++++
T Consensus 36 iTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~-~~qT~ehl~-il~~---lgi~~iIVVl 110 (581)
T TIGR00475 36 MTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGV-MTQTGEHLA-VLDL---LGIPHTIVVI 110 (581)
T ss_pred ceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEE
Confidence 3555666677777899999999999999988888899999999999998731 112222222 2222 3566 99999
Q ss_pred ecCCCCCCCCHHHHHhhcCc---CcccCCceEEEEeeeeeCC
Q psy6566 88 NKQDIKNSMSPVEISNLLDL---TSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 88 nK~D~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~Sa~~~~ 126 (126)
||+|+.+....+.+...... ......+.+++++||++|+
T Consensus 111 NK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 111 TKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999753211111111110 0001125689999999874
No 171
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.52 E-value=1.1e-14 Score=87.61 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=56.7
Q ss_pred EEEEcCCCc-----chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHH
Q psy6566 26 IMWDLGGQQ-----SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPV 99 (126)
Q Consensus 26 ~i~Dt~G~~-----~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~ 99 (126)
.+|||||+. .++.+.. .++++|++++|+|++++.++... .| .... ..|+++++||+|+.+. ...+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHH
Confidence 689999982 3444444 47899999999999998877542 22 2221 2399999999998642 2222
Q ss_pred HHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 100 EISNLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 100 ~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
+..... +..+ .+++++||++|.
T Consensus 109 ~~~~~~-----~~~~~~~~~~~Sa~~~~ 131 (142)
T TIGR02528 109 RAKELL-----ETAGAEPIFEISSVDEQ 131 (142)
T ss_pred HHHHHH-----HHcCCCcEEEEecCCCC
Confidence 222111 1122 268999999874
No 172
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.52 E-value=1.4e-13 Score=99.37 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=78.4
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
|+......+.+++.++.+|||||+..|...+..+++.+|++++|+|+.+. .......++..+.. .++|+++++||
T Consensus 51 TI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNK 125 (594)
T TIGR01394 51 TILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINK 125 (594)
T ss_pred cEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEEC
Confidence 34444455666999999999999999999999999999999999998763 34455666666654 36889999999
Q ss_pred CCCCCCCCHHHH----HhhcCcCcc--cCCceEEEEeeeeeC
Q psy6566 90 QDIKNSMSPVEI----SNLLDLTSI--KKQQWHIQSCCALTG 125 (126)
Q Consensus 90 ~D~~~~~~~~~v----~~~~~~~~~--~~~~~~~~~~Sa~~~ 125 (126)
+|+.+.. ..++ ...+...-. ....++++.+||++|
T Consensus 126 iD~~~a~-~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g 166 (594)
T TIGR01394 126 IDRPSAR-PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAG 166 (594)
T ss_pred CCCCCcC-HHHHHHHHHHHHHhhccccccccCcEEechhhcC
Confidence 9986532 2222 222211001 233578999999987
No 173
>PRK10218 GTP-binding protein; Provisional
Probab=99.52 E-value=2.9e-13 Score=97.72 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=77.8
Q ss_pred CCccCceE----EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 8 SPTIGSNV----EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 8 ~pTi~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
+++.|+.. ..+..++..+.+|||||+..|...+..+++.+|++++|+|+++.. ......++..... .++|.
T Consensus 49 E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~ 123 (607)
T PRK10218 49 EKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKP 123 (607)
T ss_pred cccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCE
Confidence 44556443 233448899999999999999999999999999999999998643 2233444554433 36788
Q ss_pred EEEEecCCCCCCCCHH---HHHhhcCc-Ccc-cCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPV---EISNLLDL-TSI-KKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~---~v~~~~~~-~~~-~~~~~~~~~~Sa~~~~ 126 (126)
++++||+|+.+..... ++...+.. ... ....++++.+||++|.
T Consensus 124 IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~ 171 (607)
T PRK10218 124 IVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGI 171 (607)
T ss_pred EEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCc
Confidence 9999999987643222 22222211 111 2345789999999873
No 174
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.52 E-value=4.4e-13 Score=93.91 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=69.9
Q ss_pred CceEEEEEECCEEEEEEEcCCCcchHHH--------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQSLRAA--------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
.+....+.+++..+.+|||||++.+... ...+++.+|++++|+|++++.+++.. |+.... . .+.|+
T Consensus 240 d~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~-~---~~~pi 313 (442)
T TIGR00450 240 DVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN-K---SKKPF 313 (442)
T ss_pred EEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh-h---CCCCE
Confidence 3555677779999999999998665432 23568899999999999988777654 554442 2 46899
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
++|+||+|+... ....+ .+..+.+++++||+++
T Consensus 314 IlV~NK~Dl~~~-~~~~~--------~~~~~~~~~~vSak~~ 346 (442)
T TIGR00450 314 ILVLNKIDLKIN-SLEFF--------VSSKVLNSSNLSAKQL 346 (442)
T ss_pred EEEEECccCCCc-chhhh--------hhhcCCceEEEEEecC
Confidence 999999998653 11111 1122346889999973
No 175
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.51 E-value=4.5e-14 Score=82.47 Aligned_cols=69 Identities=23% Similarity=0.442 Sum_probs=55.6
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHH---HHHHhCCCCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE---LYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~piilv~nK~D 91 (126)
+...+.+||++|++.+...+...++.++++++|+|++++.+++.+..+ +..+... ..++|+++++||.|
T Consensus 48 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 48 DRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred CceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 445699999999999988877789999999999999999999987554 4444322 15699999999998
No 176
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.51 E-value=6.4e-13 Score=80.64 Aligned_cols=97 Identities=16% Similarity=0.084 Sum_probs=68.4
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL 84 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 84 (126)
+....+..++..+.+|||+|...+.. .....+..++++++|+|++++.+......+.. ..+.|++
T Consensus 39 ~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi 111 (157)
T cd04164 39 VIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPII 111 (157)
T ss_pred eEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEE
Confidence 44455666888999999999755432 12245778999999999998777666543322 2578999
Q ss_pred EEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++||+|+...... .......+++++||+++.
T Consensus 112 ~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 112 VVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGE 143 (157)
T ss_pred EEEEchhcCCcccc----------ccccCCCceEEEECCCCC
Confidence 99999998764221 122335579999999873
No 177
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.51 E-value=7.6e-13 Score=80.36 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=67.6
Q ss_pred CceEEEEEECCEEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
..........+..+.+|||||...+.. .+...++.+|++++|+|..+..+.... .+...++. .+.|+
T Consensus 34 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~pi 108 (157)
T cd01894 34 DRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---SKKPV 108 (157)
T ss_pred CceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCE
Confidence 345556666888999999999887543 344567889999999998765433332 23333333 35899
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
++++||+|+.+.... ..... ..+. +++++||++|.
T Consensus 109 iiv~nK~D~~~~~~~---~~~~~-----~~~~~~~~~~Sa~~~~ 144 (157)
T cd01894 109 ILVVNKVDNIKEEDE---AAEFY-----SLGFGEPIPISAEHGR 144 (157)
T ss_pred EEEEECcccCChHHH---HHHHH-----hcCCCCeEEEecccCC
Confidence 999999999764211 11111 1122 57899999874
No 178
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.50 E-value=6.1e-13 Score=98.22 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=73.9
Q ss_pred cCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 11 i~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
..+....+.+++..+.||||||++.|..++...++.+|++++|+|+++... ......+... .. .++|+++++||+
T Consensus 325 ~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-~qT~e~i~~a-~~---~~vPiIVviNKi 399 (787)
T PRK05306 325 QHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-PQTIEAINHA-KA---AGVPIIVAINKI 399 (787)
T ss_pred eeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-HhHHHHHHHH-Hh---cCCcEEEEEECc
Confidence 334445566678899999999999999999999999999999999886321 1122223222 22 468999999999
Q ss_pred CCCCCCCHHHHHhhcCc-C-ccc--CCceEEEEeeeeeCC
Q psy6566 91 DIKNSMSPVEISNLLDL-T-SIK--KQQWHIQSCCALTGE 126 (126)
Q Consensus 91 D~~~~~~~~~v~~~~~~-~-~~~--~~~~~~~~~Sa~~~~ 126 (126)
|+.+. ..+.+...+.. . ... ...++++++||++|.
T Consensus 400 Dl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 400 DKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred ccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 99653 22333222111 1 111 124789999999884
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.49 E-value=8.5e-13 Score=95.16 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=73.1
Q ss_pred ccCceEEEEEECC-EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 10 TIGSNVEEVIWKN-IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 10 Ti~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
|..+....+.+++ ..+.+|||||++.|..++...+..+|++++|+|+++... ......+... .. .++|+++++|
T Consensus 121 T~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-~qT~e~i~~~-~~---~~vPiIVviN 195 (587)
T TIGR00487 121 TQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-PQTIEAISHA-KA---ANVPIIVAIN 195 (587)
T ss_pred eecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-HhHHHHHHHH-HH---cCCCEEEEEE
Confidence 4445555666643 489999999999999999989999999999999876321 2222223222 12 4689999999
Q ss_pred cCCCCCCCCHHHHHhhcCcC-cc-c--CCceEEEEeeeeeCC
Q psy6566 89 KQDIKNSMSPVEISNLLDLT-SI-K--KQQWHIQSCCALTGE 126 (126)
Q Consensus 89 K~D~~~~~~~~~v~~~~~~~-~~-~--~~~~~~~~~Sa~~~~ 126 (126)
|+|+.+. ..+.+...+... .. . ....+++++||++|+
T Consensus 196 KiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 196 KIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred CcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999653 223333322111 00 0 123579999999984
No 180
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.49 E-value=8.6e-13 Score=95.49 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=67.4
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI 101 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v 101 (126)
+..+.+|||||++.|...+..+++.+|++++|+|+++.........|. .... .++|+++++||+|+.... ...+
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~~----~~lpiIvViNKiDl~~a~-~~~v 146 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALE----NDLEIIPVLNKIDLPAAD-PERV 146 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCccc-HHHH
Confidence 688999999999999999999999999999999998765444443332 2222 368999999999986532 1222
Q ss_pred HhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 102 SNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...+... .......++.+||++|.
T Consensus 147 ~~ei~~~-lg~~~~~vi~iSAktG~ 170 (600)
T PRK05433 147 KQEIEDV-IGIDASDAVLVSAKTGI 170 (600)
T ss_pred HHHHHHH-hCCCcceEEEEecCCCC
Confidence 1111100 01111248999999874
No 181
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=1.5e-12 Score=80.14 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=68.8
Q ss_pred ceEEEEEECCEEEEEEEcCCCcch----------HH-HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQQSL----------RA-AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~~~~----------~~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.....+..++..+.+|||+|.... .. .....++.+|++++|+|..++.+.... .++.... . .+.
T Consensus 40 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~-~---~~~ 114 (174)
T cd01895 40 SIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLIL-E---EGK 114 (174)
T ss_pred ceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHH-h---cCC
Confidence 334556667888999999996433 11 122356789999999999887665443 2233322 2 358
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...+.+..............+++++||++|+
T Consensus 115 ~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (174)
T cd01895 115 ALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQ 161 (174)
T ss_pred CEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCC
Confidence 99999999998764 2223333333222222224579999999874
No 182
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=4.2e-13 Score=94.62 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=72.1
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcc----hH---HHHHhhccCCcEEEEEEECCCc----ccHHHHHH---HHHHHh
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQS----LR---AAWSTYYTNTEFVILVIDSTDR----ERISLTKE---ELYKML 73 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~----~~---~~~~~~~~~~~~~l~v~d~~~~----~~~~~~~~---~~~~~~ 73 (126)
-+|+..+...+.+++..+.+|||||... .. .....+++.++++++|+|+++. +.+.+... .+..+.
T Consensus 191 fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~ 270 (500)
T PRK12296 191 FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA 270 (500)
T ss_pred cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence 4677777777888889999999999632 11 1223357789999999999753 34444333 333332
Q ss_pred CC-------CCCCCCeEEEEEecCCCCCCCCHH-HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 74 NH-------EDLSKAAVLIYANKQDIKNSMSPV-EISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 74 ~~-------~~~~~~piilv~nK~D~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.. ....+.|.++++||+|+....... .+...+ ...+++++++||++++
T Consensus 271 ~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g~~Vf~ISA~tge 326 (500)
T PRK12296 271 PALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARGWPVFEVSAASRE 326 (500)
T ss_pred hcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcCCeEEEEECCCCC
Confidence 11 023578999999999997532111 111111 2235689999999874
No 183
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.47 E-value=7.9e-13 Score=84.43 Aligned_cols=114 Identities=19% Similarity=0.174 Sum_probs=69.4
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
.|+......+..++..+.+|||||++.|.......++.+|++++|+|+++... ......+. +.+.. ...++++++|
T Consensus 63 ~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~-~~~~~--~~~~iIvviN 138 (208)
T cd04166 63 ITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSY-ILSLL--GIRHVVVAVN 138 (208)
T ss_pred cCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHH-HHHHc--CCCcEEEEEE
Confidence 34444455566688899999999999887777777899999999999986432 11222222 22221 2245788999
Q ss_pred cCCCCCCCC--HHHHHhhcCcC--cccCCceEEEEeeeeeCC
Q psy6566 89 KQDIKNSMS--PVEISNLLDLT--SIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 89 K~D~~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~Sa~~~~ 126 (126)
|+|+.+... ...+....... .......+++.+||++|.
T Consensus 139 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ 180 (208)
T cd04166 139 KMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGD 180 (208)
T ss_pred chhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCC
Confidence 999865211 11111111100 011123568999999873
No 184
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.46 E-value=1.6e-12 Score=86.01 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=65.3
Q ss_pred ccCceEEEEEE-CCEEEEEEEcCCCcchH--------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 10 TIGSNVEEVIW-KNIHFIMWDLGGQQSLR--------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 10 Ti~~~~~~~~~-~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
|+......+.. ++.++.+|||||..... .....+++.+|++++|+|+++..+.. .++...+.. .+
T Consensus 34 TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~---~~ 107 (270)
T TIGR00436 34 TTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN---LK 107 (270)
T ss_pred cccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh---cC
Confidence 33333333333 66789999999974321 12345678999999999999876654 223333333 46
Q ss_pred CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
.|+++++||+|+.+. ..+..... ....... .+++++||++|.
T Consensus 108 ~p~ilV~NK~Dl~~~---~~~~~~~~-~~~~~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 108 RPVVLTRNKLDNKFK---DKLLPLID-KYAILEDFKDIVPISALTGD 150 (270)
T ss_pred CCEEEEEECeeCCCH---HHHHHHHH-HHHhhcCCCceEEEecCCCC
Confidence 899999999998642 21111110 0111111 268999999874
No 185
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.46 E-value=6.1e-13 Score=83.68 Aligned_cols=113 Identities=20% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCccCceEEEEE--ECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 8 SPTIGSNVEEVI--WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 8 ~pTi~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
.-|+......+. ..+..+.++||||+..|.......++.+|++++|+|+.+.... .....+..+.. .++|+++
T Consensus 53 ~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~iv 127 (188)
T PF00009_consen 53 GITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIV 127 (188)
T ss_dssp TSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEE
T ss_pred ccccccccccccccccccceeecccccccceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEE
Confidence 345666677777 7899999999999999998888889999999999999865332 23334444432 4688999
Q ss_pred EEecCCCCCCCCHHHHHh----hcCcCcc-cC-CceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISN----LLDLTSI-KK-QQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~----~~~~~~~-~~-~~~~~~~~Sa~~~~ 126 (126)
+.||+|+... ...++.. .+..... .. ..++++.+||++|.
T Consensus 128 vlNK~D~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~ 173 (188)
T PF00009_consen 128 VLNKMDLIEK-ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGD 173 (188)
T ss_dssp EEETCTSSHH-HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTB
T ss_pred eeeeccchhh-hHHHHHHHHHHHhccccccCccccceEEEEecCCCC
Confidence 9999999731 1122211 1111111 11 35899999999874
No 186
>KOG4423|consensus
Probab=99.46 E-value=7e-16 Score=94.54 Aligned_cols=115 Identities=20% Similarity=0.328 Sum_probs=85.8
Q ss_pred ccCCccCceE--EEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC--
Q psy6566 6 HTSPTIGSNV--EEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL-- 78 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~-- 78 (126)
+|..|||+.+ +..++ .-+++++||.+||++|..+-..|++.+++..+|||+++.-.|+....|...+.....+
T Consensus 53 ~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpn 132 (229)
T KOG4423|consen 53 HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPN 132 (229)
T ss_pred HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCC
Confidence 5778888444 55555 3357899999999999999999999999999999999999999999988777654333
Q ss_pred -CCCeEEEEEecCCCCCCCC---HHHHHhhcCcCcccCCce-EEEEeeeeeC
Q psy6566 79 -SKAAVLIYANKQDIKNSMS---PVEISNLLDLTSIKKQQW-HIQSCCALTG 125 (126)
Q Consensus 79 -~~~piilv~nK~D~~~~~~---~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 125 (126)
.-+|+++..||||...... .+.+... .+.+++ .++++|||.+
T Consensus 133 g~Pv~~vllankCd~e~~a~~~~~~~~d~f-----~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 133 GTPVPCVLLANKCDQEKSAKNEATRQFDNF-----KKENGFEGWTETSAKEN 179 (229)
T ss_pred CCcchheeccchhccChHhhhhhHHHHHHH-----HhccCccceeeeccccc
Confidence 3478999999999865311 1222222 223333 5899999865
No 187
>PRK04213 GTP-binding protein; Provisional
Probab=99.46 E-value=1.5e-13 Score=87.12 Aligned_cols=113 Identities=23% Similarity=0.302 Sum_probs=64.3
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCC-----------CcchHHHHHhhcc----CCcEEEEEEECCCcccHH--------
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGG-----------QQSLRAAWSTYYT----NTEFVILVIDSTDRERIS-------- 63 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~~----~~~~~l~v~d~~~~~~~~-------- 63 (126)
+.|++......+.++ .+.+||||| ++.++..+..+++ .++++++|+|.+....+.
T Consensus 38 ~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~ 115 (201)
T PRK04213 38 KRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGE 115 (201)
T ss_pred CCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCC
Confidence 345444433444444 689999999 5777777766654 457888898875432110
Q ss_pred --HHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcc-cCCceEEEEeeeeeC
Q psy6566 64 --LTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSI-KKQQWHIQSCCALTG 125 (126)
Q Consensus 64 --~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~ 125 (126)
.... +...+.. .++|+++++||+|+.+.. ...++...++.... ...+.+++++||++|
T Consensus 116 ~~~~~~-l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 178 (201)
T PRK04213 116 IPIDVE-MFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG 178 (201)
T ss_pred cHHHHH-HHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC
Confidence 0111 1222222 468999999999986532 11233333332100 111236899999986
No 188
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=2.3e-12 Score=89.66 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=70.5
Q ss_pred CccCceEEEEEEC-CEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCC-C
Q psy6566 9 PTIGSNVEEVIWK-NIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNH-E 76 (126)
Q Consensus 9 pTi~~~~~~~~~~-~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~-~ 76 (126)
+|...+...+.+. +..+.+||+||... ....+..+++.++++++|+|+++. +++++...|..++... .
T Consensus 191 TTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~ 270 (424)
T PRK12297 191 TTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP 270 (424)
T ss_pred ceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch
Confidence 4555555556665 78999999999632 122333446779999999999754 5666665555544332 2
Q ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...+.|.++++||+|+... ...+.... +..+.+++.+||++++
T Consensus 271 ~L~~kP~IVV~NK~DL~~~--~e~l~~l~-----~~l~~~i~~iSA~tge 313 (424)
T PRK12297 271 RLLERPQIVVANKMDLPEA--EENLEEFK-----EKLGPKVFPISALTGQ 313 (424)
T ss_pred hccCCcEEEEEeCCCCcCC--HHHHHHHH-----HHhCCcEEEEeCCCCC
Confidence 2357899999999998542 11121111 1111468999999874
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.45 E-value=2.7e-12 Score=94.24 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=68.2
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
.+..+.+|||||++.|..++..+++.+|++++|+|+++..... ....+..+ .. .++|+++++||+|+... ....
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~Q-T~E~I~~~-k~---~~iPiIVViNKiDl~~~-~~e~ 366 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQ-TIEAINYI-QA---ANVPIIVAINKIDKANA-NTER 366 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChh-hHHHHHHH-Hh---cCceEEEEEECCCcccc-CHHH
Confidence 3589999999999999999999999999999999987632211 11222222 22 46899999999999753 2233
Q ss_pred HHhhcCcC-c-cc--CCceEEEEeeeeeCC
Q psy6566 101 ISNLLDLT-S-IK--KQQWHIQSCCALTGE 126 (126)
Q Consensus 101 v~~~~~~~-~-~~--~~~~~~~~~Sa~~~~ 126 (126)
+...+... . .. ...++++++||++|.
T Consensus 367 v~~eL~~~~ll~e~~g~~vpvv~VSAktG~ 396 (742)
T CHL00189 367 IKQQLAKYNLIPEKWGGDTPMIPISASQGT 396 (742)
T ss_pred HHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence 33322111 0 11 123689999999884
No 190
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.44 E-value=3e-12 Score=77.39 Aligned_cols=110 Identities=18% Similarity=0.111 Sum_probs=72.9
Q ss_pred CceEEEEEEC-CEEEEEEEcCCCcchHH-------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 12 GSNVEEVIWK-NIHFIMWDLGGQQSLRA-------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 12 ~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
.......... ...+.+|||+|...+.. ....+++.+|++++++|..+........ +.... .. .+.|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~-~~---~~~~~ 107 (163)
T cd00880 33 DPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELL-RE---RGKPV 107 (163)
T ss_pred CCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-Hh---cCCeE
Confidence 3444555554 78999999999866543 3445788999999999999876665553 22222 22 57899
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++||+|+.......................+++++||+++.
T Consensus 108 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 108 LLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGE 150 (163)
T ss_pred EEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccC
Confidence 9999999987653333222111222234456789999999863
No 191
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.43 E-value=1.3e-12 Score=81.55 Aligned_cols=112 Identities=22% Similarity=0.156 Sum_probs=65.6
Q ss_pred ccCCccCceE--EEEEECCEEEEEEEcCCCc----------chHHHHHhhcc---CCcEEEEEEECCCcccHHHHHHHHH
Q psy6566 6 HTSPTIGSNV--EEVIWKNIHFIMWDLGGQQ----------SLRAAWSTYYT---NTEFVILVIDSTDRERISLTKEELY 70 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~ 70 (126)
.+.|+.|... ..+..+ ..+.+|||||.. .+..+...+++ .++++++|+|.+++-+.... ..+
T Consensus 46 ~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~- 122 (179)
T TIGR03598 46 RTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EML- 122 (179)
T ss_pred cccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHH-
Confidence 4556666332 222333 379999999952 23334445555 35799999998875443333 222
Q ss_pred HHhCCCCCCCCeEEEEEecCCCCCCCCH----HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 71 KMLNHEDLSKAAVLIYANKQDIKNSMSP----VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 71 ~~~~~~~~~~~piilv~nK~D~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.. .+.|+++++||+|+...... .++...+... ....+++++||++|+
T Consensus 123 ~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 123 EWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---ADDPSVQLFSSLKKT 176 (179)
T ss_pred HHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cCCCceEEEECCCCC
Confidence 23332 46899999999998753211 1222222211 123479999999985
No 192
>PRK11058 GTPase HflX; Provisional
Probab=99.42 E-value=9.1e-12 Score=87.00 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=69.6
Q ss_pred CCccCceEEEEEECC-EEEEEEEcCCCcch--HHHHH------hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 8 SPTIGSNVEEVIWKN-IHFIMWDLGGQQSL--RAAWS------TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~-~~~~i~Dt~G~~~~--~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
-+|++.....+.+.+ ..+.+|||+|..+. ...+. ..++.||++++|+|++++.+++....+ ...+.....
T Consensus 229 ~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v-~~iL~el~~ 307 (426)
T PRK11058 229 FATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAV-NTVLEEIDA 307 (426)
T ss_pred CCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHH-HHHHHHhcc
Confidence 466776667777754 48899999998432 22222 236889999999999998777665432 222222222
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceE-EEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWH-IQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~ 126 (126)
.++|+++++||+|+..... ..+... ..+.+ ++.+||++|+
T Consensus 308 ~~~pvIiV~NKiDL~~~~~-~~~~~~-------~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 308 HEIPTLLVMNKIDMLDDFE-PRIDRD-------EENKPIRVWLSAQTGA 348 (426)
T ss_pred CCCCEEEEEEcccCCCchh-HHHHHH-------hcCCCceEEEeCCCCC
Confidence 4789999999999864311 111111 01222 4789999874
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=5.9e-12 Score=88.37 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=67.3
Q ss_pred cCceEEEEEECCEEEEEEEcCCCcc--------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 11 IGSNVEEVIWKNIHFIMWDLGGQQS--------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 11 i~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.......+.+.+..+.+|||||++. +......+++.+|++++|+|+.+..+..+ .++...++. .+.|
T Consensus 37 ~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~p 111 (435)
T PRK00093 37 RDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPAD--EEIAKILRK---SNKP 111 (435)
T ss_pred ccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCc
Confidence 3355566777889999999999987 33345567889999999999987533322 122233333 3689
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
+++++||+|+.... ....+... .++ .++++||++|.
T Consensus 112 iilv~NK~D~~~~~--~~~~~~~~------lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 112 VILVVNKVDGPDEE--ADAYEFYS------LGLGEPYPISAEHGR 148 (435)
T ss_pred EEEEEECccCccch--hhHHHHHh------cCCCCCEEEEeeCCC
Confidence 99999999975421 12222111 122 37899999874
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.41 E-value=2.9e-12 Score=94.56 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=71.3
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcc----------hHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQS----------LRAA-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
|.+.....+.+++..+.+|||||..+ +..+ ...+++.+|++++|+|+++..+..+.. ++..+..
T Consensus 485 T~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---- 559 (712)
T PRK09518 485 TRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---- 559 (712)
T ss_pred CcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----
Confidence 44444455667888899999999532 2222 234578999999999999887776654 3433322
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+.+......+..............+++.+||++|.
T Consensus 560 ~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~ 607 (712)
T PRK09518 560 AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGW 607 (712)
T ss_pred cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCC
Confidence 468999999999997542222222222111111223467899999874
No 195
>KOG0082|consensus
Probab=99.41 E-value=1.8e-12 Score=87.49 Aligned_cols=88 Identities=24% Similarity=0.465 Sum_probs=80.0
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~ 76 (126)
..||.|+....+.+++..+.+.|+|||...+..|.+++.++++++|++++++ .+...+...+++.+...+
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 4689999999999999999999999999999999999999999999999875 356777788899999999
Q ss_pred CCCCCeEEEEEecCCCCC
Q psy6566 77 DLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~ 94 (126)
+..+.+++++.||.|+-.
T Consensus 259 ~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFE 276 (354)
T ss_pred ccccCcEEEEeecHHHHH
Confidence 999999999999999864
No 196
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=3.3e-12 Score=89.61 Aligned_cols=105 Identities=20% Similarity=0.116 Sum_probs=68.4
Q ss_pred EEEECCEEEEEEEcCCCcchHH----------H-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 17 EVIWKNIHFIMWDLGGQQSLRA----------A-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 17 ~~~~~~~~~~i~Dt~G~~~~~~----------~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
.+..++..+.+|||||...... . ...+++.+|++++|+|+++..+..+.. ++..+.+ .+.|+++
T Consensus 215 ~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~iv 289 (435)
T PRK00093 215 PFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVI 289 (435)
T ss_pred EEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEE
Confidence 3445888899999999643221 1 124678999999999999876655442 3333322 3689999
Q ss_pred EEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.......++...+..........+++++||++|.
T Consensus 290 v~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~ 330 (435)
T PRK00093 290 VVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQ 330 (435)
T ss_pred EEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCC
Confidence 99999987432223333333322223345689999999874
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=9.2e-12 Score=91.95 Aligned_cols=96 Identities=21% Similarity=0.324 Sum_probs=62.2
Q ss_pred EECCEEEEEEEcCCCcc--------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 19 IWKNIHFIMWDLGGQQS--------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 19 ~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
.+++..+.+|||||.+. +......+++.+|++++|+|+++. +......+...++. .+.|+++++||+
T Consensus 319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~ 393 (712)
T PRK09518 319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKI 393 (712)
T ss_pred EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECc
Confidence 34788999999999763 344556678999999999998763 22222234444443 578999999999
Q ss_pred CCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 91 DIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 91 D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+.... .......... .+ ..+++||++|.
T Consensus 394 D~~~~~--~~~~~~~~lg----~~-~~~~iSA~~g~ 422 (712)
T PRK09518 394 DDQASE--YDAAEFWKLG----LG-EPYPISAMHGR 422 (712)
T ss_pred ccccch--hhHHHHHHcC----CC-CeEEEECCCCC
Confidence 986431 1111111111 11 24789999874
No 198
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.39 E-value=1.4e-12 Score=94.25 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=67.2
Q ss_pred CceEEEEEECCEEEEEEEcCCCcchHHH------HHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQSLRAA------WSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
+.....+..++..+.+|||||+..+... .+.++ +.+|++++|+|.++.+ +...+..+..+ .+.|+
T Consensus 30 ~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~----~~~Pi 102 (591)
T TIGR00437 30 EKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLE----LGIPM 102 (591)
T ss_pred EEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHh----cCCCE
Confidence 3444556668888999999999876542 34443 4799999999988643 23333444432 36899
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++||+|+.+......-.+. ..+..+++++++||++|+
T Consensus 103 IIVlNK~Dl~~~~~i~~d~~~----L~~~lg~pvv~tSA~tg~ 141 (591)
T TIGR00437 103 ILALNLVDEAEKKGIRIDEEK----LEERLGVPVVPTSATEGR 141 (591)
T ss_pred EEEEehhHHHHhCCChhhHHH----HHHHcCCCEEEEECCCCC
Confidence 999999998643211110111 112335689999999874
No 199
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.39 E-value=9.7e-12 Score=80.89 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=62.4
Q ss_pred cCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 11 i~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
+......+..++.++.+|||||+..|...+..+++.+|++++|+|.++.... ....++.... . .++|+++++||+
T Consensus 52 i~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~-~---~~~P~iivvNK~ 126 (237)
T cd04168 52 IFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLR-K---LNIPTIIFVNKI 126 (237)
T ss_pred eeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHH-H---cCCCEEEEEECc
Confidence 3344556666999999999999999999999999999999999999875432 3344454442 2 368999999999
Q ss_pred CCCCC
Q psy6566 91 DIKNS 95 (126)
Q Consensus 91 D~~~~ 95 (126)
|+.+.
T Consensus 127 D~~~a 131 (237)
T cd04168 127 DRAGA 131 (237)
T ss_pred cccCC
Confidence 98764
No 200
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.38 E-value=1.3e-11 Score=86.50 Aligned_cols=101 Identities=22% Similarity=0.307 Sum_probs=67.2
Q ss_pred ceEEEEEECCEEEEEEEcCCC--------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQ--------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL 84 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~--------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 84 (126)
.....+.+++..+.+|||||. +.+......+++.+|++++|+|..+..+..+ ..+...++. .+.|++
T Consensus 37 ~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~pii 111 (429)
T TIGR03594 37 RKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVI 111 (429)
T ss_pred ceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEE
Confidence 444566668899999999996 4445566777899999999999886433332 223333333 468999
Q ss_pred EEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
+++||+|+..... ...+.. ..++ +++++||++|.
T Consensus 112 lVvNK~D~~~~~~--~~~~~~------~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 112 LVANKIDGKKEDA--VAAEFY------SLGFGEPIPISAEHGR 146 (429)
T ss_pred EEEECccCCcccc--cHHHHH------hcCCCCeEEEeCCcCC
Confidence 9999999865321 111111 1122 58999999873
No 201
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.38 E-value=5.9e-12 Score=90.84 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=50.3
Q ss_pred EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+.+|||||++.|..++..+++.+|++++|+|+++ +.+++.+. .++. .++|+++++||+|+..
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccc
Confidence 38899999999999999999999999999999986 34443332 1122 4689999999999864
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.37 E-value=3.4e-12 Score=88.88 Aligned_cols=100 Identities=21% Similarity=0.165 Sum_probs=64.7
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCH---
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSP--- 98 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--- 98 (126)
+..+.+|||||++.|...+......+|++++|+|+++........+.+..+ +.. ...|+++++||+|+.+....
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHH
Confidence 468999999999999988888888999999999998632112222223222 221 23478999999999753211
Q ss_pred -HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 99 -VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 99 -~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++...+... ...+++++++||++|+
T Consensus 156 ~~~i~~~l~~~--~~~~~~ii~vSA~~g~ 182 (406)
T TIGR03680 156 YEEIKEFVKGT--VAENAPIIPVSALHNA 182 (406)
T ss_pred HHHHHhhhhhc--ccCCCeEEEEECCCCC
Confidence 1111111110 1235689999999874
No 203
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.36 E-value=7.1e-12 Score=90.97 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=71.5
Q ss_pred CCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEE
Q psy6566 8 SPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLI 85 (126)
Q Consensus 8 ~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iil 85 (126)
.+|+...+..+.. ++..+.+|||||++.|.......+.++|++++|+|+++.- .....+.+. +++. .++| +++
T Consensus 35 GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~-~~qT~ehl~-il~~---lgi~~iIV 109 (614)
T PRK10512 35 GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGV-MAQTREHLA-ILQL---TGNPMLTV 109 (614)
T ss_pred CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCC-cHHHHHHHH-HHHH---cCCCeEEE
Confidence 5666655555545 5677999999999999777777789999999999987631 122222222 2222 2345 679
Q ss_pred EEecCCCCCCCCHHHHHhhcCcCcc--cCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISNLLDLTSI--KKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.+......+......... .-...+++.+||++|+
T Consensus 110 VlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 110 ALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 9999999753222222222111111 1123579999999874
No 204
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.36 E-value=2e-11 Score=80.72 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=59.2
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
.....+..++.++.+|||||+..|.......++.+|++++|+|+++... .....++... +. .++|+++++||+|+
T Consensus 61 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~-~~---~~~P~iivvNK~D~ 135 (267)
T cd04169 61 SSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVC-RL---RGIPIITFINKLDR 135 (267)
T ss_pred EEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHH-Hh---cCCCEEEEEECCcc
Confidence 3344666699999999999999998877778999999999999976432 2223334332 22 46899999999998
Q ss_pred CCCC
Q psy6566 93 KNSM 96 (126)
Q Consensus 93 ~~~~ 96 (126)
.+..
T Consensus 136 ~~a~ 139 (267)
T cd04169 136 EGRD 139 (267)
T ss_pred CCCC
Confidence 7643
No 205
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.36 E-value=1.3e-11 Score=79.51 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=54.3
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
+..+.+|||||++.|......+++.+|++++|+|+++...... ...+..... .++|+++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 7889999999999999999999999999999999987654433 333444432 357999999999976
No 206
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.34 E-value=1.6e-11 Score=77.67 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=67.9
Q ss_pred EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCC
Q psy6566 16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKN 94 (126)
Q Consensus 16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~ 94 (126)
..+..++..+.+.||||...|.......+..+|++++|+|+.+.-. ......+..+ .. .++| ++++.||+|+..
T Consensus 58 ~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 58 VEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVD 132 (195)
T ss_pred eEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCC
Confidence 3344477899999999999888777777899999999999876422 2223333333 22 3455 789999999864
Q ss_pred CCC-HHH----HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 95 SMS-PVE----ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 95 ~~~-~~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
... .+. +...+...-.+...++++.+||++|.
T Consensus 133 ~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~ 169 (195)
T cd01884 133 DEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKAL 169 (195)
T ss_pred cHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCcccc
Confidence 211 111 22221111112235789999999873
No 207
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.33 E-value=2e-11 Score=85.80 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=74.2
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccH-------HHHHHHHHHHhCCCCCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI-------SLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 81 (126)
-|+......+..++..+.+.||||++.|.......+..+|++++|+|+++. .+ ...+.++... +. .++
T Consensus 71 iTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~---~gi 145 (447)
T PLN00043 71 ITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT---LGV 145 (447)
T ss_pred ceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH---cCC
Confidence 355555555666889999999999999999888889999999999998862 22 2333433322 22 356
Q ss_pred -eEEEEEecCCCCC-CCC---HHH----HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 -AVLIYANKQDIKN-SMS---PVE----ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 -piilv~nK~D~~~-~~~---~~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++++||+|+.. ... .++ +...+...-.....++++++||++|+
T Consensus 146 ~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ 199 (447)
T PLN00043 146 KQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGD 199 (447)
T ss_pred CcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccc
Confidence 5788999999862 111 122 22222111112235789999999874
No 208
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.33 E-value=1.2e-11 Score=85.81 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=67.4
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEE
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYA 87 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~ 87 (126)
.|+......+..++..+.+|||||++.|..........+|++++|+|+.+... ....+++..+. . .++|. ++++
T Consensus 61 ~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~-~---~gi~~iIvvv 135 (394)
T TIGR00485 61 ITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLAR-Q---VGVPYIVVFL 135 (394)
T ss_pred cceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCEEEEEE
Confidence 34443333333367889999999999987766666778999999999886322 22233333332 2 24664 4689
Q ss_pred ecCCCCCCCC-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 88 NKQDIKNSMS-PV----EISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 88 nK~D~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
||+|+.+... .+ ++...+.........++++.+||++|
T Consensus 136 NK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 136 NKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred EecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccc
Confidence 9999875311 11 12222111111112378999999876
No 209
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.32 E-value=6e-12 Score=87.21 Aligned_cols=87 Identities=21% Similarity=0.378 Sum_probs=74.8
Q ss_pred cCCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCC
Q psy6566 7 TSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNH 75 (126)
Q Consensus 7 ~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~ 75 (126)
..+|.|+....+.+ ++..+.++|+|||...+..|.+++.++++++||+++++ .+.+.+....+..+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 45889999999999 99999999999999999999999999999999999763 35688888899999998
Q ss_pred CCCCCCeEEEEEecCCCC
Q psy6566 76 EDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~ 93 (126)
+...+.|++|++||.|+-
T Consensus 299 ~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGGTTSEEEEEEE-HHHH
T ss_pred cccccCceEEeeecHHHH
Confidence 888899999999999953
No 210
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.31 E-value=4.9e-11 Score=78.93 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=61.5
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
|+......+.+++.++.+|||||...|...+...++.+|++++|+|+.+...- .....+... .. .++|+++++||
T Consensus 51 ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~-~~---~~~p~ivviNK 125 (270)
T cd01886 51 TIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQA-DR---YNVPRIAFVNK 125 (270)
T ss_pred CeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCEEEEEEC
Confidence 44455566777999999999999999999899999999999999998764322 223334333 22 46899999999
Q ss_pred CCCCCC
Q psy6566 90 QDIKNS 95 (126)
Q Consensus 90 ~D~~~~ 95 (126)
+|+.+.
T Consensus 126 ~D~~~a 131 (270)
T cd01886 126 MDRTGA 131 (270)
T ss_pred CCCCCC
Confidence 998753
No 211
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.30 E-value=1e-11 Score=76.19 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=55.9
Q ss_pred EEEcCCCc-----chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566 27 MWDLGGQQ-----SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI 101 (126)
Q Consensus 27 i~Dt~G~~-----~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v 101 (126)
+|||||.. .++.+. ..++++|++++|+|+++..++.. .++..+ . .+.|+++++||+|+.+. ..+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~~--~~~~~~--~---~~~~ii~v~nK~Dl~~~-~~~~~ 111 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRLP--AGLLDI--G---VSKRQIAVISKTDMPDA-DVAAT 111 (158)
T ss_pred cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCcccccC--HHHHhc--c---CCCCeEEEEEccccCcc-cHHHH
Confidence 69999972 222222 34789999999999998765532 233332 1 35789999999998653 23333
Q ss_pred HhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 102 SNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+..... ....+++++||++|+
T Consensus 112 ~~~~~~~---~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 112 RKLLLET---GFEEPIFELNSHDPQ 133 (158)
T ss_pred HHHHHHc---CCCCCEEEEECCCcc
Confidence 3221111 112489999999874
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.30 E-value=2.2e-11 Score=84.94 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=61.0
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHH---
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPV--- 99 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~--- 99 (126)
..+.+|||||++.|..........+|++++|+|++++.........+..+ +.. ...|+++++||+|+.+.....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 67999999999988776555566789999999998642111122222222 221 224789999999997632211
Q ss_pred -HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 100 -EISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 100 -~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++...+... .....+++++||++|+
T Consensus 162 ~~i~~~l~~~--~~~~~~ii~vSA~~g~ 187 (411)
T PRK04000 162 EQIKEFVKGT--VAENAPIIPVSALHKV 187 (411)
T ss_pred HHHHHHhccc--cCCCCeEEEEECCCCc
Confidence 122111110 1235689999999874
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.30 E-value=3.7e-11 Score=86.88 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=49.4
Q ss_pred EEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 25 FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
+.+|||||++.|..++...++.+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCc
Confidence 7899999999999999888899999999999986 44444332 1222 468999999999985
No 214
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.29 E-value=2.9e-12 Score=79.65 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=55.4
Q ss_pred CCEEEEEEEcCCCcchHHHHHh---hccCCcEEEEEEECCC-cccHHHHHHHHHHHhCCCC--CCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWST---YYTNTEFVILVIDSTD-RERISLTKEELYKMLNHED--LSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~---~~~~~~~~l~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~ 94 (126)
.+..+.+.|+||+++.+..... +...+.++|||+|++. +..+.++.+++..++.... ...+|+++++||+|+..
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 5567999999999998874433 4788999999999874 4456666666766655422 35789999999999987
Q ss_pred CCCHHHH
Q psy6566 95 SMSPVEI 101 (126)
Q Consensus 95 ~~~~~~v 101 (126)
+.....+
T Consensus 127 A~~~~~I 133 (181)
T PF09439_consen 127 AKPPKKI 133 (181)
T ss_dssp ---HHHH
T ss_pred cCCHHHH
Confidence 6554443
No 215
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.29 E-value=6.8e-12 Score=81.95 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=62.5
Q ss_pred cchHHHHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccC
Q psy6566 34 QSLRAAWSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK 112 (126)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~ 112 (126)
+++..+.+.+++++|++++|+|++++. ++..+.+|+..+ +. .++|+++++||+||.... ++.......+ ..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~---~~~~~~~~~~-~~ 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDE---DMEKEQLDIY-RN 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCH---HHHHHHHHHH-HH
Confidence 677777888999999999999999887 898888877654 32 578999999999996532 2211111112 23
Q ss_pred CceEEEEeeeeeCC
Q psy6566 113 QQWHIQSCCALTGE 126 (126)
Q Consensus 113 ~~~~~~~~Sa~~~~ 126 (126)
.+++++++||++|+
T Consensus 96 ~g~~v~~~SAktg~ 109 (245)
T TIGR00157 96 IGYQVLMTSSKNQD 109 (245)
T ss_pred CCCeEEEEecCCch
Confidence 56789999999874
No 216
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.27 E-value=7.5e-11 Score=81.64 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=72.2
Q ss_pred CCccCceEEEEEEC-CEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC---CcccHHHHHHHHHHHhCC-
Q psy6566 8 SPTIGSNVEEVIWK-NIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST---DRERISLTKEELYKMLNH- 75 (126)
Q Consensus 8 ~pTi~~~~~~~~~~-~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~---~~~~~~~~~~~~~~~~~~- 75 (126)
.+|.......+.+. ...+.++||||... .......+++.++++++|+|++ +.+.+++...+..++...
T Consensus 191 ~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~ 270 (390)
T PRK12298 191 FTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS 270 (390)
T ss_pred CCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence 35666666666675 45799999999743 1122233578999999999988 445666666665555432
Q ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 76 EDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
....+.|+++++||+|+.......+....+... .....+++.+||++++
T Consensus 271 ~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg~ 319 (390)
T PRK12298 271 PKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASGL 319 (390)
T ss_pred hhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCCc
Confidence 223468999999999986532211111111100 0111358999999873
No 217
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.27 E-value=4.5e-11 Score=75.37 Aligned_cols=115 Identities=19% Similarity=0.135 Sum_probs=65.8
Q ss_pred ccCCccCceEEEEEE-CCEEEEEEEcCCC----------cchHHHHHhhccCC---cEEEEEEECCCcccHHHHHHHHHH
Q psy6566 6 HTSPTIGSNVEEVIW-KNIHFIMWDLGGQ----------QSLRAAWSTYYTNT---EFVILVIDSTDRERISLTKEELYK 71 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~----------~~~~~~~~~~~~~~---~~~l~v~d~~~~~~~~~~~~~~~~ 71 (126)
.+.||.|.....-.. .+..+.+|||||. +.+......+++.+ +++++++|...+..... .++..
T Consensus 52 ~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~ 129 (196)
T PRK00454 52 RTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIE 129 (196)
T ss_pred cccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHH
Confidence 556676643321111 2578999999994 34445555566544 67888899776543322 12222
Q ss_pred HhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 72 MLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 72 ~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.. .+.|+++++||+|+........+..... .........++++||++|+
T Consensus 130 ~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~~~~~~Sa~~~~ 180 (196)
T PRK00454 130 WLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDDEVILFSSLKKQ 180 (196)
T ss_pred HHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCCceEEEEcCCCC
Confidence 3332 4689999999999865321122221111 1111224578999999874
No 218
>KOG0090|consensus
Probab=99.27 E-value=1.1e-10 Score=73.53 Aligned_cols=93 Identities=26% Similarity=0.329 Sum_probs=72.3
Q ss_pred cccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhcc---CCcEEEEEEECCC-cccHHHHHHHHHHHhCCC--CC
Q psy6566 5 VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYT---NTEFVILVIDSTD-RERISLTKEELYKMLNHE--DL 78 (126)
Q Consensus 5 ~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---~~~~~l~v~d~~~-~~~~~~~~~~~~~~~~~~--~~ 78 (126)
..+.|.+..+...+.++.....+.|.||+.+.+.....++. .+-+++||+|+.. +....+..+++..++... ..
T Consensus 64 ~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~ 143 (238)
T KOG0090|consen 64 RGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKK 143 (238)
T ss_pred cCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhcccc
Confidence 35566677788888888888999999999999998888887 7999999999764 344556666666665554 34
Q ss_pred CCCeEEEEEecCCCCCCCC
Q psy6566 79 SKAAVLIYANKQDIKNSMS 97 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~ 97 (126)
+.+|++++|||.|+....+
T Consensus 144 ~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 144 NKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred CCCCEEEEecchhhhhcCc
Confidence 6789999999999876543
No 219
>PRK00089 era GTPase Era; Reviewed
Probab=99.26 E-value=1.2e-10 Score=77.88 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=61.3
Q ss_pred CCEEEEEEEcCCCcchH--------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLR--------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
++..+.+|||||..... ......+..+|++++|+|+++. +.....++...+.. .+.|+++++||+|+
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl 125 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDL 125 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcC
Confidence 66899999999974432 2334457899999999999873 22222334344333 46899999999999
Q ss_pred CCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 93 KNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 93 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
... .........+.. ......++.+||++|.
T Consensus 126 ~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 126 VKDKEELLPLLEELSE---LMDFAEIVPISALKGD 157 (292)
T ss_pred CCCHHHHHHHHHHHHh---hCCCCeEEEecCCCCC
Confidence 732 111222222211 1123468999999873
No 220
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.25 E-value=1.2e-10 Score=70.98 Aligned_cols=98 Identities=21% Similarity=0.269 Sum_probs=61.4
Q ss_pred CCEEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
.+..+.+|||+|...... .....+..++++++++|++++. .....++...+.. .+.|+++++||+|+
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl 123 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDL 123 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhc
Confidence 668899999999765432 3344578899999999998762 2222233333332 25799999999998
Q ss_pred CC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 93 KN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 93 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.. .....+...... ......+++++|++++.
T Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 124 VKDKEDLLPLLEKLK---ELGPFAEIFPISALKGE 155 (168)
T ss_pred cccHHHHHHHHHHHH---hccCCCceEEEEeccCC
Confidence 74 211122222221 11223578999998763
No 221
>PRK13351 elongation factor G; Reviewed
Probab=99.25 E-value=1.2e-10 Score=86.01 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=68.4
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
+.+|++.....+.+++..+.+|||||+..|...+..+++.+|++++|+|.++....... ..|..+ .. .++|++++
T Consensus 57 r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~-~~---~~~p~iiv 131 (687)
T PRK13351 57 RGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQA-DR---YGIPRLIF 131 (687)
T ss_pred cCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHH-Hh---cCCCEEEE
Confidence 56788877778888999999999999999999999999999999999999876555433 334433 22 36899999
Q ss_pred EecCCCCCC
Q psy6566 87 ANKQDIKNS 95 (126)
Q Consensus 87 ~nK~D~~~~ 95 (126)
+||+|+...
T Consensus 132 iNK~D~~~~ 140 (687)
T PRK13351 132 INKMDRVGA 140 (687)
T ss_pred EECCCCCCC
Confidence 999998864
No 222
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.24 E-value=1.7e-10 Score=87.43 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=48.8
Q ss_pred EEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 25 FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+.||||||++.|..+....+..+|++++|+|+++ +.+++.+. . ++. .++|+++++||+|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~-lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----I-LRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----H-HHH---cCCCEEEEEECCCCcc
Confidence 8999999999999988888899999999999986 33333332 2 222 3579999999999853
No 223
>KOG0462|consensus
Probab=99.24 E-value=1e-10 Score=82.31 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=71.8
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
+...+.++||||+-.|.....+.+.-|+|+++|+|+++--..+-...++..+ + .+..+|.|.||+|++.+. .+.
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~ad-pe~ 196 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSAD-PER 196 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCC-HHH
Confidence 3488999999999999999999999999999999998754444444434333 3 468889999999998853 344
Q ss_pred HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 101 ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 101 v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.......+. ...-+++.+|||+|.
T Consensus 197 V~~q~~~lF~-~~~~~~i~vSAK~G~ 221 (650)
T KOG0462|consen 197 VENQLFELFD-IPPAEVIYVSAKTGL 221 (650)
T ss_pred HHHHHHHHhc-CCccceEEEEeccCc
Confidence 4433332222 122378999999983
No 224
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.23 E-value=3.3e-11 Score=77.87 Aligned_cols=87 Identities=17% Similarity=0.310 Sum_probs=57.1
Q ss_pred ccCCccCceEEEEEE-CCEEEEEEEcCCCcchHH-----HHHhhccCCcEEEEEEECCCcccHHHHH---HHHHHHhCCC
Q psy6566 6 HTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRA-----AWSTYYTNTEFVILVIDSTDRERISLTK---EELYKMLNHE 76 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~~~~l~v~d~~~~~~~~~~~---~~~~~~~~~~ 76 (126)
...||+.+....+.+ ..+.+++||+|||..+-. ..+..++++.++|||+|+.+.+-.+++. ..+..+.+.+
T Consensus 30 ~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s 109 (232)
T PF04670_consen 30 RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS 109 (232)
T ss_dssp G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS
T ss_pred ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC
Confidence 456899999888887 778999999999976543 3677799999999999998544333332 2233333322
Q ss_pred CCCCCeEEEEEecCCCCC
Q psy6566 77 DLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~ 94 (126)
+++.+-++.+|+|+..
T Consensus 110 --p~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 110 --PNIKVFVFIHKMDLLS 125 (232)
T ss_dssp --TT-EEEEEEE-CCCS-
T ss_pred --CCCeEEEEEeecccCC
Confidence 7899999999999865
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.23 E-value=1.6e-10 Score=74.66 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=51.9
Q ss_pred EEEECCEEEEEEEcCCCcchHHHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 17 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..++..+.+.||||++.|.......+. .+|++++|+|+..... .....++..+ .. .++|++++.||+|+.+
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAP 152 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccC
Confidence 34447789999999999998765544453 6899999999876432 2223333333 22 4689999999999865
Q ss_pred C
Q psy6566 95 S 95 (126)
Q Consensus 95 ~ 95 (126)
.
T Consensus 153 ~ 153 (224)
T cd04165 153 A 153 (224)
T ss_pred H
Confidence 3
No 226
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.23 E-value=9.2e-11 Score=83.10 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=69.1
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
-|+......+..++.++.++||||++.|.......++.+|++++|+|+.+...- .....+. +.... ...|+++++|
T Consensus 93 iTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~~-l~~~l--g~~~iIvvvN 168 (474)
T PRK05124 93 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRRHSF-IATLL--GIKHLVVAVN 168 (474)
T ss_pred CCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchHHHH-HHHHh--CCCceEEEEE
Confidence 345555555666888999999999999876555557999999999998753211 1111111 11111 2247899999
Q ss_pred cCCCCCCCC--HHHHHhhcCc---CcccCCceEEEEeeeeeCC
Q psy6566 89 KQDIKNSMS--PVEISNLLDL---TSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 89 K~D~~~~~~--~~~v~~~~~~---~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+|+.+... ..++...+.. ........+++.+||++|+
T Consensus 169 KiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ 211 (474)
T PRK05124 169 KMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGD 211 (474)
T ss_pred eeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCC
Confidence 999874211 1222222211 0000124689999999874
No 227
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.23 E-value=1.9e-10 Score=84.90 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=62.6
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
.|+......+.+++.++.+|||||+..+...+...++.+|++++|+|+.+...... ...+..+ .. .++|+++++|
T Consensus 61 iti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviN 135 (689)
T TIGR00484 61 ITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVN 135 (689)
T ss_pred CCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEE
Confidence 34445556677799999999999999998888889999999999999987544332 2334333 22 3689999999
Q ss_pred cCCCCCC
Q psy6566 89 KQDIKNS 95 (126)
Q Consensus 89 K~D~~~~ 95 (126)
|+|+.+.
T Consensus 136 K~D~~~~ 142 (689)
T TIGR00484 136 KMDKTGA 142 (689)
T ss_pred CCCCCCC
Confidence 9999764
No 228
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.4e-10 Score=79.50 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=75.4
Q ss_pred cCceEEEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566 11 IGSNVEEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVL 84 (126)
Q Consensus 11 i~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pii 84 (126)
.++..+.+.+. ...+.|.||||++-|..++..-..-+|.+++|+|+++ |.+.+.+. .. +. .+.|++
T Consensus 40 QhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~----ha-k~---a~vP~i 111 (509)
T COG0532 40 QHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN----HA-KA---AGVPIV 111 (509)
T ss_pred eEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH----HH-HH---CCCCEE
Confidence 33455556653 3689999999999999999888888999999999987 34444332 12 22 579999
Q ss_pred EEEecCCCCCCCCHHHHHhhcCcCcc----cCCceEEEEeeeeeCC
Q psy6566 85 IYANKQDIKNSMSPVEISNLLDLTSI----KKQQWHIQSCCALTGE 126 (126)
Q Consensus 85 lv~nK~D~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~ 126 (126)
+..||+|..+. ++..+...+...-. -.+...++.+||++|+
T Consensus 112 VAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 112 VAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 99999999864 34444333322211 2244789999999985
No 229
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.22 E-value=1.8e-10 Score=73.84 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=53.0
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
...+.+|||||++.|......+++.+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 4789999999999998888889999999999999987655432 333333322 348999999999975
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.22 E-value=7.7e-11 Score=82.12 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=70.3
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
-|+......+..++.++.++||||++.|.......+..+|++++|+|+.+... ......+... ... ...+++++.|
T Consensus 66 iTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~-~~~--~~~~iivviN 141 (406)
T TIGR02034 66 ITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIA-SLL--GIRHVVLAVN 141 (406)
T ss_pred cCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHH-HHc--CCCcEEEEEE
Confidence 35555556666688899999999999997766667889999999999875321 1122222222 221 2346889999
Q ss_pred cCCCCCCCC--HHHHHhhcCcC--cccCCceEEEEeeeeeCC
Q psy6566 89 KQDIKNSMS--PVEISNLLDLT--SIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 89 K~D~~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~Sa~~~~ 126 (126)
|+|+..... ..++...+... ......++++.+||++|+
T Consensus 142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ 183 (406)
T TIGR02034 142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGD 183 (406)
T ss_pred ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCC
Confidence 999865211 11122221100 001124679999999874
No 231
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.22 E-value=3.2e-10 Score=73.65 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=40.1
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchH-------HHHHhhccCCcEEEEEEECCCcc
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR-------AAWSTYYTNTEFVILVIDSTDRE 60 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~~l~v~d~~~~~ 60 (126)
+|+......+.+++..+++|||||..... .....+++.++++++|+|++++.
T Consensus 33 tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 33 TTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE 91 (233)
T ss_pred ccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch
Confidence 46666677778899999999999974322 23455789999999999988754
No 232
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.21 E-value=2.3e-10 Score=81.87 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=58.9
Q ss_pred eEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 14 NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 14 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
....+..++..+.+|||||+..|......+++.+|++++|+|+++... .....++... +. .++|+++++||+|+.
T Consensus 70 ~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 70 SVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVC-RL---RDTPIFTFINKLDRD 144 (526)
T ss_pred eeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEECCccc
Confidence 334566689999999999999998877778999999999999986432 2233444333 22 478999999999987
Q ss_pred CC
Q psy6566 94 NS 95 (126)
Q Consensus 94 ~~ 95 (126)
..
T Consensus 145 ~a 146 (526)
T PRK00741 145 GR 146 (526)
T ss_pred cc
Confidence 64
No 233
>PRK12736 elongation factor Tu; Reviewed
Probab=99.21 E-value=1.2e-10 Score=80.86 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=68.0
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEe
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYAN 88 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~n 88 (126)
|+......+..++..+.++||||++.|..........+|++++|+|+.+... .....++..+. . .++| +++++|
T Consensus 62 T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~-~---~g~~~~IvviN 136 (394)
T PRK12736 62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLAR-Q---VGVPYLVVFLN 136 (394)
T ss_pred cEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCEEEEEEE
Confidence 3433333333367789999999999887766666788999999999876322 22333333332 2 3567 678999
Q ss_pred cCCCCCCCCH-H----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 89 KQDIKNSMSP-V----EISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 89 K~D~~~~~~~-~----~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
|+|+.+.... + ++...+..........+++.+||++|
T Consensus 137 K~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 137 KVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKA 178 (394)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecccc
Confidence 9998642211 1 12121111111122468999999986
No 234
>KOG1145|consensus
Probab=99.19 E-value=5.2e-10 Score=78.98 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=75.5
Q ss_pred CceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 12 GSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 12 ~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
++....+.+ .+..+.|.||||+.-|..|+.+-..-+|.+++|+.+.+. .+.+.+ ... + ..+.|+++..
T Consensus 189 hIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaI----khA-k---~A~VpiVvAi 260 (683)
T KOG1145|consen 189 HIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAI----KHA-K---SANVPIVVAI 260 (683)
T ss_pred eeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHH----HHH-H---hcCCCEEEEE
Confidence 344444455 789999999999999999999888899999999987763 333332 222 1 2689999999
Q ss_pred ecCCCCCCCCHHHHHhhcCcCcc----cCCceEEEEeeeeeCC
Q psy6566 88 NKQDIKNSMSPVEISNLLDLTSI----KKQQWHIQSCCALTGE 126 (126)
Q Consensus 88 nK~D~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~ 126 (126)
||+|.++. +++.+...+...-. -....+++.+||++|+
T Consensus 261 nKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 261 NKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred eccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 99998764 44555444332211 2245789999999985
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=99.19 E-value=3.3e-10 Score=78.79 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=64.3
Q ss_pred EEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCCCCCC
Q psy6566 18 VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDIKNSM 96 (126)
Q Consensus 18 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~ 96 (126)
+..++..+.++||||++.|.......+..+|++++|+|+.+.. ......++..+ .. .++|.+ +++||+|+.+..
T Consensus 70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~ 144 (396)
T PRK12735 70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDE 144 (396)
T ss_pred EcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHH-HH---cCCCeEEEEEEecCCcchH
Confidence 3336778999999999988776666788999999999987632 22233334333 22 357755 679999997421
Q ss_pred C-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 97 S-PV----EISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 97 ~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
. .+ ++...+.........++++.+||++|
T Consensus 145 ~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g 178 (396)
T PRK12735 145 ELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA 178 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCceeEEecchhcc
Confidence 1 11 12111111101112478999999987
No 236
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.19 E-value=4.7e-10 Score=77.85 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=72.5
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHH--------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAW--------STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
..+|-++-...+.++++.+.+.||+|.+.-.... ...++.||.+++|+|.+.+.+-.+... +. . ..
T Consensus 249 ~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~-~----~~ 322 (454)
T COG0486 249 AGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE-L----LP 322 (454)
T ss_pred CCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH-h----cc
Confidence 4466667788899999999999999976543322 234789999999999998533222221 11 1 12
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++|.||.|+........+ + ...+.+++.+||++|+
T Consensus 323 ~~~~~i~v~NK~DL~~~~~~~~~-~-------~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 323 KKKPIIVVLNKADLVSKIELESE-K-------LANGDAIISISAKTGE 362 (454)
T ss_pred cCCCEEEEEechhcccccccchh-h-------ccCCCceEEEEecCcc
Confidence 57899999999999875432222 1 1123368999999874
No 237
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.17 E-value=3.5e-10 Score=79.65 Aligned_cols=114 Identities=19% Similarity=0.148 Sum_probs=73.4
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCccc---H---HHHHHHHHHHhCCCCCCCCe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER---I---SLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p 82 (126)
-|+......+..++..+.+.||||++.|.......+..+|++++|+|+++... + ...++.+..+ .. .++|
T Consensus 71 iTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~ 146 (446)
T PTZ00141 71 ITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVK 146 (446)
T ss_pred EeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCC
Confidence 34455555566688999999999999998888778899999999999875320 0 2333334333 22 3555
Q ss_pred -EEEEEecCCCCC----CCCHHHHHhhc----CcCcccCCceEEEEeeeeeCC
Q psy6566 83 -VLIYANKQDIKN----SMSPVEISNLL----DLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 -iilv~nK~D~~~----~~~~~~v~~~~----~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++.||+|... +...+++...+ .....+...++++.+||.+|+
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ 199 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGD 199 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCC
Confidence 779999999532 11222222222 211112335889999999874
No 238
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.17 E-value=2.9e-10 Score=81.40 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=56.3
Q ss_pred EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
..+..++..+.+|||||+..|.......++.+|++++|+|+++.- ......++. ..+. .++|+++++||+|+..
T Consensus 73 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 73 MQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 445558999999999999998887777899999999999987631 222333343 3333 4689999999999865
No 239
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.15 E-value=3.4e-10 Score=84.10 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=67.5
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHH----------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRA----------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
|++.....+..++..+.+|||||...+.. ....++ +.+|++++|+|.++.+. ...++.++.+
T Consensus 37 Tve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e--- 110 (772)
T PRK09554 37 TVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLE--- 110 (772)
T ss_pred eEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH---
Confidence 33333344555888999999999876532 122333 47999999999987543 3344555543
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++++||+|+.+......-.+.+ .+..+++++.+||++|+
T Consensus 111 -~giPvIvVlNK~Dl~~~~~i~id~~~L----~~~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 111 -LGIPCIVALNMLDIAEKQNIRIDIDAL----SARLGCPVIPLVSTRGR 154 (772)
T ss_pred -cCCCEEEEEEchhhhhccCcHHHHHHH----HHHhCCCEEEEEeecCC
Confidence 368999999999986432211111111 12345689999999874
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=99.13 E-value=4e-10 Score=79.86 Aligned_cols=106 Identities=22% Similarity=0.198 Sum_probs=69.2
Q ss_pred EEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566 15 VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK 93 (126)
Q Consensus 15 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 93 (126)
...+..++..+.++||||++.|-......+..+|++++|+|+.+.. .....+++..+ .. .++| ++++.||+|+.
T Consensus 136 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 136 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLA-KQ---VGVPNMVVFLNKQDQV 210 (478)
T ss_pred EEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHH-HH---cCCCeEEEEEeccccc
Confidence 3344457889999999999999877777788999999999988643 22334444433 22 3567 78899999987
Q ss_pred CCCC-HHHH----HhhcCcCcccCCceEEEEeeeeeC
Q psy6566 94 NSMS-PVEI----SNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 94 ~~~~-~~~v----~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+... .+.+ ...+...-.....++++.+||.+|
T Consensus 211 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 211 DDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA 247 (478)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence 5211 1112 222211111224678999999876
No 241
>CHL00071 tufA elongation factor Tu
Probab=99.13 E-value=6.3e-10 Score=77.68 Aligned_cols=105 Identities=22% Similarity=0.224 Sum_probs=67.2
Q ss_pred EEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCCC
Q psy6566 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKNS 95 (126)
Q Consensus 17 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 95 (126)
.+..++..+.+.||||+..|.......+..+|++++|+|+.+.- .......+..+ .. .++| ++++.||+|+.+.
T Consensus 69 ~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred EEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHH-HH---cCCCEEEEEEEccCCCCH
Confidence 34447788999999999988777666788999999999987532 22333334333 22 3567 7789999999753
Q ss_pred CC-HH----HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 96 MS-PV----EISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 96 ~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.. .+ ++...+.........++++.+||++|+
T Consensus 144 ~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 144 EELLELVELEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 21 11 122222111112234789999998873
No 242
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.13 E-value=4.5e-10 Score=68.45 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=68.9
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcc------hHHHHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQS------LRAAWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
...|++.....+.+++..+.+.|+||.-. .......++ +..|+++.|+|+++ ++.......++++.
T Consensus 31 pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~--- 104 (156)
T PF02421_consen 31 PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLEL--- 104 (156)
T ss_dssp TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHT---
T ss_pred CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHc---
Confidence 34677777788888999999999999422 233444444 68999999999876 44444555555543
Q ss_pred CCCeEEEEEecCCCCCCC----CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSM----SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++|++++.||+|..... ..+.+.+.+ +++++.+||++|+
T Consensus 105 -g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~~~ 147 (156)
T PF02421_consen 105 -GIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSARTGE 147 (156)
T ss_dssp -TSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTTTB
T ss_pred -CCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCCCc
Confidence 69999999999975421 223343333 5689999999874
No 243
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.12 E-value=8.1e-10 Score=76.48 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=75.2
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHH-----------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAW-----------STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-----------~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
+|.+.-...++.++.++.+.||+|..+-.... ...+..++.+++|+|++++-+-++.+ +..+...
T Consensus 212 TTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~--ia~~i~~-- 287 (444)
T COG1160 212 TTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR--IAGLIEE-- 287 (444)
T ss_pred ccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH--HHHHHHH--
Confidence 34444444556689999999999965533221 23367899999999998875544443 3333334
Q ss_pred CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.+++++.||+|+... ...++....+...+......+.+.+||++|.
T Consensus 288 -~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~ 337 (444)
T COG1160 288 -AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ 337 (444)
T ss_pred -cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCC
Confidence 57899999999998764 3344444444433334455689999999873
No 244
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.12 E-value=4.2e-10 Score=82.40 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=69.2
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
-|+......+..++.++.++||||++.|.......+..+|++++|+|+.+... ......+..+ ... ...+++++.|
T Consensus 90 ~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~-~~~--~~~~iivvvN 165 (632)
T PRK05506 90 ITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIA-SLL--GIRHVVLAVN 165 (632)
T ss_pred cCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHH-HHh--CCCeEEEEEE
Confidence 34555555666688899999999999887665566889999999999875321 1111222212 111 2357899999
Q ss_pred cCCCCCCC--CHHHHHhhcCcC--cccCCceEEEEeeeeeCC
Q psy6566 89 KQDIKNSM--SPVEISNLLDLT--SIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 89 K~D~~~~~--~~~~v~~~~~~~--~~~~~~~~~~~~Sa~~~~ 126 (126)
|+|+.+.. ...++...+... ...-...+++.+||++|+
T Consensus 166 K~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ 207 (632)
T PRK05506 166 KMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGD 207 (632)
T ss_pred ecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCC
Confidence 99986421 112222221100 001123578999999874
No 245
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.11 E-value=1.5e-09 Score=71.82 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=63.2
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
.+|+......+.+++..+.+|||||...|...+...++.+|++++|+|+++..... ....+..+ .. .++|.++++
T Consensus 49 ~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~-~~---~~~p~iivv 123 (268)
T cd04170 49 KMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVG-TEKLWEFA-DE---AGIPRIIFI 123 (268)
T ss_pred cccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHH-HH---cCCCEEEEE
Confidence 34555555667778999999999999988888888999999999999998754443 22333333 22 468999999
Q ss_pred ecCCCCCC
Q psy6566 88 NKQDIKNS 95 (126)
Q Consensus 88 nK~D~~~~ 95 (126)
||+|+...
T Consensus 124 NK~D~~~~ 131 (268)
T cd04170 124 NKMDRERA 131 (268)
T ss_pred ECCccCCC
Confidence 99998764
No 246
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.09 E-value=4.9e-10 Score=77.83 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=77.6
Q ss_pred EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
..+.++++.+.|.||||+..|....+..+.=.|++++++|+.+- ...+.+..+++.+.. +.+.|+|.||+|.+..
T Consensus 61 Tav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~A 135 (603)
T COG1217 61 TAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDA 135 (603)
T ss_pred ceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCC
Confidence 34556999999999999999999999999999999999998763 333455556777654 4566889999999886
Q ss_pred CCHHHHHhhcCc-----CcccCCceEEEEeeeeeC
Q psy6566 96 MSPVEISNLLDL-----TSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 96 ~~~~~v~~~~~~-----~~~~~~~~~~~~~Sa~~~ 125 (126)
...+.+.+.+.+ ....+..+++++.||+.|
T Consensus 136 rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G 170 (603)
T COG1217 136 RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNG 170 (603)
T ss_pred CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCc
Confidence 443333333221 112456789999999887
No 247
>KOG1489|consensus
Probab=99.06 E-value=2e-09 Score=71.60 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=66.2
Q ss_pred EEEEEEEcCCCcchH-------HHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhC-CCCCCCCeEEEEEecCC
Q psy6566 23 IHFIMWDLGGQQSLR-------AAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLN-HEDLSKAAVLIYANKQD 91 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~D 91 (126)
..+.+-|.||.-.-. ......++.|+.++||+|++.. +.++....++.++-. ...+.+.|.++|+||+|
T Consensus 244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD 323 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKID 323 (366)
T ss_pred ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccC
Confidence 448999999954322 2334468899999999999987 677777666655422 23457899999999999
Q ss_pred CCC-CCCH-HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 92 IKN-SMSP-VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 92 ~~~-~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++ +.+. +++...+.. -.++.+||++++
T Consensus 324 ~~eae~~~l~~L~~~lq~-------~~V~pvsA~~~e 353 (366)
T KOG1489|consen 324 LPEAEKNLLSSLAKRLQN-------PHVVPVSAKSGE 353 (366)
T ss_pred chhHHHHHHHHHHHHcCC-------CcEEEeeecccc
Confidence 954 2221 334433331 158999999875
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=99.05 E-value=3.2e-09 Score=73.89 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=68.3
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEe
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYAN 88 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~n 88 (126)
|+......+..++..+.+.||||+..|.......+..+|++++|+|+.+... .....++..+ .. .++|.+ ++.|
T Consensus 62 Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvN 136 (396)
T PRK00049 62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLN 136 (396)
T ss_pred EEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEe
Confidence 3333333333377889999999998887776677889999999999876422 2233334333 22 357865 6899
Q ss_pred cCCCCCCCC-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 89 KQDIKNSMS-PV----EISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 89 K~D~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
|+|+.+... .+ ++...+.........++++.+||++|
T Consensus 137 K~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g 178 (396)
T PRK00049 137 KCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA 178 (396)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccc
Confidence 999964211 11 12222211111123578999999875
No 249
>KOG0099|consensus
Probab=99.03 E-value=8e-10 Score=71.90 Aligned_cols=86 Identities=23% Similarity=0.431 Sum_probs=74.1
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 78 (126)
-|.|+....+++..+.|+++|++||...+..|-.++.+..+++||+..++ .+.++++..+++.+-.+.++
T Consensus 188 lTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL 267 (379)
T KOG0099|consen 188 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL 267 (379)
T ss_pred hccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH
Confidence 36778888899999999999999999999999999999999999998663 35667777777777777788
Q ss_pred CCCeEEEEEecCCCCC
Q psy6566 79 SKAAVLIYANKQDIKN 94 (126)
Q Consensus 79 ~~~piilv~nK~D~~~ 94 (126)
..+.+++..||.|+..
T Consensus 268 ~tisvIlFLNKqDlla 283 (379)
T KOG0099|consen 268 RTISVILFLNKQDLLA 283 (379)
T ss_pred hhhheeEEecHHHHHH
Confidence 8899999999999764
No 250
>PRK12739 elongation factor G; Reviewed
Probab=99.03 E-value=3.8e-09 Score=78.14 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=62.2
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
-|+......+.+++.++.++||||+..|...+...++.+|++++|+|+.+..... ....+.... . .++|.++++|
T Consensus 59 iti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~~-~---~~~p~iv~iN 133 (691)
T PRK12739 59 ITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQAD-K---YGVPRIVFVN 133 (691)
T ss_pred CCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHH-H---cCCCEEEEEE
Confidence 4555556667779999999999999989888888999999999999988653322 223333332 2 4689999999
Q ss_pred cCCCCCC
Q psy6566 89 KQDIKNS 95 (126)
Q Consensus 89 K~D~~~~ 95 (126)
|+|+.+.
T Consensus 134 K~D~~~~ 140 (691)
T PRK12739 134 KMDRIGA 140 (691)
T ss_pred CCCCCCC
Confidence 9999864
No 251
>PRK12740 elongation factor G; Reviewed
Probab=99.03 E-value=5.6e-09 Score=77.03 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=66.0
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
...|++.....+.+++..+.+|||||+..+...+..+++.+|++++|+|+++....... ..+..+. . .++|++++
T Consensus 44 rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~-~---~~~p~iiv 118 (668)
T PRK12740 44 RGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAE-K---YGVPRIIF 118 (668)
T ss_pred cCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHH-H---cCCCEEEE
Confidence 34677777778888999999999999999888888889999999999999876544433 3343332 2 46899999
Q ss_pred EecCCCCCC
Q psy6566 87 ANKQDIKNS 95 (126)
Q Consensus 87 ~nK~D~~~~ 95 (126)
+||+|+...
T Consensus 119 ~NK~D~~~~ 127 (668)
T PRK12740 119 VNKMDRAGA 127 (668)
T ss_pred EECCCCCCC
Confidence 999998763
No 252
>COG1159 Era GTPase [General function prediction only]
Probab=99.03 E-value=4.4e-09 Score=69.44 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=65.6
Q ss_pred ceEEEEEE-CCEEEEEEEcCCCcchH--------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 13 SNVEEVIW-KNIHFIMWDLGGQQSLR--------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 13 ~~~~~~~~-~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
-....+.. +..++.+.||||.-.-+ ......+..+|.++||+|+++.-.. -..++.+.++. .+.|+
T Consensus 43 ~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pv 117 (298)
T COG1159 43 NRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPV 117 (298)
T ss_pred hheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCe
Confidence 33344444 78899999999953322 2334458899999999999874222 22233344333 46799
Q ss_pred EEEEecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++.||+|...... ...+....... .....++.+||++|.
T Consensus 118 il~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~g~ 158 (298)
T COG1159 118 ILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALKGD 158 (298)
T ss_pred EEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccccC
Confidence 99999999876433 12222222111 122379999999873
No 253
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.02 E-value=1.5e-09 Score=76.51 Aligned_cols=99 Identities=19% Similarity=0.140 Sum_probs=62.7
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH--
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE-- 100 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-- 100 (126)
..+.+.|+||++.|-.....-...+|++++|+|+.+...-...++++.. .... .-.+++++.||+|+.......+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~l--gi~~iIVvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAA-VEIM--KLKHIIILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHH-HHHc--CCCcEEEEEecccccCHHHHHHHH
Confidence 4689999999999977766678899999999999863111222233322 2221 2246899999999875321112
Q ss_pred --HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 101 --ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 101 --v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+...+... .....+++.+||++|+
T Consensus 194 ~ei~~~l~~~--~~~~~~iipVSA~~G~ 219 (460)
T PTZ00327 194 EEIRNFVKGT--IADNAPIIPISAQLKY 219 (460)
T ss_pred HHHHHHHHhh--ccCCCeEEEeeCCCCC
Confidence 22211111 1235689999999874
No 254
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.02 E-value=5.2e-09 Score=63.93 Aligned_cols=115 Identities=20% Similarity=0.126 Sum_probs=63.4
Q ss_pred ccCCccCceEEE--EEECCEEEEEEEcCCCc----------chHHHHHhhcc---CCcEEEEEEECCCcccHHHHHHHHH
Q psy6566 6 HTSPTIGSNVEE--VIWKNIHFIMWDLGGQQ----------SLRAAWSTYYT---NTEFVILVIDSTDRERISLTKEELY 70 (126)
Q Consensus 6 ~~~pTi~~~~~~--~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~ 70 (126)
.+.+|.+..... +..+. .+.+|||+|.. .+......++. .++++++++|.....+.... .+.
T Consensus 27 ~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~ 103 (170)
T cd01876 27 RTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL--EML 103 (170)
T ss_pred eecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH--HHH
Confidence 456666654332 22333 89999999942 34444455554 35788999998765322211 111
Q ss_pred HHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeCC
Q psy6566 71 KMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTGE 126 (126)
Q Consensus 71 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~ 126 (126)
..+.. .+.|+++++||+|+.................. .....+++++||+++.
T Consensus 104 ~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 104 DWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred HHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence 22222 24799999999998643221212111111110 1334578899999873
No 255
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.00 E-value=4.1e-09 Score=73.08 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=68.9
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchH---------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR---------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
.|-+-......+.+..|.+.||+|.+... .+....+..||+++||+|.-.- .....+.+.+.++. .
T Consensus 37 vTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G--it~~D~~ia~~Lr~---~ 111 (444)
T COG1160 37 VTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG--ITPADEEIAKILRR---S 111 (444)
T ss_pred CccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC--CCHHHHHHHHHHHh---c
Confidence 44445556677788889999999976322 2345568899999999997652 22333446666663 5
Q ss_pred CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+.|++++.||+|-.... ....+...+.+. ..+.+||..|
T Consensus 112 ~kpviLvvNK~D~~~~e--~~~~efyslG~g-----~~~~ISA~Hg 150 (444)
T COG1160 112 KKPVILVVNKIDNLKAE--ELAYEFYSLGFG-----EPVPISAEHG 150 (444)
T ss_pred CCCEEEEEEcccCchhh--hhHHHHHhcCCC-----CceEeehhhc
Confidence 79999999999976421 222333222222 5788888776
No 256
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=2.8e-09 Score=74.31 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCH--
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSP-- 98 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-- 98 (126)
+...+++.||||+-.|.-...+.+..|.|+++|+|+++--..+.+...+..+ + .+..++-|.||+||+.....
T Consensus 74 ~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adperv 148 (603)
T COG0481 74 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERV 148 (603)
T ss_pred CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHH
Confidence 4478999999999999887777899999999999998754333343333333 2 46889999999999875321
Q ss_pred -HHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 99 -VEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 99 -~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
.++.+.++.... ..+.+|||+|
T Consensus 149 k~eIe~~iGid~~-----dav~~SAKtG 171 (603)
T COG0481 149 KQEIEDIIGIDAS-----DAVLVSAKTG 171 (603)
T ss_pred HHHHHHHhCCCcc-----hheeEecccC
Confidence 233444443322 4688999998
No 257
>PLN03127 Elongation factor Tu; Provisional
Probab=98.97 E-value=6.1e-09 Score=73.47 Aligned_cols=111 Identities=19% Similarity=0.137 Sum_probs=67.4
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEE
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYA 87 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~ 87 (126)
-|+......+..++.++.+.||||++.|-.........+|++++|+|+.+... ......+..+ .. .++| ++++.
T Consensus 110 iTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvvi 184 (447)
T PLN03127 110 ITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFL 184 (447)
T ss_pred ceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEE
Confidence 35555444455577899999999999887766556678999999999876422 2233333333 22 3578 57889
Q ss_pred ecCCCCCCCC-HHHHHhhcCcC----cccCCceEEEEeeeee
Q psy6566 88 NKQDIKNSMS-PVEISNLLDLT----SIKKQQWHIQSCCALT 124 (126)
Q Consensus 88 nK~D~~~~~~-~~~v~~~~~~~----~~~~~~~~~~~~Sa~~ 124 (126)
||+|+.+... .+.+...+... ......++++.+||.+
T Consensus 185 NKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~s 226 (447)
T PLN03127 185 NKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALS 226 (447)
T ss_pred EeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccce
Confidence 9999875211 11122111100 0112357888888763
No 258
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.97 E-value=2.6e-09 Score=72.04 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=73.9
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
=||.+....|.-++.+|.+-||||+++|....-.-...|+..++++|+- ..-+++.+.+- .+...- .=.-+++..|
T Consensus 72 ITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR-~Gvl~QTrRHs-~I~sLL--GIrhvvvAVN 147 (431)
T COG2895 72 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR-KGVLEQTRRHS-FIASLL--GIRHVVVAVN 147 (431)
T ss_pred ceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc-hhhHHHhHHHH-HHHHHh--CCcEEEEEEe
Confidence 4666777777779999999999999999887766678899999999973 33344443321 111111 2235889999
Q ss_pred cCCCCCCC--CHHHHHhhcCcCcc---cCCceEEEEeeeeeCC
Q psy6566 89 KQDIKNSM--SPVEISNLLDLTSI---KKQQWHIQSCCALTGE 126 (126)
Q Consensus 89 K~D~~~~~--~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~ 126 (126)
|+||.+-. ..+++...+. .++ .-....++.+||..|+
T Consensus 148 KmDLvdy~e~~F~~I~~dy~-~fa~~L~~~~~~~IPiSAl~GD 189 (431)
T COG2895 148 KMDLVDYSEEVFEAIVADYL-AFAAQLGLKDVRFIPISALLGD 189 (431)
T ss_pred eecccccCHHHHHHHHHHHH-HHHHHcCCCcceEEechhccCC
Confidence 99998732 1223322221 111 2234479999999874
No 259
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=5.7e-09 Score=71.59 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=74.6
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc------cHHHHHHHHHHHhCCCCCCCCe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE------RISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p 82 (126)
-|+......+..+...+.|.|+||+..|-...-.-...||+.++|+|+.+.+ .-...++ ...+.+. +.-..
T Consensus 71 vTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~t--lGi~~ 147 (428)
T COG5256 71 VTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLART--LGIKQ 147 (428)
T ss_pred eEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHh--cCCce
Confidence 3566666777778889999999999999877776788999999999987652 1111122 1112222 13346
Q ss_pred EEEEEecCCCCC--CCCHHHHHhhcCc---Cc-ccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKN--SMSPVEISNLLDL---TS-IKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~--~~~~~~v~~~~~~---~~-~~~~~~~~~~~Sa~~~~ 126 (126)
++++.||+|+.+ +...+++...... .. .+..+++|+.+||.+|+
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~ 197 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGD 197 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCC
Confidence 899999999976 1222333332221 11 13346789999999884
No 260
>PRK09866 hypothetical protein; Provisional
Probab=98.90 E-value=2.5e-08 Score=72.36 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=60.9
Q ss_pred CEEEEEEEcCCCcc-----hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC
Q psy6566 22 NIHFIMWDLGGQQS-----LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM 96 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~-----~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 96 (126)
...+.+.||||... ........++.+|.++||+|..+..+..+. .+.+.++... .+.|+++++||+|+.+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~-K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVG-QSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcC-CCCCEEEEEEcccCCCcc
Confidence 46789999999743 222333468999999999998864333322 2333333321 235999999999986421
Q ss_pred C--HHHHHhhcCcC--cccCCceEEEEeeeeeCC
Q psy6566 97 S--PVEISNLLDLT--SIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 97 ~--~~~v~~~~~~~--~~~~~~~~~~~~Sa~~~~ 126 (126)
. .+.+....... ......-.++.+||++|.
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~ 339 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGY 339 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Confidence 1 23333332211 111123369999999873
No 261
>KOG0085|consensus
Probab=98.88 E-value=1.8e-10 Score=73.74 Aligned_cols=89 Identities=24% Similarity=0.414 Sum_probs=77.3
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST----------DRERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~ 76 (126)
..||.|+..+.+.++.+.+.+.|.+||...+..|-+++++...++|++..+ +.+..++.+-++.-++..+
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 469999999999999999999999999999999999999988887776543 3566777777888888889
Q ss_pred CCCCCeEEEEEecCCCCCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~ 95 (126)
+..+.++++..||.|+.++
T Consensus 263 WF~nssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEE 281 (359)
T ss_pred cccCCceEEEechhhhhhh
Confidence 9999999999999998764
No 262
>PRK00007 elongation factor G; Reviewed
Probab=98.87 E-value=4.8e-08 Score=72.39 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
-|+......+.+++..+.+.||||+..|.......++.+|++++|+|+.+.-.... ...+..+.+ .++|.+++.|
T Consensus 61 ~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vN 135 (693)
T PRK00007 61 ITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVN 135 (693)
T ss_pred CCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEE
Confidence 34444445566689999999999998887777777899999999999876433322 333444332 3578899999
Q ss_pred cCCCCCC
Q psy6566 89 KQDIKNS 95 (126)
Q Consensus 89 K~D~~~~ 95 (126)
|+|+.+.
T Consensus 136 K~D~~~~ 142 (693)
T PRK00007 136 KMDRTGA 142 (693)
T ss_pred CCCCCCC
Confidence 9999764
No 263
>PRK13768 GTPase; Provisional
Probab=98.85 E-value=5.6e-09 Score=68.64 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=44.1
Q ss_pred EEEEEEEcCCCcch---HHHHHhhc---cC--CcEEEEEEECCCcccHHHHHH--HHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 23 IHFIMWDLGGQQSL---RAAWSTYY---TN--TEFVILVIDSTDRERISLTKE--ELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~---~~~~~~~~---~~--~~~~l~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
..+.+||+||+... +..+..++ .. ++++++++|+.......+... ++....... .++|++++.||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhh
Confidence 47899999998664 33333332 22 899999999865433322211 111111111 46899999999998
Q ss_pred CCC
Q psy6566 93 KNS 95 (126)
Q Consensus 93 ~~~ 95 (126)
.+.
T Consensus 175 ~~~ 177 (253)
T PRK13768 175 LSE 177 (253)
T ss_pred cCc
Confidence 764
No 264
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.83 E-value=4.6e-08 Score=65.52 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=60.9
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcc--hH------HHHHhhc-cCCcEEEEEEECCCc--ccHHHHHHHHHHHhCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQS--LR------AAWSTYY-TNTEFVILVIDSTDR--ERISLTKEELYKMLNHED 77 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~--~~------~~~~~~~-~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~ 77 (126)
+|-+++...+..+...+|+.||||.-. +. .+.-..+ .-+++++|++|.+.. -+.+....++.++...
T Consensus 201 TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~-- 278 (346)
T COG1084 201 TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL-- 278 (346)
T ss_pred cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh--
Confidence 455566666666888999999999421 11 1111112 237889999998864 4777777777777554
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEIS 102 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~ 102 (126)
-+.|+++|.||+|+......+++.
T Consensus 279 -f~~p~v~V~nK~D~~~~e~~~~~~ 302 (346)
T COG1084 279 -FKAPIVVVINKIDIADEEKLEEIE 302 (346)
T ss_pred -cCCCeEEEEecccccchhHHHHHH
Confidence 348999999999988643334433
No 265
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.80 E-value=1.8e-08 Score=60.67 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=47.4
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEee
Q psy6566 42 TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121 (126)
Q Consensus 42 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 121 (126)
..++.+|++++|+|+.++.+..+. .+...+.... .+.|+++++||+|+..+.........+ +..+..++.+|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~iS 78 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPP--DLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFFS 78 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCH--HHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEEE
Confidence 358899999999999876543311 2233333211 468999999999986532111122221 12235789999
Q ss_pred eeeCC
Q psy6566 122 ALTGE 126 (126)
Q Consensus 122 a~~~~ 126 (126)
|++++
T Consensus 79 a~~~~ 83 (141)
T cd01857 79 ALKEN 83 (141)
T ss_pred ecCCC
Confidence 98763
No 266
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.79 E-value=1.5e-08 Score=61.84 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=49.9
Q ss_pred hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce
Q psy6566 36 LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW 115 (126)
Q Consensus 36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~ 115 (126)
++.++++..+++|.+++|+|+.++...... .+...+.. .+.|+++++||+|+........... .....+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~-----~~~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKS-----IKESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHH-----HHHhCCC
Confidence 456778888999999999999775432221 12222222 3689999999999864211111111 1112335
Q ss_pred EEEEeeeeeCC
Q psy6566 116 HIQSCCALTGE 126 (126)
Q Consensus 116 ~~~~~Sa~~~~ 126 (126)
+++.+||++|.
T Consensus 72 ~~~~iSa~~~~ 82 (156)
T cd01859 72 PVVYVSAKERL 82 (156)
T ss_pred cEEEEEccccc
Confidence 68999999873
No 267
>KOG1707|consensus
Probab=98.78 E-value=6.2e-09 Score=73.93 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEecCCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED--LSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~ 95 (126)
+.+...+.||+..+.-+.....-+++|+++.++++.+++.+.+.+...|..+++... ..++|+|+||||+|....
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 667799999998777776667779999999999999999999999888888887643 247899999999998753
No 268
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.77 E-value=5.9e-08 Score=72.22 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=58.6
Q ss_pred cCCccCceEEE----EEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 7 TSPTIGSNVEE----VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 7 ~~pTi~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
..+|+...... +..++..+.+|||||+..|.......++.+|++++|+|+.+.-..+ ....+....+ .+.|
T Consensus 66 rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~----~~~p 140 (720)
T TIGR00490 66 RGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALK----ENVK 140 (720)
T ss_pred hcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHH----cCCC
Confidence 34577644333 2337789999999999999888888899999999999987632221 2222333322 3567
Q ss_pred EEEEEecCCCCC
Q psy6566 83 VLIYANKQDIKN 94 (126)
Q Consensus 83 iilv~nK~D~~~ 94 (126)
.++++||+|...
T Consensus 141 ~ivviNKiD~~~ 152 (720)
T TIGR00490 141 PVLFINKVDRLI 152 (720)
T ss_pred EEEEEEChhccc
Confidence 889999999864
No 269
>COG2262 HflX GTPases [General function prediction only]
Probab=98.76 E-value=1.6e-07 Score=64.61 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=72.5
Q ss_pred CccCceEEEEEE-CCEEEEEEEcCCC---------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 9 PTIGSNVEEVIW-KNIHFIMWDLGGQ---------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 9 pTi~~~~~~~~~-~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
.|.....+.+.+ ++..+.+-||-|= +-|++..+. ...||.++.|+|++++...+.+.. ...++.....
T Consensus 225 ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~ 302 (411)
T COG2262 225 ATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGA 302 (411)
T ss_pred ccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCC
Confidence 566777788888 4789999999992 334444443 567999999999999865555543 4455555444
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+|++++.||+|+..... ........ . + ..+.+||++|+
T Consensus 303 ~~~p~i~v~NKiD~~~~~~---~~~~~~~~---~-~-~~v~iSA~~~~ 342 (411)
T COG2262 303 DEIPIILVLNKIDLLEDEE---ILAELERG---S-P-NPVFISAKTGE 342 (411)
T ss_pred CCCCEEEEEecccccCchh---hhhhhhhc---C-C-CeEEEEeccCc
Confidence 6799999999999765321 11111101 0 1 47889999874
No 270
>PRK12289 GTPase RsgA; Reviewed
Probab=98.70 E-value=4.1e-08 Score=67.28 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=51.2
Q ss_pred HHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEE
Q psy6566 40 WSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQ 118 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~ 118 (126)
.+..+.++|.+++|+|+.++. ....+..++..+ .. .++|+++|+||+|+............+ ...++.++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEE
Confidence 344588999999999998775 444445555444 22 578999999999996531111122211 23456789
Q ss_pred EeeeeeCC
Q psy6566 119 SCCALTGE 126 (126)
Q Consensus 119 ~~Sa~~~~ 126 (126)
.+||++|.
T Consensus 154 ~iSA~tg~ 161 (352)
T PRK12289 154 FISVETGI 161 (352)
T ss_pred EEEcCCCC
Confidence 99999873
No 271
>KOG3886|consensus
Probab=98.68 E-value=6e-08 Score=62.22 Aligned_cols=87 Identities=23% Similarity=0.336 Sum_probs=64.6
Q ss_pred cCCccCceEEEEEE-CCEEEEEEEcCCCcchHH-----HHHhhccCCcEEEEEEECCCcccHHHHHH---HHHHHhCCCC
Q psy6566 7 TSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRA-----AWSTYYTNTEFVILVIDSTDRERISLTKE---ELYKMLNHED 77 (126)
Q Consensus 7 ~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~~~~l~v~d~~~~~~~~~~~~---~~~~~~~~~~ 77 (126)
..+||++.+..+++ ++..+.+||.+||+.+-. ..+..++..++++++||+...+--.++.. -++.+++.
T Consensus 36 lg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~-- 113 (295)
T KOG3886|consen 36 LGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN-- 113 (295)
T ss_pred cCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--
Confidence 46788898888888 779999999999986533 34566899999999999876543333322 22334433
Q ss_pred CCCCeEEEEEecCCCCCC
Q psy6566 78 LSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~ 95 (126)
.|...+....+|.|+...
T Consensus 114 SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 114 SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred CCcceEEEEEeechhccc
Confidence 378889999999999764
No 272
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.66 E-value=5e-08 Score=61.45 Aligned_cols=84 Identities=18% Similarity=0.134 Sum_probs=49.8
Q ss_pred hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC-CHHHHHhhc---CcCccc
Q psy6566 36 LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM-SPVEISNLL---DLTSIK 111 (126)
Q Consensus 36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~v~~~~---~~~~~~ 111 (126)
++.++..+++.++++++|+|+.++..- +...+... ..+.|+++|+||+|+.... ....+.... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 678889999999999999999875311 11111111 1468999999999986432 222222111 000000
Q ss_pred CCceEEEEeeeeeCC
Q psy6566 112 KQQWHIQSCCALTGE 126 (126)
Q Consensus 112 ~~~~~~~~~Sa~~~~ 126 (126)
.....++.+||++|+
T Consensus 97 ~~~~~i~~vSA~~~~ 111 (190)
T cd01855 97 LKPKDVILISAKKGW 111 (190)
T ss_pred CCcccEEEEECCCCC
Confidence 111258999999874
No 273
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.66 E-value=3.8e-07 Score=61.83 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=28.8
Q ss_pred CEEEEEEEcCCC----cchHHHHHh---hccCCcEEEEEEECCC
Q psy6566 22 NIHFIMWDLGGQ----QSLRAAWST---YYTNTEFVILVIDSTD 58 (126)
Q Consensus 22 ~~~~~i~Dt~G~----~~~~~~~~~---~~~~~~~~l~v~d~~~ 58 (126)
.+.+++|||||. +..+.+-.. .++.||++++|+|+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 368999999997 445544333 5899999999999873
No 274
>PRK00098 GTPase RsgA; Reviewed
Probab=98.62 E-value=6.5e-08 Score=65.08 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=48.4
Q ss_pred ccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeee
Q psy6566 44 YTNTEFVILVIDSTDRERISLT-KEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122 (126)
Q Consensus 44 ~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 122 (126)
..++|.+++|+|+.++++.... ..|+..+ .. .++|+++++||+|+.... ....... ...+..+++++.+||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~--~~~~~~~--~~~~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDL--EEARELL--ALYRAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCH--HHHHHHH--HHHHHCCCeEEEEeC
Confidence 5889999999999887665554 3444333 33 578999999999996321 1111110 111233568999999
Q ss_pred eeCC
Q psy6566 123 LTGE 126 (126)
Q Consensus 123 ~~~~ 126 (126)
++|+
T Consensus 150 ~~g~ 153 (298)
T PRK00098 150 KEGE 153 (298)
T ss_pred CCCc
Confidence 9873
No 275
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.61 E-value=1.5e-07 Score=63.07 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=52.0
Q ss_pred hccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEee
Q psy6566 43 YYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 121 (126)
.+.++|.+++|+|+.++. ++..+.+|+..+. . .++|+++++||+|+.... ..... .......+++++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~-~---~~ip~iIVlNK~DL~~~~--~~~~~---~~~~~~~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAE-A---AGIEPVIVLTKADLLDDE--EEELE---LVEALALGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHH-H---cCCCEEEEEEHHHCCChH--HHHHH---HHHHHhCCCeEEEEE
Confidence 478999999999999887 7777777665443 2 468999999999996531 11110 011112456899999
Q ss_pred eeeCC
Q psy6566 122 ALTGE 126 (126)
Q Consensus 122 a~~~~ 126 (126)
|+++.
T Consensus 146 A~~g~ 150 (287)
T cd01854 146 AKTGE 150 (287)
T ss_pred CCCCc
Confidence 99873
No 276
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.60 E-value=2.1e-07 Score=61.96 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=48.1
Q ss_pred cCCccCceEEEEEE--CC--EEEEEEEcCCCcch-------HH-------------------HHHhhcc--CCcEEEEEE
Q psy6566 7 TSPTIGSNVEEVIW--KN--IHFIMWDLGGQQSL-------RA-------------------AWSTYYT--NTEFVILVI 54 (126)
Q Consensus 7 ~~pTi~~~~~~~~~--~~--~~~~i~Dt~G~~~~-------~~-------------------~~~~~~~--~~~~~l~v~ 54 (126)
..+|+++......+ ++ +.+.+|||||-..+ .. .+...+. .+|+++|++
T Consensus 43 ~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i 122 (276)
T cd01850 43 IDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFI 122 (276)
T ss_pred cCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEE
Confidence 45676655544444 45 67999999993221 10 0112222 478899999
Q ss_pred ECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 55 DSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 55 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+.+.......-...++.+. ..+|+++|+||+|+..
T Consensus 123 ~~~~~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 123 EPTGHGLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred eCCCCCCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 8765221111122233332 2589999999999865
No 277
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3.5e-07 Score=63.54 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=61.5
Q ss_pred EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
.++.++++.+.+.||||++.|..--..-+..+|.+++|+|+..--.. ...+ +.++.+. .++|++-+.||.|...-
T Consensus 74 MqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~K-LfeVcrl---R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 74 MQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLK-LFEVCRL---RDIPIFTFINKLDREGR 148 (528)
T ss_pred EEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccH-HHHH-HHHHHhh---cCCceEEEeeccccccC
Confidence 44555999999999999999988777778899999999998753222 1223 3344444 68999999999998763
Q ss_pred CC---HHHHHhhcC
Q psy6566 96 MS---PVEISNLLD 106 (126)
Q Consensus 96 ~~---~~~v~~~~~ 106 (126)
.. .+++.+.++
T Consensus 149 dP~ELLdEiE~~L~ 162 (528)
T COG4108 149 DPLELLDEIEEELG 162 (528)
T ss_pred ChHHHHHHHHHHhC
Confidence 32 234555444
No 278
>PTZ00416 elongation factor 2; Provisional
Probab=98.53 E-value=5.7e-07 Score=68.01 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=52.8
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
+..+.+.||||+..|.......++.+|++++|+|+.+.-.. .....|..+.. .++|++++.||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 56799999999999988888889999999999998864222 23344555543 357999999999987
No 279
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=8e-07 Score=65.68 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=60.3
Q ss_pred ceEEEEEECC-EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 13 SNVEEVIWKN-IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 13 ~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
...-++.+++ ..+.++||||+-.|.......++-+|+++.|+|+.+--.. .....|.+..+. ++|.+++.||+|
T Consensus 65 saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~~----~vp~i~fiNKmD 139 (697)
T COG0480 65 SAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADKY----GVPRILFVNKMD 139 (697)
T ss_pred eeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhhc----CCCeEEEEECcc
Confidence 3334555575 9999999999999999999999999999999998864221 223346666543 689999999999
Q ss_pred CCCC
Q psy6566 92 IKNS 95 (126)
Q Consensus 92 ~~~~ 95 (126)
....
T Consensus 140 R~~a 143 (697)
T COG0480 140 RLGA 143 (697)
T ss_pred cccc
Confidence 8763
No 280
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.52 E-value=7e-06 Score=47.56 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=48.0
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcch---------HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSL---------RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
.|.......+.+++..+.++||||...- .......+..+|++++|+|..++.. +...+.+..+ + .
T Consensus 33 ~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~ 106 (116)
T PF01926_consen 33 TTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILREL-K----N 106 (116)
T ss_dssp SSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHH-H----T
T ss_pred ceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHH-h----c
Confidence 3344544566779999999999996321 1112233589999999999766311 2222323333 2 5
Q ss_pred CCeEEEEEec
Q psy6566 80 KAAVLIYANK 89 (126)
Q Consensus 80 ~~piilv~nK 89 (126)
+.|+++|.||
T Consensus 107 ~~~~i~v~NK 116 (116)
T PF01926_consen 107 KKPIILVLNK 116 (116)
T ss_dssp TSEEEEEEES
T ss_pred CCCEEEEEcC
Confidence 6899999998
No 281
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.51 E-value=8.1e-08 Score=66.19 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=53.2
Q ss_pred CcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCccc
Q psy6566 33 QQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIK 111 (126)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~ 111 (126)
.+.|..+...+.+.++++++|+|+.+... .....+...+ .+.|+++|+||+|+... ...+.+..... ...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 56788888888899999999999876531 1111222222 35799999999998642 22233322211 1111
Q ss_pred CCce---EEEEeeeeeCC
Q psy6566 112 KQQW---HIQSCCALTGE 126 (126)
Q Consensus 112 ~~~~---~~~~~Sa~~~~ 126 (126)
..++ .++.+||++|.
T Consensus 122 ~~g~~~~~i~~vSAk~g~ 139 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGN 139 (360)
T ss_pred HcCCCcCcEEEecCCCCC
Confidence 2222 48899999874
No 282
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.48 E-value=8.8e-07 Score=59.83 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=48.9
Q ss_pred CCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCccc---HHHHHHHHHHHhC-CCCCCCCeEEEEEec
Q psy6566 21 KNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRER---ISLTKEELYKMLN-HEDLSKAAVLIYANK 89 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~~~-~~~~~~~piilv~nK 89 (126)
..-.|.+-|.||.-. ........++.|..+++|+|++..+. .++......++-. ...+.+.|.++++||
T Consensus 205 ~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NK 284 (369)
T COG0536 205 GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNK 284 (369)
T ss_pred CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEec
Confidence 566799999998532 12233445788999999999986442 4444333333322 234568899999999
Q ss_pred CCCCC
Q psy6566 90 QDIKN 94 (126)
Q Consensus 90 ~D~~~ 94 (126)
+|+..
T Consensus 285 iD~~~ 289 (369)
T COG0536 285 IDLPL 289 (369)
T ss_pred cCCCc
Confidence 99654
No 283
>KOG0458|consensus
Probab=98.46 E-value=3.7e-07 Score=65.18 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=70.4
Q ss_pred EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH------HHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT------KEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~~piilv~nK 89 (126)
..+.-....+.+.|+||+..|-...-.-...||+.++|+|++.- .|+.- .+....+++. +.-..++++.||
T Consensus 248 ~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~--Lgi~qlivaiNK 324 (603)
T KOG0458|consen 248 TWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRS--LGISQLIVAINK 324 (603)
T ss_pred EEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHH--cCcceEEEEeec
Confidence 33444778899999999999988777778889999999998742 23221 1122333333 234578999999
Q ss_pred CCCCC--CCCHHHHHhhcC----cC-cccCCceEEEEeeeeeCC
Q psy6566 90 QDIKN--SMSPVEISNLLD----LT-SIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 90 ~D~~~--~~~~~~v~~~~~----~~-~~~~~~~~~~~~Sa~~~~ 126 (126)
+|+.+ +.+.+++...+. +. -.....+.|+.||+.+|+
T Consensus 325 mD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~Ge 368 (603)
T KOG0458|consen 325 MDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGE 368 (603)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCC
Confidence 99875 223334333222 11 124556789999999885
No 284
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.46 E-value=1.4e-06 Score=65.98 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=53.3
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
+..+.++||||+..|.......++.+|++++|+|+.+.-... ....|..+.. .++|++++.||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence 678899999999999988888899999999999988643222 2334555543 468999999999987
No 285
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.46 E-value=7.3e-07 Score=53.54 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=54.3
Q ss_pred EEEEcCCC----cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC-CCCHHH
Q psy6566 26 IMWDLGGQ----QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN-SMSPVE 100 (126)
Q Consensus 26 ~i~Dt~G~----~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~ 100 (126)
.+.||||- ..+.......-..|+.++++.|++++.+.-.-. +... -+.|++=|.+|+|+.. ..+.+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~--fa~~------f~~pvIGVITK~Dl~~~~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG--FASM------FNKPVIGVITKIDLPSDDANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch--hhcc------cCCCEEEEEECccCccchhhHHH
Confidence 35899994 333333334456899999999999864322111 1111 3579999999999983 323333
Q ss_pred HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 101 ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 101 v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.+...-.+ .+|++|+.+|+
T Consensus 111 a~~~L~~aG~~----~if~vS~~~~e 132 (143)
T PF10662_consen 111 AKKWLKNAGVK----EIFEVSAVTGE 132 (143)
T ss_pred HHHHHHHcCCC----CeEEEECCCCc
Confidence 33333222121 36999999885
No 286
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.45 E-value=1.4e-06 Score=65.08 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=52.3
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
++..+.+.||||+..|.......++.+|++++|+|+.+.-.. .....|....+. +.|.+++.||+|+..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc----CCCeEEEEECchhhc
Confidence 468899999999999988888889999999999998764222 233345444332 457789999999763
No 287
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.40 E-value=1.4e-06 Score=53.29 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=43.8
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeee
Q psy6566 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 122 (126)
.++.+|.+++|+|+.++..-. ...+...+... ..+.|++++.||+|+............+.. ......+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence 478899999999998763211 11233333321 245899999999999653211122222221 12233577898
Q ss_pred eeC
Q psy6566 123 LTG 125 (126)
Q Consensus 123 ~~~ 125 (126)
+++
T Consensus 78 ~~~ 80 (157)
T cd01858 78 NNP 80 (157)
T ss_pred ccc
Confidence 865
No 288
>PRK12288 GTPase RsgA; Reviewed
Probab=98.38 E-value=1.2e-06 Score=60.10 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=51.2
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeee
Q psy6566 44 YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCAL 123 (126)
Q Consensus 44 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 123 (126)
..++|.+++|++.....++..+..|+... .. .++|.++++||+|+........+..... . ....+++++.+||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~-~-y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLD-I-YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHH-H-HHhCCCeEEEEeCC
Confidence 35689999999987777888888776544 22 5689999999999975321111111111 1 12345689999999
Q ss_pred eCC
Q psy6566 124 TGE 126 (126)
Q Consensus 124 ~~~ 126 (126)
+++
T Consensus 192 tg~ 194 (347)
T PRK12288 192 TGE 194 (347)
T ss_pred CCc
Confidence 864
No 289
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=3.4e-06 Score=58.67 Aligned_cols=111 Identities=13% Similarity=0.036 Sum_probs=74.7
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVL 84 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pii 84 (126)
..|+...++....++..+.|.|.+|.+++-...-.-+...|.++++++.++ +.+.+.+ . ++..- .-...+
T Consensus 35 G~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL----~-iLdll--gi~~gi 107 (447)
T COG3276 35 GITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL----L-ILDLL--GIKNGI 107 (447)
T ss_pred CceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH----H-HHHhc--CCCceE
Confidence 456777777777777799999999999998777777888999999999854 3333322 1 22221 334569
Q ss_pred EEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++.+|+|..++...++.......... -...+++.+||++|+
T Consensus 108 ivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~ 148 (447)
T COG3276 108 IVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGR 148 (447)
T ss_pred EEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCC
Confidence 99999999875444443333222211 334567899998875
No 290
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.35 E-value=2.8e-06 Score=55.05 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=56.5
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCCCC-CH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKNSM-SP 98 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~-~~ 98 (126)
++..+.+.||||.- ..+.. ..+.+|.+++++|......... .. +...+.. .+.| ++++.||+|+.+.. ..
T Consensus 81 ~~~~i~~vDtPg~~--~~~l~-~ak~aDvVllviDa~~~~~~~~-~~-i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~ 152 (225)
T cd01882 81 KKRRLTFIECPNDI--NAMID-IAKVADLVLLLIDASFGFEMET-FE-FLNILQV---HGFPRVMGVLTHLDLFKKNKTL 152 (225)
T ss_pred CCceEEEEeCCchH--HHHHH-HHHhcCEEEEEEecCcCCCHHH-HH-HHHHHHH---cCCCeEEEEEeccccCCcHHHH
Confidence 67889999999863 33333 3688999999999875433222 22 2233332 3466 45599999986421 12
Q ss_pred HHHHhhcCcCcc--cCCceEEEEeeeeeC
Q psy6566 99 VEISNLLDLTSI--KKQQWHIQSCCALTG 125 (126)
Q Consensus 99 ~~v~~~~~~~~~--~~~~~~~~~~Sa~~~ 125 (126)
.++...+...+. .....+++.+||++.
T Consensus 153 ~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 153 RKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 222222211111 112357999998864
No 291
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.35 E-value=8e-06 Score=59.60 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=70.4
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcch------HHHHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSL------RAAWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
.|++-....+..++-.+++.|+||--.. +...+.|+ ..+|.++-|+|+++.+ ....+..++++. +
T Consensus 36 vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---RnLyltlQLlE~----g 108 (653)
T COG0370 36 VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---RNLYLTLQLLEL----G 108 (653)
T ss_pred eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---HHHHHHHHHHHc----C
Confidence 4555555666678888999999995332 23344444 3679999999998743 444455666654 6
Q ss_pred CeEEEEEecCCCCCC----CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNS----MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+|++++.|.+|.... ++.+...+ ..+++++.+||++|+
T Consensus 109 ~p~ilaLNm~D~A~~~Gi~ID~~~L~~--------~LGvPVv~tvA~~g~ 150 (653)
T COG0370 109 IPMILALNMIDEAKKRGIRIDIEKLSK--------LLGVPVVPTVAKRGE 150 (653)
T ss_pred CCeEEEeccHhhHHhcCCcccHHHHHH--------HhCCCEEEEEeecCC
Confidence 899999999997653 22233333 346789999999874
No 292
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.30 E-value=1.3e-06 Score=55.36 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=40.4
Q ss_pred EEEEEEEcCCCcchHH-----HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 23 IHFIMWDLGGQQSLRA-----AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~-----~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
..+.+|||+|...... +....+..+|.++++.+. .+.+....+.+.++. .+.|+++|+||+|+.
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~ 120 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRD 120 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccch
Confidence 4689999999754322 222236778988887432 233333334344443 257999999999984
No 293
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.26 E-value=2.3e-05 Score=49.47 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=45.0
Q ss_pred EEEEEcCC----------CcchHHHHHhhcc---CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 25 FIMWDLGG----------QQSLRAAWSTYYT---NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 25 ~~i~Dt~G----------~~~~~~~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
+.+.|.|| ++.+..+...|++ .-.+++.++|+-.+.. .......+.+.. .++|+++++||+|
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~D 146 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKAD 146 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccc
Confidence 88999999 4555666677765 3567888889754432 222223334444 5799999999999
Q ss_pred CCCC
Q psy6566 92 IKNS 95 (126)
Q Consensus 92 ~~~~ 95 (126)
..+.
T Consensus 147 Ki~~ 150 (200)
T COG0218 147 KLKK 150 (200)
T ss_pred cCCh
Confidence 8763
No 294
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.25 E-value=3.2e-06 Score=51.60 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=41.2
Q ss_pred cEEEEEEECCCcccHHHHHHHHH-HHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 48 EFVILVIDSTDRERISLTKEELY-KMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 48 ~~~l~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|.+++|+|+.++.+.... ++. ..+.. .+.|++++.||+|+... +++..... .+.......++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~-~~~~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLA-YLRHSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHH-HHHhhCCceEEEEeccCCc
Confidence 679999999877544322 232 23333 46899999999999643 22211110 0111123467889999873
No 295
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.17 E-value=7.8e-06 Score=41.23 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=28.3
Q ss_pred cCCcEEEEEEECCCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 45 TNTEFVILVIDSTDR--ERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 45 ~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
+-.+.++|++|.++. -+.++...+++++... .++.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 347899999999975 3667666666666443 25899999999998
No 296
>KOG1423|consensus
Probab=98.16 E-value=1.3e-05 Score=53.76 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=46.0
Q ss_pred EEECCEEEEEEEcCCCcchHH------------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 18 VIWKNIHFIMWDLGGQQSLRA------------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 18 ~~~~~~~~~i~Dt~G~~~~~~------------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
+.-+.+++.++||||.-.-.. .....+..||.++.|+|+++....-.-+ +...++.. ..+|-++
T Consensus 115 ~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y--s~ips~l 190 (379)
T KOG1423|consen 115 ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY--SKIPSIL 190 (379)
T ss_pred EecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH--hcCCcee
Confidence 334889999999999422111 1233477899999999998531111110 11122221 5789999
Q ss_pred EEecCCCCCC
Q psy6566 86 YANKQDIKNS 95 (126)
Q Consensus 86 v~nK~D~~~~ 95 (126)
+.||.|+...
T Consensus 191 vmnkid~~k~ 200 (379)
T KOG1423|consen 191 VMNKIDKLKQ 200 (379)
T ss_pred eccchhcchh
Confidence 9999997654
No 297
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.15 E-value=3.5e-06 Score=52.29 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=44.8
Q ss_pred HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEE
Q psy6566 38 AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHI 117 (126)
Q Consensus 38 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~ 117 (126)
......++.||.+++|+|+.++...... . +...+ .+.|++++.||+|+..........+.+. .....+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeE
Confidence 3445568899999999999765432211 1 22221 3578999999999964311111111111 112357
Q ss_pred EEeeeeeC
Q psy6566 118 QSCCALTG 125 (126)
Q Consensus 118 ~~~Sa~~~ 125 (126)
+.+||+++
T Consensus 79 i~iSa~~~ 86 (171)
T cd01856 79 LFVNAKSG 86 (171)
T ss_pred EEEECCCc
Confidence 88999876
No 298
>KOG0468|consensus
Probab=98.13 E-value=5.2e-06 Score=60.65 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=53.3
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
+...+++.||||+-.|....-..++.+|++++++|+.+--.+. ....+++..+ .+.|+++|+||.|+.
T Consensus 195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHHH
Confidence 4567899999999999988888899999999999988754333 2334555554 468999999999953
No 299
>KOG1490|consensus
Probab=98.12 E-value=2.7e-06 Score=60.23 Aligned_cols=110 Identities=12% Similarity=0.063 Sum_probs=65.3
Q ss_pred ceEEEEEECCEEEEEEEcCCCcch----HHHHHh-----hccCCcEEEEEEECCCc--ccHHHHHHHHHHHhCCCCCCCC
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQQSL----RAAWST-----YYTNTEFVILVIDSTDR--ERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~~~~----~~~~~~-----~~~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.....+..+-..+++.||||.-.- +...+. ..+--.+|+|+.|+++. -+.++..+++..+-- -..+.
T Consensus 205 L~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK 282 (620)
T KOG1490|consen 205 LLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANK 282 (620)
T ss_pred hhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCC
Confidence 444444456677889999995221 111111 11223568999999875 466666666655532 23689
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeee
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALT 124 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 124 (126)
|+++|+||+|+.......+-.+.+-.......+++++++|..+
T Consensus 283 ~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ 325 (620)
T KOG1490|consen 283 VTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQ 325 (620)
T ss_pred ceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccc
Confidence 9999999999876543333222222223344557788888654
No 300
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.10 E-value=4e-05 Score=51.79 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=36.5
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCCccc
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTDRER 61 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~~~~ 61 (126)
|......-+..++..+|+.|+||.-.- ........++||.+++|+|+.....
T Consensus 97 Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 97 TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPH 155 (365)
T ss_pred ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChh
Confidence 333334446669999999999984221 2334556899999999999986544
No 301
>KOG1191|consensus
Probab=98.10 E-value=6.9e-05 Score=53.08 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=54.5
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchH-----H----HHHhhccCCcEEEEEEECCC--cccHHHHHHHHHHHhC---
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR-----A----AWSTYYTNTEFVILVIDSTD--RERISLTKEELYKMLN--- 74 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~-----~----~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~~~~~--- 74 (126)
+|-+.-.-.+++++.++.+.||+|...-. . ......+.+|.+++|+|+.. -++-..+...+...-.
T Consensus 302 TTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~ 381 (531)
T KOG1191|consen 302 TTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLV 381 (531)
T ss_pred cchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceE
Confidence 44444455677899999999999976611 1 23344778999999999833 2222222221222111
Q ss_pred --CCCCCCCeEEEEEecCCCCCC
Q psy6566 75 --HEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 75 --~~~~~~~piilv~nK~D~~~~ 95 (126)
.+.+...|++++.||+|+...
T Consensus 382 ~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 382 VIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred EEeccccccceEEEechhhccCc
Confidence 122345799999999998764
No 302
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.04 E-value=0.00016 Score=45.78 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=52.7
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchH-------H-H---HHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR-------A-A---WSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHE 76 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~-~---~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~ 76 (126)
.|..+......+++..+.++||||..... . + +.....++|++++|+++.+.. ....+.+++.+.+...
T Consensus 35 ~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~ 114 (196)
T cd01852 35 VTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK 114 (196)
T ss_pred cccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH
Confidence 45556666677789999999999964331 1 1 122246789999999987621 2222333343333321
Q ss_pred CCCCCeEEEEEecCCCCCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~ 95 (126)
.-.+++++.|+.|....
T Consensus 115 --~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 115 --VLDHTIVLFTRGDDLEG 131 (196)
T ss_pred --hHhcEEEEEECccccCC
Confidence 12578899999996553
No 303
>KOG1144|consensus
Probab=98.02 E-value=1.6e-05 Score=58.86 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=50.0
Q ss_pred EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC---CcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST---DRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
-+.++||||++.|..++.+.-.-||.+|+|+|+. ++.+.+.+. +++. .+.|+|+.+||+|..
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~---rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM---RKTPFIVALNKIDRL 605 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh---cCCCeEEeehhhhhh
Confidence 3779999999999999998888999999999986 355555543 2333 568999999999954
No 304
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.01 E-value=1.8e-05 Score=52.80 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEE
Q psy6566 39 AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQ 118 (126)
Q Consensus 39 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~ 118 (126)
.....++.+|.+++|+|+..+.+.+.. .+...+ .+.|+++|.||+|+.+..........+. ..+..++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi 81 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-----EKGIKAL 81 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH-----HcCCeEE
Confidence 344568899999999998765433221 233333 2579999999999964311112211221 1234678
Q ss_pred EeeeeeC
Q psy6566 119 SCCALTG 125 (126)
Q Consensus 119 ~~Sa~~~ 125 (126)
.+||+++
T Consensus 82 ~iSa~~~ 88 (276)
T TIGR03596 82 AINAKKG 88 (276)
T ss_pred EEECCCc
Confidence 8999876
No 305
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.89 E-value=4.3e-06 Score=48.66 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 37 RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 37 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
......+.+.++.++.+++.+..++++.. |...++... ..+.|.++++||.|+..
T Consensus 37 ~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 37 DVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEE 91 (124)
T ss_pred hhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHh
Confidence 33445678899999999999988888665 444443332 25788999999999843
No 306
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.87 E-value=3.7e-05 Score=51.61 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEE
Q psy6566 40 WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQS 119 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 119 (126)
....++.+|.+++|+|+..+.+.+. ..+...+ .+.|+++|.||+|+............+. ..+.+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEE
Confidence 3456889999999999876543222 1233333 2579999999999864311112222211 11346788
Q ss_pred eeeeeC
Q psy6566 120 CCALTG 125 (126)
Q Consensus 120 ~Sa~~~ 125 (126)
+||+++
T Consensus 86 vSa~~~ 91 (287)
T PRK09563 86 INAKKG 91 (287)
T ss_pred EECCCc
Confidence 898876
No 307
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=2.8e-05 Score=52.54 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=60.8
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC----CH
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM----SP 98 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~ 98 (126)
..+.|.|.||+|-.-....+-..--|+.++|++++++-.--+.++++..+ +-- .-..++++.||+|+.... +.
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHH
Confidence 35789999999876543333233358999999999865444444444333 221 345799999999997631 12
Q ss_pred HHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 99 VEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 99 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+++.+...-..+ .+.+++.+||..+
T Consensus 163 ~qIk~FvkGt~A--e~aPIIPiSA~~~ 187 (415)
T COG5257 163 EQIKEFVKGTVA--ENAPIIPISAQHK 187 (415)
T ss_pred HHHHHHhccccc--CCCceeeehhhhc
Confidence 233333332322 3457899998754
No 308
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.85 E-value=0.00089 Score=43.91 Aligned_cols=71 Identities=10% Similarity=0.121 Sum_probs=45.5
Q ss_pred CCEEEEEEEcCCCcc-------------hHHHHHhhccC-CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 21 KNIHFIMWDLGGQQS-------------LRAAWSTYYTN-TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~-~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
....+.+.||||... ...+...|++. .+.+++|+|+...-.-.+..+....+ .. .+.|+++|
T Consensus 123 ~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d~---~~~rti~V 198 (240)
T smart00053 123 HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-DP---QGERTIGV 198 (240)
T ss_pred CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-HH---cCCcEEEE
Confidence 557899999999742 22356677874 56899999875422222222222222 22 46899999
Q ss_pred EecCCCCCC
Q psy6566 87 ANKQDIKNS 95 (126)
Q Consensus 87 ~nK~D~~~~ 95 (126)
.||.|....
T Consensus 199 iTK~D~~~~ 207 (240)
T smart00053 199 ITKLDLMDE 207 (240)
T ss_pred EECCCCCCc
Confidence 999998763
No 309
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.84 E-value=1.1e-05 Score=52.77 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=36.5
Q ss_pred EEEEEEcCCCcchHHHHHhhc--------cCCcEEEEEEECCCccc---HHHHH-HHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYY--------TNTEFVILVIDSTDRER---ISLTK-EELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~l~v~d~~~~~~---~~~~~-~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
.+.++|||||.++-..|...- ...-++++++|+....+ +-... .-..-+.+ .+.|.+.+.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 688999999988877665443 45668999999764433 32221 11111221 3689999999999
Q ss_pred CCC
Q psy6566 92 IKN 94 (126)
Q Consensus 92 ~~~ 94 (126)
+.+
T Consensus 168 l~~ 170 (238)
T PF03029_consen 168 LLS 170 (238)
T ss_dssp GS-
T ss_pred ccc
Confidence 976
No 310
>PRK13796 GTPase YqeH; Provisional
Probab=97.83 E-value=4.6e-05 Score=52.86 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=45.3
Q ss_pred cchHHHHHhhccCCc-EEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCccc
Q psy6566 34 QSLRAAWSTYYTNTE-FVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIK 111 (126)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~ 111 (126)
+.|...... +..++ .+++|+|+.+... .....+..+. .+.|+++|+||+|+... ...+.+..... ...+
T Consensus 57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k 127 (365)
T PRK13796 57 DDFLKLLNG-IGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAK 127 (365)
T ss_pred HHHHHHHHh-hcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHH
Confidence 345554444 44444 8999999877431 1122233322 35789999999999642 22222222111 1111
Q ss_pred CCce---EEEEeeeeeCC
Q psy6566 112 KQQW---HIQSCCALTGE 126 (126)
Q Consensus 112 ~~~~---~~~~~Sa~~~~ 126 (126)
..++ .++.+||++|.
T Consensus 128 ~~g~~~~~v~~vSAk~g~ 145 (365)
T PRK13796 128 ELGLRPVDVVLISAQKGH 145 (365)
T ss_pred hcCCCcCcEEEEECCCCC
Confidence 2222 57899999863
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.77 E-value=0.00012 Score=44.92 Aligned_cols=66 Identities=23% Similarity=0.245 Sum_probs=44.6
Q ss_pred CCEEEEEEEcCCCcc----hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 21 KNIHFIMWDLGGQQS----LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~----~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
....+.++||||... ...++..+++.+|++++|.+++..-+-.+... +.+.... ....+++|.||.
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence 345689999999633 22567778899999999999987544444433 4444443 234488899984
No 312
>PRK01889 GTPase RsgA; Reviewed
Probab=97.76 E-value=0.00018 Score=49.84 Aligned_cols=74 Identities=19% Similarity=0.128 Sum_probs=44.3
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeee
Q psy6566 44 YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCAL 123 (126)
Q Consensus 44 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 123 (126)
..++|.+++|+++...-....+..++..+ .. .++|.++++||+||.+. ..+........ ..+++++.+||+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 56789999999986333333333333333 22 46777999999999753 11111111111 335688999998
Q ss_pred eCC
Q psy6566 124 TGE 126 (126)
Q Consensus 124 ~~~ 126 (126)
+|.
T Consensus 181 ~g~ 183 (356)
T PRK01889 181 DGE 183 (356)
T ss_pred CCc
Confidence 763
No 313
>KOG1424|consensus
Probab=97.71 E-value=7.7e-05 Score=53.13 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=54.6
Q ss_pred hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce
Q psy6566 36 LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW 115 (126)
Q Consensus 36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~ 115 (126)
++.+|+ .++..|.||.++|+-++--|.... +..+..... +....+++.||.||..+......++++. .+++
T Consensus 165 WRQLWR-VlErSDivvqIVDARnPllfr~~d--Le~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni 235 (562)
T KOG1424|consen 165 WRQLWR-VLERSDIVVQIVDARNPLLFRSPD--LEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNI 235 (562)
T ss_pred HHHHHH-HHhhcceEEEEeecCCccccCChh--HHHHHhccc-cccceEEEEehhhcCCHHHHHHHHHHHH-----hcCc
Confidence 445565 378899999999998875544332 344444322 4466789999999988655555666665 4457
Q ss_pred EEEEeeeee
Q psy6566 116 HIQSCCALT 124 (126)
Q Consensus 116 ~~~~~Sa~~ 124 (126)
+++..||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 888888864
No 314
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00028 Score=47.41 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=52.7
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCC-eEEE
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKA-AVLI 85 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~-piil 85 (126)
||...+-.++..+..+...|+||+..|-+..-.-..+.|+.|+|+.+++ |.+.+.+ +-... -+. -+++
T Consensus 62 TIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-------Llarq-vGvp~ivv 133 (394)
T COG0050 62 TINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------LLARQ-VGVPYIVV 133 (394)
T ss_pred eeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-------hhhhh-cCCcEEEE
Confidence 3333344444488999999999999887765555667899999998886 3333322 11111 244 5888
Q ss_pred EEecCCCCCC
Q psy6566 86 YANKQDIKNS 95 (126)
Q Consensus 86 v~nK~D~~~~ 95 (126)
+.||+|+...
T Consensus 134 flnK~Dmvdd 143 (394)
T COG0050 134 FLNKVDMVDD 143 (394)
T ss_pred EEecccccCc
Confidence 9999999763
No 315
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.69 E-value=0.00017 Score=49.37 Aligned_cols=94 Identities=24% Similarity=0.238 Sum_probs=53.6
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHH-
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPV- 99 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~- 99 (126)
.+..+.+.||+|...-... ....+|.++++.+....+...... ...++ +.-++|+||+|+.+.....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHH
Confidence 5788999999998643322 456799999997633333322221 11222 2338999999987532222
Q ss_pred ---HHHhhcCcCccc--CCceEEEEeeeeeCC
Q psy6566 100 ---EISNLLDLTSIK--KQQWHIQSCCALTGE 126 (126)
Q Consensus 100 ---~v~~~~~~~~~~--~~~~~~~~~Sa~~~~ 126 (126)
++...+...... ....+++.+||++|+
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~ 246 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGE 246 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCC
Confidence 222222211101 122479999999874
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.68 E-value=0.00029 Score=47.62 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=53.3
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
.+..+.|.||+|.-... ......+|.++++.+. .+.+++..+...+ ..+|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 57889999999964222 2246668888887543 3334443333222 3567799999999976432111
Q ss_pred HHhhc----CcCccc--CCceEEEEeeeeeCC
Q psy6566 101 ISNLL----DLTSIK--KQQWHIQSCCALTGE 126 (126)
Q Consensus 101 v~~~~----~~~~~~--~~~~~~~~~Sa~~~~ 126 (126)
....+ .....+ ....+++.+||++|+
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~ 224 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGR 224 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCC
Confidence 11111 110011 112358999999874
No 317
>KOG0465|consensus
Probab=97.59 E-value=0.00022 Score=51.90 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=58.4
Q ss_pred EEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 15 VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 15 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
...+.+.+..+.++||||+-.|.-.....++-.|++++++|....- -......|+++.+. ++|.+...||+|..+
T Consensus 96 At~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~ry----~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 96 ATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKRY----NVPRICFINKMDRMG 170 (721)
T ss_pred eeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHhc----CCCeEEEEehhhhcC
Confidence 3445558889999999999999888888899999999999876431 11233446666443 689999999999887
Q ss_pred CCC
Q psy6566 95 SMS 97 (126)
Q Consensus 95 ~~~ 97 (126)
...
T Consensus 171 a~~ 173 (721)
T KOG0465|consen 171 ASP 173 (721)
T ss_pred CCh
Confidence 543
No 318
>KOG0467|consensus
Probab=97.58 E-value=0.00013 Score=54.27 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=56.5
Q ss_pred cCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 7 TSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 7 ~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+-|-|+..+.-.+ ++..+.++|+||+-.|........+-+|+.+.++|+.+---.+ ...+++..+..+..
T Consensus 52 deq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~q-----t~~vlrq~~~~~~~ 126 (887)
T KOG0467|consen 52 DEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQ-----TYAVLRQAWIEGLK 126 (887)
T ss_pred hhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchh-----HHHHHHHHHHccCc
Confidence 34456666554333 8899999999999999999998889999999999987632111 11112221224566
Q ss_pred EEEEEecCC
Q psy6566 83 VLIYANKQD 91 (126)
Q Consensus 83 iilv~nK~D 91 (126)
.+++.||+|
T Consensus 127 ~~lvinkid 135 (887)
T KOG0467|consen 127 PILVINKID 135 (887)
T ss_pred eEEEEehhh
Confidence 788999999
No 319
>KOG0461|consensus
Probab=97.55 E-value=0.00072 Score=46.49 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=55.6
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHH-HHHHhCCCCCCCCeEEEEEecCCCCCCCC--
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE-LYKMLNHEDLSKAAVLIYANKQDIKNSMS-- 97 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~piilv~nK~D~~~~~~-- 97 (126)
+..++.+.|+||+...-...-.-..-.|..++|+|+..-..-+.+.-+ +-++ .....++|.||+|...+..
T Consensus 68 e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ 141 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRA 141 (522)
T ss_pred ccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhh
Confidence 446789999999966544333333446889999998753222211111 2222 2346788889998765421
Q ss_pred --HHHHHhhcCc---CcccCCceEEEEeeeeeC
Q psy6566 98 --PVEISNLLDL---TSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 98 --~~~v~~~~~~---~~~~~~~~~~~~~Sa~~~ 125 (126)
.++....+.. +..-..+.+++++||+.|
T Consensus 142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADG 174 (522)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCC
Confidence 1222221111 111233478999999987
No 320
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.51 E-value=0.00042 Score=46.00 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=50.5
Q ss_pred CCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
++-.+.+||+||.+. ++.....++...|.++.+.+..++.---+. +.+..+.... -+.+++++.|-+|..
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~--~~~~~i~~VtQ~D~a 161 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG--LDKRVLFVVTQADRA 161 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhc--cCceeEEEEehhhhh
Confidence 667899999999765 555666778899999999998876422222 2344443332 358999999999975
Q ss_pred C
Q psy6566 94 N 94 (126)
Q Consensus 94 ~ 94 (126)
.
T Consensus 162 ~ 162 (296)
T COG3596 162 E 162 (296)
T ss_pred c
Confidence 4
No 321
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.49 E-value=0.0016 Score=45.36 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=47.2
Q ss_pred CEEEEEEEcCCCcchHH--HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRA--AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM 96 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 96 (126)
+.-+.+.||.|+|.+-. ++...-.+.|-.++++.+++--+. -.++++--+ .. ...|++++.+|+|+..+.
T Consensus 200 DklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~-~a---~~lPviVvvTK~D~~~dd 271 (527)
T COG5258 200 DKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIA-LA---MELPVIVVVTKIDMVPDD 271 (527)
T ss_pred ccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhh-hh---hcCCEEEEEEecccCcHH
Confidence 35688999999999854 344445678999999987763221 112222222 22 478999999999997653
No 322
>KOG3887|consensus
Probab=97.48 E-value=0.00085 Score=43.97 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=46.9
Q ss_pred EEEEEEEcCCCcchHH---HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-CCCCCeEEEEEecCCCCC
Q psy6566 23 IHFIMWDLGGQQSLRA---AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-DLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~ 94 (126)
+.+++||.|||-.+-. -....++++.+.+||+|+.+. -.+.+..+..-+.+.. -.+++.+=+...|.|-..
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 5699999999966532 245568999999999998653 2233322222222221 127899999999999554
No 323
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.44 E-value=0.00042 Score=44.15 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=49.9
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE--EEEEecCCCCCC--CC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV--LIYANKQDIKNS--MS 97 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi--ilv~nK~D~~~~--~~ 97 (126)
+....+.++.|...-....+ . -++.++.|+|+.+.++... + .. ..+.. ++++||+|+... ..
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~-~~--------~qi~~ad~~~~~k~d~~~~~~~~ 156 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--K-GG--------PGITRSDLLVINKIDLAPMVGAD 156 (199)
T ss_pred CCCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--h-hH--------hHhhhccEEEEEhhhcccccccc
Confidence 45677889988422222222 1 2688999999876444211 1 00 12333 889999999752 22
Q ss_pred HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 98 PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 98 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.+.+..... ....+++++||++|+
T Consensus 157 ~~~~~~~~~~~---~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 157 LGVMERDAKKM---RGEKPFIFTNLKTKE 182 (199)
T ss_pred HHHHHHHHHHh---CCCCCEEEEECCCCC
Confidence 23322222211 224679999999985
No 324
>KOG0464|consensus
Probab=97.42 E-value=3.7e-05 Score=53.77 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=55.2
Q ss_pred EEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 18 VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 18 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+.+++..+.++||||+-.|+-..+.+++--|+++.|||.+-.-..+.+ ..|.+..+ -++|-..+.||+|...
T Consensus 97 fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtl-tvwrqadk----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 97 FDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK----FKIPAHCFINKMDKLA 168 (753)
T ss_pred cccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc----cCCchhhhhhhhhhhh
Confidence 444999999999999999999999999999999999998743222222 23433322 4789999999999765
No 325
>KOG1532|consensus
Probab=97.37 E-value=0.0017 Score=43.34 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=45.6
Q ss_pred CEEEEEEEcCCCcc-hH-----HHH-Hhh-ccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 22 NIHFIMWDLGGQQS-LR-----AAW-STY-YTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~-~~-----~~~-~~~-~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
.....+.|||||-. |. ... +.. -.....++|++|..+ +.+|-....+-..++.. ...|++++.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 35688999999843 21 111 111 123567899998654 45565555444445544 578999999999
Q ss_pred CCCCC
Q psy6566 91 DIKNS 95 (126)
Q Consensus 91 D~~~~ 95 (126)
|+.+.
T Consensus 192 Dv~d~ 196 (366)
T KOG1532|consen 192 DVSDS 196 (366)
T ss_pred ccccc
Confidence 99874
No 326
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.35 E-value=0.0047 Score=42.01 Aligned_cols=73 Identities=5% Similarity=0.036 Sum_probs=42.5
Q ss_pred EECCEEEEEEEcCCCcchHHHH-------Hhhc--cCCcEEEEEEECCC--cccH-HHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 19 IWKNIHFIMWDLGGQQSLRAAW-------STYY--TNTEFVILVIDSTD--RERI-SLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 19 ~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~~~~l~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~piilv 86 (126)
..++..+.++||||........ ..++ .+.|+++||..++. .... ..+.+.+....... .-.+.+++
T Consensus 82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVV 159 (313)
T TIGR00991 82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVV 159 (313)
T ss_pred EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEE
Confidence 3488999999999976543221 1112 26899999965442 2211 22223333333221 12468999
Q ss_pred EecCCCC
Q psy6566 87 ANKQDIK 93 (126)
Q Consensus 87 ~nK~D~~ 93 (126)
.++.|..
T Consensus 160 fTh~d~~ 166 (313)
T TIGR00991 160 LTHAQFS 166 (313)
T ss_pred EECCccC
Confidence 9999965
No 327
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.29 E-value=0.0048 Score=40.77 Aligned_cols=81 Identities=6% Similarity=-0.045 Sum_probs=46.7
Q ss_pred CceEEEEEECCEEEEEEEcCCCcchHH---H-------HHhhcc--CCcEEEEEEECCCcc-cHH--HHHHHHHHHhCCC
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQSLRA---A-------WSTYYT--NTEFVILVIDSTDRE-RIS--LTKEELYKMLNHE 76 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~-------~~~~~~--~~~~~l~v~d~~~~~-~~~--~~~~~~~~~~~~~ 76 (126)
.........++..+.+|||||-..... . ...+++ ..++++|+..++... ... .+.+.+...+...
T Consensus 68 ~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~ 147 (249)
T cd01853 68 RVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS 147 (249)
T ss_pred EEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh
Confidence 344444555888999999999754421 1 122333 578888887655321 122 2333333333221
Q ss_pred CCCCCeEEEEEecCCCCC
Q psy6566 77 DLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~ 94 (126)
--.++++|.||+|...
T Consensus 148 --i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 148 --IWRNAIVVLTHAASSP 163 (249)
T ss_pred --hHhCEEEEEeCCccCC
Confidence 1246999999999754
No 328
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00082 Score=39.56 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=52.3
Q ss_pred EEEcCCCcchHHHHH----hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566 27 MWDLGGQQSLRAAWS----TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS 102 (126)
Q Consensus 27 i~Dt~G~~~~~~~~~----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~ 102 (126)
..||||.---...|. .....++.+++|-.++++++.-.. -+.. ....|+|-+.+|.||.+....+.+.
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p------~f~~--~~~k~vIgvVTK~DLaed~dI~~~~ 112 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP------GFLD--IGVKKVIGVVTKADLAEDADISLVK 112 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc------cccc--ccccceEEEEecccccchHhHHHHH
Confidence 568998533333332 235678999999988887543211 1111 1356799999999998654444444
Q ss_pred hhcCcCcccCCceEEEEeeeeeC
Q psy6566 103 NLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
..+.+. ..-++|++|+.++
T Consensus 113 ~~L~ea----Ga~~IF~~s~~d~ 131 (148)
T COG4917 113 RWLREA----GAEPIFETSAVDN 131 (148)
T ss_pred HHHHHc----CCcceEEEeccCc
Confidence 333221 1226889988754
No 329
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.14 E-value=0.00065 Score=42.34 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=27.9
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH--hCCCCCCCCeEEEEEecCCCCCC
Q psy6566 48 EFVILVIDSTDRERISLTKEELYKM--LNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 48 ~~~l~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~piilv~nK~D~~~~ 95 (126)
|.+++|+|+..+.+-.. ..+.+. +.. .+.|++++.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~---~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAG---GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhcc---CCCCEEEEEehhhcCCH
Confidence 68999999877532211 112223 222 45899999999999653
No 330
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.08 E-value=0.0015 Score=41.82 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=47.3
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC--HH
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS--PV 99 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~ 99 (126)
+..+.+.+|.|.-.... .+.-..+..+.++|..+.+... ... . .....|.++++||+|+.+... ..
T Consensus 102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~-~------~~~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKY-P------GMFKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhh-H------hHHhhCCEEEEEHHHccccchhhHH
Confidence 44677888888211110 1112345556778876543211 110 1 112457799999999975321 22
Q ss_pred HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 100 EISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++...... .....+++++||++|.
T Consensus 170 ~~~~~l~~---~~~~~~i~~~Sa~~g~ 193 (207)
T TIGR00073 170 KMKADAKK---INPEAEIILMSLKTGE 193 (207)
T ss_pred HHHHHHHH---hCCCCCEEEEECCCCC
Confidence 22222111 1134679999999874
No 331
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.05 E-value=0.0028 Score=42.77 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=45.6
Q ss_pred ccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeee
Q psy6566 44 YTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122 (126)
Q Consensus 44 ~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 122 (126)
+.+.+-.++++.+.+|+ +...+.+++-.+ .. .++..+++.||+|+..+..... ...+......+++.+.+||
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~ 149 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA-EA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSA 149 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH-HH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecC
Confidence 45577788888888876 333333333222 22 5777788899999987532221 1111222356788999999
Q ss_pred eeC
Q psy6566 123 LTG 125 (126)
Q Consensus 123 ~~~ 125 (126)
+++
T Consensus 150 ~~~ 152 (301)
T COG1162 150 KNG 152 (301)
T ss_pred cCc
Confidence 876
No 332
>KOG0459|consensus
Probab=96.98 E-value=0.0012 Score=46.17 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=70.5
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
-.-|+++....+......+.+.|++|+..|-...-.-..+||.-++|+.+-.. ..|+.-.+-..+.+-.....-.-+
T Consensus 141 kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~l 220 (501)
T KOG0459|consen 141 KGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL 220 (501)
T ss_pred ccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceE
Confidence 34688888888999999999999999988866554456678888888764211 112211111222211111133468
Q ss_pred EEEEecCCCCCC-C---CHHHHHhhcC-----cCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNS-M---SPVEISNLLD-----LTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~-~---~~~~v~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++.||+|-+.. . ..++..+.+. ..+.-.....++.+|..+|.
T Consensus 221 Vv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~ 272 (501)
T KOG0459|consen 221 IVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGA 272 (501)
T ss_pred EEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeeccccccc
Confidence 889999997642 1 1122222211 11122235578888888773
No 333
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.79 E-value=0.021 Score=36.68 Aligned_cols=85 Identities=12% Similarity=-0.047 Sum_probs=47.4
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcch-------HHHHH----hhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSL-------RAAWS----TYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHED 77 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~----~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~ 77 (126)
|..+......+++..+.++||||-..- ..... ....+.|++++|+...+.. .-....+++..++....
T Consensus 36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~ 115 (212)
T PF04548_consen 36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI 115 (212)
T ss_dssp -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG
T ss_pred ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH
Confidence 555666667789999999999994221 11111 2245789999999987321 22233344555544332
Q ss_pred CCCCeEEEEEecCCCCCCC
Q psy6566 78 LSKAAVLIYANKQDIKNSM 96 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~ 96 (126)
+ .-++++.+..|.....
T Consensus 116 ~--k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 116 W--KHTIVVFTHADELEDD 132 (212)
T ss_dssp G--GGEEEEEEEGGGGTTT
T ss_pred H--hHhhHHhhhccccccc
Confidence 2 2477788888765543
No 334
>KOG1954|consensus
Probab=96.79 E-value=0.0061 Score=42.45 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=45.9
Q ss_pred EEEEEEcCCCcc-----------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 24 HFIMWDLGGQQS-----------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 24 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
++.+.||||.-. |....+.+...+|.++++||....+--.+....+..+.. ..-.+-+|.||.|.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADq 223 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQ 223 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccc
Confidence 478999999533 233345567899999999998876655555444444422 23467789999997
Q ss_pred CC
Q psy6566 93 KN 94 (126)
Q Consensus 93 ~~ 94 (126)
..
T Consensus 224 Vd 225 (532)
T KOG1954|consen 224 VD 225 (532)
T ss_pred cC
Confidence 65
No 335
>KOG0460|consensus
Probab=96.69 E-value=0.0071 Score=41.66 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=47.2
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
...++.=.|+||+..|-+..-.--..-|+.|+|+.+++-. ..+.++++.-..+. .-..++++.||.|+..
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVD 184 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccC
Confidence 5667778899999888766544455679999999988732 22333333222221 2346899999999974
No 336
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.64 E-value=0.011 Score=41.78 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=26.3
Q ss_pred EEEEEEEcCCC----cchHHHHHh---hccCCcEEEEEEECC
Q psy6566 23 IHFIMWDLGGQ----QSLRAAWST---YYTNTEFVILVIDST 57 (126)
Q Consensus 23 ~~~~i~Dt~G~----~~~~~~~~~---~~~~~~~~l~v~d~~ 57 (126)
..+++|||||. +..+.+-.. .++.+|++++|+|+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 67999999994 333333333 489999999999986
No 337
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.54 E-value=0.03 Score=34.80 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=46.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+...+.+.|||+.... .....+..+|.+++++..+ ..+...+...++.+ +. .+.|+.++.||.|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l-~~---~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELV-RH---FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHH-HH---cCCCEEEEEeCCCCCc
Confidence 4678999999976433 2334578899999999866 44666666655544 32 2467889999998754
No 338
>KOG2484|consensus
Probab=96.41 E-value=0.0078 Score=42.08 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=42.9
Q ss_pred hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH-HhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcC
Q psy6566 36 LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK-MLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLD 106 (126)
Q Consensus 36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~ 106 (126)
|.......++.+|+||.|+|+-+|.+-..-. .+. +++.. .+..+|+|+||+|+......+++..++.
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~--vE~~V~~~~--gnKkLILVLNK~DLVPrEv~e~Wl~YLr 203 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPE--VEEAVLQAH--GNKKLILVLNKIDLVPREVVEKWLVYLR 203 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChh--HHHHHHhcc--CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence 3344455678899999999998875433221 222 22232 4589999999999977434444554543
No 339
>KOG0705|consensus
Probab=96.40 E-value=0.0074 Score=43.97 Aligned_cols=118 Identities=14% Similarity=0.243 Sum_probs=70.0
Q ss_pred CCCcccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 2 NEVVHTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 2 ~~~~~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
|.+.+.+.+.|-.+ +.+.+ +...+.+.|-+|....+ |-..+|++||||.+.+.++|+.+..+...+......
T Consensus 53 gty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-----ft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r 127 (749)
T KOG0705|consen 53 GTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-----FCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNI 127 (749)
T ss_pred ceeccccCCcCccceeeEEeeccceEeeeecccCCchhh-----hhhhccceEEEEEeccccCHHHHHHHHhhccccccc
Confidence 34444455555333 33333 66678888888843332 566799999999999999999988776666555444
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCc-CcccCCceEEEEeeeeeC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDL-TSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~Sa~~~ 125 (126)
..+|+++++.+. .......+.+....+. .........+|+++|.+|
T Consensus 128 ~~i~l~lvgtqd-~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG 174 (749)
T KOG0705|consen 128 SDLPLILVGTQD-HISAKRPRVITDDRARQLSAQMKRCSYYETCATYG 174 (749)
T ss_pred ccchHHhhcCcc-hhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence 678888888773 3222111111111111 111233456788877665
No 340
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.37 E-value=0.0083 Score=41.13 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=50.6
Q ss_pred CCC-cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCc
Q psy6566 31 GGQ-QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTS 109 (126)
Q Consensus 31 ~G~-~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~ 109 (126)
+|+ ..+.......+..+|.++.|+|+-++.+...- .+..+.. +.|.++++||+|+........+.+.+...
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~- 89 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKKE- 89 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHhc-
Confidence 554 34455666778999999999999887644332 2444443 34559999999998743334444443322
Q ss_pred ccCCceEEEEeeeee
Q psy6566 110 IKKQQWHIQSCCALT 124 (126)
Q Consensus 110 ~~~~~~~~~~~Sa~~ 124 (126)
.+...+.+|++.
T Consensus 90 ---~~~~~~~v~~~~ 101 (322)
T COG1161 90 ---EGIKPIFVSAKS 101 (322)
T ss_pred ---CCCccEEEEeec
Confidence 133445555554
No 341
>KOG0448|consensus
Probab=96.29 E-value=0.035 Score=41.47 Aligned_cols=67 Identities=18% Similarity=0.433 Sum_probs=43.8
Q ss_pred EEEEEEcCCC---cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 24 HFIMWDLGGQ---QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 24 ~~~i~Dt~G~---~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
.+.+.|.||. .........+...+|.+|||..+-+ .+....+.+...... ....+.++.||.|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~---~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE---EKPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc---cCCcEEEEechhhhhcc
Confidence 5778899995 3445566778889999999987654 333333223222222 24567888889998654
No 342
>KOG1707|consensus
Probab=96.29 E-value=0.028 Score=41.20 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=51.4
Q ss_pred EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 15 VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 15 ~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
...+.+ +.-.+.+-|.+-. ....+-.. =..||.+.++||.+++.+|+-........... ...|+++++.|+|+
T Consensus 464 vn~v~~~g~~k~LiL~ei~~~-~~~~l~~k-e~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dl 538 (625)
T KOG1707|consen 464 VNSVEVKGQQKYLILREIGED-DQDFLTSK-EAACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADL 538 (625)
T ss_pred eeeeeeccccceEEEeecCcc-ccccccCc-cceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeecccc
Confidence 344444 3345666676644 11111111 17799999999999999999887765554333 67999999999999
Q ss_pred CCC
Q psy6566 93 KNS 95 (126)
Q Consensus 93 ~~~ 95 (126)
...
T Consensus 539 De~ 541 (625)
T KOG1707|consen 539 DEV 541 (625)
T ss_pred chh
Confidence 763
No 343
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.26 E-value=0.017 Score=37.79 Aligned_cols=65 Identities=14% Similarity=0.285 Sum_probs=44.1
Q ss_pred CCEEEEEEEc-CCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC-CeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDL-GGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK-AAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt-~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~piilv~nK~D~~ 93 (126)
+.-.+.+.|| ||.|-|. +...+++|.++.|+|.+- .++.-+.+ +.++.+. -+ .++.+|.||.|-.
T Consensus 132 ~~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence 3456778888 5766654 445789999999999764 34544433 4444333 24 6899999999854
No 344
>KOG0463|consensus
Probab=95.96 E-value=0.023 Score=39.83 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=41.7
Q ss_pred EEEEEEEcCCCcchHHHHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
..+.|+|.+|+|+|-+.--.- -+-.|..++|+-++-- -..-.++.+--.+. -.+|+.+|.+|+|++..
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa----L~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA----LHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh----hcCcEEEEEEeeccCcH
Confidence 357899999999986543222 2346777887765431 11112222322222 36899999999998874
No 345
>KOG0466|consensus
Probab=95.89 E-value=0.0039 Score=42.32 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=50.3
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHH---
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPV--- 99 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~--- 99 (126)
.++.|.|+||++..-.....-..--|+.++++..+++-.-.+..+++..+--. .-.-++++.||+|+..+....
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~e~~A~eq~ 201 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIKESQALEQH 201 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhhHHHHHHHH
Confidence 35789999999765432221122236777777766532222222222222111 224689999999997653221
Q ss_pred -HHHhhcCcCcccCCceEEEEeeee
Q psy6566 100 -EISNLLDLTSIKKQQWHIQSCCAL 123 (126)
Q Consensus 100 -~v~~~~~~~~~~~~~~~~~~~Sa~ 123 (126)
++.....-. ...+.+++.+||.
T Consensus 202 e~I~kFi~~t--~ae~aPiiPisAQ 224 (466)
T KOG0466|consen 202 EQIQKFIQGT--VAEGAPIIPISAQ 224 (466)
T ss_pred HHHHHHHhcc--ccCCCceeeehhh
Confidence 222222111 2235578888874
No 346
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=95.59 E-value=0.14 Score=36.68 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=47.6
Q ss_pred cCCccCceE---EEEEE-----CCEEEEEEEcCCCcc--------hHH-----------------H----HHhhcc-CCc
Q psy6566 7 TSPTIGSNV---EEVIW-----KNIHFIMWDLGGQQS--------LRA-----------------A----WSTYYT-NTE 48 (126)
Q Consensus 7 ~~pTi~~~~---~~~~~-----~~~~~~i~Dt~G~~~--------~~~-----------------~----~~~~~~-~~~ 48 (126)
+..|.+.-+ +.+.+ -..++.+.||+|-.. ... . -+..+. .++
T Consensus 67 tItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhst 146 (492)
T TIGR02836 67 TIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHST 146 (492)
T ss_pred CcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCc
Confidence 346666444 66666 236899999998211 111 0 122344 788
Q ss_pred EEEEEE-ECC----CcccHHHHH-HHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 49 FVILVI-DST----DRERISLTK-EELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 49 ~~l~v~-d~~----~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
..++|. |.+ .++...+.. .++.++ +. .++|++++.||+|-
T Consensus 147 IgivVtTDgsi~dI~Re~y~~aEe~~i~eL-k~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 147 IGVVVTTDGTITDIPREDYVEAEERVIEEL-KE---LNKPFIILLNSTHP 192 (492)
T ss_pred EEEEEEcCCCccccccccchHHHHHHHHHH-Hh---cCCCEEEEEECcCC
Confidence 888887 653 112233332 333433 33 47999999999994
No 347
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=95.42 E-value=0.021 Score=39.92 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=33.3
Q ss_pred EEEEEEEcCCCcchHHHHHhh-----ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTY-----YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~-----~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
-.+.+||.||...-.-....| +..-|.++++.+ +.|....-++...++. .+.|+.+|.+|+|.
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 359999999953322223323 556788887664 2344444445444444 57899999999995
No 348
>KOG3905|consensus
Probab=95.42 E-value=0.3 Score=33.91 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=40.0
Q ss_pred ccCCccCceEEEEEE------CCEEEEEEEcCCCcchHHHHHhhccC---C-cEEEEEEECCCcc-cHHHHHH
Q psy6566 6 HTSPTIGSNVEEVIW------KNIHFIMWDLGGQQSLRAAWSTYYTN---T-EFVILVIDSTDRE-RISLTKE 67 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~---~-~~~l~v~d~~~~~-~~~~~~~ 67 (126)
.+.+--|.....+.+ +..++.+|=..|......+..+.+.. + ..+|++.|++++. -++.+.+
T Consensus 77 ~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqk 149 (473)
T KOG3905|consen 77 TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQK 149 (473)
T ss_pred ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHH
Confidence 455555666666666 44678899988987766666555443 2 4577888999873 3333333
No 349
>KOG0410|consensus
Probab=95.14 E-value=0.023 Score=39.00 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=50.5
Q ss_pred ccCceEEEEEE-CCEEEEEEEcCCC---------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 10 TIGSNVEEVIW-KNIHFIMWDLGGQ---------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 10 Ti~~~~~~~~~-~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
|.+...+..++ .+..+-+-||-|= .-|+..... +..+|.++-|.|++.|+.-. .+.-....++..+.+
T Consensus 212 TLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee-VaeadlllHvvDiShP~ae~-q~e~Vl~vL~~igv~ 289 (410)
T KOG0410|consen 212 TLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE-VAEADLLLHVVDISHPNAEE-QRETVLHVLNQIGVP 289 (410)
T ss_pred eccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH-HhhcceEEEEeecCCccHHH-HHHHHHHHHHhcCCC
Confidence 33344444455 5677888899882 234444443 66799999999999886433 333344555554445
Q ss_pred CCe----EEEEEecCCCCC
Q psy6566 80 KAA----VLIYANKQDIKN 94 (126)
Q Consensus 80 ~~p----iilv~nK~D~~~ 94 (126)
..| ++=|-||.|...
T Consensus 290 ~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 290 SEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred cHHHHhHHHhhcccccccc
Confidence 455 444677777544
No 350
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.12 E-value=0.16 Score=30.32 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=42.7
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
..+.++|+++... ......+..+|.++++.+.+ ..++......++.+.+.. ...++.++.|+.+..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 5688999987533 23345688899999999865 445555444444432221 345778999998643
No 351
>KOG1143|consensus
Probab=95.09 E-value=0.095 Score=36.90 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=42.6
Q ss_pred EEEEEEEcCCCcchHHHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
..+.+.|.+|+.+|...--+-+. ..|..++|+.+..--.. ..++++--+ .. -++|++++.+|+|+...
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~-~A---L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLI-AA---LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHH-HH---hCCCeEEEEEeeccccc
Confidence 45889999999988764333332 25777777776542111 112222222 22 47999999999999864
No 352
>KOG0447|consensus
Probab=95.05 E-value=1 Score=33.65 Aligned_cols=94 Identities=17% Similarity=0.291 Sum_probs=57.8
Q ss_pred ccCceEEEEEECC---EEEEEEEcCCCc-------------chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHh
Q psy6566 10 TIGSNVEEVIWKN---IHFIMWDLGGQQ-------------SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73 (126)
Q Consensus 10 Ti~~~~~~~~~~~---~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~ 73 (126)
|+--..-.+.+++ -...+.|.||.- ..-.+..+|+.+.+++|+++.--..+ .-+.-.-.+.
T Consensus 396 TVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLV 472 (980)
T KOG0447|consen 396 TVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLV 472 (980)
T ss_pred ccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHH
Confidence 3333334455533 467789999842 23346788999999999998522222 2222233444
Q ss_pred CCCCCCCCeEEEEEecCCCCCC--CCHHHHHhhcC
Q psy6566 74 NHEDLSKAAVLIYANKQDIKNS--MSPVEISNLLD 106 (126)
Q Consensus 74 ~~~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~ 106 (126)
......+...|+|.+|.|+.+. .+++.+.+.+.
T Consensus 473 sq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 473 SQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred HhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 4545568899999999999763 34555555443
No 353
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.00 E-value=0.083 Score=35.51 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=33.0
Q ss_pred CCccCceEEEEEECCE-----------------EEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC
Q psy6566 8 SPTIGSNVEEVIWKNI-----------------HFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~-----------------~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
-+|++.+...+.+.+. .+.+.|+||... ........++.+|++++|+|..
T Consensus 30 ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 30 FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 3566666666666332 599999999432 2223334478899999999863
No 354
>KOG0469|consensus
Probab=94.81 E-value=0.076 Score=38.76 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=48.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
.+..+.++|.||+-.|.+..-..++-.|+.+.|+|..+---. +....+.+.+.. .+.-+++.||.|..
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhHH
Confidence 456788999999999999999999999999999997653111 011123333332 34447789999953
No 355
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.54 E-value=0.55 Score=32.92 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=57.9
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
....+.++|.| .........++.++|.+++|++.+ ..+.+..++.+..+-+.. .++.+..++.||.+.....+..+
T Consensus 216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~~~~~~~~~d 291 (366)
T COG4963 216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLR-PNDPKPILVLNRVGVPKRPEPSD 291 (366)
T ss_pred ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhC-CCCCCceEEeeecCCCCCCCHHH
Confidence 34568899999 344555677899999999999864 457777777666665543 36778899999998766444455
Q ss_pred HHhhcC
Q psy6566 101 ISNLLD 106 (126)
Q Consensus 101 v~~~~~ 106 (126)
+...++
T Consensus 292 l~~~~~ 297 (366)
T COG4963 292 LEEILG 297 (366)
T ss_pred HHHHhC
Confidence 554444
No 356
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.50 E-value=0.35 Score=27.50 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=40.4
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC-CCeEEEEEec
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS-KAAVLIYANK 89 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~piilv~nK 89 (126)
..+.+.|+++..... ....+..+|.++++.+.+ ..+...+...+..+.+.. .+ ...+.++.|+
T Consensus 43 ~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~~lVvNr 106 (106)
T cd03111 43 DDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLD-YSLPAKIELVLNR 106 (106)
T ss_pred CCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcC-CCCcCceEEEecC
Confidence 378999999875443 334678899999998754 456666665554443332 22 3466677775
No 357
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.38 E-value=0.18 Score=30.86 Aligned_cols=65 Identities=18% Similarity=0.098 Sum_probs=35.2
Q ss_pred CEEEEEEEcCCCcchHHHHHh--------hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWST--------YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
.....+.||+|-..-...... ..-..+.+++++|..+.....+....+..-++ ... +++.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~-----~ad-~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA-----FAD-RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH-----HCC-EEEEecccC
Confidence 456778999997544433322 12357889999997542211101111111111 222 668999996
No 358
>PTZ00258 GTP-binding protein; Provisional
Probab=94.29 E-value=0.4 Score=33.96 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=25.1
Q ss_pred EEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC
Q psy6566 23 IHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 23 ~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
.++.+.||||... ........++.+|++++|+|..
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4589999999532 2223334578899999999974
No 359
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=94.25 E-value=0.73 Score=35.09 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=42.9
Q ss_pred EEECCEEEEEEEcCCCcchH-------HH---HHhhcc--CCcEEEEEEECCCcccH-H--HHHHHHHHHhCCCCCCCCe
Q psy6566 18 VIWKNIHFIMWDLGGQQSLR-------AA---WSTYYT--NTEFVILVIDSTDRERI-S--LTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 18 ~~~~~~~~~i~Dt~G~~~~~-------~~---~~~~~~--~~~~~l~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~p 82 (126)
..+.+..+.++||||..... .+ ...+++ .+|++|+|..+...... + .+.+.+..++-... -.-
T Consensus 161 ~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~ 238 (763)
T TIGR00993 161 GLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFN 238 (763)
T ss_pred EEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcC
Confidence 34478899999999975421 11 222333 58999999876533221 1 12223333333221 135
Q ss_pred EEEEEecCCCCC
Q psy6566 83 VLIYANKQDIKN 94 (126)
Q Consensus 83 iilv~nK~D~~~ 94 (126)
+||+.++.|...
T Consensus 239 tIVVFThgD~lp 250 (763)
T TIGR00993 239 AIVTLTHAASAP 250 (763)
T ss_pred EEEEEeCCccCC
Confidence 788899998764
No 360
>KOG1486|consensus
Probab=94.08 E-value=0.2 Score=33.48 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=35.0
Q ss_pred EEEEECCEEEEEEEcCCCcchH-------HHHHhhccCCcEEEEEEECCCcccHHHH
Q psy6566 16 EEVIWKNIHFIMWDLGGQQSLR-------AAWSTYYTNTEFVILVIDSTDRERISLT 65 (126)
Q Consensus 16 ~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~~l~v~d~~~~~~~~~~ 65 (126)
..+.+++..+++.|.||.-.-. .+.-...+.||.+++|+|++..+.-+.+
T Consensus 102 Gvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~ 158 (364)
T KOG1486|consen 102 GVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREI 158 (364)
T ss_pred ceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHH
Confidence 3455699999999999853221 1233446789999999999876644433
No 361
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.89 E-value=0.37 Score=32.53 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=26.1
Q ss_pred CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 46 NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 46 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
..|+|+|+++.+...--......++++ + ...++|-|..|+|...
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-
T ss_pred CcceEEEEEcCCCccchHHHHHHHHHh-c----ccccEEeEEecccccC
Confidence 469999999976532111122334444 2 3578899999999765
No 362
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.85 E-value=0.71 Score=28.37 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=42.7
Q ss_pred EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+.++|+++..... ....+..+|.++++++... .++..+...+..+... ......++.|+.+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 69999999865443 3344678999999987653 4555555544443321 2345778999998654
No 363
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.69 E-value=0.021 Score=37.87 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC-HH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS-PV 99 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~ 99 (126)
-+..+.+..|.|.-+-... ...-+|.+++|.-..--+..+..+.-+. .+.=++|.||+|+..... ..
T Consensus 120 aG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGim---------EiaDi~vVNKaD~~gA~~~~~ 187 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIM---------EIADIFVVNKADRPGADRTVR 187 (266)
T ss_dssp TT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHH---------HH-SEEEEE--SHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhh---------hhccEEEEeCCChHHHHHHHH
Confidence 4677888888764332211 3556999999987654443332221111 234488999999655311 12
Q ss_pred HHHhhcCcCcc--cCCceEEEEeeeeeCC
Q psy6566 100 EISNLLDLTSI--KKQQWHIQSCCALTGE 126 (126)
Q Consensus 100 ~v~~~~~~~~~--~~~~~~~~~~Sa~~~~ 126 (126)
++...+..... ....-+++.+||.+|+
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~ 216 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGE 216 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTB
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCC
Confidence 23332222211 2234589999998763
No 364
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.49 E-value=0.45 Score=32.51 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=52.0
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPV 99 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~ 99 (126)
.+..+.|..|.|.-+-... ...-+|.++++.-.---+..+.++ .-++ .+-=+++.||.|..+. ....
T Consensus 142 aG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK---~Gim------EiaDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIK---AGIM------EIADIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHH---hhhh------hhhheeeEeccChhhHHHHHH
Confidence 6778889999875333221 244588888876432223333222 2232 2344889999997653 1122
Q ss_pred HHHhhcCcCc--c--cCCceEEEEeeeeeCC
Q psy6566 100 EISNLLDLTS--I--KKQQWHIQSCCALTGE 126 (126)
Q Consensus 100 ~v~~~~~~~~--~--~~~~~~~~~~Sa~~~~ 126 (126)
++...+.... . +...-+++.+||.+|+
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~ 240 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGE 240 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCC
Confidence 3333332221 2 2234479999999874
No 365
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=93.10 E-value=0.3 Score=39.37 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=43.2
Q ss_pred EEEEEEcCCCc--------chHHHHHhhc---------cCCcEEEEEEECCCcc-----c----HHHHHHHHHHHhCCCC
Q psy6566 24 HFIMWDLGGQQ--------SLRAAWSTYY---------TNTEFVILVIDSTDRE-----R----ISLTKEELYKMLNHED 77 (126)
Q Consensus 24 ~~~i~Dt~G~~--------~~~~~~~~~~---------~~~~~~l~v~d~~~~~-----~----~~~~~~~~~~~~~~~~ 77 (126)
...++||+|.- .....|..++ +-.+|+|+++|+.+.- . ...++..+.++.+.-.
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg 241 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG 241 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35589999932 2334455442 3589999999976431 1 1223333444433322
Q ss_pred CCCCeEEEEEecCCCCC
Q psy6566 78 LSKAAVLIYANKQDIKN 94 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~ 94 (126)
-..|+.++.+|+|+..
T Consensus 242 -~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 242 -ARFPVYLVLTKADLLA 257 (1169)
T ss_pred -CCCCEEEEEecchhhc
Confidence 4799999999999863
No 366
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=92.96 E-value=0.81 Score=33.31 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=41.7
Q ss_pred CcccCCccCceEEEEEE------CCEEEEEEEcCCCcchHHHHHhhccC----CcEEEEEEECCCcc
Q psy6566 4 VVHTSPTIGSNVEEVIW------KNIHFIMWDLGGQQSLRAAWSTYYTN----TEFVILVIDSTDRE 60 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~----~~~~l~v~d~~~~~ 60 (126)
...+.+|.|..+..+.+ ....+.+|-.+|...+..+....+.. --.+|+|+|.+.|.
T Consensus 48 ~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW 114 (472)
T PF05783_consen 48 IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPW 114 (472)
T ss_pred cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChH
Confidence 45677888877766666 23578999999988888877665553 24588889999864
No 367
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=92.87 E-value=0.49 Score=33.19 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=24.4
Q ss_pred EEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC
Q psy6566 24 HFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 24 ~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
.+.+.|+||... ........++.+|++++|+|..
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 589999999532 1122333478999999999974
No 368
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.79 E-value=0.076 Score=35.95 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=26.7
Q ss_pred CCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+-++++||+|+.... ..+.+...... .....+++.+||++|+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGe 275 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGE 275 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCC
Confidence 45678999999997532 12222222211 1234679999999874
No 369
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=92.56 E-value=1.3 Score=31.13 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=48.7
Q ss_pred cCCccCceEEEEEE--CC--EEEEEEEcCCCcc-------hH-------HHHHhhc--------------cCCcEEEEEE
Q psy6566 7 TSPTIGSNVEEVIW--KN--IHFIMWDLGGQQS-------LR-------AAWSTYY--------------TNTEFVILVI 54 (126)
Q Consensus 7 ~~pTi~~~~~~~~~--~~--~~~~i~Dt~G~~~-------~~-------~~~~~~~--------------~~~~~~l~v~ 54 (126)
..||+.+......+ ++ ..+.+.||||--. +. .+.+.|+ ...|+|+|.+
T Consensus 62 ~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI 141 (373)
T COG5019 62 TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFI 141 (373)
T ss_pred CCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEe
Confidence 56888877777777 44 5688999999211 11 1122221 2479999999
Q ss_pred ECCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 55 DSTDRERISLTK-EELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 55 d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
..+.. .+..+. ..++.+- ..+.+|-|+-|+|...
T Consensus 142 ~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 142 RPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTLT 176 (373)
T ss_pred cCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccCC
Confidence 87643 232232 2223332 3467777888999765
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.49 E-value=0.68 Score=33.27 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCEEEEEEEcCCCcchHHHH----Hhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW----STY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~----~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
++..+.|.||+|+....... ..+ ....+.+++|+|++......+..+.+. +. --+--++.||.|-..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~---~~----~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK---DS----VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH---hc----cCCcEEEEECccCCC
Confidence 36789999999976543211 111 235688999999864332222222222 11 124577899999653
No 371
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.45 E-value=0.64 Score=28.21 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=25.4
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
.+..+.+.||+|..... ..++..||.++++....
T Consensus 90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPG 123 (148)
T ss_pred cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCC
Confidence 46789999999975322 34788899999987654
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.05 E-value=0.96 Score=30.41 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCEEEEEEEcCCCcchHHHHH-------hhc-----cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWS-------TYY-----TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~-------~~~-----~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
++..+.+.||+|......... ... ..++.+++|+|++.. .+... ....+.+.. + +.-++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~-~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---G-LTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---C-CCEEEEE
Confidence 567899999999865432211 111 248999999998743 22222 223332221 2 3577899
Q ss_pred cCCCCCC
Q psy6566 89 KQDIKNS 95 (126)
Q Consensus 89 K~D~~~~ 95 (126)
|.|....
T Consensus 226 KlDe~~~ 232 (272)
T TIGR00064 226 KLDGTAK 232 (272)
T ss_pred ccCCCCC
Confidence 9997553
No 373
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.02 E-value=1.8 Score=26.61 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=39.2
Q ss_pred CCEEEEEEEcCCCcchHHH----HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA----WSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~----~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
++..+.+.||+|...+... .... ....+.+++|+|..... +..+....+.+.. + ..-++.||.|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 4567889999997533211 1111 23589999999986432 2323344443331 2 2466779999765
No 374
>KOG2423|consensus
Probab=91.77 E-value=0.43 Score=34.01 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=34.5
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 44 YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 44 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+...|+++-|+|+-+|-. .-...++.+++... +..-+++|+||+||..
T Consensus 211 iDSSDVvvqVlDARDPmG--Trc~~ve~ylkke~-phKHli~vLNKvDLVP 258 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMG--TRCKHVEEYLKKEK-PHKHLIYVLNKVDLVP 258 (572)
T ss_pred hcccceeEEeeeccCCcc--cccHHHHHHHhhcC-CcceeEEEeecccccc
Confidence 557899999999877632 12334666666543 5667899999999975
No 375
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.55 E-value=0.096 Score=33.38 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=45.4
Q ss_pred EEEEEEEcCCCcchHHHHHhhcc-CCcEEEEEEECCCcccHHHHHHHHHHHhC-CCCCCCCeEEEEEecCCCCCCCCH--
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYT-NTEFVILVIDSTDRERISLTKEELYKMLN-HEDLSKAAVLIYANKQDIKNSMSP-- 98 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~l~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~D~~~~~~~-- 98 (126)
..+.|...+|. .- .+..+. ..+.-++|+|.++-+..- .+ .+.... .=++|+||.|+......
T Consensus 97 ~Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~~-aDllVInK~DLa~~v~~dl 162 (202)
T COG0378 97 LDLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFK-ADLLVINKTDLAPYVGADL 162 (202)
T ss_pred CCEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCc---------ccCCCceeE-eeEEEEehHHhHHHhCccH
Confidence 35666666661 11 111122 234788888987643110 01 122122 45789999999764322
Q ss_pred HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 99 VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 99 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.......+ -..+.+++++|+++|+
T Consensus 163 evm~~da~~---~np~~~ii~~n~ktg~ 187 (202)
T COG0378 163 EVMARDAKE---VNPEAPIIFTNLKTGE 187 (202)
T ss_pred HHHHHHHHH---hCCCCCEEEEeCCCCc
Confidence 222221111 1235689999999985
No 376
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.31 E-value=1.6 Score=28.41 Aligned_cols=67 Identities=7% Similarity=0.130 Sum_probs=43.8
Q ss_pred EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+.++||++. ........+..+|.+++++..+ ..+...+...+..+.+.. ....++-++.|+.|...
T Consensus 116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPAR 182 (246)
T ss_pred CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcch
Confidence 7999999985 3444556678899999998764 345555543343444321 13445778999998643
No 377
>KOG0780|consensus
Probab=91.23 E-value=1.7 Score=31.01 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=33.8
Q ss_pred CCEEEEEEEcCCCcchH-----HHHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHH
Q psy6566 21 KNIHFIMWDLGGQQSLR-----AAWS-TYYTNTEFVILVIDSTDRERISLTKEELYKM 72 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~ 72 (126)
+++.+.|.||+|+-.-. .+.+ .-.-+.+-+|||.|++--...++....+++.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 78899999999964432 2222 1244689999999988655444444444443
No 378
>PHA02518 ParA-like protein; Provisional
Probab=90.84 E-value=2.6 Score=26.64 Aligned_cols=67 Identities=7% Similarity=0.017 Sum_probs=40.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH---HHHHHHHhCCCCCCCCe-EEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT---KEELYKMLNHEDLSKAA-VLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~p-iilv~nK~D~ 92 (126)
....+.++||+|.. .......+..+|.+++++..+. .++..+ ..++....... ...| ..++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQEVT--DGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHhhC--CCCceEEEEEeccCC
Confidence 44679999999873 3445567888999999987653 333333 33333321111 2344 4566677653
No 379
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=90.78 E-value=3.1 Score=28.14 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
..+.|.|+|-.- .-..-..+.++|.+++|--.| +-.+.+++..+ ++.+. -++|..++.||.++...
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~-el~~~---f~ip~~iViNr~~~g~s 229 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPT-PFGLHDLKRAL-ELVEH---FGIPTGIVINRYNLGDS 229 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCC-ccchhHHHHHH-HHHHH---hCCceEEEEecCCCCch
Confidence 567788886221 112334688999999987655 34555555433 33333 57999999999965543
No 380
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=90.31 E-value=3.2 Score=26.31 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+...+.+.|+|..... .......+.+|.+++|.+.. ..+...+.+....+ +.. ....+-+|.||.|...
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~-~~~~~~~~~~~~~l-~~~--~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAG-EIKKRDVQKAKEQL-EQT--GSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHH-HhC--CCCEEEEEEeCccccc
Confidence 4567889999863221 11223456799999999864 34555555544433 321 2235678999998654
No 381
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=89.26 E-value=3.5 Score=25.28 Aligned_cols=67 Identities=4% Similarity=0.029 Sum_probs=42.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhh-ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTY-YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
++..+.+.|+|+.-.-... ... ...+|.++++.... +.+...+...+..+.+. .-...-++.|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~~~~~-~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTGDEHL-TLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCcHHHH-HHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence 4677999999986432222 111 25789999998754 45666666655555433 22345678999874
No 382
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=88.79 E-value=1.8 Score=28.75 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=40.5
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 91 (126)
+...+.++||+|.-.... ....+..||.+++++.. +..++..+...+..+.+.....++++ -++.|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 457799999987643222 22236679999998864 44555555544433321111145654 47889976
No 383
>KOG0781|consensus
Probab=88.55 E-value=5.6 Score=29.33 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCEEEEEEEcCCCcchHHH-H---H--hhccCCcEEEEEEECC-CcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA-W---S--TYYTNTEFVILVIDST-DRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~-~---~--~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
++..+.+.||+|+..-... . . .-....|.++||-.+. ..++.+.+.+ +...+.....+..---++.+|+|-.
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~-fn~al~~~~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKK-FNRALADHSTPRLIDGILLTKFDTV 543 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHH-HHHHHhcCCCccccceEEEEeccch
Confidence 6778999999997543321 1 1 1256789999997543 4467777765 5555555433333345688999965
Q ss_pred C
Q psy6566 94 N 94 (126)
Q Consensus 94 ~ 94 (126)
+
T Consensus 544 ~ 544 (587)
T KOG0781|consen 544 D 544 (587)
T ss_pred h
Confidence 5
No 384
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=88.53 E-value=3.3 Score=26.96 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=41.4
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC-eEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA-AVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~ 93 (126)
+...+.++|+++..... ....+..+|.++++++.+ ..++..+.... +..+. .+. .+.++.|+.+..
T Consensus 107 ~~yD~VIiD~p~~~~~~--~~~~l~~ad~vliv~~~~-~~s~~~~~~~~-~~~~~---~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAGLERD--AVTALAAADELLLVVNPE-ISSITDALKTK-IVAEK---LGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCccCHH--HHHHHHhCCeEEEEECCC-CchHHHHHHHH-HHHHh---cCCceEEEEEECCCch
Confidence 45789999999865433 333456799999999865 34555544432 22222 233 356899998754
No 385
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=88.11 E-value=3.9 Score=26.79 Aligned_cols=66 Identities=6% Similarity=0.072 Sum_probs=41.9
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
+...+.++|+|+..... ....+..+|.+++++... ..++..+...+..+.+. ...++.++.|+.+.
T Consensus 110 ~~~D~viiD~p~~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~iviN~~~~ 175 (261)
T TIGR01968 110 EEFDYVIIDCPAGIESG--FRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAK---GIEKIHLIVNRLRP 175 (261)
T ss_pred HhCCEEEEeCCCCcCHH--HHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHc---CCCceEEEEeCcCc
Confidence 34678899998864332 334567799999988754 45566665544433322 12367788899874
No 386
>CHL00175 minD septum-site determining protein; Validated
Probab=88.09 E-value=3.5 Score=27.58 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=40.8
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
...+.++|||+.-.. .....+..+|.+++|++.+ ..+...+...+..+.+. . ...+-++.|+.+.
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~-~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEAN-G--IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHc-C--CCceEEEEeccCh
Confidence 567899999986433 2333456799999988743 45666665544444332 2 2245678899874
No 387
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=87.87 E-value=2.3 Score=28.21 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=39.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~ 92 (126)
+...+.+.||+|....... ...+..||.++++...+ ..++..+...+..+.......+.+ .-++.|+.+.
T Consensus 114 ~~yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 114 EEYDVILFDVLGDVVCGGF-AAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred ccCCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 3467899999876432211 12367799999988654 344444433332221111113454 3468899874
No 388
>PRK14974 cell division protein FtsY; Provisional
Probab=87.82 E-value=2.7 Score=29.26 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=38.5
Q ss_pred CCEEEEEEEcCCCcchHH-H---HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA-A---WSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~-~---~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..+.+.||+|...... + .... .-..+.+++|+|++......+. ...+.+. -+ .--++.||.|...
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~---a~~f~~~---~~-~~giIlTKlD~~~ 293 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ---AREFNEA---VG-IDGVILTKVDADA 293 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH---HHHHHhc---CC-CCEEEEeeecCCC
Confidence 456799999999864322 1 1111 2357889999998653321111 2222211 12 2467889999765
Q ss_pred C
Q psy6566 95 S 95 (126)
Q Consensus 95 ~ 95 (126)
.
T Consensus 294 ~ 294 (336)
T PRK14974 294 K 294 (336)
T ss_pred C
Confidence 3
No 389
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=87.39 E-value=1.1 Score=30.00 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCcEEEEEEECCCc-----c--cHHHH----HHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 46 NTEFVILVIDSTDR-----E--RISLT----KEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 46 ~~~~~l~v~d~~~~-----~--~~~~~----~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
-.+|+|+++++.+. . .+... +.-+.++.+.-+ ...||.++++|+|+..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg-~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLG-VRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhC-CCCCeEeeeECCCccc
Confidence 46999999997632 1 11222 222333332222 4799999999999864
No 390
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=87.12 E-value=5.4 Score=27.68 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=38.6
Q ss_pred EEEEEEEcCCCcchHHHHHhhcc--------CCcEEEEEEECCCcccHHH-HHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYT--------NTEFVILVIDSTDRERISL-TKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~--------~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
....++.|.|...-.+....+.. ..++++-|+|+..-..-.. .......-+.. -=+++.||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 44557788887655554444332 3577999999765322111 22222222221 227899999998
Q ss_pred CCC
Q psy6566 94 NSM 96 (126)
Q Consensus 94 ~~~ 96 (126)
.+.
T Consensus 159 ~~~ 161 (323)
T COG0523 159 DAE 161 (323)
T ss_pred CHH
Confidence 753
No 391
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.38 E-value=2.8 Score=30.25 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=38.1
Q ss_pred CCEEEEEEEcCCCcchHH-HHH---h--hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA-AWS---T--YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~-~~~---~--~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
++..+.+.||+|...... ... . ..-..+.+++|+|++.. +++......+.... + ..=++.||.|-..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 456799999999644321 111 1 13357889999997643 33333333332221 2 2356789999543
No 392
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=86.10 E-value=4.2 Score=22.60 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=30.8
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHH
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY 70 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~ 70 (126)
..+.++|+++..... ....+..+|.++++++.+ ..++......+.
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 457899999875433 235677899999998754 456666655443
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.91 E-value=4.3 Score=28.06 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=38.3
Q ss_pred CCEEEEEEEcCCCcchHH--------HHHh---h-ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 21 KNIHFIMWDLGGQQSLRA--------AWST---Y-YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~--------~~~~---~-~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
++..+.+.||||...... +.+. . -...+..++|+|++... +.+.+ ...+.+. . -+.-++.|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~-~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---V-GLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---C-CCCEEEEE
Confidence 567899999999754222 1111 1 13467899999988532 22222 2222211 1 24478899
Q ss_pred cCCCCC
Q psy6566 89 KQDIKN 94 (126)
Q Consensus 89 K~D~~~ 94 (126)
|.|...
T Consensus 268 KlD~t~ 273 (318)
T PRK10416 268 KLDGTA 273 (318)
T ss_pred CCCCCC
Confidence 999543
No 394
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=85.43 E-value=4.2 Score=26.04 Aligned_cols=72 Identities=6% Similarity=0.021 Sum_probs=39.9
Q ss_pred CCEEEEEEEcCCCcchHHHHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 93 (126)
+...+.+.|++|......... ...+.||.++++++.+ ..++..+...++.+-......+.+ ..++.|+.+..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 457899999977643222211 1124799999998754 344444433332222211112333 45899999854
No 395
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=85.23 E-value=5.1 Score=26.29 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=43.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--CCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D 91 (126)
+...+.|.||+|... ......+..+|.++..+..+. ..+..+...+..+.+. ...++.|..++.|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 457899999999764 334456778999998877543 3344443433332221 1124678789999886
No 396
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.95 E-value=7.5 Score=27.16 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCEEEEEEEcCCCcchHHH-------HHhhccC-----CcEEEEEEECCCc-ccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 21 KNIHFIMWDLGGQQSLRAA-------WSTYYTN-----TEFVILVIDSTDR-ERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~-------~~~~~~~-----~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
+++.+.+.||+|+-..... ..+..+. .+-+++++|++-- +.+.+++ .+.+... +- -++.
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav~------l~-GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAVG------LD-GIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhcC------Cc-eEEE
Confidence 6788999999997554321 1122332 3448888898754 4555554 3554432 22 4678
Q ss_pred ecCCC
Q psy6566 88 NKQDI 92 (126)
Q Consensus 88 nK~D~ 92 (126)
+|.|-
T Consensus 292 TKlDg 296 (340)
T COG0552 292 TKLDG 296 (340)
T ss_pred Eeccc
Confidence 99994
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=84.89 E-value=7.4 Score=28.25 Aligned_cols=66 Identities=21% Similarity=0.168 Sum_probs=37.9
Q ss_pred CEEEEEEEcCCCcchHHHH------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAW------STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~------~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
...+.+.||+|+....... ......++.+++|+|++... +.......+... -+ ..-++.||.|-..
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l~-i~gvIlTKlD~~a 246 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---VG-IGGIIITKLDGTA 246 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---CC-CCEEEEecccCCC
Confidence 3478999999976643221 11134688999999986532 222222222111 11 2356789999654
No 398
>PRK09602 translation-associated GTPase; Reviewed
Probab=84.57 E-value=1.4 Score=31.42 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
...|+++++||.|+.... ..+...... ....++.+||+.+
T Consensus 216 t~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e 255 (396)
T PRK09602 216 ISKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAE 255 (396)
T ss_pred cCCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhh
Confidence 458999999999975321 112211111 2335789998765
No 399
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.33 E-value=9.3 Score=27.74 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCEEEEEEEcCCCcchHHH-H-----HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA-W-----STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~-~-----~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
.+..+.|.||+|+-..... . -.-.-+.+-+++|+|+.--....+..+-+.+.+.. . =++.+|.|-
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i---t----GvIlTKlDG 251 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI---T----GVILTKLDG 251 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC---c----eEEEEcccC
Confidence 5568999999997554331 1 11244689999999987544444444444443221 1 245677774
No 400
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.56 E-value=9.2 Score=24.41 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=36.5
Q ss_pred CCEEEEEEEcCCCcchHHH----HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA----WSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~----~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
++..+.+.||+|....... ...+ ....+-+++|.+++... +.+.. .....+. -++. =++.+|.|-..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~-~~~~~~~---~~~~-~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQ-ALAFYEA---FGID-GLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHH-HHHHHHH---SSTC-EEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHH-HHHHhhc---ccCc-eEEEEeecCCC
Confidence 4567999999997654331 1111 12577889999887543 22222 2222111 1222 45689999755
No 401
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=83.32 E-value=7.2 Score=26.51 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHH---HHHhCCCCCCCCe-EEEEEecCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL---YKMLNHEDLSKAA-VLIYANKQDI 92 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p-iilv~nK~D~ 92 (126)
...+.+.||+|.-...... ..+..||.+++++... ..++..+...+ +...+. ++.+ .-++.|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~---~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNG-FDALFAANRIAASVREKART---HPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcceechhh-hhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhcc---CCCceEEEEEeCCCc
Confidence 5678999998763222221 2357799999988753 44555554433 333221 3343 4478899873
No 402
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=82.59 E-value=7.1 Score=27.27 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=25.1
Q ss_pred EEEEEEEcCCCcchHHHHHhhc-------cCCcEEEEEEECCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYY-------TNTEFVILVIDSTD 58 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~-------~~~~~~l~v~d~~~ 58 (126)
....+..+.|...-..+...+. -..++++.|+|+.+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 4567889999877666555431 14578999999863
No 403
>PRK10818 cell division inhibitor MinD; Provisional
Probab=81.52 E-value=10 Score=25.12 Aligned_cols=69 Identities=7% Similarity=-0.005 Sum_probs=42.5
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-----CCCCCCeEEEEEecCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-----EDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~D~~ 93 (126)
...+.+.|+|+.-... ....+..+|.++++++.+ ..++..+...++.+... ....+.+..++.|+.+..
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 5789999998775433 233467899999998865 44555555544443211 111134457788988743
No 404
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=80.94 E-value=6.1 Score=26.24 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=39.3
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 93 (126)
+...+.+.||+|.-..... ...+..+|.+++++.. +..++..+...+..+.+.....+++ ..++.|+.+..
T Consensus 114 ~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 4578899999875322111 1236779999998754 3444544444333222211113454 45788998743
No 405
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=80.79 E-value=5.1 Score=24.87 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=45.2
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
..+.+.|+++..... ....+..+|.++++++.+. .+...+..+...+..... .-..+.++.||.+..+
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence 678999999865444 4456778999999998653 456666655444432211 1235788999998654
No 406
>KOG4273|consensus
Probab=80.61 E-value=1.7 Score=29.13 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=32.0
Q ss_pred cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 45 TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 45 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+...+++++||.++...+..+..|+..-.-+. -++ ++.++||.|...
T Consensus 77 ~pl~a~vmvfdlse~s~l~alqdwl~htdins--fdi-llcignkvdrvp 123 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDINS--FDI-LLCIGNKVDRVP 123 (418)
T ss_pred cceeeEEEEEeccchhhhHHHHhhcccccccc--chh-heeccccccccc
Confidence 34567899999999888888888764332111 122 466899999643
No 407
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.19 E-value=6.5 Score=32.18 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=42.1
Q ss_pred CEEEEEEEcCCCc--------chHHHHHhh---------ccCCcEEEEEEECCCccc---------HHHHHHHHHHHhCC
Q psy6566 22 NIHFIMWDLGGQQ--------SLRAAWSTY---------YTNTEFVILVIDSTDRER---------ISLTKEELYKMLNH 75 (126)
Q Consensus 22 ~~~~~i~Dt~G~~--------~~~~~~~~~---------~~~~~~~l~v~d~~~~~~---------~~~~~~~~~~~~~~ 75 (126)
+-.-.++||+|.. .-+..|..+ .+-.+|||+.+++.+.-+ ...++.-+.++.+.
T Consensus 173 ~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t 252 (1188)
T COG3523 173 TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET 252 (1188)
T ss_pred ccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3446688999942 233456544 346799999999764211 11111112222221
Q ss_pred CCCCCCeEEEEEecCCCCC
Q psy6566 76 EDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~ 94 (126)
-.-..|+.+++||.|+..
T Consensus 253 -L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 253 -LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred -hccCCceEEEEecccccc
Confidence 114789999999999864
No 408
>KOG2486|consensus
Probab=79.96 E-value=2.2 Score=29.04 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=38.9
Q ss_pred CCEEEEEEEcCC----------CcchHHHHHhhcc---CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 21 KNIHFIMWDLGG----------QQSLRAAWSTYYT---NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 21 ~~~~~~i~Dt~G----------~~~~~~~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
-+-++.+.|.+| -+.+..+...|+. +--.+++++|++-+- ........+.+.. .++|..+|.
T Consensus 181 v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge---~~VP~t~vf 255 (320)
T KOG2486|consen 181 VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGE---NNVPMTSVF 255 (320)
T ss_pred ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhh---cCCCeEEee
Confidence 345688999999 1223334444442 334466667765431 1111112222333 589999999
Q ss_pred ecCCCCC
Q psy6566 88 NKQDIKN 94 (126)
Q Consensus 88 nK~D~~~ 94 (126)
||||...
T Consensus 256 TK~DK~k 262 (320)
T KOG2486|consen 256 TKCDKQK 262 (320)
T ss_pred ehhhhhh
Confidence 9999654
No 409
>KOG2485|consensus
Probab=79.92 E-value=5.7 Score=27.53 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=32.8
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC
Q psy6566 40 WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM 96 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 96 (126)
.+..++..|.++-+-|+--|-|-+. ..+...+ +..|-++|.||+||.+..
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~-----~~k~riiVlNK~DLad~~ 89 (335)
T KOG2485|consen 40 IQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL-----PPKPRIIVLNKMDLADPK 89 (335)
T ss_pred HHhhcccccEEEEeeccccCCcccc--HHHHHhc-----CCCceEEEEecccccCch
Confidence 3445788999999999754422221 1233332 357889999999998743
No 410
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=79.91 E-value=7.2 Score=25.75 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=44.6
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE--RISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
+..+.+.||.|..... ....+..+|.+|+=+..+..+ .......++.+..+... .++|.-++.++....
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~-~~ip~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAER-RDIPAAVLFTRVPAA 153 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhC-CCCCeeEEEecCCcc
Confidence 4578999999875543 444567899999977665432 22223344555443222 578999999998743
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=79.46 E-value=15 Score=26.73 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=36.7
Q ss_pred CCEEEEEEEcCCCcchHH-HHH---h--hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA-AWS---T--YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~-~~~---~--~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..+.+.||+|.-.... +.. . ..-..+.+++|+|.... +++......+.+. -++ .-++.||.|-..
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~---~~i-~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA---LGL-TGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh---CCC-CEEEEeCccCcc
Confidence 457799999999654311 111 1 12257788999997642 2333323333221 112 345679999543
No 412
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=79.21 E-value=2.8 Score=26.15 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=37.7
Q ss_pred CEEEEEEEcCCCcchHHH------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAA------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
.....+..+.|...-... ... .-..+.++.|+|+.+..........+...++. .+ +++.||+|+...
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---AD---vIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAF---AD---VIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchh---cC---EEEEeccccCCh
Confidence 345667777775444333 111 22468899999986643333343334444433 22 789999998653
No 413
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.20 E-value=8.8 Score=21.34 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=30.0
Q ss_pred cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 34 QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
+......+..+..||.||++.|..+-.....+++ .-+. .++|++.+
T Consensus 36 ~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~----~akk---~~ip~~~~ 81 (97)
T PF10087_consen 36 EKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKK----AAKK---YGIPIIYS 81 (97)
T ss_pred ccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHH----HHHH---cCCcEEEE
Confidence 3334456777999999999999876554444433 2222 47898765
No 414
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=78.32 E-value=4.6 Score=28.55 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=28.8
Q ss_pred EEEEEEEcCCC-------cchHHHHHhhccCCcEEEEEEECCC
Q psy6566 23 IHFIMWDLGGQ-------QSLRAAWSTYYTNTEFVILVIDSTD 58 (126)
Q Consensus 23 ~~~~i~Dt~G~-------~~~~~~~~~~~~~~~~~l~v~d~~~ 58 (126)
..+.+.|.+|. +.........++.+|+++.|+|+.+
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 46889999984 4455666777999999999999763
No 415
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=77.82 E-value=11 Score=26.18 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=36.1
Q ss_pred EEEEEEEcCCCcchHHHHHhhcc--------CCcEEEEEEECCCcccHHHHHHH-HHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYT--------NTEFVILVIDSTDRERISLTKEE-LYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~--------~~~~~l~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
....+..|.|...-......++. ..++++.|+|+.+.....+.... ..++ .. -=+++.||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi------~~-AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV------GY-ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH------Hh-CCEEEEeccccC
Confidence 44567788887665555544322 24789999998642111100011 1111 11 227789999987
Q ss_pred CC
Q psy6566 94 NS 95 (126)
Q Consensus 94 ~~ 95 (126)
.+
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 53
No 416
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.62 E-value=18 Score=25.79 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=38.2
Q ss_pred CCEEEEEEEcCCCcchHHHH---Hhhc---cCCcEEEEEEECCCc-ccHHHHHHHHHHHhCCCCCCC-CeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW---STYY---TNTEFVILVIDSTDR-ERISLTKEELYKMLNHEDLSK-AAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~---~~~~---~~~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~-~piilv~nK~D~ 92 (126)
.+..+.++||+|........ ...+ ..+.-.++|++++.. +...+...-+......+...- -+-=++.+|.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 56689999999976443221 1112 234556888887753 344444332333322111000 123467799986
Q ss_pred CC
Q psy6566 93 KN 94 (126)
Q Consensus 93 ~~ 94 (126)
..
T Consensus 294 t~ 295 (374)
T PRK14722 294 AS 295 (374)
T ss_pred CC
Confidence 54
No 417
>KOG1547|consensus
Probab=75.01 E-value=23 Score=23.97 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=25.0
Q ss_pred CCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 46 NTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 46 ~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
..|+|+|.+..+.. ++..+. ..++.+. .-+.++-|+-|+|-..
T Consensus 155 RVHcclyFi~ptGh-sLrplDieflkrLt-----~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 155 RVHCCLYFIPPTGH-SLRPLDIEFLKRLT-----EVVNVVPVIAKADTLT 198 (336)
T ss_pred eEEEEEEEeCCCCC-ccCcccHHHHHHHh-----hhheeeeeEeeccccc
Confidence 46899999887753 333332 2223332 2356666777998654
No 418
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=74.42 E-value=6.2 Score=29.47 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.7
Q ss_pred CCCeEEEEEecCCCCCC
Q psy6566 79 SKAAVLIYANKQDIKNS 95 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~ 95 (126)
-++|+++++||.|...+
T Consensus 371 FGvPvVVAINKFd~DTe 387 (557)
T PRK13505 371 FGVPVVVAINKFVTDTD 387 (557)
T ss_pred cCCCEEEEEeCCCCCCH
Confidence 47999999999998764
No 419
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=74.07 E-value=26 Score=24.10 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=47.0
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
+...+.++|+++.... .....+..+|.++++++.+ ..+...+...+..+-.. +..+-++.|+... .....++
T Consensus 203 ~~~D~VIID~p~~~~~--~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~----~~~~~lVv~~~~~-~~~~~~~ 274 (322)
T TIGR03815 203 RGGDLVVVDLPRRLTP--AAETALESADLVLVVVPAD-VRAVAAAARVCPELGRR----NPDLRLVVRGPAP-AGLDPEE 274 (322)
T ss_pred hcCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhh----CCCeEEEEeCCCC-CCCCHHH
Confidence 4467899999987543 3455688899999998753 45666666655544322 1233445565432 2234456
Q ss_pred HHhhcC
Q psy6566 101 ISNLLD 106 (126)
Q Consensus 101 v~~~~~ 106 (126)
+.+.++
T Consensus 275 i~~~lg 280 (322)
T TIGR03815 275 IAESLG 280 (322)
T ss_pred HHHHhC
Confidence 666554
No 420
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.45 E-value=26 Score=27.23 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=44.5
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+...+.++|+|........ ......+|++++|+.. +..+...+...++.+... ....+-+|.|+.|...
T Consensus 654 ~~yD~IiID~pp~~~~~d~-~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVRDM-RAAARLAIIMLLVTAY-DRVVVECGRADAQGISRL---NGEVTGVFLNMLDPND 722 (754)
T ss_pred hhCCEEEEcCCCcchhHHH-HHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhc---CCceEEEEecCCChhh
Confidence 4577899999987543332 2335579999999874 455666666655555332 2234568999998543
No 421
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=73.38 E-value=17 Score=25.82 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=26.5
Q ss_pred EEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC
Q psy6566 23 IHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 23 ~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
..+.+.|.||.-. ........++.+|+++.|+|..
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 4689999999533 3334555689999999999974
No 422
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=73.37 E-value=2.6 Score=30.79 Aligned_cols=46 Identities=9% Similarity=-0.045 Sum_probs=26.1
Q ss_pred CCeEEEEEecCCCCCC----C--CHH--HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 80 KAAVLIYANKQDIKNS----M--SPV--EISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 80 ~~piilv~nK~D~~~~----~--~~~--~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
++|++||++|+|.... . ..+ ++.+..-+.+.-..+...+++|++..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~ 249 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEE 249 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecccc
Confidence 5899999999996431 1 111 12222222333345667888887653
No 423
>KOG2655|consensus
Probab=72.99 E-value=31 Score=24.56 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=46.3
Q ss_pred CccCceEEEEEE--CC--EEEEEEEcCCC-------cchH-------HHHHhh-----------cc--CCcEEEEEEECC
Q psy6566 9 PTIGSNVEEVIW--KN--IHFIMWDLGGQ-------QSLR-------AAWSTY-----------YT--NTEFVILVIDST 57 (126)
Q Consensus 9 pTi~~~~~~~~~--~~--~~~~i~Dt~G~-------~~~~-------~~~~~~-----------~~--~~~~~l~v~d~~ 57 (126)
.|+.+......+ ++ ..+.+.||||- ..++ ...+.| +. ..|+|+|.+..+
T Consensus 61 ~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ 140 (366)
T KOG2655|consen 61 ETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT 140 (366)
T ss_pred ccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC
Confidence 366677777777 44 56778999982 1111 122222 22 579999999866
Q ss_pred CcccHHHHH-HHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 58 DRERISLTK-EELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
.. .+.... ...+.+ . ..+++|-|+-|+|....
T Consensus 141 gh-gL~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 141 GH-GLKPLDIEFMKKL-S----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred CC-CCcHhhHHHHHHH-h----ccccccceeeccccCCH
Confidence 43 222221 112222 1 35677778889997653
No 424
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=72.70 E-value=23 Score=22.85 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=40.5
Q ss_pred EEEEEEEcCCCcc-hHHHHHhhccC--CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 23 IHFIMWDLGGQQS-LRAAWSTYYTN--TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 23 ~~~~i~Dt~G~~~-~~~~~~~~~~~--~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
..+.++|+|-... ........+.. ++.+++|.... ..+..++...+..+... . -...-++.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~-~--~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALY-G--IPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHC-C--CCCCEEEEeCCcCc
Confidence 7799999985422 22333334443 47888888754 45666676655555333 1 12346788998654
No 425
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.42 E-value=23 Score=26.67 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=36.2
Q ss_pred CCEEEEEEEcCCCcchHHHHH------hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWS------TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..+.++||+|......... .... ....++|++.+. +..+....+..+.. ..+.-++.||.|...
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 457899999999754322110 1111 234566676653 33344333433322 135678999999754
No 426
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=71.98 E-value=26 Score=23.32 Aligned_cols=51 Identities=8% Similarity=0.011 Sum_probs=31.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHh
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~ 73 (126)
+...+.+.|+|-.... .........+|++++|+... ..+...+....+.+.
T Consensus 211 ~~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~-~t~~~~~~~~~~~l~ 261 (274)
T TIGR03029 211 GDYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVN-ETRLHELTSLKEHLS 261 (274)
T ss_pred hcCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHH
Confidence 4466888898865322 22333456789999988753 455666655555443
No 427
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=69.86 E-value=19 Score=23.73 Aligned_cols=69 Identities=9% Similarity=0.108 Sum_probs=36.1
Q ss_pred CCEEEEEEEcCCCcchHHHH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW-STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQ 90 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~ 90 (126)
+...+.+.||+|........ ......+|.+++++..+ +.++..+...+..+.+.....+.++. ++.|+.
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 45678999998764322221 11233589999998754 44555554433332221111344544 455653
No 428
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=67.89 E-value=22 Score=23.19 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=26.5
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
.+..+|.+++.-|+++....+.....+..+ +.. +...+++.||+ |.
T Consensus 38 ~~~~~D~viiaGDl~~~~~~~~~~~~l~~l-~~l--~~~v~~V~GNH-D~ 83 (232)
T cd07393 38 VVAPEDIVLIPGDISWAMKLEEAKLDLAWI-DAL--PGTKVLLKGNH-DY 83 (232)
T ss_pred cCCCCCEEEEcCCCccCCChHHHHHHHHHH-HhC--CCCeEEEeCCc-cc
Confidence 345799999999998654444333323322 221 23246777777 64
No 429
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=66.14 E-value=12 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=24.1
Q ss_pred CCCeEEEEEecCCCCCCCC---HHHHHhhcCcCcccCCceEEEEeeee
Q psy6566 79 SKAAVLIYANKQDIKNSMS---PVEISNLLDLTSIKKQQWHIQSCCAL 123 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~ 123 (126)
...|+++++||.|...... ...+.... ...+.+++.+||.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~-----~~~~~~vV~~sA~ 247 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELA-----AKENAEVVPVSAA 247 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHh-----hhcCCcEEEeeHH
Confidence 4689999999999765432 22222221 2233457777775
No 430
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.86 E-value=39 Score=22.90 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=37.2
Q ss_pred CEEEEEEEcCCCcchHH----HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRA----AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~----~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+..+.+.||+|+..... .+..++ ...+-+++|++++.. .+++......+- . - .+--++.+|.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~-~---~-~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK-D---I-HIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhC-C---C-CCCEEEEEeecCCC
Confidence 57899999999864321 112222 245668889987632 223333333332 1 1 23356889999755
No 431
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.66 E-value=49 Score=24.01 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=36.5
Q ss_pred CCEEEEEEEcCCCcchHH----HHHhhcc---CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA----AWSTYYT---NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~----~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
.+..+.+.||+|...... ....+++ ....+.+|++.+-. ...+...+..+ +. -+ +--++.+|.|-.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet 370 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDET 370 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEeccccc
Confidence 457899999999754431 1222233 23466777777532 23333333333 11 11 225789999975
Q ss_pred C
Q psy6566 94 N 94 (126)
Q Consensus 94 ~ 94 (126)
.
T Consensus 371 ~ 371 (424)
T PRK05703 371 S 371 (424)
T ss_pred c
Confidence 4
No 432
>KOG1487|consensus
Probab=65.57 E-value=7.9 Score=26.35 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=34.0
Q ss_pred EEECCEEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCCcccHHHH
Q psy6566 18 VIWKNIHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTDRERISLT 65 (126)
Q Consensus 18 ~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~ 65 (126)
+++++-++++.|.||.-.- ..+.-...+.|+.+++|+|+..|-+...+
T Consensus 101 ~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 101 IRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred EeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHH
Confidence 3347778999999985221 12333456789999999999988666555
No 433
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=64.63 E-value=24 Score=21.03 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=29.2
Q ss_pred cCCcEEEEEEECCCcccHHHHHHHHHHHhCC-CCCCCCeEEE
Q psy6566 45 TNTEFVILVIDSTDRERISLTKEELYKMLNH-EDLSKAAVLI 85 (126)
Q Consensus 45 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piil 85 (126)
+.-||.||.+-++...+-..+..|+..+.+. +.+.++|+++
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 3457788877777777777788888777663 4456788775
No 434
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=64.25 E-value=30 Score=23.08 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=37.6
Q ss_pred CCEEEEEEEcCCCcchHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 91 (126)
+...+.+.||+|.-....+ ....+..||.+++++.. ++.++..+...++.+.+....++.++ -++.|+..
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~-e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSG-EMMAMYAANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 3467899999775322111 11122368999998854 55666666554433221111144554 36678653
No 435
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=64.09 E-value=37 Score=22.09 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=33.1
Q ss_pred CCccCceEEEEEE---CCEEEEEEEcCCCcchH------HHHHhhccC--CcEEEEEEECCCcc
Q psy6566 8 SPTIGSNVEEVIW---KNIHFIMWDLGGQQSLR------AAWSTYYTN--TEFVILVIDSTDRE 60 (126)
Q Consensus 8 ~pTi~~~~~~~~~---~~~~~~i~Dt~G~~~~~------~~~~~~~~~--~~~~l~v~d~~~~~ 60 (126)
..|.|+......+ ++..+.+.||+|..... ......+.. ++.+||..+.....
T Consensus 42 ~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 42 QTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred CCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcccH
Confidence 4566666655555 46889999999964322 122233333 78888888766443
No 436
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.35 E-value=49 Score=23.98 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=34.8
Q ss_pred CEEEEEEEcCCCcchHHH----HHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAA----WSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~----~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+..+.+.||+|....... ...+.. ..+.+++|.+... ...++......+ +. -+ +--++.+|.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f-~~---l~-i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL-AE---IP-IDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc-Cc---CC-CCEEEEEcccCCC
Confidence 578999999998543221 112222 3456667766532 233333323222 11 12 3356789999654
No 437
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=63.03 E-value=34 Score=21.66 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCcEEEEEEECCCcccHHHHHHHHHHHhC
Q psy6566 46 NTEFVILVIDSTDRERISLTKEELYKMLN 74 (126)
Q Consensus 46 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~ 74 (126)
..|.|+|++|.....++..+..-+..+..
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~ 92 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDP 92 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCCh
Confidence 47999999999998888888776665533
No 438
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=60.62 E-value=61 Score=23.35 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=28.6
Q ss_pred cCCcEEEEEEECCCcc----cHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 45 TNTEFVILVIDSTDRE----RISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 45 ~~~~~~l~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
-++|.+.+....++++ +.++.....+.+.+. .+.|+++.+.
T Consensus 152 ~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~a---v~vPLIL~gs 196 (389)
T TIGR00381 152 FGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQA---VDVPIVIGGS 196 (389)
T ss_pred hCCCEEEEEecCCCccccccCHHHHHHHHHHHHHh---CCCCEEEeCC
Confidence 4799999999888876 333444445556554 5789988855
No 439
>COG2403 Predicted GTPase [General function prediction only]
Probab=59.87 E-value=60 Score=23.50 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=47.4
Q ss_pred CcccCCccCceEEEEEE--------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC
Q psy6566 4 VVHTSPTIGSNVEEVIW--------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH 75 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~--------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~ 75 (126)
.+.|.||.+....-+.+ +.-.+.+||=+|.. | -+-..|+.|.++|+.++ .+++. ..
T Consensus 198 ye~~I~tg~~vlAGvdy~~vlke~~~~aD~IlwdGgnnd-f------Pfvkpd~~Ivvvda~rp--g~ei~-------~~ 261 (449)
T COG2403 198 YESYIPTGGGVLAGVDYGTVLKEGEKEADFILWDGGNND-F------PFVKPDLHIVVVDALRP--GEEIG-------SF 261 (449)
T ss_pred HhhccccccceEeeeeHHHHHHHHhhhccEEEEeCCCCC-C------CcccCCeeEEEecCCCC--chhhc-------cC
Confidence 34677888755555554 33379999966643 2 24458888899998765 22222 22
Q ss_pred CCCC--CCeEEEEEecCCCCCCCCHHHH
Q psy6566 76 EDLS--KAAVLIYANKQDIKNSMSPVEI 101 (126)
Q Consensus 76 ~~~~--~~piilv~nK~D~~~~~~~~~v 101 (126)
..-- ..--+++.||+|-......+++
T Consensus 262 pGe~~irlAD~VIItkveea~~~kvrkI 289 (449)
T COG2403 262 PGELRIRLADLVIITKVEEAMAEKVRKI 289 (449)
T ss_pred CCceeeeeccEEEEecccccchHHHHHH
Confidence 1111 2234778899987654333333
No 440
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=59.80 E-value=25 Score=18.56 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=35.7
Q ss_pred EEEEEEcCCCcchHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 24 HFIMWDLGGQQSLRAA-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
.+.+.|+++....... .......++.++++++... .+....................+..++.|
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 5789999987554432 1345667899999987654 34444443332222222223455555554
No 441
>KOG2743|consensus
Probab=59.32 E-value=57 Score=22.95 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=26.9
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhcc--------CCcEEEEEEECC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYT--------NTEFVILVIDST 57 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~--------~~~~~l~v~d~~ 57 (126)
+.....+..|.|...-.+....++- +-|+++-|+|+-
T Consensus 144 GkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K 188 (391)
T KOG2743|consen 144 GKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAK 188 (391)
T ss_pred CCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehh
Confidence 3455678899998877776665542 469999999964
No 442
>KOG1201|consensus
Probab=58.59 E-value=59 Score=22.53 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM 72 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~ 72 (126)
.+..+.+||+-.+-..+......-.+ .+--|++|+++++......+.+++.
T Consensus 61 rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 61 RGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred hCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 34578899987654444322111012 6788999999887766665544433
No 443
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.38 E-value=74 Score=23.32 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=36.6
Q ss_pred CEEEEEEEcCCCcchHHH----HHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAA----WSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~----~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+..+.+.||+|+...... ....+ ...+.+++|+|++-. .+++......+- . -+ .-=++.+|.|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~-~---~~-idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK-D---IH-IDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhc-C---CC-CCEEEEEcccCCC
Confidence 467999999997553221 12222 245778888887532 223333333332 1 12 2356789999654
No 444
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=56.97 E-value=9.7 Score=20.52 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHH
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAA 39 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 39 (126)
+|....|+|.++..... ++..-.=||.-|-+.|...
T Consensus 33 ~F~P~~P~I~VnI~~~~-~~~~~~EWDVv~C~SF~ee 68 (77)
T PF10718_consen 33 DFEPKEPTIHVNIRSLK-NGEIEMEWDVVGCLSFVEE 68 (77)
T ss_pred CcCCCCCEEEEEEEeCC-CCcEEEEEEecccccchhc
Confidence 34555677776665433 3444455999888887653
No 445
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=53.69 E-value=40 Score=22.45 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=36.2
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQ 90 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~ 90 (126)
+...+.+.||.|.-....+.. .+ ..||.+++++.. +..++..+...++.+.+....++.+++ ++.|+.
T Consensus 117 ~~yD~iliD~~~~~~~~al~~-~~~~~aad~viIp~~p-~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 117 DDLDFVFFDVLGDVVCGGFAM-PIRDGKAQEVYIVASG-EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred CCCCEEEEecCCceeeccccc-cchhccCceEEEeccc-cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 456789999976432211110 01 258889998865 345666655543333111111455544 788875
No 446
>PRK13660 hypothetical protein; Provisional
Probab=53.49 E-value=57 Score=20.79 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=27.4
Q ss_pred chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 35 SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
+++.-.+.-+..+++++.++|-..+.+-... +..+.+.....+.|+..+
T Consensus 118 q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~---~~~A~k~~~~~~y~i~~I 166 (182)
T PRK13660 118 QFRQYNQFMLEHTDGALLVYDEENEGSPKYF---YEAAKKKQEKEDYPLDLI 166 (182)
T ss_pred HHHHHHHHHHHccCeEEEEEcCCCCCChHHH---HHHHHHhhhccCceEEEe
Confidence 3555555567888999999986544333222 222322222246777766
No 447
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=53.41 E-value=1e+02 Score=23.89 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC-CCCHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN-SMSPV 99 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~ 99 (126)
+...+.+..++ .....+.+ ..+-||.+++++|.+=-=.. +... +..++...+ -..++-|.++.|+-. ..+..
T Consensus 111 K~RRiTflEcp--~Dl~~miD-vaKIaDLVlLlIdgnfGfEM-ETmE-FLnil~~HG--mPrvlgV~ThlDlfk~~stLr 183 (1077)
T COG5192 111 KTRRITFLECP--SDLHQMID-VAKIADLVLLLIDGNFGFEM-ETME-FLNILISHG--MPRVLGVVTHLDLFKNPSTLR 183 (1077)
T ss_pred ceeEEEEEeCh--HHHHHHHh-HHHhhheeEEEeccccCcee-hHHH-HHHHHhhcC--CCceEEEEeecccccChHHHH
Confidence 67889999988 33445554 36779999999997632111 1122 334444432 224677899999865 33344
Q ss_pred HHHhhcCcCccc--CCceEEEEeeee
Q psy6566 100 EISNLLDLTSIK--KQQWHIQSCCAL 123 (126)
Q Consensus 100 ~v~~~~~~~~~~--~~~~~~~~~Sa~ 123 (126)
.+...+.-.+.. -.+..+|..|..
T Consensus 184 ~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 184 SIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred HHHHHHhhhHHHHHcCCceEEEeccc
Confidence 444443322221 134556666654
No 448
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=52.98 E-value=37 Score=22.63 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=28.0
Q ss_pred CCEEEEEEEcCCCcchHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAA-WSTYYTNTEFVILVIDSTDRERISLTKEEL 69 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~ 69 (126)
+...+.+.||+|....... .......+|.+++++... +.++..+...+
T Consensus 114 ~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~ 162 (275)
T TIGR01287 114 DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNIC 162 (275)
T ss_pred ccCCEEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHH
Confidence 3467899999875432221 111133689999988653 45565554443
No 449
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.58 E-value=55 Score=25.87 Aligned_cols=69 Identities=9% Similarity=0.076 Sum_probs=36.2
Q ss_pred CCEEEEEEEcCCCcchHH----HHHhh--ccCCcEEEEEEECCCc-ccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA----AWSTY--YTNTEFVILVIDSTDR-ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~----~~~~~--~~~~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
.+..+.++||+|...... ..... ....+-+++|+|.+.. +.+.++ ...+-.... .+ +-=++.+|.|-.
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~-~~-i~glIlTKLDEt 336 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAG-ED-VDGCIITKLDEA 336 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhccc-CC-CCEEEEeccCCC
Confidence 456799999999543221 11111 2245678899988742 333333 222211100 01 235678999865
Q ss_pred C
Q psy6566 94 N 94 (126)
Q Consensus 94 ~ 94 (126)
.
T Consensus 337 ~ 337 (767)
T PRK14723 337 T 337 (767)
T ss_pred C
Confidence 4
No 450
>PF13667 ThiC-associated: ThiC-associated domain ; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=50.43 E-value=14 Score=20.07 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=11.8
Q ss_pred CCccCceEEEEEE-CC---------EEEEEEEcCCC
Q psy6566 8 SPTIGSNVEEVIW-KN---------IHFIMWDLGGQ 33 (126)
Q Consensus 8 ~pTi~~~~~~~~~-~~---------~~~~i~Dt~G~ 33 (126)
.+.+.+-++.|.+ .+ -.|.++||+|-
T Consensus 15 ~~~irVPmR~I~Ls~t~~~~~~~~n~p~~vYDTSGP 50 (80)
T PF13667_consen 15 RPDIRVPMREIHLSDTPIGNGGSPNPPVPVYDTSGP 50 (80)
T ss_dssp STT-EEEEEEE---GG------G----EEEE---GG
T ss_pred CCCceeecEEEEeCCCccccccCCCCCcCcccCCCC
Confidence 4555666777777 33 57888888874
No 451
>KOG1491|consensus
Probab=50.01 E-value=28 Score=24.71 Aligned_cols=36 Identities=11% Similarity=0.326 Sum_probs=27.0
Q ss_pred EEEEEEEcCCC-------cchHHHHHhhccCCcEEEEEEECCC
Q psy6566 23 IHFIMWDLGGQ-------QSLRAAWSTYYTNTEFVILVIDSTD 58 (126)
Q Consensus 23 ~~~~i~Dt~G~-------~~~~~~~~~~~~~~~~~l~v~d~~~ 58 (126)
..+.++|++|. +.........++.+|+++-|+++-+
T Consensus 84 a~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 84 AFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 46889999984 3345556667899999999988553
No 452
>PRK13236 nitrogenase reductase; Reviewed
Probab=49.28 E-value=65 Score=21.97 Aligned_cols=72 Identities=8% Similarity=0.135 Sum_probs=37.1
Q ss_pred CCEEEEEEEcCCCcchHHHH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW-STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~ 93 (126)
+...+.+.|++|........ ...+..||.++++... ++.++..+.+....+.+....++.++ -++.|+.+..
T Consensus 120 ~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttp-e~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~ 193 (296)
T PRK13236 120 QDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSG-EMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVD 193 (296)
T ss_pred ccCCEEEEeccccceeccccccchhccCCEEEEecCc-chHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCc
Confidence 35678899987542211111 1114578888888753 55566555433222222111134553 4667886544
No 453
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=49.22 E-value=55 Score=22.30 Aligned_cols=69 Identities=7% Similarity=0.108 Sum_probs=36.5
Q ss_pred CCEEEEEEEcCCCcchHHHH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW-STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQ 90 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 90 (126)
+...+.+.||+|.-...... ......||.+++++.. ++.++..+...++.+.+....++.. .-++.|+.
T Consensus 118 ~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~p-e~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~ 188 (295)
T PRK13234 118 DDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSG-EMMALYAANNIAKGILKYANSGGVRLGGLICNER 188 (295)
T ss_pred ccCCEEEEEcCCCceECCCccccccccCceEEEecCc-cHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 35678999997642211111 1001378999998864 4556666655443333221113343 34677853
No 454
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=49.09 E-value=53 Score=19.18 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=22.3
Q ss_pred EEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH
Q psy6566 25 FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 64 (126)
+.+-|+-|... ......+|.+++.-|+.+.....+
T Consensus 3 ~~isD~H~~~~-----~~~~~~~D~vi~~GD~~~~~~~~~ 37 (135)
T cd07379 3 VCISDTHSRHR-----TISIPDGDVLIHAGDLTERGTLEE 37 (135)
T ss_pred EEEeCCCCCCC-----cCcCCCCCEEEECCCCCCCCCHHH
Confidence 34557766643 113457899999999887544443
No 455
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.05 E-value=99 Score=22.29 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCEEEEEEEcCCCcchHH----HHHhhccC---CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA----AWSTYYTN---TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~----~~~~~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
.+..+.+.||+|...... ....++.. ..-.++|+|++.. ..++.+.+..+... -+-=++.+|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCC
Confidence 567899999999754322 11122222 2358888988753 33333434444211 1335678898864
Q ss_pred C
Q psy6566 94 N 94 (126)
Q Consensus 94 ~ 94 (126)
.
T Consensus 326 ~ 326 (388)
T PRK12723 326 T 326 (388)
T ss_pred C
Confidence 4
No 456
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=48.42 E-value=89 Score=22.73 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=37.7
Q ss_pred CCEEEEEEEcCCCcchHHH----HHhhccC--CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA----WSTYYTN--TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~----~~~~~~~--~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
..+.+.+.||+|....... ...++.. ..-+.+|++++.. .+++...+.++- . -++ --++.+|.|-..
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~-~---~~i-~~~I~TKlDET~ 352 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS-L---FPI-DGLIFTKLDETT 352 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc-c---CCc-ceeEEEcccccC
Confidence 5678999999998665442 2233332 2335556666542 334444344441 1 122 356789999665
Q ss_pred C
Q psy6566 95 S 95 (126)
Q Consensus 95 ~ 95 (126)
.
T Consensus 353 s 353 (407)
T COG1419 353 S 353 (407)
T ss_pred c
Confidence 4
No 457
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=47.95 E-value=78 Score=20.80 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=38.3
Q ss_pred EEEEEcCCCcchHHHHHhhc--cCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 25 FIMWDLGGQQSLRAAWSTYY--TNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~~~~~~~--~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
+.+-|+-|....-....... ..+|.++..-|+++.. ..+....++..+.. -+.|++++--.+|.
T Consensus 8 l~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~----l~~pv~~V~GNhD~ 74 (224)
T cd07388 8 LATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGE----AHLPTFYVPGPQDA 74 (224)
T ss_pred EEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHh----cCCceEEEcCCCCh
Confidence 45668887643322222233 5799999999999865 34545444443422 24677776666674
No 458
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=47.88 E-value=47 Score=22.25 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=28.1
Q ss_pred CEEEEEEEcCCCcchHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHH
Q psy6566 22 NIHFIMWDLGGQQSLRAA-WSTYYTNTEFVILVIDSTDRERISLTKEEL 69 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~ 69 (126)
...+.+.||+|....... ....+..||.+++++.. ++.++..+...+
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p-~~~si~~~~~ll 163 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTC-DPMAIYAANNIC 163 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccc-hHHHHHHHHHHH
Confidence 577899999875322111 11223458999998875 345565554433
No 459
>KOG1534|consensus
Probab=47.57 E-value=26 Score=23.25 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=39.2
Q ss_pred EEEEEEcCCCcchH-------HHHHhhc--cCCcEEEEEEECC---Cc-ccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 24 HFIMWDLGGQQSLR-------AAWSTYY--TNTEFVILVIDST---DR-ERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~-------~~~~~~~--~~~~~~l~v~d~~---~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
.+-++|.|||-... ...++.- .---+++|++|.. +. ..+..+..-+..+.. -..|-+=+.+|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhHH
Confidence 47789999985432 2222221 1123566776642 11 122223223333333 257778888999
Q ss_pred CCCCCCCHHHHH
Q psy6566 91 DIKNSMSPVEIS 102 (126)
Q Consensus 91 D~~~~~~~~~v~ 102 (126)
||...++-.++.
T Consensus 175 DLlk~~~k~~l~ 186 (273)
T KOG1534|consen 175 DLLKDKNKKELE 186 (273)
T ss_pred HHhhhhhHHHHH
Confidence 987654433433
No 460
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=47.49 E-value=85 Score=21.07 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=29.8
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 42 TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 42 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
.....+|.++-.|+..+...-..+.+-++-+.+.. .++.|+.++-|=.
T Consensus 150 ~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r-~~~tpVgivrnag 197 (249)
T COG1010 150 RAAAEADFVIALYNPISKRRPEQLGRAFEILREHR-SPDTPVGIVRNAG 197 (249)
T ss_pred HHHhhCCEEEEEECCccccchHHHHHHHHHHHHhc-CCCCcEEEEecCC
Confidence 34567899999998776553334433333333332 2688988887664
No 461
>KOG0052|consensus
Probab=46.37 E-value=18 Score=25.92 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=42.5
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEEC-CC----cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDS-TD----RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~-~~----~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
....+.+.|.+|+..+....-.-...||..++.+.. .. ..+..... .+..+-...+.-.++++.+||+|-..
T Consensus 80 ~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt--~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 80 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT--REHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchh--hhhhhhhccccceeeeEEeecccccC
Confidence 556788899999988876444335667776666554 11 11222221 22222233334678899999999754
No 462
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=44.68 E-value=81 Score=20.06 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=26.0
Q ss_pred EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHH
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM 72 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~ 72 (126)
.+.++|++...... ........+|.+++|+... ..+...+.+.+..+
T Consensus 150 D~IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~-~~~~~~~~~~~~~l 196 (207)
T TIGR03018 150 RIIIIDTPPLLVFS-EARALARLVGQIVLVVEEG-RTTQEAVKEALSAL 196 (207)
T ss_pred CEEEEECCCCcchh-HHHHHHHhCCEEEEEEECC-CCCHHHHHHHHHHh
Confidence 57788887654322 2222345578888887754 34455555444333
No 463
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=43.69 E-value=64 Score=18.56 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=24.3
Q ss_pred cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 45 TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 45 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
..++...++++.. .+........+.++-... .++|++++.++-
T Consensus 35 ~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~ 77 (115)
T PF03709_consen 35 SFTDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERD 77 (115)
T ss_dssp CTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCC
T ss_pred hCCCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCC
Confidence 3466666666644 333344444455554433 689999998854
No 464
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.38 E-value=69 Score=23.48 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=35.4
Q ss_pred CCEEEEEEEcCCCcch-HHH---HHhhcc-----CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSL-RAA---WSTYYT-----NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~-~~~---~~~~~~-----~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
.+..+.+.||+|.... ... +..+++ ...-.++|+|++... +++......+ +. -+ +-=++.+|.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~---~~-~~glIlTKLD 370 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES---LN-YRRILLTKLD 370 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC---CC-CCEEEEEccc
Confidence 4667899999997532 111 122222 234678888877532 2222222222 22 12 2356788998
Q ss_pred CCC
Q psy6566 92 IKN 94 (126)
Q Consensus 92 ~~~ 94 (126)
-..
T Consensus 371 Et~ 373 (432)
T PRK12724 371 EAD 373 (432)
T ss_pred CCC
Confidence 654
No 465
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=43.08 E-value=79 Score=19.49 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=28.3
Q ss_pred CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 47 TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 47 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
-+..+.--..+-+.++++-..|+.+..- ..+-..+++++||-
T Consensus 84 y~vYivtaamdhp~s~~dK~eWl~E~FP--Fi~~qn~vfCgnKn 125 (180)
T COG4502 84 YNVYIVTAAMDHPKSCEDKGEWLKEKFP--FISYQNIVFCGNKN 125 (180)
T ss_pred heEEEEEeccCCchhHHHHHHHHHHHCC--CCChhhEEEecCCC
Confidence 3444443334468899999899887743 33556789999985
No 466
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=42.17 E-value=33 Score=20.08 Aligned_cols=42 Identities=10% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 46 NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 46 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..+++.-|++- .++...+..+.+. .++|++.+.+|..|..
T Consensus 43 ~a~LVviA~Dv~P----~~~~~~l~~lc~~---~~vpyv~V~sk~~LG~ 84 (116)
T COG1358 43 KAKLVVIAEDVSP----EELVKHLPALCEE---KNVPYVYVGSKKELGK 84 (116)
T ss_pred CCcEEEEecCCCH----HHHHHHHHHHHHh---cCCCEEEeCCHHHHHH
Confidence 4777777777542 2333444444443 6899999999987754
No 467
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=42.03 E-value=1e+02 Score=20.46 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=39.9
Q ss_pred EEEEEcCCCcchHHHHHhhc--cCCcEEEEEEECC--CcccHHHHHHH--HHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 25 FIMWDLGGQQSLRAAWSTYY--TNTEFVILVIDST--DRERISLTKEE--LYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~~~~~~~--~~~~~~l~v~d~~--~~~~~~~~~~~--~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+.+-|.-|....-....... ..+|.+++..|++ ....-..+... +..+. . ..+|++.+--+||-..
T Consensus 7 l~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~---~~~~v~avpGNcD~~~ 78 (226)
T COG2129 7 LAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALK-E---LGIPVLAVPGNCDPPE 78 (226)
T ss_pred EEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHH-h---cCCeEEEEcCCCChHH
Confidence 44557777765333332233 3799999999999 54444444332 22332 2 4689888888888544
No 468
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=41.65 E-value=85 Score=20.95 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=38.3
Q ss_pred CCEEEEEEEcCCCcchHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 91 (126)
+...+.+.||+|....... ....+..||.+++++.. ++.++..+...++.+..... .+.++ -++.|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p-~~~sl~~~~~~~k~l~~~~~-~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASG-ELMAIYAANNICKGLAKFAK-GGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCc-hHHHHHHHHHHHHHHHHHhC-CCCceeEEEEeCCC
Confidence 4567899999876431111 11113478999998863 45566655443333322111 34555 37778765
No 469
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=38.78 E-value=1.3e+02 Score=20.64 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=35.9
Q ss_pred CEEEEEEEcCCCcch-HHHHHhhccCCcEEEEEEECCCcccHHHH---HHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 22 NIHFIMWDLGGQQSL-RAAWSTYYTNTEFVILVIDSTDRERISLT---KEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~-~~~~~~~~~~~~~~l~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
...+.+.|++|...- ..........||.++.+... +..++..+ .+.+..+ +.....-.++-++.|+.+.
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~-e~~sl~~a~~l~k~v~~~-~~~~~~v~i~GVV~N~~~~ 194 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSN-DRQSLYVANNICNAVEYF-RKLGGRVGLLGLVVNRDDG 194 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecc-hHHHHHHHHHHHHHHHHH-HHcCCCCcceEEEEeCCCC
Confidence 578999998775310 00011123468888888754 33344333 3322222 2211112246689999875
No 470
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=38.69 E-value=1.1e+02 Score=21.91 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH---HHHHHhCC---CCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE---ELYKMLNH---EDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~---~~~~~~~~---~~~~~~piilv~nK~D~~~ 94 (126)
+...+.+.|||..-... ....+..||.+|+.+... ..++..+.. .+..+... .. .+..+-++.|+.|...
T Consensus 233 ~~YD~IiIDtpP~l~~~--t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~-~~~~l~il~t~~~~~~ 308 (388)
T PRK13705 233 HDYDVIVIDSAPNLGIG--TINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKG-FEPDVRILLTKYSNSN 308 (388)
T ss_pred ccCCEEEEECCCchhHH--HHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhcc-CCCCeEEEEEEecCCC
Confidence 34678999999875443 333455789999987643 334433332 22332221 01 1122346888887543
No 471
>KOG4530|consensus
Probab=37.65 E-value=1.1e+02 Score=19.36 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=28.7
Q ss_pred HHHHhhccCCcEEEEEEE---CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 38 AAWSTYYTNTEFVILVID---STDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 38 ~~~~~~~~~~~~~l~v~d---~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
..|...+..+|.++||-- -.=+..+.++.+|+.. .+.+.|.++|-.
T Consensus 78 ~aw~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPalivSy 126 (199)
T KOG4530|consen 78 EAWRQKILEADSIVFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIVSY 126 (199)
T ss_pred HHHHHHHhhcceEEEecccccCCCchHHHHHHHHhhh-----hhcCCceEEEEe
Confidence 357777889999999842 2223455555555432 257888777643
No 472
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=36.58 E-value=83 Score=17.82 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=26.7
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 42 TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 42 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
..++.||++|..+|...+++-....--+... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a------lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYA------LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHH------TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHH------CCCEEEEEEcCCcc
Confidence 3478899999999874433322221112222 46899998877654
No 473
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.87 E-value=1.2e+02 Score=19.29 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=21.1
Q ss_pred hHHHHHhhccCCcEEEEEEECCCcccHHHHH
Q psy6566 36 LRAAWSTYYTNTEFVILVIDSTDRERISLTK 66 (126)
Q Consensus 36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~ 66 (126)
++...+..+..+++.++++|-.++.+..-..
T Consensus 119 f~q~nqf~le~sdg~ll~YD~ekegs~ky~~ 149 (180)
T COG4474 119 FRQYNQFLLEKSDGALLFYDEEKEGSPKYFL 149 (180)
T ss_pred HHHhhhhhhccCceeEEEEcCcccCChHHHH
Confidence 4444555678889999999877766655443
No 474
>PRK10037 cell division protein; Provisional
Probab=34.94 E-value=62 Score=21.27 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=26.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
+...+.+.|||+... ......+..||.+++++...
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 357899999998744 34555678899999998753
No 475
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=34.33 E-value=32 Score=19.74 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=17.0
Q ss_pred EEEEEcCCCcchHHHHHhhccCCcEEEEEEE
Q psy6566 25 FIMWDLGGQQSLRAAWSTYYTNTEFVILVID 55 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d 55 (126)
+.+||.-||..-...-...-+.+-.++++..
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~ 68 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHP 68 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeC
Confidence 7789988886542222222334455555553
No 476
>KOG2733|consensus
Probab=34.25 E-value=1.4e+02 Score=21.65 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=15.5
Q ss_pred cEEEEEEECCCcccHHHHHH
Q psy6566 48 EFVILVIDSTDRERISLTKE 67 (126)
Q Consensus 48 ~~~l~v~d~~~~~~~~~~~~ 67 (126)
..+|+++|.+++.++.+..+
T Consensus 63 ~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 63 SSVILIADSANEASLDEMAK 82 (423)
T ss_pred cceEEEecCCCHHHHHHHHh
Confidence 45699999999988776643
No 477
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=33.14 E-value=1.5e+02 Score=19.86 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=35.4
Q ss_pred CCEEEEEEEcCCCcchHHHHHh-hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWST-YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~-~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
.+..+.+..+.+........+. .-+++||+|+. . ...+ .+.+. .+.+ .++|++++....+..
T Consensus 30 ~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~-s-~~~~-~~~l~----~~~~----~~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 30 HGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA-S-SEND-DEELR----RLIK----SGIPVVLIDRYIDNP 92 (279)
T ss_dssp TTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE-S-SSCT-CHHHH----HHHH----TTSEEEEESS-SCTT
T ss_pred cCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe-c-ccCC-hHHHH----HHHH----cCCCEEEEEeccCCc
Confidence 5677778888776554432222 23589999987 2 2222 22222 2222 368999888776654
No 478
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=32.82 E-value=1.9e+02 Score=20.88 Aligned_cols=71 Identities=6% Similarity=0.011 Sum_probs=40.6
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHH-------HHhCCCCCCCCe-EEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY-------KMLNHEDLSKAA-VLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~p-iilv~nK~D~ 92 (126)
+...+.+.|||+..... ....+..||.+|+.+... ..++..+.+.+. .+.+.....+.. +-++.|+.|.
T Consensus 250 ~~yD~IiIDtpP~l~~~--t~~al~aAd~viiPv~p~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~ 326 (405)
T PRK13869 250 DDYDVVVIDCPPQLGFL--TLSGLCAATSMVITVHPQ-MLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP 326 (405)
T ss_pred ccCCEEEEECCCchhHH--HHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC
Confidence 45688999999886554 333566699999988653 334444444332 121111111222 3478999885
Q ss_pred CC
Q psy6566 93 KN 94 (126)
Q Consensus 93 ~~ 94 (126)
..
T Consensus 327 ~~ 328 (405)
T PRK13869 327 QD 328 (405)
T ss_pred CC
Confidence 43
No 479
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=32.74 E-value=1.2e+02 Score=18.57 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=26.4
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 40 WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
+...++.++.++++-|+.+.........++ +.. +....++.||+-
T Consensus 36 ~~~~~~~~d~vi~~GDl~~~~~~~~~~~~l----~~~--~~~~~~v~GNHD 80 (168)
T cd07390 36 WNETVGPDDTVYHLGDFSFGGKAGTELELL----SRL--NGRKHLIKGNHD 80 (168)
T ss_pred HhhhcCCCCEEEEeCCCCCCCChHHHHHHH----HhC--CCCeEEEeCCCC
Confidence 334466789999999998765543322222 221 233466677774
No 480
>PRK13695 putative NTPase; Provisional
Probab=32.64 E-value=1.2e+02 Score=18.55 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=24.2
Q ss_pred hhccCCcEEEEEEEC---CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 42 TYYTNTEFVILVIDS---TDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 42 ~~~~~~~~~l~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
..+++++. +++|- .+... ....+.+..+++ .+.|++++.||..
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~----~~~~~i~v~h~~~ 137 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLD----SEKPVIATLHRRS 137 (174)
T ss_pred hccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHh----CCCeEEEEECchh
Confidence 34556776 57773 22212 223344555552 4679999999853
No 481
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=32.47 E-value=1e+02 Score=17.52 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=25.1
Q ss_pred hccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 43 YYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
.++.....++++|-.+.- + .....++..+.. ..+++++++|+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence 344455578888855432 2 333344444444 367899999876
No 482
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.46 E-value=1.8e+02 Score=21.26 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=35.8
Q ss_pred CCEEEEEEEcCCCcchHHH----HHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA----WSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~----~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..+.+.||+|....... ...+. ....-.++|++++.. .+.+.+....+ +. -+ .-=++.+|.|-..
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f-~~---~~-~~~~I~TKlDEt~ 340 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAY-QG---HG-IHGCIITKVDEAA 340 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHh-cC---CC-CCEEEEEeeeCCC
Confidence 5667899999997653221 12211 224567888888732 22333323333 11 12 2345778888544
No 483
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=30.83 E-value=1.5e+02 Score=18.91 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=29.8
Q ss_pred EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC---CcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST---DRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
.+.=.-.+|.-......-.++...+.-++++|.- +++.+.+....+-..++. ..++.|++++-
T Consensus 35 ~~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~-~hP~tPIllv~ 100 (178)
T PF14606_consen 35 DVINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIRE-AHPDTPILLVS 100 (178)
T ss_dssp EEEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHT-T-SSS-EEEEE
T ss_pred CeEeeeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEe
Confidence 3444456776666665555555445555555532 234455444444444443 23789988765
No 484
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=29.94 E-value=98 Score=20.11 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=17.9
Q ss_pred CCcccCCccCceE-EEEEECCEEEEE
Q psy6566 3 EVVHTSPTIGSNV-EEVIWKNIHFIM 27 (126)
Q Consensus 3 ~~~~~~pTi~~~~-~~~~~~~~~~~i 27 (126)
+|.+..|-.|+.+ -.+.++++.+.+
T Consensus 47 ~~nN~~PmTGFE~~v~~D~~GT~m~i 72 (271)
T PF06901_consen 47 SFNNPEPMTGFEHTVTFDFQGTKMVI 72 (271)
T ss_pred ccCCCCCcccceeeEEEeccceEEEe
Confidence 3557889999775 557778877664
No 485
>PRK13556 azoreductase; Provisional
Probab=29.55 E-value=1.6e+02 Score=18.85 Aligned_cols=47 Identities=4% Similarity=0.001 Sum_probs=31.6
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC------------CCCCCeEEEEEe
Q psy6566 42 TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE------------DLSKAAVLIYAN 88 (126)
Q Consensus 42 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~piilv~n 88 (126)
..++.||.+|+++-.-+-.-...++.|+..+.... .+.+.+++++..
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~t 143 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNA 143 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEe
Confidence 34788999999987766555555666777776531 135677777665
No 486
>KOG0463|consensus
Probab=28.49 E-value=2e+02 Score=21.15 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=43.1
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 50 VILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 50 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++-.+|.+-.+-+++..+++..+++.+.-..+| ++|.++-|.... +..+...+-+++|.+|..+|+
T Consensus 279 VVTKIDMCPANiLqEtmKll~rllkS~gcrK~P-vlVrs~DDVv~~----------A~NF~Ser~CPIFQvSNVtG~ 344 (641)
T KOG0463|consen 279 VVTKIDMCPANILQETMKLLTRLLKSPGCRKLP-VLVRSMDDVVHA----------AVNFPSERVCPIFQVSNVTGT 344 (641)
T ss_pred EEEeeccCcHHHHHHHHHHHHHHhcCCCcccCc-EEEecccceEEe----------eccCccccccceEEeccccCC
Confidence 344467777788888888898998886656777 456777664321 123334455677888777663
No 487
>KOG0446|consensus
Probab=28.18 E-value=9.2 Score=29.33 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=44.6
Q ss_pred CCEEEEEEEcCCC-------------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 21 KNIHFIMWDLGGQ-------------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 21 ~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
.-..+.+.|+||. +..+.+...|+...+.+++.+...+.+-. . .. ..++.+..+..+...+-+.
T Consensus 130 ~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~a-t-s~-alkiarevDp~g~RTigvi 206 (657)
T KOG0446|consen 130 LVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIA-T-SP-ALVVAREVDPGGSRTLEVI 206 (657)
T ss_pred CCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhh-c-CH-HHHHHHhhCCCccchhHHh
Confidence 5567889999983 23566888899999999998876552211 0 11 1222233333556677777
Q ss_pred ecCCCCC
Q psy6566 88 NKQDIKN 94 (126)
Q Consensus 88 nK~D~~~ 94 (126)
+|.|+..
T Consensus 207 tK~Dlmd 213 (657)
T KOG0446|consen 207 TKFDFMD 213 (657)
T ss_pred hhHHhhh
Confidence 7777654
No 488
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=27.78 E-value=1.9e+02 Score=19.16 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=30.3
Q ss_pred CCEEEEEEEcCCCcchHHHH-HhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW-STYYTNTEFVILVIDSTDRERISLTKEELYK 71 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~ 71 (126)
+...+.+.||+|........ ......+|.+++++.. ++.++..+...+..
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p-~~~si~~~~~~~~~ 162 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSG-EYMSLYAANNIARG 162 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecC-chhHHHHHHHHHHH
Confidence 45678999998754322211 1112578999999865 34566666554443
No 489
>KOG3947|consensus
Probab=27.73 E-value=2.1e+02 Score=19.83 Aligned_cols=62 Identities=10% Similarity=-0.116 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
..+.+|||-+.--.. . .+-..|..+-+.|.++....+++.+.=+.+-+.+ -...+++.+||=
T Consensus 63 r~VcisdtH~~~~~i---~-~~p~gDvlihagdfT~~g~~~ev~~fn~~~gslp--h~yKIVIaGNHE 124 (305)
T KOG3947|consen 63 RFVCISDTHELTFDI---N-DIPDGDVLIHAGDFTNLGLPEEVIKFNEWLGSLP--HEYKIVIAGNHE 124 (305)
T ss_pred EEEEecCcccccCcc---c-cCCCCceEEeccCCccccCHHHHHhhhHHhccCc--ceeeEEEeeccc
Confidence 457888887653321 2 5677888899999887555555544222222221 245788889883
No 490
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.65 E-value=3.1e+02 Score=21.64 Aligned_cols=69 Identities=7% Similarity=-0.048 Sum_probs=39.8
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+...+.|+|||..-..... ......+|++++|+... ..+...+...+..+.+. ....+-+|.|+.+...
T Consensus 639 ~~yD~IIIDtPP~~~~~Da-~~la~~ad~~llVvr~~-~t~~~~~~~~~~~l~~~---~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 639 DHYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFG-LNTAKEVSLSMQRLEQA---GVNIKGAILNGVIKRA 707 (726)
T ss_pred hcCCEEEEeCCCccccchH-HHHHHhCCeEEEEEeCC-CCCHHHHHHHHHHHHhC---CCceEEEEEeCcccCc
Confidence 4467889999865443211 12235689999998643 33444555445444322 2234468899987543
No 491
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=26.87 E-value=2.2e+02 Score=19.73 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=30.3
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 41 STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 41 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
...+...+++|+. ...+++++...++..++.. .++|+++.+--.-+.
T Consensus 67 ~~~~~~~~GvVVt---HGTDTme~tA~~Ls~~l~~---l~kPVVlTGa~~P~~ 113 (313)
T PF00710_consen 67 QAALDDYDGVVVT---HGTDTMEETAFFLSLLLDN---LDKPVVLTGAMRPLS 113 (313)
T ss_dssp HHHHTTCSEEEEE-----STTHHHHHHHHHHHEES----SSEEEEE--SS-TT
T ss_pred HHHHHhcCeEEEe---cCchHHHHHHHHHHHHhcC---CCCCEEEeCCcCCCc
Confidence 3345668998885 4456888888878777655 368999998776544
No 492
>KOG1752|consensus
Probab=26.71 E-value=1.3e+02 Score=17.16 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=23.8
Q ss_pred CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 46 NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 46 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
++...++-+|-. +.-.++.+++.++... ...|.++++.|.
T Consensus 38 ~v~~~vvELD~~--~~g~eiq~~l~~~tg~---~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 38 GVNPKVVELDED--EDGSEIQKALKKLTGQ---RTVPNVFIGGKF 77 (104)
T ss_pred CCCCEEEEccCC--CCcHHHHHHHHHhcCC---CCCCEEEECCEE
Confidence 455555555543 3333666666655433 578888887775
No 493
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=26.68 E-value=1.7e+02 Score=19.45 Aligned_cols=32 Identities=28% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566 40 WSTYYTNTEFVILVIDSTDRERISLTKEELYK 71 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~ 71 (126)
.+..-...+..-.|+|+.+.++.+++.+|+.+
T Consensus 43 ~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk 74 (245)
T COG3967 43 AEAKAENPEIHTEVCDVADRDSRRELVEWLKK 74 (245)
T ss_pred HHHHhcCcchheeeecccchhhHHHHHHHHHh
Confidence 33334456677889999999998888777653
No 494
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=26.08 E-value=67 Score=16.85 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=16.4
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHh
Q psy6566 49 FVILVIDSTDRERISLTKEELYKML 73 (126)
Q Consensus 49 ~~l~v~d~~~~~~~~~~~~~~~~~~ 73 (126)
.++++||+.+......+.+.++...
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~~g 27 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKSYG 27 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhC
Confidence 4678899877655666655555543
No 495
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=25.79 E-value=1.6e+02 Score=19.75 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCCC
Q psy6566 46 NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQDI 92 (126)
Q Consensus 46 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~ 92 (126)
.+|.+|+.-|+++..+.+...... +.++. -+.|+ ++.||+ |.
T Consensus 55 ~~D~vvitGDl~~~~~~~~~~~~~-~~l~~---l~~Pv~~v~GNH-D~ 97 (275)
T PRK11148 55 EFDLIVATGDLAQDHSSEAYQHFA-EGIAP---LRKPCVWLPGNH-DF 97 (275)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHH-HHHhh---cCCcEEEeCCCC-CC
Confidence 589999999999865554444333 33333 23564 556676 54
No 496
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=25.69 E-value=2.5e+02 Score=19.99 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=24.9
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
+...+.+.|||+..... ....+..||.+|+.+...
T Consensus 233 ~~yD~IiiD~pp~~~~~--~~~al~aad~viipv~p~ 267 (387)
T TIGR03453 233 DDYDVVVIDCPPQLGFL--TLSALCAATGVLITVHPQ 267 (387)
T ss_pred hcCCEEEEeCCccHhHH--HHHHHHHcCeeEEcCCCc
Confidence 45678999999875443 334566799999987654
No 497
>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus
Probab=25.66 E-value=89 Score=20.85 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=24.4
Q ss_pred CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 47 TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 47 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
...+.|+||+.+. ....++|..++-+|.|++..
T Consensus 169 pGRMaYvfdL~~e----------------~~~~DIPTTliRSK~Dcp~~ 201 (238)
T PF07808_consen 169 PGRMAYVFDLDDE----------------YAESDIPTTLIRSKADCPVP 201 (238)
T ss_pred CcceEEEEecCCC----------------cccccCCCeeecchhhCccc
Confidence 3558899997643 11268999999999998763
No 498
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=24.85 E-value=2.3e+02 Score=19.20 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=36.6
Q ss_pred EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCC
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQD 91 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 91 (126)
.+.+.|+++.-...... ++-.++.+++|... ++.++.++-..++-.... ... ... .++.|+.+
T Consensus 114 D~iliD~~aGl~~~~~~--~~~~sd~~viVt~p-e~~si~~A~~~i~~~~~~-~~~-~~~~~vV~N~v~ 177 (262)
T COG0455 114 DYILIDTGAGLSRDTLS--FILSSDELVIVTTP-EPTSITDAYKTIKILSKL-GLD-LLGRRVVLNRVR 177 (262)
T ss_pred CEEEEeCCCCccHHHHH--HHHhcCcEEEEeCC-CcchHHHHHHHHHHHHHc-CCc-cccceEEEEecc
Confidence 68899998775554433 34445888888753 455666554433333222 111 111 48999997
No 499
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=24.81 E-value=1.8e+02 Score=19.16 Aligned_cols=49 Identities=2% Similarity=-0.170 Sum_probs=29.7
Q ss_pred HHhhccCCcEEEEEE---ECCCcccHHHHHHHHHHHhC-CCCCCCCeEEEEEe
Q psy6566 40 WSTYYTNTEFVILVI---DSTDRERISLTKEELYKMLN-HEDLSKAAVLIYAN 88 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~---d~~~~~~~~~~~~~~~~~~~-~~~~~~~piilv~n 88 (126)
+...++.+|+++++- ..+=+..+.+..+|+..--. ...+.++|+.+++.
T Consensus 84 l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~Kpvaivga 136 (219)
T TIGR02690 84 LRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQV 136 (219)
T ss_pred HHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEe
Confidence 455688999999984 23334566666666533211 01346889888764
No 500
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=23.64 E-value=2.9e+02 Score=19.92 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=38.4
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH---HHHHHhC---CCCCCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE---ELYKMLN---HEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~---~~~~~~~---~~~~~~~piilv~nK~D~~ 93 (126)
+...+.+.|||+...+.... .+..||.+++.+... ..++..+.+ .+..+.. ... .+..+-++.|+.|..
T Consensus 233 ~~YD~IlID~pPslg~lt~n--AL~AAd~vliPv~~~-~~s~~s~~~~~~~i~~~~~~~~~~~-~~~~l~il~t~~~~~ 307 (387)
T PHA02519 233 DNYDIIVIDSAPNLGTGTIN--VVCAADVIVVATPAE-LFDYVSVLQFFTMLLDLLATVDLGG-FEPVVRLLLTKYSLT 307 (387)
T ss_pred ccCCEEEEECCCCccHHHHH--HHHHhCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHhcc-cCCCeEEEEeeECCC
Confidence 45688999999887654333 455689888887543 223333322 2222221 111 122344788988854
Done!