Query psy6566
Match_columns 126
No_of_seqs 106 out of 1237
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 21:24:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.1E-29 7.1E-34 160.5 3.7 119 2-126 36-161 (216)
2 1r8s_A ADP-ribosylation factor 100.0 1.3E-26 4.4E-31 141.1 15.2 124 3-126 24-147 (164)
3 1fzq_A ADP-ribosylation factor 99.9 1.6E-26 5.6E-31 143.3 14.8 124 3-126 40-163 (181)
4 1upt_A ARL1, ADP-ribosylation 99.9 7.8E-26 2.7E-30 138.4 15.2 125 2-126 30-154 (171)
5 2b6h_A ADP-ribosylation factor 99.9 4.6E-26 1.6E-30 142.5 12.7 125 2-126 52-176 (192)
6 1ksh_A ARF-like protein 2; sma 99.9 1.9E-25 6.5E-30 138.7 14.9 123 4-126 43-165 (186)
7 2x77_A ADP-ribosylation factor 99.9 7.6E-26 2.6E-30 140.9 12.7 125 2-126 45-169 (189)
8 1zj6_A ADP-ribosylation factor 99.9 8.4E-26 2.9E-30 140.5 12.8 125 2-126 39-163 (187)
9 2h17_A ADP-ribosylation factor 99.9 1.1E-25 3.8E-30 139.4 13.1 124 3-126 45-168 (181)
10 1m2o_B GTP-binding protein SAR 99.9 2.7E-25 9.3E-30 138.8 14.9 124 3-126 47-177 (190)
11 1f6b_A SAR1; gtpases, N-termin 99.9 1.5E-25 5.1E-30 140.8 12.3 124 3-126 49-184 (198)
12 1zd9_A ADP-ribosylation factor 99.9 6.5E-25 2.2E-29 136.7 15.1 121 6-126 50-170 (188)
13 1moz_A ARL1, ADP-ribosylation 99.9 4.8E-25 1.6E-29 136.4 12.6 124 3-126 42-165 (183)
14 4bas_A ADP-ribosylation factor 99.9 3.7E-25 1.2E-29 138.5 11.1 121 6-126 46-174 (199)
15 2h57_A ADP-ribosylation factor 99.9 1.8E-24 6.2E-29 134.8 13.0 122 5-126 49-172 (190)
16 3lvq_E ARF-GAP with SH3 domain 99.9 6.2E-24 2.1E-28 149.3 14.2 124 3-126 346-469 (497)
17 3o47_A ADP-ribosylation factor 99.9 3.8E-24 1.3E-28 143.7 11.8 124 3-126 189-312 (329)
18 1cip_A Protein (guanine nucleo 99.9 6.1E-24 2.1E-28 143.6 8.0 119 7-125 177-328 (353)
19 3ohm_A Guanine nucleotide-bind 99.9 3.6E-23 1.2E-27 138.3 9.4 119 7-125 151-302 (327)
20 3r7w_B Gtpase2, GTP-binding pr 99.9 1.2E-23 4.1E-28 140.3 6.9 117 6-125 30-159 (331)
21 1zcb_A G alpha I/13; GTP-bindi 99.9 8.7E-23 3E-27 138.4 9.4 119 7-125 185-337 (362)
22 4fid_A G protein alpha subunit 99.9 3.4E-23 1.2E-27 138.9 7.1 88 7-94 145-242 (340)
23 1azs_C GS-alpha; complex (lyas 99.9 1.9E-23 6.4E-28 142.9 5.4 86 8-93 202-297 (402)
24 2hup_A RAS-related protein RAB 99.9 5.7E-23 2E-27 129.2 6.5 115 6-126 57-178 (201)
25 3t1o_A Gliding protein MGLA; G 99.9 1.9E-22 6.5E-27 125.8 8.2 113 7-126 53-177 (198)
26 3q72_A GTP-binding protein RAD 99.9 1.2E-22 4E-27 123.8 6.2 116 6-126 29-149 (166)
27 2fu5_C RAS-related protein RAB 99.9 3.8E-23 1.3E-27 127.9 4.0 115 6-126 36-156 (183)
28 1ek0_A Protein (GTP-binding pr 99.9 8.7E-23 3E-27 124.5 5.4 120 6-126 31-154 (170)
29 3t5g_A GTP-binding protein RHE 99.9 1.2E-22 4.2E-27 125.4 5.6 115 6-125 34-153 (181)
30 2ew1_A RAS-related protein RAB 99.9 1.1E-22 3.7E-27 128.2 5.0 115 6-126 54-174 (201)
31 2efe_B Small GTP-binding prote 99.9 4.8E-22 1.6E-26 122.5 7.5 115 6-126 40-160 (181)
32 1x3s_A RAS-related protein RAB 99.9 4.1E-22 1.4E-26 124.1 7.0 116 6-126 43-163 (195)
33 1z06_A RAS-related protein RAB 99.9 2E-22 7E-27 125.3 5.3 115 6-125 48-169 (189)
34 1r2q_A RAS-related protein RAB 99.9 3.1E-22 1.1E-26 122.0 5.8 115 6-126 34-154 (170)
35 3q3j_B RHO-related GTP-binding 99.9 1.2E-22 4E-27 129.0 4.0 113 6-125 55-186 (214)
36 1zbd_A Rabphilin-3A; G protein 99.9 6.7E-22 2.3E-26 124.2 7.2 115 6-126 36-156 (203)
37 3tkl_A RAS-related protein RAB 99.9 7.3E-22 2.5E-26 123.2 7.0 115 6-126 44-164 (196)
38 2fg5_A RAB-22B, RAS-related pr 99.9 5.5E-22 1.9E-26 123.8 6.4 115 6-126 51-171 (192)
39 3ihw_A Centg3; RAS, centaurin, 99.9 7.4E-21 2.5E-25 118.1 11.4 111 6-126 48-165 (184)
40 2bme_A RAB4A, RAS-related prot 99.9 6.5E-22 2.2E-26 122.5 6.5 115 6-126 38-158 (186)
41 2yc2_C IFT27, small RAB-relate 99.9 4.4E-22 1.5E-26 125.2 5.8 116 6-126 50-177 (208)
42 3cbq_A GTP-binding protein REM 99.9 5.3E-22 1.8E-26 124.4 5.6 115 7-126 52-173 (195)
43 3oes_A GTPase rhebl1; small GT 99.9 2.5E-22 8.7E-27 126.1 4.1 115 6-125 52-171 (201)
44 1c1y_A RAS-related protein RAP 99.9 1.9E-22 6.6E-27 122.7 3.4 116 6-126 31-152 (167)
45 2nzj_A GTP-binding protein REM 99.9 5.7E-22 2E-26 121.5 5.4 117 5-126 30-154 (175)
46 3kkq_A RAS-related protein M-R 99.9 2.5E-22 8.7E-27 124.1 3.8 115 6-125 46-166 (183)
47 2g6b_A RAS-related protein RAB 99.9 4.1E-22 1.4E-26 122.7 4.8 115 6-126 39-159 (180)
48 1z0j_A RAB-22, RAS-related pro 99.9 9.4E-22 3.2E-26 120.0 6.1 115 6-126 34-154 (170)
49 1z0f_A RAB14, member RAS oncog 99.9 6.9E-22 2.3E-26 121.5 5.5 115 6-126 43-163 (179)
50 2xtz_A Guanine nucleotide-bind 99.9 2.1E-22 7.2E-27 136.1 3.3 85 9-93 163-263 (354)
51 3bc1_A RAS-related protein RAB 99.9 7.5E-22 2.6E-26 122.7 5.6 116 6-126 39-170 (195)
52 2f7s_A C25KG, RAS-related prot 99.9 2.8E-22 9.4E-27 127.2 3.6 116 6-126 53-184 (217)
53 2g3y_A GTP-binding protein GEM 99.8 8.4E-22 2.9E-26 125.0 5.8 118 4-126 64-188 (211)
54 1u8z_A RAS-related protein RAL 99.8 3.6E-22 1.2E-26 121.4 3.9 116 6-126 32-152 (168)
55 2bcg_Y Protein YP2, GTP-bindin 99.8 6E-22 2.1E-26 124.7 5.1 115 6-126 36-156 (206)
56 1kao_A RAP2A; GTP-binding prot 99.8 3.1E-22 1.1E-26 121.6 3.6 115 6-125 31-150 (167)
57 2bov_A RAla, RAS-related prote 99.8 9.8E-22 3.3E-26 123.5 5.9 116 6-126 42-162 (206)
58 2hxs_A RAB-26, RAS-related pro 99.8 3.2E-22 1.1E-26 123.0 3.5 116 6-126 34-158 (178)
59 2oil_A CATX-8, RAS-related pro 99.8 1E-21 3.6E-26 122.4 5.8 115 6-126 53-173 (193)
60 3dz8_A RAS-related protein RAB 99.8 1.3E-22 4.6E-27 126.4 1.5 115 6-126 51-171 (191)
61 2a5j_A RAS-related protein RAB 99.8 4.4E-22 1.5E-26 124.1 3.9 115 6-126 49-169 (191)
62 2iwr_A Centaurin gamma 1; ANK 99.8 3.4E-21 1.2E-25 118.6 7.8 115 3-126 31-154 (178)
63 1z08_A RAS-related protein RAB 99.8 5.4E-22 1.8E-26 121.1 3.9 115 6-126 34-154 (170)
64 3cpj_B GTP-binding protein YPT 99.8 4.7E-22 1.6E-26 126.8 3.7 115 6-126 41-161 (223)
65 3tw8_B RAS-related protein RAB 99.8 5.1E-22 1.8E-26 122.2 3.7 114 6-126 37-156 (181)
66 3q85_A GTP-binding protein REM 99.8 3.8E-22 1.3E-26 121.8 3.0 113 9-126 35-152 (169)
67 2fh5_B SR-beta, signal recogni 99.8 3.3E-20 1.1E-24 117.3 11.9 95 3-97 31-132 (214)
68 2gf9_A RAS-related protein RAB 99.8 7.6E-22 2.6E-26 122.8 4.1 115 6-126 50-170 (189)
69 2a9k_A RAS-related protein RAL 99.8 1.1E-21 3.8E-26 121.3 4.7 116 6-126 46-166 (187)
70 2fn4_A P23, RAS-related protei 99.8 4.5E-22 1.5E-26 122.5 2.9 116 6-126 37-157 (181)
71 3reg_A RHO-like small GTPase; 99.8 5.8E-22 2E-26 123.8 3.4 115 6-126 51-173 (194)
72 1wms_A RAB-9, RAB9, RAS-relate 99.8 4.7E-21 1.6E-25 117.7 7.2 117 6-126 35-159 (177)
73 2il1_A RAB12; G-protein, GDP, 99.8 1.3E-21 4.3E-26 122.2 4.7 115 6-126 54-175 (192)
74 2atx_A Small GTP binding prote 99.8 7.8E-22 2.7E-26 123.1 3.7 88 6-95 46-137 (194)
75 2zej_A Dardarin, leucine-rich 99.8 4.7E-22 1.6E-26 123.4 2.5 118 6-125 32-161 (184)
76 4dsu_A GTPase KRAS, isoform 2B 99.8 1.3E-21 4.4E-26 121.3 4.5 116 6-126 32-151 (189)
77 4djt_A GTP-binding nuclear pro 99.8 3.5E-21 1.2E-25 122.2 6.1 115 6-126 39-160 (218)
78 2j0v_A RAC-like GTP-binding pr 99.8 1E-21 3.5E-26 124.2 3.6 114 6-126 37-165 (212)
79 2o52_A RAS-related protein RAB 99.8 5E-22 1.7E-26 124.8 2.0 115 6-126 53-173 (200)
80 3gj0_A GTP-binding nuclear pro 99.8 3.7E-21 1.3E-25 122.4 6.0 114 6-126 43-160 (221)
81 2y8e_A RAB-protein 6, GH09086P 99.8 9.7E-22 3.3E-26 120.8 3.1 115 6-126 42-162 (179)
82 3c5c_A RAS-like protein 12; GD 99.8 6E-22 2E-26 123.3 2.2 114 6-125 49-170 (187)
83 2p5s_A RAS and EF-hand domain 99.8 1E-21 3.5E-26 123.2 3.1 115 6-126 56-182 (199)
84 2atv_A RERG, RAS-like estrogen 99.8 1E-21 3.4E-26 122.9 2.8 115 6-126 56-175 (196)
85 3l0i_B RAS-related protein RAB 99.8 6.7E-22 2.3E-26 124.0 1.4 116 6-125 61-180 (199)
86 1z2a_A RAS-related protein RAB 99.8 6.5E-22 2.2E-26 120.5 1.2 114 6-126 33-152 (168)
87 1g16_A RAS-related protein SEC 99.8 1E-21 3.5E-26 119.8 2.1 115 6-126 31-150 (170)
88 3clv_A RAB5 protein, putative; 99.8 1.8E-20 6E-25 117.3 7.6 96 23-126 93-189 (208)
89 1ky3_A GTP-binding protein YPT 99.8 5.3E-21 1.8E-25 117.8 4.7 117 6-126 36-163 (182)
90 3cph_A RAS-related protein SEC 99.8 4.8E-21 1.6E-25 120.9 4.5 115 6-126 48-167 (213)
91 1m7b_A RND3/RHOE small GTP-bin 99.8 3.5E-20 1.2E-24 114.8 7.5 87 6-94 35-125 (184)
92 2erx_A GTP-binding protein DI- 99.8 3.2E-21 1.1E-25 117.7 2.7 116 6-126 31-152 (172)
93 2q3h_A RAS homolog gene family 99.8 1.8E-21 6.2E-26 122.1 1.5 87 6-94 48-138 (201)
94 1vg8_A RAS-related protein RAB 99.8 7.1E-21 2.4E-25 119.7 4.0 117 6-126 36-160 (207)
95 3r7w_A Gtpase1, GTP-binding pr 99.8 5.2E-20 1.8E-24 122.6 8.4 120 6-125 34-166 (307)
96 2j1l_A RHO-related GTP-binding 99.8 6E-21 2E-25 121.0 3.6 119 6-126 62-194 (214)
97 2gco_A H9, RHO-related GTP-bin 99.8 9.1E-21 3.1E-25 119.1 4.3 119 6-126 53-185 (201)
98 1gwn_A RHO-related GTP-binding 99.8 4E-21 1.4E-25 121.3 2.7 87 6-94 56-146 (205)
99 1mh1_A RAC1; GTP-binding, GTPa 99.8 3.6E-21 1.2E-25 119.0 2.0 119 6-126 33-165 (186)
100 3bwd_D RAC-like GTP-binding pr 99.8 1.4E-21 4.7E-26 120.6 -0.0 119 6-126 36-166 (182)
101 2gf0_A GTP-binding protein DI- 99.8 9.4E-21 3.2E-25 118.4 3.5 116 6-126 36-156 (199)
102 2ce2_X GTPase HRAS; signaling 99.8 2.1E-20 7.2E-25 113.3 4.8 116 6-126 31-150 (166)
103 3con_A GTPase NRAS; structural 99.8 2.7E-20 9.3E-25 115.7 5.4 116 6-126 49-168 (190)
104 4gzl_A RAS-related C3 botulinu 99.8 2.9E-20 9.8E-25 117.1 5.0 119 6-126 58-190 (204)
105 3llu_A RAS-related GTP-binding 99.8 2.9E-20 9.9E-25 116.4 4.8 102 21-124 67-181 (196)
106 2cjw_A GTP-binding protein GEM 99.8 1.8E-20 6.1E-25 117.1 3.1 117 5-126 34-157 (192)
107 2fv8_A H6, RHO-related GTP-bin 99.8 3E-19 1E-23 112.6 8.5 119 6-126 53-185 (207)
108 3th5_A RAS-related C3 botulinu 99.7 5.8E-21 2E-25 120.1 0.0 119 6-126 58-190 (204)
109 2wkq_A NPH1-1, RAS-related C3 99.7 3.8E-19 1.3E-23 118.9 2.7 119 6-126 183-315 (332)
110 1u0l_A Probable GTPase ENGC; p 99.7 5.1E-19 1.8E-23 117.5 3.1 112 5-126 45-158 (301)
111 3l82_B F-box only protein 4; T 99.7 4.9E-18 1.7E-22 106.4 7.2 95 30-126 109-208 (227)
112 2lkc_A Translation initiation 99.7 2.8E-17 9.5E-22 100.8 10.0 114 6-125 36-155 (178)
113 1nrj_B SR-beta, signal recogni 99.7 1.3E-19 4.3E-24 115.0 -2.0 115 6-125 43-168 (218)
114 2gj8_A MNME, tRNA modification 99.7 1E-17 3.4E-22 102.9 6.1 105 10-126 39-151 (172)
115 2qu8_A Putative nucleolar GTP- 99.7 5.6E-17 1.9E-21 103.6 9.3 114 10-126 63-190 (228)
116 2dyk_A GTP-binding protein; GT 99.7 7.1E-17 2.4E-21 97.5 7.0 102 12-126 38-147 (161)
117 2f9l_A RAB11B, member RAS onco 99.7 1.4E-17 4.9E-22 104.3 3.7 115 6-126 33-153 (199)
118 1svi_A GTP-binding protein YSX 99.7 1.5E-16 5E-21 99.0 7.0 115 6-126 51-180 (195)
119 2wji_A Ferrous iron transport 99.7 4.4E-17 1.5E-21 99.3 3.4 105 7-126 32-150 (165)
120 3l2o_B F-box only protein 4; s 99.7 8.9E-17 3E-21 105.1 4.7 95 30-126 194-293 (312)
121 3c5h_A Glucocorticoid receptor 99.6 7.8E-18 2.7E-22 109.5 -0.8 101 21-126 93-240 (255)
122 3pqc_A Probable GTP-binding pr 99.6 1.8E-16 6.2E-21 98.4 5.3 116 4-126 48-179 (195)
123 1oix_A RAS-related protein RAB 99.6 6.2E-17 2.1E-21 100.9 2.8 115 6-126 57-177 (191)
124 3dpu_A RAB family protein; roc 99.6 1.2E-16 4.2E-21 113.3 2.5 111 6-126 69-193 (535)
125 1zun_B Sulfate adenylate trans 99.6 5.9E-15 2E-19 102.4 10.8 112 10-126 91-209 (434)
126 1jny_A EF-1-alpha, elongation 99.6 1.1E-15 3.8E-20 106.0 6.7 115 8-126 69-198 (435)
127 1wf3_A GTP-binding protein; GT 99.6 2.1E-14 7.1E-19 95.4 11.7 100 17-125 49-157 (301)
128 2hjg_A GTP-binding protein ENG 99.6 8E-16 2.8E-20 106.7 5.1 112 10-126 210-334 (436)
129 3j2k_7 ERF3, eukaryotic polype 99.6 5.4E-15 1.8E-19 102.7 9.1 114 9-126 81-210 (439)
130 3p26_A Elongation factor 1 alp 99.6 5.1E-15 1.8E-19 103.9 8.8 115 9-126 97-223 (483)
131 1xzp_A Probable tRNA modificat 99.6 1.6E-14 5.4E-19 101.2 11.1 105 9-126 277-390 (482)
132 4dcu_A GTP-binding protein ENG 99.6 6.6E-16 2.3E-20 107.7 4.1 109 13-126 233-354 (456)
133 3iev_A GTP-binding protein ERA 99.6 6E-15 2.1E-19 98.2 8.5 111 10-126 45-167 (308)
134 2ged_A SR-beta, signal recogni 99.6 3.3E-16 1.1E-20 97.4 1.8 84 21-104 89-180 (193)
135 3gee_A MNME, tRNA modification 99.6 9E-15 3.1E-19 102.4 9.2 103 10-126 268-383 (476)
136 2cxx_A Probable GTP-binding pr 99.6 1.6E-16 5.6E-21 98.3 0.1 118 6-126 29-169 (190)
137 2wjg_A FEOB, ferrous iron tran 99.6 5E-16 1.7E-20 96.1 2.1 104 7-125 36-153 (188)
138 4dhe_A Probable GTP-binding pr 99.6 1.8E-15 6.2E-20 96.0 4.0 101 21-126 77-196 (223)
139 1r5b_A Eukaryotic peptide chai 99.6 3E-16 1E-20 109.7 0.2 116 7-126 105-237 (467)
140 3iby_A Ferrous iron transport 99.6 5.1E-16 1.7E-20 101.0 1.2 100 12-126 37-152 (256)
141 3sjy_A Translation initiation 99.5 8.7E-15 3E-19 100.7 6.1 99 23-126 75-177 (403)
142 3qq5_A Small GTP-binding prote 99.5 8.6E-15 3E-19 101.1 5.9 106 9-126 68-181 (423)
143 1s0u_A EIF-2-gamma, translatio 99.5 4.4E-14 1.5E-18 97.3 9.2 99 23-126 81-183 (408)
144 2c78_A Elongation factor TU-A; 99.5 1.1E-14 3.8E-19 100.2 5.7 111 10-125 62-178 (405)
145 1f60_A Elongation factor EEF1A 99.5 8.1E-15 2.8E-19 102.3 4.8 115 8-126 70-197 (458)
146 3a1s_A Iron(II) transport prot 99.5 5.3E-15 1.8E-19 96.3 3.2 99 13-126 42-152 (258)
147 3izq_1 HBS1P, elongation facto 99.5 1.1E-14 3.7E-19 104.7 4.9 115 9-126 231-357 (611)
148 3tr5_A RF-3, peptide chain rel 99.5 1.9E-13 6.4E-18 96.8 10.9 82 9-95 68-149 (528)
149 1d2e_A Elongation factor TU (E 99.5 2.3E-14 7.9E-19 98.4 6.1 112 9-125 52-169 (397)
150 3i8s_A Ferrous iron transport 99.5 3.6E-15 1.2E-19 97.8 1.7 99 12-125 39-153 (274)
151 3cb4_D GTP-binding protein LEP 99.5 1.5E-13 5E-18 98.5 10.0 98 22-126 70-167 (599)
152 2ywe_A GTP-binding protein LEP 99.5 2E-13 6.7E-18 97.8 10.6 97 23-126 73-169 (600)
153 1wb1_A Translation elongation 99.5 1.3E-14 4.6E-19 101.7 4.5 114 8-126 58-174 (482)
154 2elf_A Protein translation elo 99.5 2.9E-14 1E-18 97.1 6.0 110 6-124 43-160 (370)
155 1lnz_A SPO0B-associated GTP-bi 99.5 1.4E-14 4.8E-19 97.7 4.2 112 9-126 191-315 (342)
156 2hjg_A GTP-binding protein ENG 99.5 3E-14 1E-18 98.9 5.8 106 8-126 32-150 (436)
157 1mky_A Probable GTP-binding pr 99.5 1.5E-13 5E-18 95.5 8.9 103 12-126 38-151 (439)
158 3k53_A Ferrous iron transport 99.5 1.4E-14 4.9E-19 94.8 2.9 106 7-126 32-151 (271)
159 1kk1_A EIF2gamma; initiation o 99.5 7.8E-14 2.7E-18 96.1 5.9 99 23-126 83-185 (410)
160 3b1v_A Ferrous iron uptake tra 99.5 6.2E-15 2.1E-19 96.6 0.2 103 9-126 34-149 (272)
161 2e87_A Hypothetical protein PH 99.5 2.6E-13 8.9E-18 92.0 7.9 111 9-126 200-321 (357)
162 3geh_A MNME, tRNA modification 99.4 2.9E-13 9.8E-18 94.5 7.9 100 13-126 262-369 (462)
163 1zo1_I IF2, translation initia 99.4 2.5E-14 8.5E-19 100.5 2.0 108 10-126 38-152 (501)
164 3izy_P Translation initiation 99.4 1E-14 3.5E-19 103.2 0.0 111 11-126 39-153 (537)
165 1mky_A Probable GTP-binding pr 99.4 2.2E-13 7.7E-18 94.6 5.6 109 13-126 218-340 (439)
166 3avx_A Elongation factor TS, e 99.4 3.9E-13 1.3E-17 101.6 6.9 104 17-125 353-462 (1289)
167 1g7s_A Translation initiation 99.4 3.4E-13 1.2E-17 96.6 5.9 63 24-94 71-136 (594)
168 2qtf_A Protein HFLX, GTP-bindi 99.4 2.3E-12 8E-17 87.6 8.4 116 7-126 210-339 (364)
169 2h5e_A Peptide chain release f 99.4 4.1E-12 1.4E-16 90.1 9.6 82 10-96 69-150 (529)
170 4dcu_A GTP-binding protein ENG 99.4 7.4E-13 2.5E-17 92.4 5.3 94 21-126 69-170 (456)
171 1dar_A EF-G, elongation factor 99.3 1.2E-11 4.3E-16 90.0 11.2 85 6-95 60-144 (691)
172 2qag_A Septin-2, protein NEDD5 99.3 1.1E-13 3.8E-18 94.0 0.2 110 8-125 76-218 (361)
173 1ega_A Protein (GTP-binding pr 99.3 3.8E-12 1.3E-16 84.5 7.4 101 17-126 50-160 (301)
174 3mca_A HBS1, elongation factor 99.3 3.2E-14 1.1E-18 102.0 -3.3 114 9-126 241-368 (592)
175 3t5d_A Septin-7; GTP-binding p 99.3 2.3E-12 7.9E-17 84.4 4.9 112 8-125 46-188 (274)
176 2aka_B Dynamin-1; fusion prote 99.3 9.2E-12 3.2E-16 82.2 7.8 100 22-126 124-238 (299)
177 2xex_A Elongation factor G; GT 99.3 1.9E-11 6.4E-16 89.2 9.7 84 7-95 59-142 (693)
178 2yv5_A YJEQ protein; hydrolase 99.3 1.2E-12 4.1E-17 87.0 2.0 89 32-126 65-154 (302)
179 2rdo_7 EF-G, elongation factor 99.2 1.2E-10 4.1E-15 85.0 11.2 83 8-95 60-149 (704)
180 1n0u_A EF-2, elongation factor 99.2 3.1E-11 1.1E-15 89.6 7.9 80 9-93 68-163 (842)
181 2xtp_A GTPase IMAP family memb 99.2 9.2E-11 3.1E-15 76.1 9.2 84 10-95 58-154 (260)
182 3def_A T7I23.11 protein; chlor 99.2 3.9E-11 1.3E-15 78.1 7.2 83 10-93 71-164 (262)
183 2dy1_A Elongation factor G; tr 99.2 2.9E-10 1E-14 82.6 11.2 79 10-93 61-139 (665)
184 3lxw_A GTPase IMAP family memb 99.1 3.1E-10 1.1E-14 73.3 8.9 86 9-95 56-154 (247)
185 3t34_A Dynamin-related protein 99.1 2.7E-11 9.4E-16 82.1 4.0 97 21-125 134-245 (360)
186 3lxx_A GTPase IMAP family memb 99.1 3.2E-10 1.1E-14 72.7 8.2 84 10-95 65-160 (239)
187 1jwy_B Dynamin A GTPase domain 99.1 2.7E-10 9.1E-15 75.7 8.0 71 21-95 129-213 (315)
188 3vqt_A RF-3, peptide chain rel 99.0 2.3E-09 7.7E-14 76.4 9.9 81 10-95 87-167 (548)
189 1h65_A Chloroplast outer envel 99.0 2.9E-09 9.8E-14 69.5 8.2 79 15-94 79-168 (270)
190 2j69_A Bacterial dynamin-like 98.9 7.8E-10 2.7E-14 80.7 4.9 68 23-94 174-244 (695)
191 1pui_A ENGB, probable GTP-bind 98.9 3.6E-09 1.2E-13 66.2 6.2 114 6-125 54-183 (210)
192 2qpt_A EH domain-containing pr 98.9 1.7E-09 5.7E-14 77.2 4.7 68 24-95 155-233 (550)
193 2x2e_A Dynamin-1; nitration, h 98.9 2.9E-09 9.8E-14 72.1 5.4 98 22-125 129-242 (353)
194 1udx_A The GTP-binding protein 98.8 1.4E-08 4.8E-13 70.1 7.8 111 10-126 191-310 (416)
195 3h2y_A GTPase family protein; 98.8 7.6E-10 2.6E-14 75.4 1.3 88 31-126 54-145 (368)
196 1wxq_A GTP-binding protein; st 98.8 1.2E-09 4.2E-14 75.0 1.5 37 23-59 71-114 (397)
197 3ec1_A YQEH GTPase; atnos1, at 98.7 1.6E-09 5.5E-14 73.8 1.0 89 30-126 55-147 (369)
198 3p32_A Probable GTPase RV1496/ 98.7 6.1E-10 2.1E-14 75.5 -1.1 94 21-126 170-269 (355)
199 1yrb_A ATP(GTP)binding protein 98.7 1.6E-09 5.4E-14 70.2 0.3 68 23-94 109-185 (262)
200 4fn5_A EF-G 1, elongation fact 98.7 2.3E-07 8E-12 68.0 10.4 69 22-95 84-152 (709)
201 3j25_A Tetracycline resistance 98.7 1.7E-08 5.9E-13 73.1 4.1 82 10-96 54-135 (638)
202 3zvr_A Dynamin-1; hydrolase, D 98.6 2.2E-07 7.6E-12 68.4 9.0 101 21-126 148-263 (772)
203 1jal_A YCHF protein; nucleotid 98.6 2.6E-07 8.8E-12 62.8 8.6 50 9-58 35-108 (363)
204 1puj_A YLQF, conserved hypothe 98.6 4E-08 1.4E-12 64.7 3.4 87 27-125 3-90 (282)
205 2p67_A LAO/AO transport system 98.5 1.7E-08 5.7E-13 68.1 1.1 94 21-126 147-246 (341)
206 2qnr_A Septin-2, protein NEDD5 98.5 1.7E-08 6E-13 66.9 0.5 108 9-125 58-199 (301)
207 2qag_C Septin-7; cell cycle, c 98.4 9.4E-08 3.2E-12 66.1 2.2 94 23-125 88-211 (418)
208 2www_A Methylmalonic aciduria 98.3 2.8E-07 9.4E-12 62.4 2.6 94 21-126 165-264 (349)
209 2wsm_A Hydrogenase expression/ 98.2 1E-07 3.4E-12 60.1 -0.8 90 22-126 108-199 (221)
210 2dby_A GTP-binding protein; GD 98.1 4.5E-06 1.5E-10 56.9 5.0 37 22-58 68-111 (368)
211 4a9a_A Ribosome-interacting GT 98.1 1.9E-05 6.4E-10 54.0 7.8 84 8-93 104-195 (376)
212 1t9h_A YLOQ, probable GTPase E 97.9 4.7E-06 1.6E-10 55.4 2.9 78 40-125 80-161 (307)
213 3cnl_A YLQF, putative uncharac 97.7 5.1E-06 1.7E-10 54.1 -0.4 82 30-126 4-86 (262)
214 2ohf_A Protein OLA1, GTP-bindi 97.6 5.8E-05 2E-09 51.9 4.3 52 8-59 54-129 (396)
215 2qm8_A GTPase/ATPase; G protei 97.6 0.00011 3.8E-09 49.5 4.8 62 21-94 146-207 (337)
216 2rcn_A Probable GTPase ENGC; Y 97.3 0.00022 7.7E-09 48.4 3.8 76 43-125 127-203 (358)
217 2j37_W Signal recognition part 96.7 0.0056 1.9E-07 43.4 6.9 67 21-95 182-255 (504)
218 2hf9_A Probable hydrogenase ni 96.1 0.00073 2.5E-08 42.4 -0.7 43 81-126 165-209 (226)
219 1ni3_A YCHF GTPase, YCHF GTP-b 95.1 0.056 1.9E-06 37.2 5.8 49 10-58 55-127 (392)
220 4dzz_A Plasmid partitioning pr 95.0 0.088 3E-06 32.2 6.2 69 21-93 74-143 (206)
221 2v3c_C SRP54, signal recogniti 94.8 0.21 7E-06 34.8 7.9 66 21-94 179-252 (432)
222 3ea0_A ATPase, para family; al 94.6 0.46 1.6E-05 29.8 9.1 81 22-106 118-198 (245)
223 3end_A Light-independent proto 94.1 0.29 9.8E-06 32.1 7.2 70 21-92 155-225 (307)
224 3dm5_A SRP54, signal recogniti 93.9 0.14 4.9E-06 35.8 5.7 67 21-94 181-253 (443)
225 1j8m_F SRP54, signal recogniti 93.8 0.18 6.1E-06 33.3 5.8 66 21-94 179-253 (297)
226 2ph1_A Nucleotide-binding prot 92.8 0.77 2.6E-05 29.3 7.6 67 21-92 127-194 (262)
227 3k9g_A PF-32 protein; ssgcid, 92.6 0.82 2.8E-05 29.2 7.5 66 21-91 143-208 (267)
228 3cwq_A Para family chromosome 91.7 0.71 2.4E-05 28.5 6.2 68 21-94 66-134 (209)
229 3kl4_A SRP54, signal recogniti 91.6 0.86 2.9E-05 31.8 7.0 67 21-94 178-252 (433)
230 1g3q_A MIND ATPase, cell divis 89.7 2.4 8.3E-05 26.3 9.0 79 21-105 110-189 (237)
231 3q9l_A Septum site-determining 89.4 1.1 3.6E-05 28.4 5.6 68 22-92 113-185 (260)
232 1wcv_1 SOJ, segregation protei 88.9 1.6 5.4E-05 27.8 6.2 70 21-94 110-183 (257)
233 3la6_A Tyrosine-protein kinase 88.8 3.3 0.00011 27.0 7.7 67 23-94 202-268 (286)
234 3kjh_A CO dehydrogenase/acetyl 88.7 0.76 2.6E-05 28.7 4.5 65 21-91 130-194 (254)
235 2xxa_A Signal recognition part 88.4 1.8 6.1E-05 30.2 6.5 66 21-94 182-254 (433)
236 1hyq_A MIND, cell division inh 87.8 1.4 4.6E-05 28.0 5.3 68 21-94 109-176 (263)
237 3bfv_A CAPA1, CAPB2, membrane 87.7 2.2 7.5E-05 27.6 6.3 67 22-94 191-258 (271)
238 3ec1_A YQEH GTPase; atnos1, at 87.4 0.049 1.7E-06 37.1 -1.7 65 25-94 214-288 (369)
239 3szr_A Interferon-induced GTP- 85.7 1.3 4.3E-05 32.3 4.7 71 21-95 145-229 (608)
240 2oze_A ORF delta'; para, walke 80.5 9.3 0.00032 24.6 7.6 71 21-94 153-226 (298)
241 1cp2_A CP2, nitrogenase iron p 80.3 4.2 0.00014 25.8 5.2 71 21-92 114-186 (269)
242 2ffh_A Protein (FFH); SRP54, s 78.4 4.5 0.00015 28.2 5.1 67 21-94 179-251 (425)
243 2qag_B Septin-6, protein NEDD5 76.5 0.86 2.9E-05 31.8 1.1 16 79-94 175-190 (427)
244 2afh_E Nitrogenase iron protei 74.8 5.8 0.0002 25.6 4.7 70 22-92 118-189 (289)
245 3cio_A ETK, tyrosine-protein k 74.5 14 0.00049 24.1 6.5 66 23-94 214-280 (299)
246 3sop_A Neuronal-specific septi 72.3 8.7 0.0003 24.8 5.0 43 46-94 111-154 (270)
247 3u7r_A NADPH-dependent FMN red 71.4 9.2 0.00032 23.4 4.7 51 40-90 61-114 (190)
248 2xj4_A MIPZ; replication, cell 71.3 1.7 5.9E-05 28.1 1.5 34 22-57 103-136 (286)
249 1zu4_A FTSY; GTPase, signal re 70.1 14 0.00047 24.6 5.7 67 21-94 190-268 (320)
250 1vma_A Cell division protein F 66.7 22 0.00075 23.5 6.1 67 21-94 185-263 (306)
251 1bif_A 6-phosphofructo-2-kinas 61.4 6.7 0.00023 27.4 3.0 45 23-68 87-141 (469)
252 2yhs_A FTSY, cell division pro 59.0 22 0.00076 25.4 5.2 66 21-93 374-451 (503)
253 1uf3_A Hypothetical protein TT 56.8 30 0.001 20.9 5.4 62 25-92 9-75 (228)
254 3ez9_A Para; DNA binding, wing 53.7 35 0.0012 23.2 5.5 35 21-57 246-280 (403)
255 1ls1_A Signal recognition part 52.5 34 0.0012 22.3 5.1 67 21-94 179-251 (295)
256 3fwy_A Light-independent proto 46.0 62 0.0021 21.4 7.6 71 21-93 162-233 (314)
257 1wls_A L-asparaginase; structu 45.7 64 0.0022 21.6 5.6 47 41-93 68-114 (328)
258 3hyn_A Putative signal transdu 44.2 54 0.0019 20.2 5.1 58 28-89 60-118 (189)
259 2yvt_A Hypothetical protein AQ 43.8 56 0.0019 20.2 6.1 37 25-61 9-47 (260)
260 3gv0_A Transcriptional regulat 41.8 60 0.002 20.4 5.0 60 21-91 39-100 (288)
261 3qk7_A Transcriptional regulat 39.9 70 0.0024 20.2 5.5 59 21-90 39-98 (294)
262 2him_A L-asparaginase 1; hydro 39.2 68 0.0023 21.8 5.0 46 42-93 97-142 (358)
263 3e70_C DPA, signal recognition 38.7 57 0.002 21.7 4.6 65 22-93 211-281 (328)
264 3pg5_A Uncharacterized protein 37.6 86 0.0029 21.0 5.4 41 22-65 153-193 (361)
265 2q62_A ARSH; alpha/beta, flavo 36.1 83 0.0028 20.0 6.6 49 41-89 93-145 (247)
266 3fvw_A Putative NAD(P)H-depend 34.3 76 0.0026 19.0 5.1 52 40-91 61-121 (192)
267 1rtt_A Conserved hypothetical 33.9 70 0.0024 19.0 4.1 47 43-89 69-117 (193)
268 2p62_A Hypothetical protein PH 32.8 98 0.0034 19.8 6.2 62 12-76 47-115 (241)
269 1s2d_A Purine trans deoxyribos 32.3 81 0.0028 18.8 4.6 39 43-87 78-116 (167)
270 1f8y_A Nucleoside 2-deoxyribos 31.5 76 0.0026 18.7 3.9 42 43-90 75-116 (157)
271 2px0_A Flagellar biosynthesis 30.0 1.2E+02 0.004 19.8 6.7 67 21-94 181-253 (296)
272 3ez2_A Plasmid partition prote 27.2 1.3E+02 0.0043 20.3 4.9 35 21-57 243-277 (398)
273 1zq1_A Glutamyl-tRNA(Gln) amid 26.8 1.2E+02 0.0042 21.3 4.7 42 46-93 168-209 (438)
274 1byi_A Dethiobiotin synthase; 26.4 1.1E+02 0.0038 18.4 5.2 68 21-93 107-180 (224)
275 4hs4_A Chromate reductase; tri 26.3 1.1E+02 0.0039 18.5 6.0 49 41-89 68-118 (199)
276 3ehd_A Uncharacterized conserv 26.1 1.1E+02 0.0037 18.2 4.0 42 43-90 66-107 (162)
277 3hcw_A Maltose operon transcri 25.5 1.1E+02 0.0037 19.3 4.2 60 21-91 41-102 (295)
278 3k1y_A Oxidoreductase; structu 25.5 1.2E+02 0.004 18.4 5.2 47 41-88 80-126 (191)
279 3h16_A TIR protein; bacteria T 24.9 57 0.002 18.8 2.5 60 31-91 58-117 (154)
280 3exc_X Uncharacterized protein 24.7 86 0.003 16.6 3.0 24 49-72 5-28 (91)
281 3k4h_A Putative transcriptiona 24.6 99 0.0034 19.3 3.8 60 21-91 42-103 (292)
282 3rl5_A Metallophosphoesterase 23.8 1.4E+02 0.0049 19.6 4.5 59 25-92 63-122 (296)
283 3jy6_A Transcriptional regulat 23.6 1.4E+02 0.0047 18.5 5.4 59 21-91 36-96 (276)
284 1zpw_X Hypothetical protein TT 23.2 84 0.0029 16.5 2.7 24 49-72 5-28 (90)
285 2ark_A Flavodoxin; FMN, struct 22.4 1.3E+02 0.0044 17.7 7.3 63 22-90 34-98 (188)
286 1d4a_A DT-diaphorase, quinone 22.2 1.6E+02 0.0055 18.8 4.7 47 44-90 91-149 (273)
287 1tq4_A IIGP1, interferon-induc 21.9 1.4E+02 0.0048 20.7 4.3 63 24-93 121-188 (413)
288 3fkq_A NTRC-like two-domain pr 21.7 1.9E+02 0.0064 19.4 5.2 49 21-72 258-309 (373)
289 3ha2_A NADPH-quinone reductase 21.0 1.4E+02 0.0049 17.7 8.5 65 25-90 31-102 (177)
290 4e6n_A Metallophosphoesterase; 20.6 1.5E+02 0.0051 20.7 4.0 25 51-75 299-323 (427)
291 2vzf_A NADH-dependent FMN redu 20.6 1.5E+02 0.005 17.7 6.5 45 43-88 66-110 (197)
292 1nns_A L-asparaginase II; amid 20.1 2E+02 0.0069 19.1 5.2 44 43-93 76-119 (326)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=2.1e-29 Score=160.50 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=87.3
Q ss_pred CCCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 2 NEVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 2 ~~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
|.|. .|.||+|... +.+.+ ..+.+++|||+|+++|..+++.|+++++++++|||++++++|+.+..|+..+.+..
T Consensus 36 ~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~ 115 (216)
T 4dkx_A 36 DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER 115 (216)
T ss_dssp SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc
Confidence 4555 7899999554 44455 45789999999999999999999999999999999999999999999998876543
Q ss_pred CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
. +++|+++||||+|+... .+.++ +..+++..+++|++|||++|.
T Consensus 116 ~-~~~piilVgNK~Dl~~~r~V~~~e-----~~~~a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 116 G-SDVIIMLVGNKTDLADKRQVSIEE-----GERKAKELNVMFIETSAKAGY 161 (216)
T ss_dssp T-TSSEEEEEEECTTCGGGCCSCHHH-----HHHHHHHHTCEEEEEBTTTTB
T ss_pred C-CCCeEEEEeeccchHhcCcccHHH-----HhhHHHHhCCeeEEEeCCCCc
Confidence 2 67999999999999653 22222 223334456789999999884
No 2
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=1.3e-26 Score=141.13 Aligned_cols=124 Identities=48% Similarity=0.882 Sum_probs=108.0
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
++..+.||+++....+..++..+.+|||||++.+...+..+++.+|++++|+|+++++++.....|+..++......+.|
T Consensus 24 ~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 103 (164)
T 1r8s_A 24 EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 103 (164)
T ss_dssp CSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred CcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe
Confidence 45678899998888888899999999999999999999999999999999999999999999999998887765456899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.+....+++...+........+++++++||++|.
T Consensus 104 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 104 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred EEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 99999999998766667777777766666678899999999873
No 3
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=1.6e-26 Score=143.31 Aligned_cols=124 Identities=44% Similarity=0.783 Sum_probs=106.8
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+..+.||+|+....+.+++..+.+|||+|++.++..+..+++.++++++|+|+++++++..+..|+..+++.....+.|
T Consensus 40 ~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 119 (181)
T 1fzq_A 40 DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 119 (181)
T ss_dssp CCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC
T ss_pred CCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC
Confidence 34568899998888888999999999999999999999999999999999999999999999999888887764446899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.+....+++.+.+........++++++|||++|+
T Consensus 120 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 120 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 99999999998766666677766655555677899999999874
No 4
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=7.8e-26 Score=138.41 Aligned_cols=125 Identities=48% Similarity=0.838 Sum_probs=109.0
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+++..+.||+++....+.+++..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+++.....+.
T Consensus 30 ~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 109 (171)
T 1upt_A 30 GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA 109 (171)
T ss_dssp SSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred CCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC
Confidence 35567899999988899999999999999999999999999999999999999999999999999999888876544689
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......++...+........+++++++||++|+
T Consensus 110 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (171)
T 1upt_A 110 ILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT 154 (171)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred EEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCc
Confidence 999999999998766667777777666666778899999999874
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.94 E-value=4.6e-26 Score=142.51 Aligned_cols=125 Identities=45% Similarity=0.826 Sum_probs=104.1
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+++..+.||+++....+..++..+.+|||||++.+...+..+++.++++++|+|+++++++..+..|+..+++.....+.
T Consensus 52 ~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~ 131 (192)
T 2b6h_A 52 GEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA 131 (192)
T ss_dssp SCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred CCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence 45567789999888888889999999999999999999999999999999999999999999999999888776545689
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+....+++...+........+++++++||++|.
T Consensus 132 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 132 VLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred eEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 999999999998766667777777766666678899999999873
No 6
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.94 E-value=1.9e-25 Score=138.67 Aligned_cols=123 Identities=41% Similarity=0.746 Sum_probs=106.7
Q ss_pred CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
...+.||+++....+.+++..+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+++.....+.|+
T Consensus 43 ~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 122 (186)
T 1ksh_A 43 VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122 (186)
T ss_dssp CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE
T ss_pred CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcE
Confidence 45788999988888989999999999999999999999999999999999999999999999999988887644468999
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++++||+|+......+++.+.+........+++++++||++|.
T Consensus 123 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 123 LIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp EEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 9999999998766666676666655555678899999999874
No 7
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.94 E-value=7.6e-26 Score=140.86 Aligned_cols=125 Identities=44% Similarity=0.828 Sum_probs=109.2
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+++..+.||+++....+.+++..+.+|||||++.+...+..+++.+|++++|+|+++++++.....|+..++......+.
T Consensus 45 ~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 124 (189)
T 2x77_A 45 GDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS 124 (189)
T ss_dssp SCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred CCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence 45567889999988889999999999999999999999999999999999999999999999999999888876555789
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+....+++...+........+++++++||++|+
T Consensus 125 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (189)
T 2x77_A 125 LLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGD 169 (189)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred eEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCcc
Confidence 999999999998766667777777666666778899999999874
No 8
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=8.4e-26 Score=140.52 Aligned_cols=125 Identities=74% Similarity=1.202 Sum_probs=103.1
Q ss_pred CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+++..+.||+|+....+.+++..+.+|||+|++.+...+..+++.+|++++|+|++++++++.+..|+..+.+.....+.
T Consensus 39 ~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 118 (187)
T 1zj6_A 39 NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA 118 (187)
T ss_dssp TSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred CCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCC
Confidence 34557889999888899999999999999999999999999999999999999999999999999999888876434679
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+....+++.+.+........+++++++||++|+
T Consensus 119 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 119 GLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred eEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 999999999998766666776666554445667899999999873
No 9
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=1.1e-25 Score=139.39 Aligned_cols=124 Identities=73% Similarity=1.201 Sum_probs=107.6
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
++..+.||+|+....+.+++..+.+|||+|++.+...+..+++.+|++++|+|+++++++..+..|+..+++.....++|
T Consensus 45 ~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 124 (181)
T 2h17_A 45 EVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 124 (181)
T ss_dssp SCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE
T ss_pred CCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe
Confidence 44578899998888899999999999999999999999999999999999999999999999999998888764346899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+......+++.+.+........+++++++||++|.
T Consensus 125 iilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 125 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999998766667777776655556678899999999873
No 10
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=2.7e-25 Score=138.79 Aligned_cols=124 Identities=26% Similarity=0.467 Sum_probs=105.0
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+..+.||++.....+.+++..+.+|||||++.++..+..+++.++++++|+|++++++++++..|+..+++.....+.|
T Consensus 47 ~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 126 (190)
T 1m2o_B 47 RLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP 126 (190)
T ss_dssp CCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC
T ss_pred CCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC
Confidence 45678899999888999999999999999999999999999999999999999999999999999998887764446899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCc-------ccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTS-------IKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+......+++.+.+.... ....++++++|||++|+
T Consensus 127 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 177 (190)
T 1m2o_B 127 FVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN 177 (190)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTB
T ss_pred EEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCC
Confidence 999999999987666666666554332 23456899999999874
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=1.5e-25 Score=140.82 Aligned_cols=124 Identities=24% Similarity=0.491 Sum_probs=95.6
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+..+.||++.....+.+++..+.+|||||++.++..+..+++.++++++|+|+++++++..+..|+..+++.....++|
T Consensus 49 ~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 128 (198)
T 1f6b_A 49 RLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP 128 (198)
T ss_dssp ------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC
T ss_pred CCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc
Confidence 45578899998888899988999999999999999999999999999999999999999999999999888764446899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCc---------c---cCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTS---------I---KKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~---------~---~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+......+++.+.+.... . ....+++++|||++|+
T Consensus 129 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 184 (198)
T 1f6b_A 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQ 184 (198)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTB
T ss_pred EEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCC
Confidence 999999999987656666655544221 1 1256789999999874
No 12
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.93 E-value=6.5e-25 Score=136.69 Aligned_cols=121 Identities=26% Similarity=0.545 Sum_probs=105.3
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
.+.||++.....+..++..+.+|||+|++.+...+..+++.++++++|+|+++++++..+..|+..+++.....++|+++
T Consensus 50 ~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil 129 (188)
T 1zd9_A 50 DMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129 (188)
T ss_dssp SCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEE
T ss_pred ccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 67899998888888899999999999999999999999999999999999999999999999998887764446899999
Q ss_pred EEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.......++...+........+++++++||++|.
T Consensus 130 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 130 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 99999998765666677766655555678899999999874
No 13
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=4.8e-25 Score=136.37 Aligned_cols=124 Identities=48% Similarity=0.812 Sum_probs=103.5
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
++..+.||+|+....+.+++..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+++.....+.|
T Consensus 42 ~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 121 (183)
T 1moz_A 42 EVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 121 (183)
T ss_dssp EEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE
T ss_pred CcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe
Confidence 44578899998888899999999999999999999999999999999999999999999999999998887764457899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.+....+++.+.+........+++++++||++|+
T Consensus 122 iilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 122 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred EEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999998766667777776655555677899999999873
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.93 E-value=3.7e-25 Score=138.52 Aligned_cols=121 Identities=36% Similarity=0.660 Sum_probs=103.6
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC-------
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL------- 78 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~------- 78 (126)
.+.||+|+....+...+..+.+|||+|++.+..++..+++.+|++++|+|+++++++..+..|+..+++....
T Consensus 46 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 125 (199)
T 4bas_A 46 HITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGG 125 (199)
T ss_dssp CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTS
T ss_pred ccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhccccc
Confidence 5689999888888889999999999999999999999999999999999999999999999999888765221
Q ss_pred CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++|+||+|+......+++...+..... +..++++++|||++|+
T Consensus 126 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 174 (199)
T 4bas_A 126 GRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGT 174 (199)
T ss_dssp CBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTB
T ss_pred CCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCcc
Confidence 27899999999999887666677766664443 5678899999999873
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=134.76 Aligned_cols=122 Identities=39% Similarity=0.717 Sum_probs=103.7
Q ss_pred cccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC--CCCe
Q psy6566 5 VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL--SKAA 82 (126)
Q Consensus 5 ~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p 82 (126)
..+.||+++....+.+++..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+++.... .+.|
T Consensus 49 ~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p 128 (190)
T 2h57_A 49 QNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP 128 (190)
T ss_dssp SSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC
T ss_pred CCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe
Confidence 36889999888888889999999999999999999999999999999999999999999999998888776544 5789
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+......+++............+++++++||++|.
T Consensus 129 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 129 ILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 99999999998766666666655433334567899999999873
No 16
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=6.2e-24 Score=149.30 Aligned_cols=124 Identities=44% Similarity=0.850 Sum_probs=111.0
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
++..+.||+++....+.++++.+.+|||+|++.++.++..+++.+|++++|+|+++++++..+..|+..+++.....++|
T Consensus 346 ~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 425 (497)
T 3lvq_E 346 QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 425 (497)
T ss_dssp SCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE
T ss_pred CCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999998765556899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+......+++...+.........+++++|||++|+
T Consensus 426 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 426 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp EEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 99999999998876777788877777777788899999999874
No 17
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=143.70 Aligned_cols=124 Identities=48% Similarity=0.882 Sum_probs=105.2
Q ss_pred CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+....||++.....+..+++.+.+|||+|++.+..++..+++.++++++|+|++++.++..+..++..++.....+++|
T Consensus 189 ~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 268 (329)
T 3o47_A 189 EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268 (329)
T ss_dssp CCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE
T ss_pred CCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe
Confidence 45556699999998899999999999999999999999999999999999999999999999999998888776556899
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++|+||+|+.+.....++...+........+++++++||++|.
T Consensus 269 iilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 99999999998876777788888777777788999999999873
No 18
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=6.1e-24 Score=143.62 Aligned_cols=119 Identities=20% Similarity=0.366 Sum_probs=96.0
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~ 76 (126)
+.||+|+....+.++++.+++||||||++++.+|..|+++++++|||+|+++ .+++.+...|+..+....
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 4678999988999999999999999999999999999999999999999998 578999999999998876
Q ss_pred CCCCCeEEEEEecCCCCC-----------------CCCHHHHHhhcCc---Ccc---cCCceEEEEeeeeeC
Q psy6566 77 DLSKAAVLIYANKQDIKN-----------------SMSPVEISNLLDL---TSI---KKQQWHIQSCCALTG 125 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~-----------------~~~~~~v~~~~~~---~~~---~~~~~~~~~~Sa~~~ 125 (126)
...+.|+++++||+|+.. ..+.++....... ... ..+++.+++|||++|
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~ 328 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 328 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence 667899999999999842 1223333222211 000 246789999999986
No 19
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=3.6e-23 Score=138.30 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=95.9
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST----------DRERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~ 76 (126)
..||+|+....+.++++.+++|||+||++++.+|.+|+++++++++|+|++ +.+++.+...|+..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 578999999999999999999999999999999999999999999999554 6789999999999998877
Q ss_pred CCCCCeEEEEEecCCCCCC------------------CCHHHHHhhc-----CcCcccCCceEEEEeeeeeC
Q psy6566 77 DLSKAAVLIYANKQDIKNS------------------MSPVEISNLL-----DLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~------------------~~~~~v~~~~-----~~~~~~~~~~~~~~~Sa~~~ 125 (126)
...+.|+++++||+|+..+ .+.++....+ .......+++.++++||+++
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~ 302 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 302 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC
Confidence 6678999999999997531 1223322221 11223456788999999875
No 20
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=1.2e-23 Score=140.28 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=84.7
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHH---HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--CCCCC
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRA---AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDLSK 80 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~ 80 (126)
.+.||+|+....+. ..+++++||||||++|+. .++.|+++++++++|+|++++ +.+...||...+.. ...++
T Consensus 30 ~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ 106 (331)
T 3r7w_B 30 YLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPS 106 (331)
T ss_dssp TCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTT
T ss_pred eecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCC
Confidence 36899998877652 458999999999999964 468899999999999999987 33344444333221 11268
Q ss_pred CeEEEEEecCCCCCCCC----HHHHHhhcCcCcccC----CceEEEEeeeeeC
Q psy6566 81 AAVLIYANKQDIKNSMS----PVEISNLLDLTSIKK----QQWHIQSCCALTG 125 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~----~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~ 125 (126)
+|+++++||+|+..+.. .+++....+..+++. .+++|+++||++.
T Consensus 107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd~ 159 (331)
T 3r7w_B 107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH 159 (331)
T ss_dssp CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSSS
T ss_pred CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCCC
Confidence 99999999999976421 134555555555543 6899999999863
No 21
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=8.7e-23 Score=138.40 Aligned_cols=119 Identities=19% Similarity=0.362 Sum_probs=87.9
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~ 76 (126)
+.||+|+....+.++++.+++||||||+.++..|..++++++++|||+|+++ .+++.++..|+..+....
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 4578898888899999999999999999999999999999999999999998 789999999999998876
Q ss_pred CCCCCeEEEEEecCCCCCC------------------CCHHHHHhhc-----CcCccc-CCceEEEEeeeeeC
Q psy6566 77 DLSKAAVLIYANKQDIKNS------------------MSPVEISNLL-----DLTSIK-KQQWHIQSCCALTG 125 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~------------------~~~~~v~~~~-----~~~~~~-~~~~~~~~~Sa~~~ 125 (126)
...+.|+++++||+|+..+ .+.++..... ...... .+++.+++|||++|
T Consensus 265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~ 337 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT 337 (362)
T ss_dssp GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc
Confidence 6678999999999998521 2333333322 111111 45678999999986
No 22
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.88 E-value=3.4e-23 Score=138.95 Aligned_cols=88 Identities=26% Similarity=0.478 Sum_probs=81.5
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST----------DRERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~ 76 (126)
+.||+|+....+.++++.+++|||+||++++.+|..|+++++++|+|+|++ +.+++.+...|+..++...
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 568899999999999999999999999999999999999999999999998 6789999999999998877
Q ss_pred CCCCCeEEEEEecCCCCC
Q psy6566 77 DLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~ 94 (126)
...+.|+++++||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 667899999999999753
No 23
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.88 E-value=1.9e-23 Score=142.89 Aligned_cols=86 Identities=24% Similarity=0.430 Sum_probs=79.2
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCCC
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHED 77 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 77 (126)
.||+|+....+.++++.+++|||+||++++.+|..|+++++++|+|+|+++ .+++.++..|+..+.....
T Consensus 202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 457888888888999999999999999999999999999999999999999 8999999999999988766
Q ss_pred CCCCeEEEEEecCCCC
Q psy6566 78 LSKAAVLIYANKQDIK 93 (126)
Q Consensus 78 ~~~~piilv~nK~D~~ 93 (126)
..++|+++++||+|+.
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 6789999999999974
No 24
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.88 E-value=5.7e-23 Score=129.24 Aligned_cols=115 Identities=21% Similarity=0.294 Sum_probs=84.0
Q ss_pred ccCCccCc--eEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGS--NVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++. ....+.+++ +.+.+|||+|++++..++..+++.++++++|+|++++.+++.+..|+..+.+.. ..++
T Consensus 57 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~ 135 (201)
T 2hup_A 57 RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNI 135 (201)
T ss_dssp --------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 67799884 456666655 799999999999999999999999999999999999999999988887775543 2679
Q ss_pred eEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
|+++++||+|+.. ....+++... ++..++ +++++||++|+
T Consensus 136 piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 136 VQLLIGNKSDLSELREVSLAEAQSL-----AEHYDILCAIETSAKDSS 178 (201)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCSEEEECBTTTTB
T ss_pred CEEEEEECCccccccccCHHHHHHH-----HHHcCCCEEEEEeCCCCC
Confidence 9999999999965 2233333221 223455 89999999873
No 25
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=1.9e-22 Score=125.77 Aligned_cols=113 Identities=17% Similarity=0.223 Sum_probs=88.3
Q ss_pred cCCccCceEEEEEE-----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC------CcccHHHHHHHHHHHhCC
Q psy6566 7 TSPTIGSNVEEVIW-----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST------DRERISLTKEELYKMLNH 75 (126)
Q Consensus 7 ~~pTi~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~------~~~~~~~~~~~~~~~~~~ 75 (126)
+.||++.......+ +.+.+.+|||+|++.+...+..+++.++++++|+|++ +.++++.+..|+..+..
T Consensus 53 ~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~- 131 (198)
T 3t1o_A 53 DERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL- 131 (198)
T ss_dssp SCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-
Confidence 56788866554332 4578999999999999999999999999999999999 55677778777776622
Q ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 76 EDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
...++|+++++||+|+.+....+++..... ..++ +++++||++|+
T Consensus 132 -~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 177 (198)
T 3t1o_A 132 -TLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----PEGKFPVLEAVATEGK 177 (198)
T ss_dssp -CTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----TTCCSCEEECBGGGTB
T ss_pred -ccCCCCEEEEEEchhcccccCHHHHHHHHH-----hcCCceEEEEecCCCc
Confidence 237899999999999987665555544433 4456 89999999874
No 26
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=1.2e-22 Score=123.77 Aligned_cols=116 Identities=13% Similarity=0.121 Sum_probs=69.2
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||.+... ..+.+ ....+.+|||+|++.+...+..+++.++++++|+|++++++++.+..|+..+.+.....++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 108 (166)
T 3q72_A 29 PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP 108 (166)
T ss_dssp -------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC
T ss_pred CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4557777443 34555 45689999999999999999999999999999999999999999999998887765457899
Q ss_pred EEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.+.. ..++.. ......+++++++||++|+
T Consensus 109 ~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 149 (166)
T 3q72_A 109 IILVGNKSDLVRSREVSVDEGR-----ACAVVFDCKFIETSAALHH 149 (166)
T ss_dssp EEEEEECTTCCSSCCSCHHHHH-----HHHHHTTCEEEECBGGGTB
T ss_pred EEEEEeccccccccccCHHHHH-----HHHHHhCCcEEEeccCCCC
Confidence 99999999997532 222221 1222345689999999874
No 27
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.87 E-value=3.8e-23 Score=127.87 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=76.2
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..++
T Consensus 36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 114 (183)
T 2fu5_C 36 TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADV 114 (183)
T ss_dssp CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 567888844 45666655 889999999999999999999999999999999999999999988887775532 2578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... +.+..+++++++||++|+
T Consensus 115 piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 156 (183)
T 2fu5_C 115 EKMILGNKCDVNDKRQVSKERGEK-----LALDYGIKFMETSAKANI 156 (183)
T ss_dssp EEEEEEEC--CCSCCCSCHHHHHH-----HHHHHTCEEEECCC---C
T ss_pred CEEEEEECccCCccCcCCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence 99999999999753 22233222 122335689999999874
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=8.7e-23 Score=124.50 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=88.9
Q ss_pred ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+. ...+.+|||||++.+...+..+++.++++++|+|++++.++..+..|+..+.... ..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 109 (170)
T 1ek0_A 31 NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDI 109 (170)
T ss_dssp TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCC
Confidence 677999854 4556663 4689999999999999999999999999999999999999999988887776543 2679
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......++............+++++++||++|.
T Consensus 110 piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154 (170)
T ss_dssp EEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred cEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999986431101111111111222345689999999874
No 29
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=1.2e-22 Score=125.39 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=87.7
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.+++ +.+.+|||+|++.+...+..+++.++++++|+|++++++++.+..|+..+.+.....++|
T Consensus 34 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 113 (181)
T 3t5g_A 34 SYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP 113 (181)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC
T ss_pred CCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 7789999554 4455555 678999999999999899999999999999999999999999999888876654446899
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+++++||+|+... ...++... +.+..+++++++||++|
T Consensus 114 ~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~ 153 (181)
T 3t5g_A 114 IMLVGNKKDLHMERVISYEEGKA-----LAESWNAAFLESSAKEN 153 (181)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCEEEECCTTSH
T ss_pred EEEEEECccchhcceecHHHHHH-----HHHHhCCcEEEEecCCC
Confidence 9999999998653 22222221 22334568999999986
No 30
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-22 Score=128.16 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=88.3
Q ss_pred ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+++ +.+.+|||+|++++...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus 54 ~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~ 132 (201)
T 2ew1_A 54 GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKV 132 (201)
T ss_dssp TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 6779998554 5566654 689999999999999999999999999999999999999999888877665432 2578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... ++...+++++++||++|+
T Consensus 133 piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 133 ITVLVGNKIDLAERREVSQQRAEE-----FSEAQDMYYLETSAKESD 174 (201)
T ss_dssp EEEEEEECGGGGGGCSSCHHHHHH-----HHHHHTCCEEECCTTTCT
T ss_pred CEEEEEECCCCccccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence 99999999998642 22222221 122335679999999874
No 31
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=4.8e-22 Score=122.55 Aligned_cols=115 Identities=17% Similarity=0.324 Sum_probs=89.2
Q ss_pred ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+. ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... .++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 118 (181)
T 2efe_B 40 FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNM 118 (181)
T ss_dssp TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 567888844 4555553 4689999999999999999999999999999999999999999988887776543 2589
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...+++... .+..+++++++||++|+
T Consensus 119 p~i~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~ 160 (181)
T 2efe_B 119 VMALAGNKSDLLDARKVTAEDAQTY-----AQENGLFFMETSAKTAT 160 (181)
T ss_dssp EEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEECCSSSCT
T ss_pred cEEEEEECCcccccccCCHHHHHHH-----HHHcCCEEEEEECCCCC
Confidence 99999999999653 223333222 22345689999999874
No 32
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.1e-22 Score=124.15 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=90.3
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ ....+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......++
T Consensus 43 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 122 (195)
T 1x3s_A 43 ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI 122 (195)
T ss_dssp TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCC
T ss_pred cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCC
Confidence 6788988554 45555 3478999999999999999999999999999999999999999999888887665444679
Q ss_pred eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+... +....+++++++||++|.
T Consensus 123 p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 123 VNMLVGNKIDKENREVDRNEGLK-----FARKHSMLFIEASAKTCD 163 (195)
T ss_dssp EEEEEEECTTSSSCCSCHHHHHH-----HHHHTTCEEEECCTTTCT
T ss_pred cEEEEEECCcCcccccCHHHHHH-----HHHHcCCEEEEecCCCCC
Confidence 99999999999542 22222222 222345689999999874
No 33
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.86 E-value=2e-22 Score=125.35 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=89.0
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchH-HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLR-AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
.+.||++.. ...+.+++ ..+.+|||+|++.+. .++..+++.++++++|+|++++.+++.+..|+..+.+.....+
T Consensus 48 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~ 127 (189)
T 1z06_A 48 RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND 127 (189)
T ss_dssp SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSC
T ss_pred CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 577888854 45566644 789999999999998 8899999999999999999999999999888887766543467
Q ss_pred CeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 81 AAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 81 ~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
.|+++++||+|+... ...++... +....+++++++||++|
T Consensus 128 ~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 128 IPRILVGNKCDLRSAIQVPTDLAQK-----FADTHSMPLFETSAKNP 169 (189)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCCEEECCSSSG
T ss_pred CCEEEEEECccccccceeCHHHHHH-----HHHHcCCEEEEEeCCcC
Confidence 999999999999652 22222221 12234567999999987
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.86 E-value=3.1e-22 Score=122.04 Aligned_cols=115 Identities=21% Similarity=0.326 Sum_probs=89.2
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ .+..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... .+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 112 (170)
T 1r2q_A 34 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNI 112 (170)
T ss_dssp TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 5678888554 45555 35789999999999999999999999999999999999999999988887776543 2679
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... +....+++++++||++|+
T Consensus 113 ~iilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~ 154 (170)
T 1r2q_A 113 VIALSGNKADLANKRAVDFQEAQS-----YADDNSLLFMETSAKTSM 154 (170)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCT
T ss_pred cEEEEEECccCccccccCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence 99999999998642 22223222 122346789999999874
No 35
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.86 E-value=1.2e-22 Score=129.02 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=86.2
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH-HHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL-TKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ ..+.+.+|||+|++.+..++..+++.++++++|+|++++.++.. ...|+..+.... ++.
T Consensus 55 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~ 132 (214)
T 3q3j_B 55 TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PST 132 (214)
T ss_dssp SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTS
T ss_pred CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 6789999654 33444 45789999999999999999999999999999999999999998 466666554432 689
Q ss_pred eEEEEEecCCCCCC--------------CCHHHHHhhcCcCcccCCce-EEEEeeeeeC
Q psy6566 82 AVLIYANKQDIKNS--------------MSPVEISNLLDLTSIKKQQW-HIQSCCALTG 125 (126)
Q Consensus 82 piilv~nK~D~~~~--------------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 125 (126)
|+++|+||+|+... ...++. ..++...++ ++++|||++|
T Consensus 133 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~e~SA~~g 186 (214)
T 3q3j_B 133 RVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG-----CAIAKQLGAEIYLEGSAFTS 186 (214)
T ss_dssp EEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH-----HHHHHHHTCSEEEECCTTTC
T ss_pred CEEEEEEChhhccchhhhhhhcccccCccCHHHH-----HHHHHHcCCCEEEEeccCCC
Confidence 99999999999642 222221 122233456 8999999987
No 36
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.86 E-value=6.7e-22 Score=124.19 Aligned_cols=115 Identities=19% Similarity=0.283 Sum_probs=88.2
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|... ..+.+. ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus 36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 114 (203)
T 1zbd_A 36 AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA 114 (203)
T ss_dssp CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSC
T ss_pred CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 6789998554 445553 5789999999999999999999999999999999999999999988877765432 3578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... +....+++++++||++|.
T Consensus 115 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 115 QVLLVGNKCDMEDERVVSSERGRQ-----LADHLGFEFFEASAKDNI 156 (203)
T ss_dssp EEEEEEECTTCTTSCCSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred CEEEEEECcccCcccccCHHHHHH-----HHHHCCCeEEEEECCCCC
Confidence 99999999999753 22222221 112234689999999873
No 37
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=7.3e-22 Score=123.20 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=88.5
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+.+|||+|++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 122 (196)
T 3tkl_A 44 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENV 122 (196)
T ss_dssp CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 667888844 45566655 789999999999999999999999999999999999999999988877765442 2578
Q ss_pred eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ...+.. .+....+++++++||++|.
T Consensus 123 p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 123 NKLLVGNKCDLTTKKVVDYTTAK-----EFADSLGIPFLETSAKNAT 164 (196)
T ss_dssp EEEEEEECTTCTTTCCSCHHHHH-----HHHHHTTCCEEEECTTTCT
T ss_pred CEEEEEECcccccccccCHHHHH-----HHHHHcCCcEEEEeCCCCC
Confidence 999999999997542 222221 1122335679999999874
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.5e-22 Score=123.80 Aligned_cols=115 Identities=20% Similarity=0.308 Sum_probs=89.9
Q ss_pred ccCCccCceEEE--EEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVEE--VIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|..... +.+ ....+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.. ..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 129 (192)
T 2fg5_A 51 NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENI 129 (192)
T ss_dssp TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTC
T ss_pred CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence 678999966544 444 55789999999999999999999999999999999999999999988887765432 3579
Q ss_pred eEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.. ....++.... ++..+++++++||++|.
T Consensus 130 piiiv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 130 VMAIAGNKCDLSDIREVPLKDAKEY-----AESIGAIVVETSAKNAI 171 (192)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHH-----HHTTTCEEEECBTTTTB
T ss_pred cEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCc
Confidence 9999999999864 2233333222 23456789999999873
No 39
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.86 E-value=7.4e-21 Score=118.11 Aligned_cols=111 Identities=14% Similarity=0.246 Sum_probs=84.9
Q ss_pred ccCCccCceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 6 HTSPTIGSNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
.+.||.+.....+.+++ +.+.+|||+|++.+. +++.++++++|||++++.+++.+..|+..+.......+.|+
T Consensus 48 ~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 122 (184)
T 3ihw_A 48 EESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM 122 (184)
T ss_dssp CCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCE
T ss_pred CcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 57788776667777755 678889999999987 77889999999999999999999998888876644467899
Q ss_pred EEEEecCCCCC----CCCHHHHHhhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566 84 LIYANKQDIKN----SMSPVEISNLLDLTSIKKQ-QWHIQSCCALTGE 126 (126)
Q Consensus 84 ilv~nK~D~~~----~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~ 126 (126)
++++||+|+.. ....++... ++... .++++++||++|.
T Consensus 123 ilv~nK~Dl~~~~~~~v~~~~~~~-----~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 123 VLVGTQDAISAANPRVIDDSRARK-----LSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp EEEEECTTCBTTBCCCSCHHHHHH-----HHHHTTTCEEEEEBTTTTB
T ss_pred EEEEECcccccccccccCHHHHHH-----HHHHcCCCeEEEecCCCCC
Confidence 99999999842 222222222 12222 3689999999873
No 40
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=6.5e-22 Score=122.51 Aligned_cols=115 Identities=23% Similarity=0.365 Sum_probs=88.7
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... .+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 116 (186)
T 2bme_A 38 DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNI 116 (186)
T ss_dssp TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTC
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCC
Confidence 577888844 45566655 7899999999999999999999999999999999999999999888776654322 578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+... +....+++++++||++|+
T Consensus 117 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 158 (186)
T 2bme_A 117 VIILCGNKKDLDADREVTFLEASR-----FAQENELMFLETSALTGE 158 (186)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCT
T ss_pred cEEEEEECcccccccccCHHHHHH-----HHHHcCCEEEEecCCCCC
Confidence 99999999998642 22222221 223345789999999874
No 41
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.86 E-value=4.4e-22 Score=125.15 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=78.1
Q ss_pred ccCCccC--ceEEEEEEC----CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC--
Q psy6566 6 HTSPTIG--SNVEEVIWK----NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-- 77 (126)
Q Consensus 6 ~~~pTi~--~~~~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-- 77 (126)
.+.||++ +....+.+. ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.....
T Consensus 50 ~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 129 (208)
T 2yc2_C 50 DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR 129 (208)
T ss_dssp -----------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCT
T ss_pred CCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhccc
Confidence 7789998 455667774 67999999999999999999999999999999999999999999988877765432
Q ss_pred CCCCeEEEEEecCCCCC---CCCHHHHHhhcCcCcccCCceEEEEeeeee-CC
Q psy6566 78 LSKAAVLIYANKQDIKN---SMSPVEISNLLDLTSIKKQQWHIQSCCALT-GE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~-~~ 126 (126)
..++|+++++||+|+.. ....++.... .+..+++++++||++ |.
T Consensus 130 ~~~~piilv~nK~Dl~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 130 ERPLRAVLVANKTDLPPQRHQVRLDMAQDW-----ATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp TSCCEEEEEEECC-------CCCHHHHHHH-----HHHTTCEEEECCC-----
T ss_pred ccCCcEEEEEECcccchhhccCCHHHHHHH-----HHHcCCEEEEeccCCCCc
Confidence 25789999999999975 2222332222 223457899999998 63
No 42
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.85 E-value=5.3e-22 Score=124.38 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=85.8
Q ss_pred cCCccC--ceEEEEEEC--CEEEEEEEcCCCcchHH-HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 7 TSPTIG--SNVEEVIWK--NIHFIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 7 ~~pTi~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
+.||++ .....+.++ .+.+.+|||+|++.+.. ++..+++.++++++|+|++++.+++.+..|+..+.......++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 131 (195)
T 3cbq_A 52 HEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 131 (195)
T ss_dssp GTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred CCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 446655 445556664 46789999999988765 7888899999999999999999999999988877654333579
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... +++..+++++++||++|.
T Consensus 132 piilv~nK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 132 PVILVGNKSDLARSREVSLEEGRH-----LAGTLSCKHIETSAALHH 173 (195)
T ss_dssp CEEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCEEEEEBTTTTB
T ss_pred CEEEEeechhccccCCcCHHHHHH-----HHHHhCCEEEEEcCCCCC
Confidence 99999999999753 22223221 222335689999999873
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=2.5e-22 Score=126.12 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=85.9
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.+ ....+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.......++|
T Consensus 52 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 131 (201)
T 3oes_A 52 GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP 131 (201)
T ss_dssp CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC
T ss_pred CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 6778888554 33333 66889999999999999999999999999999999999999999999988887765556899
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+++++||+|+... ....+.. .+....+++++++||++|
T Consensus 132 iilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~~~Sa~~~ 171 (201)
T 3oes_A 132 VVLVGNKADLSPEREVQAVEGK-----KLAESWGATFMESSAREN 171 (201)
T ss_dssp EEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEECCTTCH
T ss_pred EEEEEECccCccccccCHHHHH-----HHHHHhCCeEEEEeCCCC
Confidence 9999999998643 2222221 112233568999999986
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=1.9e-22 Score=122.73 Aligned_cols=116 Identities=17% Similarity=0.212 Sum_probs=88.6
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.+ +...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.....+.|
T Consensus 31 ~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 110 (167)
T 1c1y_A 31 KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP 110 (167)
T ss_dssp SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC
T ss_pred CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc
Confidence 6788988544 33444 45789999999999999999999999999999999999999999888887776543336899
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKK-QQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.+. ...++.... .+. .+.+++++||++|.
T Consensus 111 iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 152 (167)
T 1c1y_A 111 MILVGNKCDLEDERVVGKEQGQNL-----ARQWCNCAFLESSAKSKI 152 (167)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHH-----HHHTTSCEEEECBTTTTB
T ss_pred EEEEEECccccccccCCHHHHHHH-----HHHccCCcEEEecCCCCC
Confidence 9999999999653 222222221 112 25689999999873
No 45
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=5.7e-22 Score=121.53 Aligned_cols=117 Identities=10% Similarity=0.088 Sum_probs=78.9
Q ss_pred cccCCccCce--EEEEEECC--EEEEEEEcCCCcc--hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 5 VHTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQS--LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 5 ~~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~--~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
....||+|.. ...+.+++ ..+.+|||+|++. +..+...+++.++++++|+|++++.+++.+..|+..+.+....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~ 109 (175)
T 2nzj_A 30 RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA 109 (175)
T ss_dssp ---CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC--
T ss_pred ccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence 3445677744 45566644 5889999999988 5667788899999999999999999999999888877665434
Q ss_pred CCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++++||+|+... ...++... +....+++++++||++|+
T Consensus 110 ~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 110 DHVPIILVGNKADLARCREVSVEEGRA-----CAVVFDCKFIETSATLQH 154 (175)
T ss_dssp --CCEEEEEECTTCTTTCCSCHHHHHH-----HHHHHTSEEEECBTTTTB
T ss_pred CCCCEEEEEEChhhccccccCHHHHHH-----HHHHcCCeEEEEecCCCC
Confidence 68999999999999753 22222211 122235689999999873
No 46
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.85 E-value=2.5e-22 Score=124.15 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=87.9
Q ss_pred ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++.. ...+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.....++|
T Consensus 46 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 125 (183)
T 3kkq_A 46 DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125 (183)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC
T ss_pred CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 678898844 44455544 567789999999999999999999999999999999999999998888776543346889
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeee-eC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCAL-TG 125 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~-~~ 125 (126)
+++++||+|+... ...++... +.+..+++++++||+ +|
T Consensus 126 ~ilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 126 MILVANKVDLMHLRKVTRDQGKE-----MATKYNIPYIETSAKDPP 166 (183)
T ss_dssp EEEEEECTTCSTTCCSCHHHHHH-----HHHHHTCCEEEEBCSSSC
T ss_pred EEEEEECCCchhccCcCHHHHHH-----HHHHhCCeEEEeccCCCC
Confidence 9999999998752 22232221 122234679999999 76
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4.1e-22 Score=122.75 Aligned_cols=115 Identities=19% Similarity=0.297 Sum_probs=80.5
Q ss_pred ccCCccCceEEE--EEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVEE--VIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~~--~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++..... +.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... .+.
T Consensus 39 ~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~ 117 (180)
T 2g6b_A 39 TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDV 117 (180)
T ss_dssp CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTC
T ss_pred CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCC
Confidence 678999966543 45544 5899999999999999999999999999999999999999988888777655332 578
Q ss_pred eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ..++... +.+..+++++++||++|.
T Consensus 118 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 118 ALMLLGNKVDSAHERVVKREDGEK-----LAKEYGLPFMETSAKTGL 159 (180)
T ss_dssp EEEEEEECCSTTSCCCSCHHHHHH-----HHHHHTCCEEECCTTTCT
T ss_pred cEEEEEECcccCcccccCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence 999999999997532 2222221 112234679999999874
No 48
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.85 E-value=9.4e-22 Score=119.98 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=88.1
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|... ..+.+. ...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+... ..++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~ 112 (170)
T 1z0j_A 34 NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSI 112 (170)
T ss_dssp TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTS
T ss_pred CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCC
Confidence 6789999554 455553 478999999999999999999999999999999999999999988877766543 23689
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... +.+..+++++++||++|.
T Consensus 113 ~iilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 113 VVAIAGNKCDLTDVREVMERDAKD-----YADSIHAIFVETSAKNAI 154 (170)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTB
T ss_pred cEEEEEECCccccccccCHHHHHH-----HHHHcCCEEEEEeCCCCc
Confidence 99999999999652 22222221 122345789999999873
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.85 E-value=6.9e-22 Score=121.49 Aligned_cols=115 Identities=23% Similarity=0.347 Sum_probs=88.4
Q ss_pred ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+. ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... .+.
T Consensus 43 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 121 (179)
T 1z0f_A 43 DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNT 121 (179)
T ss_dssp SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTC
T ss_pred CCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCC
Confidence 567888854 4555563 47899999999999999999999999999999999999999998888776654322 578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++.... .+..+++++++||++|.
T Consensus 122 piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 163 (179)
T 1z0f_A 122 VIILIGNKADLEAQRDVTYEEAKQF-----AEENGLLFLEASAKTGE 163 (179)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCT
T ss_pred cEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCC
Confidence 99999999999642 222333222 22345689999999874
No 50
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=2.1e-22 Score=136.13 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=71.6
Q ss_pred CccCceEEEEEE------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHH
Q psy6566 9 PTIGSNVEEVIW------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST----------DRERISLTKEELYKM 72 (126)
Q Consensus 9 pTi~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~ 72 (126)
+|+|+....+.+ +.+.+++|||+||++++.+|..|+++++++++|+|++ +.++++++..|+..+
T Consensus 163 ~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i 242 (354)
T 2xtz_A 163 RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 242 (354)
T ss_dssp CCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHH
T ss_pred cccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHH
Confidence 344555555666 3589999999999999999999999999999999998 788999999999999
Q ss_pred hCCCCCCCCeEEEEEecCCCC
Q psy6566 73 LNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 73 ~~~~~~~~~piilv~nK~D~~ 93 (126)
......++.|+++++||+|+.
T Consensus 243 ~~~~~~~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 243 LKQPCFEKTSFMLFLNKFDIF 263 (354)
T ss_dssp HTCGGGSSCEEEEEEECHHHH
T ss_pred HhccccCCCeEEEEEECcchh
Confidence 876555789999999999974
No 51
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=7.5e-22 Score=122.70 Aligned_cols=116 Identities=18% Similarity=0.318 Sum_probs=89.4
Q ss_pred ccCCccCceEE---EEEEC-----------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566 6 HTSPTIGSNVE---EVIWK-----------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK 71 (126)
Q Consensus 6 ~~~pTi~~~~~---~~~~~-----------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~ 71 (126)
.+.||++.... .+.+. ...+.+|||||++.+...+..+++.++++++|+|++++.++..+..|+..
T Consensus 39 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 118 (195)
T 3bc1_A 39 KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ 118 (195)
T ss_dssp SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 67899996654 44443 46999999999999999999999999999999999999999998888877
Q ss_pred HhCCCCCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 72 MLNHEDLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 72 ~~~~~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.......++|+++++||+|+... ...+++... ....+++++++||++|.
T Consensus 119 i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 170 (195)
T 3bc1_A 119 LQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL-----AEKYGIPYFETSAANGT 170 (195)
T ss_dssp HHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCCEEECCTTTCT
T ss_pred HHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCCEEEEECCCCC
Confidence 765443357899999999999652 222332221 12234579999999874
No 52
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.85 E-value=2.8e-22 Score=127.18 Aligned_cols=116 Identities=17% Similarity=0.359 Sum_probs=88.9
Q ss_pred ccCCccCceE--EEEEEC------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566 6 HTSPTIGSNV--EEVIWK------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK 71 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~ 71 (126)
.+.||++... ..+.+. ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..
T Consensus 53 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~ 132 (217)
T 2f7s_A 53 KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132 (217)
T ss_dssp EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHT
T ss_pred CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence 5678888544 445553 57899999999999999999999999999999999999999999888877
Q ss_pred HhCCCCCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 72 MLNHEDLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 72 ~~~~~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.......++|+++++||+|+... ....+.... .+..+++++++||++|+
T Consensus 133 i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~g~ 184 (217)
T 2f7s_A 133 LQANAYCENPDIVLIGNKADLPDQREVNERQAREL-----ADKYGIPYFETSAATGQ 184 (217)
T ss_dssp CCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCCEEEEBTTTTB
T ss_pred HHHhcCcCCCCEEEEEECCccccccccCHHHHHHH-----HHHCCCcEEEEECCCCC
Confidence 655443367999999999999652 222222221 22335679999999873
No 53
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=8.4e-22 Score=125.01 Aligned_cols=118 Identities=12% Similarity=0.108 Sum_probs=83.5
Q ss_pred CcccCCccCc--eEEEEEECC--EEEEEEEcCCCcc-hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 4 VVHTSPTIGS--NVEEVIWKN--IHFIMWDLGGQQS-LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 4 ~~~~~pTi~~--~~~~~~~~~--~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
|....||+|. ..+.+.+++ +.+.+|||+|++. +..+...+++.++++++|||++++++|+.+..|+..+.+....
T Consensus 64 ~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~ 143 (211)
T 2g3y_A 64 MDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT 143 (211)
T ss_dssp TCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG
T ss_pred CCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 3444456764 345666654 5678999999987 5667788899999999999999999999999888777654333
Q ss_pred CCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++|+||+|+... ...++. ..++...++++++|||++|+
T Consensus 144 ~~~piilVgNK~DL~~~r~v~~~e~-----~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 144 EDIPIILVGNKSDLVRCREVSVSEG-----RACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp TTSCEEEEEECTTCGGGCCSCHHHH-----HHHHHHHTCEEEECBTTTTB
T ss_pred CCCcEEEEEEChHHhcCceEeHHHH-----HHHHHHcCCEEEEEeCCCCC
Confidence 57999999999999642 222211 11122335689999999874
No 54
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.85 E-value=3.6e-22 Score=121.42 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=87.0
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.+.+ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.....+.|
T Consensus 32 ~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 111 (168)
T 1u8z_A 32 DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 111 (168)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred CCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6778888554 4456644 689999999999999999999999999999999999999999988888776654335799
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+... ...++.... ....+++++++||++|.
T Consensus 112 iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 112 FLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRA 152 (168)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCT
T ss_pred EEEEEECccccccCccCHHHHHHH-----HHHcCCeEEEeCCCCCC
Confidence 9999999998652 222332222 12335689999999874
No 55
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.85 E-value=6e-22 Score=124.72 Aligned_cols=115 Identities=24% Similarity=0.319 Sum_probs=88.7
Q ss_pred ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+++ +.+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.... ..+.
T Consensus 36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 114 (206)
T 2bcg_Y 36 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTV 114 (206)
T ss_dssp TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 6778888554 5566644 689999999999999999999999999999999999999999988877765432 2578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... +....+++++++||++|+
T Consensus 115 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~ 156 (206)
T 2bcg_Y 115 LKLLVGNKCDLKDKRVVEYDVAKE-----FADANKMPFLETSALDST 156 (206)
T ss_dssp EEEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCCEEECCTTTCT
T ss_pred CEEEEEECCCCccccccCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence 99999999999763 22222222 122345689999999874
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.85 E-value=3.1e-22 Score=121.60 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=88.2
Q ss_pred ccCCccCc-eEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGS-NVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++. ....+.+.+ ..+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.....+.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 110 (167)
T 1kao_A 31 KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP 110 (167)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 57788883 345666644 569999999999999999999999999999999999999999998888877654446899
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+++++||+|+... ....+... .....+++++++||++|
T Consensus 111 iilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~ 150 (167)
T 1kao_A 111 VILVGNKVDLESEREVSSSEGRA-----LAEEWGCPFMETSAKSK 150 (167)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSCEEEECTTCH
T ss_pred EEEEEECCcccccccCCHHHHHH-----HHHHhCCCEEEecCCCC
Confidence 9999999998642 22222211 11223457999999986
No 57
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=9.8e-22 Score=123.47 Aligned_cols=116 Identities=20% Similarity=0.256 Sum_probs=90.6
Q ss_pred ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++.. ...+.+++ +.+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......++|
T Consensus 42 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 121 (206)
T 2bov_A 42 DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 121 (206)
T ss_dssp TCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred CCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 678888844 35566644 589999999999999999999999999999999999999999988888877654335899
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+... ....++... ....+++++++||++|.
T Consensus 122 iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 122 FLLVGNKSDLEDKRQVSVEEAKNR-----AEQWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTTTCT
T ss_pred EEEEEeccCccccccccHHHHHHH-----HHHhCCeEEEEeCCCCC
Confidence 9999999999652 223333222 12335689999999874
No 58
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.85 E-value=3.2e-22 Score=123.04 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=86.3
Q ss_pred ccCCccC--ceEEEEEECC---EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-CC
Q psy6566 6 HTSPTIG--SNVEEVIWKN---IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-LS 79 (126)
Q Consensus 6 ~~~pTi~--~~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (126)
.+.||++ +....+.+.+ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... ..
T Consensus 34 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 113 (178)
T 2hxs_A 34 QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE 113 (178)
T ss_dssp HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccC
Confidence 5678988 4556677754 8999999999999999999999999999999999999999888877766644210 01
Q ss_pred CCe-EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAA-VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~p-iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.| +++++||+|+... ...++.... .+..+++++++||++|+
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRF-----CQENGFSSHFVSAKTGD 158 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEEECTTTCT
T ss_pred CCCeEEEEEEccccccccccCHHHHHHH-----HHHcCCcEEEEeCCCCC
Confidence 344 8999999998652 222222221 12335689999999874
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=122.43 Aligned_cols=115 Identities=22% Similarity=0.345 Sum_probs=89.1
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|... ..+.+ ....+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.... ..+.
T Consensus 53 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~ 131 (193)
T 2oil_A 53 DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATI 131 (193)
T ss_dssp SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTC
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 5778988554 44555 45789999999999999999999999999999999999999999888887776543 3679
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+... +....+++++++||++|.
T Consensus 132 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 173 (193)
T 2oil_A 132 VVMLVGNKSDLSQAREVPTEEARM-----FAENNGLLFLETSALDST 173 (193)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEECTTTCT
T ss_pred eEEEEEECCCcccccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence 99999999998652 22222222 122345789999999874
No 60
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.3e-22 Score=126.43 Aligned_cols=115 Identities=19% Similarity=0.287 Sum_probs=88.2
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ +.+.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+..|+..+... ...+.
T Consensus 51 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~ 129 (191)
T 3dz8_A 51 AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-SWDNA 129 (191)
T ss_dssp CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence 5668888444 44444 6789999999999999999999999999999999999999999998887776553 23679
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+. ....+... +....+++++++||++|.
T Consensus 130 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 130 QVILVGNKCDMEEERVVPTEKGQL-----LAEQLGFDFFEASAKENI 171 (191)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred CEEEEEECCCCccccccCHHHHHH-----HHHHcCCeEEEEECCCCC
Confidence 99999999998643 22222211 122335689999999873
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=4.4e-22 Score=124.08 Aligned_cols=115 Identities=24% Similarity=0.309 Sum_probs=84.9
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus 49 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~ 127 (191)
T 2a5j_A 49 VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNM 127 (191)
T ss_dssp -----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred CCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 567888844 45666644 789999999999999999999999999999999999999999988887775532 2579
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... ++...+++++++||++|+
T Consensus 128 piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 128 VIMLIGNKSDLESRRDVKREEGEA-----FAREHGLIFMETSAKTAC 169 (191)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEECTTTCT
T ss_pred CEEEEEECcccCCccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence 99999999999642 22222222 122345689999999874
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.85 E-value=3.4e-21 Score=118.60 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=81.4
Q ss_pred CCcccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhC--CCC
Q psy6566 3 EVVHTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLN--HED 77 (126)
Q Consensus 3 ~~~~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~--~~~ 77 (126)
.+..+.||++.. ...+.+++ +.+.+|||+|+++ ..++++++++++|+|++++++++.+..|+..+.. ...
T Consensus 31 ~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~ 105 (178)
T 2iwr_A 31 SYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEG 105 (178)
T ss_dssp CCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcC
Confidence 455688999944 45666644 6789999999987 3478889999999999999999999886433322 222
Q ss_pred CCCCeEEEEEecCCCCC----CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKN----SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+++|+++++||+|+.. ....++...... ...+++++++||++|.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 106 RGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGL 154 (178)
T ss_dssp SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTB
T ss_pred CCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccC
Confidence 35799999999999842 222233222111 1135789999999873
No 63
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=5.4e-22 Score=121.15 Aligned_cols=115 Identities=21% Similarity=0.285 Sum_probs=81.0
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ ..+.+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus 34 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~ 112 (170)
T 1z08_A 34 KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEI 112 (170)
T ss_dssp SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGS
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 6779999655 44555 34689999999999999999999999999999999999999999988877654422 2468
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... +++..+++++++||++|.
T Consensus 113 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1z08_A 113 CLCIVGNKIDLEKERHVSIQEAES-----YAESVGAKHYHTSAKQNK 154 (170)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEEBTTTTB
T ss_pred eEEEEEECcccccccccCHHHHHH-----HHHHcCCeEEEecCCCCC
Confidence 99999999998652 22233222 122345789999999873
No 64
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.7e-22 Score=126.82 Aligned_cols=115 Identities=23% Similarity=0.298 Sum_probs=81.4
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+..|+..+.... ..++
T Consensus 41 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~ 119 (223)
T 3cpj_B 41 DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNV 119 (223)
T ss_dssp ------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--C
T ss_pred CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence 567888844 45566655 789999999999999999999999999999999999999999988887765432 2578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++|+||+|+... ....+... +....+++++++||++|+
T Consensus 120 piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 120 AVGLIGNKSDLAHLRAVPTEESKT-----FAQENQLLFTETSALNSE 161 (223)
T ss_dssp EEEEEECCGGGGGGCCSCHHHHHH-----HHHHTTCEEEECCCC-CC
T ss_pred eEEEEEECcccccccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence 99999999998642 22222222 222345789999999874
No 65
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.84 E-value=5.1e-22 Score=122.25 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=88.3
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+.+ ..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~ 114 (181)
T 3tw8_B 37 SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDV 114 (181)
T ss_dssp CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTS
T ss_pred ccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence 677888844 45566666 789999999999999999999999999999999999999999988887776543 579
Q ss_pred eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ...+... +....+++++++||++|.
T Consensus 115 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 156 (181)
T 3tw8_B 115 CRILVGNKNDDPERKVVETEDAYK-----FAGQMGIQLFETSAKENV 156 (181)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCCEEECBTTTTB
T ss_pred CEEEEEECCCCchhcccCHHHHHH-----HHHHcCCeEEEEECCCCC
Confidence 999999999986532 2222211 112234579999999873
No 66
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.84 E-value=3.8e-22 Score=121.80 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=79.5
Q ss_pred CccCceEEEEEEC--CEEEEEEEcCCCcchHH-HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 9 PTIGSNVEEVIWK--NIHFIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 9 pTi~~~~~~~~~~--~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
+|.......+.++ ...+.+|||+|++.+.. ++..+++.++++++|+|++++++++.+..|+..+.......++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 114 (169)
T 3q85_A 35 NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114 (169)
T ss_dssp ---CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 4444566667774 46889999999999876 77778899999999999999999999999998887755445899999
Q ss_pred EEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 86 YANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 86 v~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++||+|+.+. ...++.. .+.+..+++++++||++|+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 152 (169)
T 3q85_A 115 VGNKSDLARSREVSLEEGR-----HLAGTLSCKHIETSAALHH 152 (169)
T ss_dssp EEECTTCGGGCCSCHHHHH-----HHHHHTTCEEEECBTTTTB
T ss_pred EeeCcchhhcccCCHHHHH-----HHHHHcCCcEEEecCccCC
Confidence 9999998642 2222222 1223346689999999873
No 67
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.84 E-value=3.3e-20 Score=117.34 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=72.5
Q ss_pred CCcccCCccCceEEEEEEC---CEEEEEEEcCCCcchHH-HHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCC--
Q psy6566 3 EVVHTSPTIGSNVEEVIWK---NIHFIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNH-- 75 (126)
Q Consensus 3 ~~~~~~pTi~~~~~~~~~~---~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~-- 75 (126)
.+....||++.....+.++ ++.+.+|||||++.+.. ++..+++.++++++|+|+++.. ++.....+|...+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 110 (214)
T 2fh5_B 31 QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM 110 (214)
T ss_dssp CCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh
Confidence 3444446666666667774 78999999999999998 8899999999999999998853 466666666665432
Q ss_pred CCCCCCeEEEEEecCCCCCCCC
Q psy6566 76 EDLSKAAVLIYANKQDIKNSMS 97 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~~~~ 97 (126)
....++|+++++||+|+.....
T Consensus 111 ~~~~~~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 111 ALKNSPSLLIACNKQDIAMAKS 132 (214)
T ss_dssp TSTTCCEEEEEEECTTSTTCCC
T ss_pred hcccCCCEEEEEECCCCCCccc
Confidence 1125789999999999986543
No 68
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=7.6e-22 Score=122.76 Aligned_cols=115 Identities=18% Similarity=0.297 Sum_probs=87.7
Q ss_pred ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ +...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus 50 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 128 (189)
T 2gf9_A 50 AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNA 128 (189)
T ss_dssp SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 6778988554 44555 35789999999999999999999999999999999999999999888877765432 3578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++... +.+..+++++++||++|.
T Consensus 129 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 129 QVILVGNKCDLEDERVVPAEDGRR-----LADDLGFEFFEASAKENI 170 (189)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred CEEEEEECcccccccCCCHHHHHH-----HHHHcCCeEEEEECCCCC
Confidence 99999999998652 22222221 112235689999999873
No 69
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.84 E-value=1.1e-21 Score=121.32 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=90.2
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.+.+ ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......++|
T Consensus 46 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 125 (187)
T 2a9k_A 46 DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 125 (187)
T ss_dssp SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred cCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 6778888544 4456644 689999999999999999999999999999999999999999988888776654335799
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+... ....+.... .+..+++++++||++|.
T Consensus 126 iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 126 FLLVGNKSDLEDKRQVSVEEAKNR-----AEQWNVNYVETSAKTRA 166 (187)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCT
T ss_pred EEEEEECccccccCccCHHHHHHH-----HHHcCCeEEEeCCCCCC
Confidence 9999999998652 222333222 22345689999999874
No 70
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.84 E-value=4.5e-22 Score=122.51 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=89.8
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+++.....+.|
T Consensus 37 ~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 116 (181)
T 2fn4_A 37 DYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP 116 (181)
T ss_dssp SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred ccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 6789998554 4455654 689999999999999999999999999999999999999999998888876543346789
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+... ....+... +....+++++++||++|.
T Consensus 117 iilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 117 VVLVGNKADLESQRQVPRSEASA-----FGASHHVAYFEASAKLRL 157 (181)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTB
T ss_pred EEEEEECcccccccccCHHHHHH-----HHHHcCCeEEEecCCCCC
Confidence 9999999998652 22222221 122346789999999873
No 71
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.84 E-value=5.8e-22 Score=123.75 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=83.8
Q ss_pred ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.++ .+.+.+|||+|++.+...+..+++.++++++|+|++++.++..+...|...++.. ..++|
T Consensus 51 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 129 (194)
T 3reg_A 51 AYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAK 129 (194)
T ss_dssp SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSE
T ss_pred ccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCC
Confidence 6789999554 344454 4667999999999999999999999999999999999999999744344433332 26799
Q ss_pred EEEEEecCCCCCC----CCHHHHHhhcCcCcccCCceE-EEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS----MSPVEISNLLDLTSIKKQQWH-IQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~ 126 (126)
+++|+||+|+... ...++... +++..++. ++++||++|+
T Consensus 130 ~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 130 TVLVGLKVDLRKDGSDDVTKQEGDD-----LCQKLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEEEEECGGGCCTTTTCCCHHHHHH-----HHHHHTCSCEEECBTTTTB
T ss_pred EEEEEEChhhccCCCCcccHHHHHH-----HHHhcCCCEEEEeecCCCC
Confidence 9999999998642 22222221 11223344 9999999874
No 72
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=4.7e-21 Score=117.70 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=85.5
Q ss_pred ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC---CC
Q psy6566 6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE---DL 78 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~---~~ 78 (126)
.+.||++... ..+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 114 (177)
T 1wms_A 35 QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEP 114 (177)
T ss_dssp ----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCT
T ss_pred CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHcccccc
Confidence 6778998554 5555654 689999999999999999999999999999999999999988887776664321 22
Q ss_pred CCCeEEEEEecCCCCC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.++|+++++||+|+.. ....++...... ....++++++||++|.
T Consensus 115 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 115 ESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp TTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred CCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 5789999999999963 233333322211 1345679999999874
No 73
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=122.23 Aligned_cols=115 Identities=20% Similarity=0.304 Sum_probs=85.1
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+... ...++
T Consensus 54 ~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~ 132 (192)
T 2il1_A 54 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDA 132 (192)
T ss_dssp ---CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence 567888844 45566644 68999999999999999999999999999999999999999888776655432 23579
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKK-QQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++.... .+. .+++++++||++|+
T Consensus 133 piilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 133 ELLLVGNKLDCETDREITRQQGEKF-----AQQITGMRFCEASAKDNF 175 (192)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHH-----HHTSTTCEEEECBTTTTB
T ss_pred cEEEEEECcccccccccCHHHHHHH-----HHhcCCCeEEEEeCCCCC
Confidence 99999999998642 222222221 122 36789999999873
No 74
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=7.8e-22 Score=123.10 Aligned_cols=88 Identities=14% Similarity=0.207 Sum_probs=72.6
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+++ +.+.+|||+|++++...+..+++.++++++|+|++++.++..+. .|+..+.... +++
T Consensus 46 ~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 123 (194)
T 2atx_A 46 EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNV 123 (194)
T ss_dssp SCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTC
T ss_pred CCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 6789998544 4555544 78999999999999999999999999999999999999999987 5655554432 579
Q ss_pred eEEEEEecCCCCCC
Q psy6566 82 AVLIYANKQDIKNS 95 (126)
Q Consensus 82 piilv~nK~D~~~~ 95 (126)
|+++++||+|+...
T Consensus 124 piilv~nK~Dl~~~ 137 (194)
T 2atx_A 124 PFLLIGTQIDLRDD 137 (194)
T ss_dssp CEEEEEECTTSTTC
T ss_pred CEEEEEEChhhccc
Confidence 99999999999753
No 75
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.84 E-value=4.7e-22 Score=123.42 Aligned_cols=118 Identities=14% Similarity=0.288 Sum_probs=81.4
Q ss_pred ccCCccCceEEEEEE-------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc-ccHHHHHHHHHHHhCCCC
Q psy6566 6 HTSPTIGSNVEEVIW-------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR-ERISLTKEELYKMLNHED 77 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~ 77 (126)
.+.||+|.......+ +.+.+.+|||+|++.+..+++.++++++++++|+|++++ .++..+..|+..+....
T Consensus 32 ~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~- 110 (184)
T 2zej_A 32 MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA- 110 (184)
T ss_dssp -----CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-
T ss_pred CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-
Confidence 578999977655443 467899999999999999999999999999999999987 47888888887765432
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce----EEEEeeeeeC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW----HIQSCCALTG 125 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~Sa~~~ 125 (126)
++.|+++++||+|+................+++..++ .++++||++|
T Consensus 111 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 111 -SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp -TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred -CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 4789999999999875321111111122223333344 3999999987
No 76
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.84 E-value=1.3e-21 Score=121.26 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=85.6
Q ss_pred ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++ .....+.+++ ..+.+|||||++.+..++..+++.++++++|+|++++.+++.+..|+..+.......+.|
T Consensus 32 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 111 (189)
T 4dsu_A 32 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP 111 (189)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6677877 3345555644 568889999999999999999999999999999999999999998888877654446899
Q ss_pred EEEEEecCCCCCCC-CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSM-SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.... ..+..... ....+++++++||++|.
T Consensus 112 ~i~v~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~ 151 (189)
T 4dsu_A 112 MVLVGNKCDLPSRTVDTKQAQDL-----ARSYGIPFIETSAKTRQ 151 (189)
T ss_dssp EEEEEECTTSSSCSSCHHHHHHH-----HHHHTCCEEECCTTTCT
T ss_pred EEEEEECccCcccccCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence 99999999997532 22222211 12234579999999874
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.84 E-value=3.5e-21 Score=122.16 Aligned_cols=115 Identities=25% Similarity=0.351 Sum_probs=87.9
Q ss_pred ccCCccCceEEEEEE---C-C-EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 6 HTSPTIGSNVEEVIW---K-N-IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~---~-~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
.+.||++.......+ . . +.+.+|||+|++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .+
T Consensus 39 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~ 117 (218)
T 4djt_A 39 NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NE 117 (218)
T ss_dssp EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SS
T ss_pred CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CC
Confidence 567899976666555 2 2 7899999999999999999999999999999999999999999887776654322 46
Q ss_pred CeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|+++|+||+|+... ...... .......+++++++||++|.
T Consensus 118 ~piilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 118 APIVVCANKIDIKNRQKISKKLV-----MEVLKGKNYEYFEISAKTAH 160 (218)
T ss_dssp SCEEEEEECTTCC----CCHHHH-----HHHTTTCCCEEEEEBTTTTB
T ss_pred CCEEEEEECCCCccccccCHHHH-----HHHHHHcCCcEEEEecCCCC
Confidence 899999999999753 222222 22234456789999999873
No 78
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.84 E-value=1e-21 Score=124.17 Aligned_cols=114 Identities=13% Similarity=0.223 Sum_probs=82.9
Q ss_pred ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.++ .+.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+. .|+..+.... ++.
T Consensus 37 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 114 (212)
T 2j0v_A 37 DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNV 114 (212)
T ss_dssp SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTC
T ss_pred cCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 6789999544 445553 479999999999999999999999999999999999999999987 5555554322 479
Q ss_pred eEEEEEecCCCCCCC----------CHHHHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM----------SPVEISNLLDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~----------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ...+.. .++...+ .+++++||++|+
T Consensus 115 piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 115 PIVLVGTKLDLRDDKGYLADHTNVITSTQGE-----ELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp CEEEEEECHHHHTCHHHHHTCSSCCCHHHHH-----HHHHHHTCSEEEECCTTTCT
T ss_pred CEEEEEeCHHhhhCccccccccCCCCHHHHH-----HHHHHcCCceEEEccCCCCC
Confidence 999999999986531 111111 1122223 389999999874
No 79
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=5e-22 Score=124.81 Aligned_cols=115 Identities=25% Similarity=0.365 Sum_probs=83.3
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... .+.
T Consensus 53 ~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~ 131 (200)
T 2o52_A 53 DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNI 131 (200)
T ss_dssp -------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTC
T ss_pred cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCC
Confidence 567888844 45566655 7899999999999988899999999999999999999999999888877654322 679
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+... ++...+++++++||++|.
T Consensus 132 piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~SA~~g~ 173 (200)
T 2o52_A 132 VVILCGNKKDLDPEREVTFLEASR-----FAQENELMFLETSALTGE 173 (200)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEECTTTCT
T ss_pred cEEEEEECCCcccccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence 99999999998642 22222222 223346789999999874
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.83 E-value=3.7e-21 Score=122.39 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=90.1
Q ss_pred ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|.......+ +++.+.+|||+|++.+..++..+++.++++++|+|++++.++..+..|+..+.+.. +++
T Consensus 43 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~ 120 (221)
T 3gj0_A 43 KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENI 120 (221)
T ss_dssp EEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTC
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence 567999966655444 55789999999999999999999999999999999999999999988888776643 578
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++|+||+|+.+..... ....+....+++++++||++|.
T Consensus 121 p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 121 PIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNY 160 (221)
T ss_dssp CEEEEEECTTSSSCSSCG-----GGCCHHHHHTCEEEECBGGGTB
T ss_pred CEEEEEECCccccccccH-----HHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999997632111 1122333456789999999873
No 81
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.83 E-value=9.7e-22 Score=120.82 Aligned_cols=115 Identities=19% Similarity=0.316 Sum_probs=87.9
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.... ..++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 120 (179)
T 2y8e_A 42 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDV 120 (179)
T ss_dssp SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSS
T ss_pred CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 567888844 45566644 689999999999999999999999999999999999999999988887765432 2578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+.... ....+++++++||++|.
T Consensus 121 piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 121 IIMLVGNKTDLSDKRQVSTEEGERK-----AKELNVMFIETSAKAGY 162 (179)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEEEBTTTTB
T ss_pred cEEEEEECCcccccCcCCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence 99999999998642 222222221 12235689999999873
No 82
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.83 E-value=6e-22 Score=123.27 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=82.1
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC--CCCC
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE--DLSK 80 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~ 80 (126)
.+.||++... ..+.+ +.+.+.+|||+|++.+..+ ..+++.++++++|+|++++++++.+..|+..+.... ...+
T Consensus 49 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 127 (187)
T 3c5c_A 49 EYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS 127 (187)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCC
Confidence 6789999543 44555 4478999999999988775 568999999999999999999999998887775431 1147
Q ss_pred CeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeee-eeC
Q psy6566 81 AAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCA-LTG 125 (126)
Q Consensus 81 ~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa-~~~ 125 (126)
.|+++++||+|+... ...++... +++..+++++++|| ++|
T Consensus 128 ~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 128 IPALLLGNKLDMAQYRQVTKAEGVA-----LAGRFGCLFFEVSACLDF 170 (187)
T ss_dssp CCEEEEEECGGGGGGCSSCHHHHHH-----HHHHHTCEEEECCSSSCS
T ss_pred CCEEEEEECcchhhcCccCHHHHHH-----HHHHcCCcEEEEeecCcc
Confidence 899999999998642 22222222 22233568999999 776
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=1e-21 Score=123.17 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=78.6
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|.. ...+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+... ...++
T Consensus 56 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~ 134 (199)
T 2p5s_A 56 NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETV 134 (199)
T ss_dssp ---------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---C
T ss_pred cCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCC
Confidence 577888844 45666644 77999999999999999999999999999999999999999988877665432 22578
Q ss_pred eEEEEEecCCCCC--------CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKN--------SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.. ....++.. .++...+++++++||++|.
T Consensus 135 piilv~NK~Dl~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 135 PIMLVGNKADIRDTAATEGQKCVPGHFGE-----KLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp CEEEEEECGGGHHHHHHTTCCCCCHHHHH-----HHHHHHTCEEEECCTTTCT
T ss_pred CEEEEEECcccccccccccccccCHHHHH-----HHHHHcCCeEEEeeCCCCC
Confidence 9999999999852 11111111 1222345689999999874
No 84
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1e-21 Score=122.90 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=87.1
Q ss_pred ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.++ ...+.+|||+|++. ...+..+++.++++++|+|++++++++.+..|+..+.......++|
T Consensus 56 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 134 (196)
T 2atv_A 56 EYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT 134 (196)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC
T ss_pred ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 6789998554 445664 47899999999988 7788889999999999999999999999988877776543336899
Q ss_pred EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+... ....+... +.+..+++++++||++|.
T Consensus 135 iilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 135 LILVGNKADLDHSRQVSTEEGEK-----LATELACAFYECSACTGE 175 (196)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSEEEECCTTTCT
T ss_pred EEEEEECcccccccccCHHHHHH-----HHHHhCCeEEEECCCcCC
Confidence 9999999998652 22222221 112235689999999874
No 85
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.83 E-value=6.7e-22 Score=124.03 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=80.6
Q ss_pred ccCCccC--ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIG--SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++ +....+.+++ +.+.+|||+|++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 139 (199)
T 3l0i_B 61 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENV 139 (199)
T ss_dssp HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCS
T ss_pred CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCC
Confidence 4457777 4456666655 789999999999999999999999999999999999999999998887775543 2579
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
|+++++||+|+..... +.......+....+++++++||++|
T Consensus 140 p~ilv~nK~Dl~~~~~---v~~~~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 140 NKLLVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp EEEEC-CCSSCC--CC---CCSCC-CHHHHTTTCCBCCCCC---
T ss_pred CEEEEEECccCCcccc---CCHHHHHHHHHHcCCeEEEEECCCC
Confidence 9999999999865311 1111122233445668999999987
No 86
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.83 E-value=6.5e-22 Score=120.47 Aligned_cols=114 Identities=20% Similarity=0.337 Sum_probs=87.8
Q ss_pred ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+. ...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.... .+.
T Consensus 33 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~ 110 (168)
T 1z2a_A 33 DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDI 110 (168)
T ss_dssp CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSC
T ss_pred CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCC
Confidence 678998854 4555554 4689999999999999999999999999999999999999999888877775543 578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++.... .+..+++++++||++|.
T Consensus 111 piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 152 (168)
T 1z2a_A 111 PTALVQNKIDLLDDSCIKNEEAEGL-----AKRLKLRFYRTSVKEDL 152 (168)
T ss_dssp CEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEECBTTTTB
T ss_pred CEEEEEECcccCcccccCHHHHHHH-----HHHcCCeEEEEecCCCC
Confidence 99999999998652 222332221 12335689999999873
No 87
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=1e-21 Score=119.78 Aligned_cols=115 Identities=23% Similarity=0.339 Sum_probs=81.3
Q ss_pred ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+. ...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.. ..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 109 (170)
T 1g16_A 31 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEA 109 (170)
T ss_dssp -------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 6778888544 455554 4789999999999999999999999999999999999999998888877765543 2578
Q ss_pred eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ...++.... .+..+++++++||++|.
T Consensus 110 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 150 (170)
T 1g16_A 110 QLLLVGNKSDMETRVVTADQGEAL-----AKELGIPFIESSAKNDD 150 (170)
T ss_dssp EEEEEEECTTCTTCCSCHHHHHHH-----HHHHTCCEEECBTTTTB
T ss_pred cEEEEEECccCCcCccCHHHHHHH-----HHHcCCeEEEEECCCCC
Confidence 99999999999542 222222211 12234579999999873
No 88
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=1.8e-20 Score=117.26 Aligned_cols=96 Identities=22% Similarity=0.365 Sum_probs=76.7
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC-CCCHHHH
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN-SMSPVEI 101 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~v 101 (126)
..+.+|||||++.+...+..+++.++++++|+|++++.++..+..|+..+... .+.|+++|+||+|+.. ....+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHH
Confidence 88999999999999999999999999999999999999999998888777654 2389999999999432 2333333
Q ss_pred HhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 102 SNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.... +..+++++++||++|.
T Consensus 170 ~~~~-----~~~~~~~~~~Sa~~~~ 189 (208)
T 3clv_A 170 QKYA-----QDNNLLFIQTSAKTGT 189 (208)
T ss_dssp HHHH-----HHTTCEEEEECTTTCT
T ss_pred HHHH-----HHcCCcEEEEecCCCC
Confidence 3322 2346689999999874
No 89
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=5.3e-21 Score=117.77 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=75.0
Q ss_pred ccCCccCce--EEEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC---C
Q psy6566 6 HTSPTIGSN--VEEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE---D 77 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~---~ 77 (126)
.+.||++.. ...+.+. ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 115 (182)
T 1ky3_A 36 QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115 (182)
T ss_dssp TC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccC
Confidence 677888844 4445543 4789999999999999999999999999999999999999999888877665432 2
Q ss_pred CCCCeEEEEEecCCCCCC---CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNS---MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..++|+++++||+|+... ....+...... ....++++++||++|.
T Consensus 116 ~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKNAI 163 (182)
T ss_dssp TTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTTTB
T ss_pred cCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCCCC
Confidence 257899999999998532 12222222111 1345679999999873
No 90
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=4.8e-21 Score=120.95 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=87.3
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 126 (213)
T 3cph_A 48 SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEA 126 (213)
T ss_dssp SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCS
T ss_pred ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 677888844 45666665 789999999999999999999999999999999999999998888877765532 2478
Q ss_pred eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+.... ....+++++++||++|.
T Consensus 127 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 127 QLLLVGNKSDMETRVVTADQGEAL-----AKELGIPFIESSAKNDD 167 (213)
T ss_dssp EEEEEEECTTCSSCCSCHHHHHHH-----HHHHTCCEEECBTTTTB
T ss_pred CEEEEEECCCCcccccCHHHHHHH-----HHHcCCEEEEEeCCCCC
Confidence 99999999999532 222222211 11234579999999873
No 91
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.82 E-value=3.5e-20 Score=114.82 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=70.8
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ ..+.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+ ..|+..+.... ++.
T Consensus 35 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~ 112 (184)
T 1m7b_A 35 NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNT 112 (184)
T ss_dssp SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTC
T ss_pred CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCC
Confidence 6789998544 34555 457899999999999999999999999999999999999999988 45555443322 579
Q ss_pred eEEEEEecCCCCC
Q psy6566 82 AVLIYANKQDIKN 94 (126)
Q Consensus 82 piilv~nK~D~~~ 94 (126)
|+++++||+|+..
T Consensus 113 piilv~nK~Dl~~ 125 (184)
T 1m7b_A 113 KMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEEEECGGGGG
T ss_pred CEEEEEEcchhhc
Confidence 9999999999964
No 92
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=3.2e-21 Score=117.69 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=84.9
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-CCCCC
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-DLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (126)
.+.||++... ..+.. +...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.. ..++.
T Consensus 31 ~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 110 (172)
T 2erx_A 31 SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESI 110 (172)
T ss_dssp SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CC
T ss_pred CCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6778888554 33444 34689999999999999999999999999999999999999988888776665421 12578
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+... .....+++++++||++|.
T Consensus 111 pii~v~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 152 (172)
T 2erx_A 111 PIMLVGNKCDESPSREVQSSEAEA-----LARTWKCAFMETSAKLNH 152 (172)
T ss_dssp CEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred CEEEEEEccccccccccCHHHHHH-----HHHHhCCeEEEecCCCCc
Confidence 99999999998643 22222111 112235689999999873
No 93
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.82 E-value=1.8e-21 Score=122.05 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=69.2
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+++ +.+.+|||+|++.+..++..+++.++++++|+|++++.++..+. .|+..+.... +++
T Consensus 48 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 125 (201)
T 2q3h_A 48 EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKA 125 (201)
T ss_dssp ---CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSS
T ss_pred CCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 6789998444 4555655 57889999999999999999999999999999999999999987 5655554332 479
Q ss_pred eEEEEEecCCCCC
Q psy6566 82 AVLIYANKQDIKN 94 (126)
Q Consensus 82 piilv~nK~D~~~ 94 (126)
|+++++||+|+..
T Consensus 126 p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 126 PIILVGTQSDLRE 138 (201)
T ss_dssp CEEEEEECGGGGG
T ss_pred CEEEEEECHhhhh
Confidence 9999999999864
No 94
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=7.1e-21 Score=119.67 Aligned_cols=117 Identities=18% Similarity=0.261 Sum_probs=87.0
Q ss_pred ccCCccCceEEE--EEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC---CC
Q psy6566 6 HTSPTIGSNVEE--VIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE---DL 78 (126)
Q Consensus 6 ~~~pTi~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~---~~ 78 (126)
.+.||++..... +.++ ...+.+|||+|++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ..
T Consensus 36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 115 (207)
T 1vg8_A 36 QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP 115 (207)
T ss_dssp SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSG
T ss_pred CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccC
Confidence 678898855544 4443 3789999999999999999999999999999999999999988888777665432 12
Q ss_pred CCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+... ...++...... ...+++++++||++|.
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 47899999999999742 22222222111 1345679999999873
No 95
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=5.2e-20 Score=122.59 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=88.3
Q ss_pred ccCCccCceEEEEEE-CCEEEEEEEcCCCcch-----HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-CCC
Q psy6566 6 HTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSL-----RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-EDL 78 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~-----~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-~~~ 78 (126)
.+.||++.....+.+ ++..+.+|||||++.+ ...+..++++++++++|+|++++++++++..|...+... ...
T Consensus 34 ~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~ 113 (307)
T 3r7w_A 34 RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS 113 (307)
T ss_dssp GCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC
Confidence 578999998888888 7899999999999998 667888899999999999999999999886654333221 012
Q ss_pred CCCeEEEEEecCCCCCCCCHH---HHHhhcCcCcccCCc---eEEEEeeeeeC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPV---EISNLLDLTSIKKQQ---WHIQSCCALTG 125 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~---~v~~~~~~~~~~~~~---~~~~~~Sa~~~ 125 (126)
+++|+++++||+|+....... ++.......+....+ ++++++||+++
T Consensus 114 ~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~~ 166 (307)
T 3r7w_A 114 PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE 166 (307)
T ss_dssp TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTSS
T ss_pred CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecCC
Confidence 579999999999987621111 022222223333333 78999999873
No 96
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.81 E-value=6e-21 Score=121.04 Aligned_cols=119 Identities=16% Similarity=0.230 Sum_probs=69.2
Q ss_pred ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.++ .+.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+. .|+..+.... +++
T Consensus 62 ~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 139 (214)
T 2j1l_A 62 SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKV 139 (214)
T ss_dssp --CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSC
T ss_pred CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 677888844 3455664 458999999999999999999999999999999999999999986 4555553322 578
Q ss_pred eEEEEEecCCCCCCCCHHHHH---------hhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEIS---------NLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~---------~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......+.. ......+++..+. +++++||++|.
T Consensus 140 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 194 (214)
T 2j1l_A 140 PIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHD 194 (214)
T ss_dssp CEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred CEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 999999999997642111110 0001112223344 89999999873
No 97
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=9.1e-21 Score=119.07 Aligned_cols=119 Identities=13% Similarity=0.244 Sum_probs=84.2
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+. .|+..+.... ++.
T Consensus 53 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 130 (201)
T 2gco_A 53 VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNV 130 (201)
T ss_dssp SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTC
T ss_pred ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 6789998554 4566644 68999999999999999999999999999999999999999884 4444443321 578
Q ss_pred eEEEEEecCCCCCCCCHHH-HHh--------hcCcCcccCCce-EEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVE-ISN--------LLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~-v~~--------~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......+ +.. .....+++..+. +++++||++|+
T Consensus 131 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 185 (201)
T 2gco_A 131 PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185 (201)
T ss_dssp CEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred CEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCC
Confidence 9999999999976411111 100 000111122334 79999999874
No 98
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.81 E-value=4e-21 Score=121.27 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=71.1
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ ..+.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+ ..|+..+.+.. ++.
T Consensus 56 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~ 133 (205)
T 1gwn_A 56 NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNT 133 (205)
T ss_dssp SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTC
T ss_pred CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCC
Confidence 6789998554 34455 457899999999999999999999999999999999999999988 55655553322 579
Q ss_pred eEEEEEecCCCCC
Q psy6566 82 AVLIYANKQDIKN 94 (126)
Q Consensus 82 piilv~nK~D~~~ 94 (126)
|+++++||+|+..
T Consensus 134 piilv~nK~Dl~~ 146 (205)
T 1gwn_A 134 KMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEEEECGGGGG
T ss_pred CEEEEEechhhcc
Confidence 9999999999864
No 99
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=3.6e-21 Score=119.02 Aligned_cols=119 Identities=17% Similarity=0.298 Sum_probs=83.9
Q ss_pred ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.++ .+.+.+|||||++.+...+..+++.++++++|+|++++.++..+. .|+..+.... ++.
T Consensus 33 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 110 (186)
T 1mh1_A 33 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNT 110 (186)
T ss_dssp SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTS
T ss_pred CcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCC
Confidence 6788988443 455564 467889999999999999999999999999999999999999887 4555544322 478
Q ss_pred eEEEEEecCCCCCCCCHHH-HHh--------hcCcCcccCCce-EEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVE-ISN--------LLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~-v~~--------~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......+ +.. .....+.+..+. +++++||++|+
T Consensus 111 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (186)
T 1mh1_A 111 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 165 (186)
T ss_dssp CEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred CEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCcc
Confidence 9999999999865311110 000 000111222344 89999999874
No 100
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.81 E-value=1.4e-21 Score=120.59 Aligned_cols=119 Identities=14% Similarity=0.221 Sum_probs=72.6
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+ ..+.+.+|||+|++++...+..+++.++++++|+|++++.+++.+. .|+..+.... ++.
T Consensus 36 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 113 (182)
T 3bwd_D 36 DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGV 113 (182)
T ss_dssp ---------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTC
T ss_pred CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 6778887433 23334 4567889999999999999999999999999999999999999987 4555443322 478
Q ss_pred eEEEEEecCCCCCCCCHHH-------HHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVE-------ISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~-------v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+...... +.......+.+..+. +++++||++|+
T Consensus 114 piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (182)
T 3bwd_D 114 PIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQE 166 (182)
T ss_dssp CEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred CEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9999999999865311000 000111112222343 89999999874
No 101
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=9.4e-21 Score=118.40 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=85.6
Q ss_pred ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-CCCC
Q psy6566 6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-LSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (126)
.+.||++... ..+.+ ....+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.+... ..+.
T Consensus 36 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 115 (199)
T 2gf0_A 36 TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDI 115 (199)
T ss_dssp TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGS
T ss_pred cccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5778988554 33444 346899999999999999999999999999999999999999888877655544211 2478
Q ss_pred eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+... .....+++++++||++|.
T Consensus 116 piilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 156 (199)
T 2gf0_A 116 PVMLVGNKCDETQREVDTREAQA-----VAQEWKCAFMETSAKMNY 156 (199)
T ss_dssp CEEEEEECTTCSSCSSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred CEEEEEECccCCccccCHHHHHH-----HHHHhCCeEEEEecCCCC
Confidence 99999999999752 22222221 112234689999999873
No 102
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=2.1e-20 Score=113.28 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=87.2
Q ss_pred ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++.. ...+.+. ...+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......+.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p 110 (166)
T 2ce2_X 31 ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110 (166)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC
T ss_pred ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 567888744 3455553 4678999999999999999999999999999999999999999988887765543335799
Q ss_pred EEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+... ....+.... .+..+++++++||++|.
T Consensus 111 ~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 111 MVLVGNKSDLAARTVESRQAQDL-----ARSYGIPYIETSAKTRQ 150 (166)
T ss_dssp EEEEEECTTCSCCCSCHHHHHHH-----HHHHTCCEEEECTTTCT
T ss_pred EEEEEEchhhhhcccCHHHHHHH-----HHHcCCeEEEecCCCCC
Confidence 9999999998752 222222221 12234579999999874
No 103
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.81 E-value=2.7e-20 Score=115.66 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=76.9
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+.||++... ..+.+.+ ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......++|
T Consensus 49 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 128 (190)
T 3con_A 49 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP 128 (190)
T ss_dssp CCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC
T ss_pred ccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 5677887443 4566644 679999999999999999999999999999999999999999888777665543335789
Q ss_pred EEEEEecCCCCC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.. ....+++... .+..+++++++||++|.
T Consensus 129 ~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 168 (190)
T 3con_A 129 MVLVGNKCDLPTRTVDTKQAHEL-----AKSYGIPFIETSAKTRQ 168 (190)
T ss_dssp EEEEEECTTCSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCT
T ss_pred EEEEEECCcCCcccCCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence 999999999875 2232332222 12234579999999874
No 104
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.80 E-value=2.9e-20 Score=117.13 Aligned_cols=119 Identities=17% Similarity=0.278 Sum_probs=82.7
Q ss_pred ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+ ..+.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+. .|+..+... . ++.
T Consensus 58 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~ 135 (204)
T 4gzl_A 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-C-PNT 135 (204)
T ss_dssp -CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-SSC
T ss_pred CcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCC
Confidence 677888733 344555 4466779999999999999999999999999999999999999987 454444333 2 679
Q ss_pred eEEEEEecCCCCCCCCHHHHHhh---------cCcCcccCCc-eEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNL---------LDLTSIKKQQ-WHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~---------~~~~~~~~~~-~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......+.... ....+.+..+ .+++++||++|+
T Consensus 136 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 190 (204)
T 4gzl_A 136 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 190 (204)
T ss_dssp CEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred CEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCC
Confidence 99999999998754211111110 0011111222 369999999874
No 105
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.80 E-value=2.9e-20 Score=116.36 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=75.1
Q ss_pred CCEEEEEEEcCCCcchHHHH---HhhccCCcEEEEEEECCCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW---STYYTNTEFVILVIDSTDR--ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~---~~~~~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
..+.+.+|||+|+++|.... ..++++++++++|+|++++ +++..+..|+...... .++.|+++|+||+|+.+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCH
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCch
Confidence 45899999999999987765 7899999999999999987 6666666666665322 258999999999998652
Q ss_pred C----CHHHHHhhcCcCccc----CCceEEEEeeeee
Q psy6566 96 M----SPVEISNLLDLTSIK----KQQWHIQSCCALT 124 (126)
Q Consensus 96 ~----~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~ 124 (126)
. ....+.......+++ ..++++++|||++
T Consensus 145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 181 (196)
T 3llu_A 145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS
T ss_pred hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech
Confidence 1 112333322222332 6678999999986
No 106
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.80 E-value=1.8e-20 Score=117.15 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=78.6
Q ss_pred cccCCccCc--eEEEEEECC--EEEEEEEcCCCcc-hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 5 VHTSPTIGS--NVEEVIWKN--IHFIMWDLGGQQS-LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 5 ~~~~pTi~~--~~~~~~~~~--~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
....||+|. ....+.+++ +.+.+|||+|++. ++.++..+++.++++++|||++++++|+.+..|+..+.+.....
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~ 113 (192)
T 2cjw_A 34 DSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE 113 (192)
T ss_dssp ----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence 334455663 345666654 5678999999876 44567778899999999999999999999988877665432235
Q ss_pred CCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.|+++++||+|+... ....+. ..++...++++++|||++|.
T Consensus 114 ~~piilV~NK~Dl~~~r~v~~~~~-----~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 114 DIPIILVGNKSDLVRXREVSVSEG-----RAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHH-----HHHHHHTTCEEEECBTTTTB
T ss_pred CCeEEEEEechhhhccccccHHHH-----HHHHHHhCCceEEeccccCC
Confidence 7899999999998642 222211 11122335689999999873
No 107
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3e-19 Score=112.59 Aligned_cols=119 Identities=15% Similarity=0.256 Sum_probs=79.0
Q ss_pred ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (126)
.+.||++... ..+.+++ ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+ ..|+..+.... ++.
T Consensus 53 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 130 (207)
T 2fv8_A 53 VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNV 130 (207)
T ss_dssp ------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTC
T ss_pred cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 5678988554 4456644 6899999999999999999999999999999999999999988 44544443321 578
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcC---------cCcccCCce-EEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLD---------LTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~---------~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......+...... ..++...+. +++++||++|.
T Consensus 131 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 185 (207)
T 2fv8_A 131 PIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKE 185 (207)
T ss_dssp CEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred CEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCC
Confidence 9999999999865311111111100 111112233 79999999874
No 108
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.67 E-value=5.8e-21 Score=120.11 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=85.0
Q ss_pred ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+ ..+.+.+|||+|++.+...+..+++.++++++|+|++++.++..+. .|+..+ .... +++
T Consensus 58 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l-~~~~-~~~ 135 (204)
T 3th5_A 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHC-PNT 135 (204)
Confidence 567787733 334444 4567889999999999999999999999999999999999999887 444444 3322 478
Q ss_pred eEEEEEecCCCCCCCCHH---------HHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPV---------EISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~---------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
|+++++||+|+....... .+.......+++..+. +++++||++|+
T Consensus 136 piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~ 190 (204)
T 3th5_A 136 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 190 (204)
Confidence 999999999997532110 2222223333444555 89999999874
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.74 E-value=3.8e-19 Score=118.89 Aligned_cols=119 Identities=16% Similarity=0.274 Sum_probs=83.1
Q ss_pred ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+.+|||+|++.+...+..+++.++++++|+|++++.++..+. .|+..+.... +++
T Consensus 183 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~ 260 (332)
T 2wkq_A 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNT 260 (332)
T ss_dssp SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTS
T ss_pred ccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCC
Confidence 678888844 34556654 55669999999999999999999999999999999999999887 4444443322 479
Q ss_pred eEEEEEecCCCCCCCCHHHHHhh---------cCcCcccCCce-EEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNL---------LDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~---------~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
|+++++||+|+.......+.... ....+.+..+. +++++||++|.
T Consensus 261 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 315 (332)
T 2wkq_A 261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 315 (332)
T ss_dssp CEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred cEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 99999999998653110000000 00111222344 89999999874
No 110
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=5.1e-19 Score=117.53 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=80.7
Q ss_pred cccCCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCe
Q psy6566 5 VHTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 5 ~~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p 82 (126)
.+|.||+|.... +.+ .+..+++||| +++++.+++.+++++|++++|+|++++. ++..+..|+..+.. .++|
T Consensus 45 ~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~p 117 (301)
T 1u0l_A 45 QNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELE 117 (301)
T ss_dssp TTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCE
T ss_pred cCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCC
Confidence 368899995543 444 2237999999 9999999999999999999999999987 78878777765532 4789
Q ss_pred EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++|+||+|+.+....++..+... . .... ++++++||++|.
T Consensus 118 iilv~NK~DL~~~~~v~~~~~~~~-~-~~~~-~~~~~~SAktg~ 158 (301)
T 1u0l_A 118 TVMVINKMDLYDEDDLRKVRELEE-I-YSGL-YPIVKTSAKTGM 158 (301)
T ss_dssp EEEEECCGGGCCHHHHHHHHHHHH-H-HTTT-SCEEECCTTTCT
T ss_pred EEEEEeHHHcCCchhHHHHHHHHH-H-Hhhh-CcEEEEECCCCc
Confidence 999999999975311111111110 1 1111 679999999874
No 111
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=106.43 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=71.8
Q ss_pred cCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHH---HHHhCCCC-CCCCeEEEEEecC-CCCCCCCHHHHHhh
Q psy6566 30 LGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL---YKMLNHED-LSKAAVLIYANKQ-DIKNSMSPVEISNL 104 (126)
Q Consensus 30 t~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~piilv~nK~-D~~~~~~~~~v~~~ 104 (126)
.+||+.++.+|+.|++++|++|||+|+++.+.++ .+..+ ..++.... ..++|++|++||. |+++..+..++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 4589999999999999999999999999886554 55555 44454432 4789999999995 88888888999999
Q ss_pred cCcCcccCCceEEEEeeeeeCC
Q psy6566 105 LDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 105 ~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.+... .+.+.++.|||++|+
T Consensus 188 L~L~~l-~R~W~Iq~csA~TGe 208 (227)
T 3l82_B 188 LHLNLL-NHPWLVQDTEAETLT 208 (227)
T ss_dssp TTGGGG-CSCEEEEEEETTTCT
T ss_pred cCCcCC-CCCEEEEEeECCCCc
Confidence 888776 489999999999985
No 112
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=2.8e-17 Score=100.85 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=79.5
Q ss_pred ccCCccC--ceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566 6 HTSPTIG--SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV 83 (126)
Q Consensus 6 ~~~pTi~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi 83 (126)
.+.|+++ +....+.+++..+.+|||||++.+...+..+++.+|++++|+|+++...... ...+.... . .++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~l~~~~-~---~~~p~ 110 (178)
T 2lkc_A 36 QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQT-VEAINHAK-A---ANVPI 110 (178)
T ss_dssp SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHH-HHHHHHHG-G---GSCCE
T ss_pred CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHH-h---CCCCE
Confidence 3445554 5566778888999999999999999988889999999999999987433222 22333332 2 46899
Q ss_pred EEEEecCCCCCCCCHHHHHhhcCc--CcccCC--ceEEEEeeeeeC
Q psy6566 84 LIYANKQDIKNSMSPVEISNLLDL--TSIKKQ--QWHIQSCCALTG 125 (126)
Q Consensus 84 ilv~nK~D~~~~~~~~~v~~~~~~--~~~~~~--~~~~~~~Sa~~~ 125 (126)
++++||+|+... ..+++...+.. ...... .++++++||++|
T Consensus 111 ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 111 IVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 999999999763 23333332221 122222 378999999987
No 113
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=1.3e-19 Score=114.97 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=77.8
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccC----CcEEEEEEECC-CcccHHHHHHHHHHHhCCC---C
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTN----TEFVILVIDST-DRERISLTKEELYKMLNHE---D 77 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~---~ 77 (126)
.+.||++... ....+.+|||||++.++..+..+++. ++++++|+|++ +++++.....|+..++... .
T Consensus 43 ~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (218)
T 1nrj_B 43 SQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 117 (218)
T ss_dssp CSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccc
Confidence 3556655332 56789999999999999988888877 89999999999 8889999988888776532 1
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcC---cCcccCCceEEEEeeeeeC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLD---LTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~Sa~~~ 125 (126)
..++|+++++||+|+.......++...+. ..+....+.+++++||++|
T Consensus 118 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~ 168 (218)
T 1nrj_B 118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN 168 (218)
T ss_dssp TTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 25799999999999987654333221111 1122223445777777765
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.72 E-value=1e-17 Score=102.92 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=73.9
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchH----H--H--HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLR----A--A--WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~----~--~--~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
|.++....+.+++..+.+|||||++.+. . . ...+++.++++++|+|++++.++.. ..|+..+.+.. ..++
T Consensus 39 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~ 116 (172)
T 2gj8_A 39 TRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKL 116 (172)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTC
T ss_pred eeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCC
Confidence 3446667788888899999999986531 1 1 1235889999999999998877763 35555554332 2578
Q ss_pred eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.+.. ..+......+++++||++|+
T Consensus 117 p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 117 PITVVRNKADITGET----------LGMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp CEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTTCT
T ss_pred CEEEEEECccCCcch----------hhhhhccCCceEEEeCCCCC
Confidence 999999999985421 11222346789999999874
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.71 E-value=5.6e-17 Score=103.61 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=72.0
Q ss_pred ccCceEEEEEECCEEEEEEEcCCC------cc----hHHHHHhhccCCcEEEEEEECCCcccHH--HHHHHHHHHhCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQ------QS----LRAAWSTYYTNTEFVILVIDSTDRERIS--LTKEELYKMLNHED 77 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~------~~----~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~~~~~~~~~~~~ 77 (126)
|..+....+..++..+.+|||||+ +. +.. +..++..++++++|+|++++.++. ....|+..+...
T Consensus 63 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-- 139 (228)
T 2qu8_A 63 TKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-- 139 (228)
T ss_dssp --CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--
T ss_pred ceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--
Confidence 444556666678899999999999 54 222 344578899999999999887764 233455555433
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCc--eEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ--WHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~ 126 (126)
.++.|+++|+||+|+................+....+ ++++++||++|+
T Consensus 140 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 190 (228)
T 2qu8_A 140 FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGV 190 (228)
T ss_dssp C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCT
T ss_pred hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCC
Confidence 2478999999999997532211110011111222223 789999999874
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.69 E-value=7.1e-17 Score=97.47 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=71.6
Q ss_pred CceEEEEEECCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL 84 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 84 (126)
......+...+..+.+|||+|++. +...+..+++.++++++|+|++++.+... .++...++. .+.|++
T Consensus 38 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~i 112 (161)
T 2dyk_A 38 DLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVI 112 (161)
T ss_dssp CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEE
T ss_pred cceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEE
Confidence 355666777888999999999887 45677788999999999999987543322 233344333 468999
Q ss_pred EEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
+++||+|+.... ++ ...+. ..++ +++++||++|.
T Consensus 113 lv~nK~Dl~~~~--~~-----~~~~~-~~~~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 113 LVATKVDDPKHE--LY-----LGPLY-GLGFGDPIPTSSEHAR 147 (161)
T ss_dssp EEEECCCSGGGG--GG-----CGGGG-GGSSCSCEECBTTTTB
T ss_pred EEEECcccccch--Hh-----HHHHH-hCCCCCeEEEecccCC
Confidence 999999987531 11 11222 2233 68999999873
No 117
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.68 E-value=1.4e-17 Score=104.29 Aligned_cols=115 Identities=22% Similarity=0.315 Sum_probs=83.0
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||+|.. ...+.+++ +.+.+|||+|++.++..+..+++.++++++|+|+++..+++.+..|+..+... ...+.
T Consensus 33 ~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~ 111 (199)
T 2f9l_A 33 ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNI 111 (199)
T ss_dssp ---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence 567898854 45666755 57889999999999888888999999999999999988888887777655332 12568
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ....+.. ..+...++.++++||+++.
T Consensus 112 ~i~~v~nK~Dl~~~~~~~~~~a~-----~l~~~~~~~~~d~Sal~~~ 153 (199)
T 2f9l_A 112 VIMLVGNKSDLRHLRAVPTDEAR-----AFAEKNNLSFIETSALDST 153 (199)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHH-----HHHHHTTCEEEECCTTTCT
T ss_pred eEEEEEECcccccccCcCHHHHH-----HHHHHcCCeEEEEeCCCCC
Confidence 99999999999642 2222211 1223345689999999863
No 118
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.67 E-value=1.5e-16 Score=99.04 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=71.0
Q ss_pred ccCCccCceE--EEEEECCEEEEEEEcCC----------CcchHHHHHhhccCC---cEEEEEEECCCcccHHHHHHHHH
Q psy6566 6 HTSPTIGSNV--EEVIWKNIHFIMWDLGG----------QQSLRAAWSTYYTNT---EFVILVIDSTDRERISLTKEELY 70 (126)
Q Consensus 6 ~~~pTi~~~~--~~~~~~~~~~~i~Dt~G----------~~~~~~~~~~~~~~~---~~~l~v~d~~~~~~~~~~~~~~~ 70 (126)
.+.||.+... ....++. .+.+||||| ++.+..++..+++.+ +++++|+|++++.++.... +.
T Consensus 51 ~~~~~~~~t~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~ 127 (195)
T 1svi_A 51 RTSSKPGKTQTLNFYIIND-ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ--MY 127 (195)
T ss_dssp ---------CCEEEEEETT-TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HH
T ss_pred ccCCCCCceeeEEEEEECC-cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HH
Confidence 4556666332 3333433 699999999 788888888888777 9999999999877766542 11
Q ss_pred HHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 71 KMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 71 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.. .+.|+++++||+|+.......................+++++||++|+
T Consensus 128 ~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 180 (195)
T 1svi_A 128 EFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKK 180 (195)
T ss_dssp HHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCT
T ss_pred HHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCC
Confidence 22222 468999999999997643222211221111222346789999999874
No 119
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.65 E-value=4.4e-17 Score=99.31 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=69.8
Q ss_pred cCCcc--CceEEEEEECCEEEEEEEcCCCcchH------HHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTI--GSNVEEVIWKNIHFIMWDLGGQQSLR------AAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi--~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
+.|++ ......+.+++..+.+|||||++.+. .+...+++ .++++++|+|+++.+ ....|+..+.+
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~-- 106 (165)
T 2wji_A 32 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME-- 106 (165)
T ss_dssp -----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH--
T ss_pred CCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh--
Confidence 34544 34556677788999999999998774 45566665 899999999998743 34445555543
Q ss_pred CCCCCeEEEEEecCCCCCC--C--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNS--M--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~--~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+... . ...++... .+++++++||++|+
T Consensus 107 --~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~~~ 150 (165)
T 2wji_A 107 --MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLSAAKKM 150 (165)
T ss_dssp --TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBGGGTB
T ss_pred --cCCCEEEEEEchHhccccChhhHHHHHHHH--------hCCCEEEEEcCCCC
Confidence 36899999999997531 1 11222222 23579999999874
No 120
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.65 E-value=8.9e-17 Score=105.12 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=75.2
Q ss_pred cCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHH---HHhCCCC-CCCCeEEEEEec-CCCCCCCCHHHHHhh
Q psy6566 30 LGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY---KMLNHED-LSKAAVLIYANK-QDIKNSMSPVEISNL 104 (126)
Q Consensus 30 t~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~piilv~nK-~D~~~~~~~~~v~~~ 104 (126)
.+||+..+..|+.|++++|++|||+|+++.+.++ .+..+. .++.... ..++|++|++|| .|+++..+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4789999999999999999999999999987655 444333 4444321 368999999997 699888888999999
Q ss_pred cCcCcccCCceEEEEeeeeeCC
Q psy6566 105 LDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 105 ~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++... .+.+.++.|||++|+
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGe 293 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLT 293 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCT
T ss_pred cCCccC-CCcEEEEecccCCCc
Confidence 887766 479999999999985
No 121
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.64 E-value=7.8e-18 Score=109.46 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=72.3
Q ss_pred CCEEEEEEE-----------------------cCCCcchHHHHHhhcc---------------------CCcEEEEEEEC
Q psy6566 21 KNIHFIMWD-----------------------LGGQQSLRAAWSTYYT---------------------NTEFVILVIDS 56 (126)
Q Consensus 21 ~~~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~~~~~l~v~d~ 56 (126)
..+.+++|| ++|++++..++..+++ +|+++++|+|+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 557899999 7888888888888887 79999999999
Q ss_pred CCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566 57 TDR--ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK-QQWHIQSCCALTGE 126 (126)
Q Consensus 57 ~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~ 126 (126)
+++ .+++.+..|+..+.+.....++|+++|+||+|+... ..+.. ...+... .+++++++||++|.
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---~~v~~--~~~~~~~~~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRD--AHTFALSKKNLQVVETSARSNV 240 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---HHHHH--HHHHHHTSSSCCEEECBTTTTB
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---HHHHH--HHHHHHhcCCCeEEEEECCCCC
Confidence 998 899999988877765322257899999999998653 22211 1111222 36789999999873
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.64 E-value=1.8e-16 Score=98.41 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=73.0
Q ss_pred CcccCCccCceEEEEEE-CCEEEEEEEcCC----------CcchHHHHHhhccCC---cEEEEEEECCCcccHHH--HHH
Q psy6566 4 VVHTSPTIGSNVEEVIW-KNIHFIMWDLGG----------QQSLRAAWSTYYTNT---EFVILVIDSTDRERISL--TKE 67 (126)
Q Consensus 4 ~~~~~pTi~~~~~~~~~-~~~~~~i~Dt~G----------~~~~~~~~~~~~~~~---~~~l~v~d~~~~~~~~~--~~~ 67 (126)
+..+.||.+........ .+..+.+||||| ++.+...+..+++.+ +++++|+|+++..+... ...
T Consensus 48 ~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~ 127 (195)
T 3pqc_A 48 IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVE 127 (195)
T ss_dssp CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH
T ss_pred cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHH
Confidence 34566777744322222 345688999999 777888888887766 99999999887543332 222
Q ss_pred HHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 68 ELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 68 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+. . .+.|+++++||+|+......................++++++||++|+
T Consensus 128 ~~~----~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 128 WMK----S---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179 (195)
T ss_dssp HHH----H---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred HHH----H---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 222 2 268999999999997643222222222111112244689999999874
No 123
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.64 E-value=6.2e-17 Score=100.92 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=84.1
Q ss_pred ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.+.||++.. ...+.+++ +.+.+||++|++++...+..+++.++++++|+|.++..+++.+..|+..+... ...+.
T Consensus 57 ~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~ 135 (191)
T 1oix_A 57 ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNI 135 (191)
T ss_dssp SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence 677999954 45666765 45678999999999888888999999999999999988888887776654332 12568
Q ss_pred eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+... ..... .. ..+...++.++++||+++.
T Consensus 136 ~i~~v~nK~Dl~~~~~~~~~~-a~----~l~~~~~~~~ld~Sald~~ 177 (191)
T 1oix_A 136 VIMLVGNKSDLRHLRAVPTDE-AR----AFAEKNGLSFIETSALDST 177 (191)
T ss_dssp EEEEEEECGGGGGGCCSCHHH-HH----HHHHHTTCEEEECCTTTCT
T ss_pred cEEEEEECcccccccccCHHH-HH----HHHHHcCCEEEEEeCCCCC
Confidence 99999999998642 22222 11 1223345689999999863
No 124
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.61 E-value=1.2e-16 Score=113.28 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=73.2
Q ss_pred ccCCccCceEEEEE--------E----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHh
Q psy6566 6 HTSPTIGSNVEEVI--------W----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73 (126)
Q Consensus 6 ~~~pTi~~~~~~~~--------~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~ 73 (126)
.+.||+|.+..+.. + ++..+.+|||||++.+...+..+++.++++++|+|+++.+ ....|+..+.
T Consensus 69 ~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~ 145 (535)
T 3dpu_A 69 KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS---NKHYWLRHIE 145 (535)
T ss_dssp ------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGG---GHHHHHHHHH
T ss_pred CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCch---hHHHHHHHHH
Confidence 67799997776542 2 3689999999999999999999999999999999987654 4445555554
Q ss_pred CCCCCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 74 NHEDLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 74 ~~~~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
... ++.|+++|+||+|+.... ..+++.... ...+.+++++||++|.
T Consensus 146 ~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 146 KYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRISCKNGD 193 (535)
T ss_dssp HHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEECCC----
T ss_pred HhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEEecCccc
Confidence 332 468999999999997532 233333322 2234579999999874
No 125
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.61 E-value=5.9e-15 Score=102.37 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=75.0
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
|+......+..++..+.+|||||++.|...+..+++.+|++++|+|+++... .....++..+... ...|+++++||
T Consensus 91 Ti~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK 166 (434)
T 1zun_B 91 TIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINK 166 (434)
T ss_dssp CCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEEC
T ss_pred EEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEc
Confidence 4455555566688999999999999999988889999999999999987542 3334444333222 22369999999
Q ss_pred CCCCCCCC--HHHHHhhcCcCccc-----CCceEEEEeeeeeCC
Q psy6566 90 QDIKNSMS--PVEISNLLDLTSIK-----KQQWHIQSCCALTGE 126 (126)
Q Consensus 90 ~D~~~~~~--~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 126 (126)
+|+.+... ..++..... .+.+ ...++++++||++|+
T Consensus 167 ~Dl~~~~~~~~~~i~~~~~-~~~~~~g~~~~~~~~i~vSA~~g~ 209 (434)
T 1zun_B 167 MDLNGFDERVFESIKADYL-KFAEGIAFKPTTMAFVPMSALKGD 209 (434)
T ss_dssp TTTTTSCHHHHHHHHHHHH-HHHHTTTCCCSEEEEEECCTTTCT
T ss_pred CcCCcccHHHHHHHHHHHH-HHHHHhCCCccCceEEEEeccCCC
Confidence 99976211 111211111 1111 234789999999874
No 126
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.61 E-value=1.1e-15 Score=106.00 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-------HHHHHHHhCCCCCCC
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-------KEELYKMLNHEDLSK 80 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~ 80 (126)
.+|++.....+..++..+.+|||||++.|...+..+++.+|++++|+|+++ .+|+.. ..++...... ..
T Consensus 69 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~ 144 (435)
T 1jny_A 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GL 144 (435)
T ss_dssp --------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TC
T ss_pred CceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CC
Confidence 367776666777788999999999999999999999999999999999988 556533 3333222111 22
Q ss_pred CeEEEEEecCCCCCC-CCH---HH----HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNS-MSP---VE----ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~-~~~---~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|+++++||+|+.+. ... +. +...+.........++++++||++|+
T Consensus 145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~ 198 (435)
T 1jny_A 145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD 198 (435)
T ss_dssp TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTB
T ss_pred CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCc
Confidence 468999999999762 111 11 11111111111224789999999873
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.59 E-value=2.1e-14 Score=95.38 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=68.6
Q ss_pred EEEECCEEEEEEEcCCCcc--------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 17 EVIWKNIHFIMWDLGGQQS--------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 17 ~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
.+..++.++.+|||||+.. +......+++.+|++++|+|+++..+.. ..++...++... ++.|+++++|
T Consensus 49 i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~N 125 (301)
T 1wf3_A 49 ILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGN 125 (301)
T ss_dssp EEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEE
T ss_pred EEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEE
Confidence 3444889999999999876 5666778899999999999998764443 234444444321 4789999999
Q ss_pred cCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 89 KQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 89 K~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
|+|+..... ..+....+ ....+++++||++|
T Consensus 126 K~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 126 KLDAAKYPEEAMKAYHEL------LPEAEPRMLSALDE 157 (301)
T ss_dssp CGGGCSSHHHHHHHHHHT------STTSEEEECCTTCH
T ss_pred CcccCCchHHHHHHHHHh------cCcCcEEEEeCCCC
Confidence 999975421 11112221 12236899999875
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=8e-16 Score=106.74 Aligned_cols=112 Identities=17% Similarity=0.067 Sum_probs=76.9
Q ss_pred ccCceEEEEEECCEEEEEEEcCCC----------cchHHHHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQ----------QSLRAAWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
|.+.....+.+++..+.+|||||+ +.|...+. .+++.+|++++|+|+++..++++. .|+..+..
T Consensus 210 T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---- 284 (436)
T 2hjg_A 210 TRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---- 284 (436)
T ss_dssp ----CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----
T ss_pred eeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----
Confidence 333445667778889999999997 66665544 478899999999999998877765 34444432
Q ss_pred CCCeEEEEEecCCCCCCCC--HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMS--PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+.+... .+++...+...+......+++++||++|.
T Consensus 285 ~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~ 334 (436)
T 2hjg_A 285 AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 334 (436)
T ss_dssp TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCC
Confidence 4689999999999976432 23333333222223345689999999884
No 129
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.59 E-value=5.4e-15 Score=102.70 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=75.7
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCccc---H---HHHHHHHHHHhCCCCCCCCe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER---I---SLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p 82 (126)
.|+......+..++..+.+|||||+++|...+..+++.+|++++|+|+++... + ......+..... .++|
T Consensus 81 iTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~ 156 (439)
T 3j2k_7 81 KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVK 156 (439)
T ss_pred ceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCC
Confidence 45566666677788999999999999999999999999999999999987432 1 123333332222 3456
Q ss_pred -EEEEEecCCCCCCC----CHHHHHhhcC-----cCcccCCceEEEEeeeeeCC
Q psy6566 83 -VLIYANKQDIKNSM----SPVEISNLLD-----LTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 -iilv~nK~D~~~~~----~~~~v~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.... ..+++...+. ..+.....++++++||++|+
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ 210 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGA 210 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCc
Confidence 99999999986421 1112222111 01111125789999999884
No 130
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.59 E-value=5.1e-15 Score=103.88 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=74.8
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccH------HHHHHHHHHHhCCCCCCCCe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI------SLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p 82 (126)
.|+......+..++..+.+|||||+++|...+..+++.+|++++|+|+++..+. ......+... ... ...|
T Consensus 97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~--~~~~ 173 (483)
T 3p26_A 97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHN 173 (483)
T ss_dssp SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-HHT--TCCC
T ss_pred cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHc--CCCc
Confidence 455566666777889999999999999999999999999999999999875432 1222222222 221 2357
Q ss_pred EEEEEecCCCCCCC--CHHHHHhhcCc----CcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSM--SPVEISNLLDL----TSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~--~~~~v~~~~~~----~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.+.. ..+++...+.. .-.....++++++||++|+
T Consensus 174 iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~ 223 (483)
T 3p26_A 174 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGE 223 (483)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCT
T ss_pred EEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCC
Confidence 99999999997621 11222221110 0011235789999999874
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.59 E-value=1.6e-14 Score=101.23 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=75.8
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCc-chH--------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQ-SLR--------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~-~~~--------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
+|..+....+.+++..+.+|||||++ .+. .....+++.+|++++|+|++++.++++. ..+. .+ .
T Consensus 277 TT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~-~l-----~ 349 (482)
T 1xzp_A 277 TTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILE-RI-----K 349 (482)
T ss_dssp CSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHH-HH-----T
T ss_pred eeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHH-Hh-----c
Confidence 35557778888899999999999987 542 2234578899999999999988777654 2333 32 3
Q ss_pred CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.|+++++||+|+......+++..... .+.+++++||++|+
T Consensus 350 ~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGE 390 (482)
T ss_dssp TSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGTC
T ss_pred CCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCCC
Confidence 689999999999976544444433221 22468999999874
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=6.6e-16 Score=107.70 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=74.6
Q ss_pred ceEEEEEECCEEEEEEEcCC----------CcchHHHHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566 13 SNVEEVIWKNIHFIMWDLGG----------QQSLRAAWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
.....+..++..+.+||||| ++.+...+. .+++.++++++|+|+++.... ....++ ..+.. .+.
T Consensus 233 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~-~~~~~---~~~ 307 (456)
T 4dcu_A 233 AVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIA-GYAHE---AGK 307 (456)
T ss_dssp TTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHH-HHHHH---TTC
T ss_pred EEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHH-HHHHH---cCC
Confidence 44567778889999999999 788887765 478999999999999875432 223333 33333 468
Q ss_pred eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
|+++++||+|+.... ..+++.+............+++++||++|.
T Consensus 308 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 354 (456)
T 4dcu_A 308 AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 354 (456)
T ss_dssp EEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred CEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence 999999999997532 223333332222222234689999999874
No 133
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.59 E-value=6e-15 Score=98.24 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=74.7
Q ss_pred ccCceEEEEEEC-CEEEEEEEcCCCcch----------HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566 10 TIGSNVEEVIWK-NIHFIMWDLGGQQSL----------RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL 78 (126)
Q Consensus 10 Ti~~~~~~~~~~-~~~~~i~Dt~G~~~~----------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
|.......+..+ +..+.+|||||+... ...+..+++.+|++++|+|+++..+..+...|+..+ ..
T Consensus 45 T~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l-~~--- 120 (308)
T 3iev_A 45 TRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KP--- 120 (308)
T ss_dssp CCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT-GG---
T ss_pred eeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH-Hh---
Confidence 333444445556 999999999998543 356677899999999999999888877766545544 33
Q ss_pred CCCeEEEEEecCCCC-CCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIK-NSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+. ...........+.... ....+++++||++|.
T Consensus 121 ~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~vSA~~g~ 167 (308)
T 3iev_A 121 LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVPISALKGA 167 (308)
T ss_dssp GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEECBTTTTB
T ss_pred cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEEEeCCCCC
Confidence 468999999999987 3222222222111110 122469999999873
No 134
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.3e-16 Score=97.37 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=67.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccC----CcEEEEEEECC-CcccHHHHHHHHHHHhCCC---CCCCCeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTN----TEFVILVIDST-DRERISLTKEELYKMLNHE---DLSKAAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~----~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~ 92 (126)
....+.+|||||++.+...+..+++. ++++++|+|++ ++.++.....|+..++... ...+.|+++++||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 56789999999999988777777765 89999999999 8889998888887776432 1257999999999999
Q ss_pred CCCCCHHHHHhh
Q psy6566 93 KNSMSPVEISNL 104 (126)
Q Consensus 93 ~~~~~~~~v~~~ 104 (126)
.+.....++...
T Consensus 169 ~~~~~~~~~~~~ 180 (193)
T 2ged_A 169 FTARPPSKIKDA 180 (193)
T ss_dssp TTCCCHHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 876555555443
No 135
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.58 E-value=9e-15 Score=102.37 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=61.6
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHH--------HhhccCCcEEEEEEECCCcccHHH---HHHHHHHHhCCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAW--------STYYTNTEFVILVIDSTDRERISL---TKEELYKMLNHEDL 78 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~~~~l~v~d~~~~~~~~~---~~~~~~~~~~~~~~ 78 (126)
|..+....+.+++..+.+|||||++.+...+ ..+++.+|++++|+|++++.++.. ...++..+
T Consensus 268 T~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------ 341 (476)
T 3gee_A 268 TRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH------ 341 (476)
T ss_dssp -----CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------
T ss_pred eEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------
Confidence 3446667788899999999999998776544 336789999999999999877753 33333222
Q ss_pred CCCeEEEEEecCCCCCCCCHHH--HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 79 SKAAVLIYANKQDIKNSMSPVE--ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 79 ~~~piilv~nK~D~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++|+||+|+........ +... ...+++++||++|+
T Consensus 342 ~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~vSAktg~ 383 (476)
T 3gee_A 342 PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIGISALNGD 383 (476)
T ss_dssp TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEECBTTTTB
T ss_pred CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEEEEECCCC
Confidence 3689999999999976532211 1111 01368999999874
No 136
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.57 E-value=1.6e-16 Score=98.32 Aligned_cols=118 Identities=12% Similarity=0.153 Sum_probs=73.1
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCC-----------CcchHHHHHhhccC-CcEEEEEEECCCcccHHHH-HHHHHH-
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGG-----------QQSLRAAWSTYYTN-TEFVILVIDSTDRERISLT-KEELYK- 71 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~~~-~~~~l~v~d~~~~~~~~~~-~~~~~~- 71 (126)
.+.|++......+.+. .+.+||||| ++.+...+..+++. ++++++++++.+..++..+ ..|...
T Consensus 29 ~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~ 106 (190)
T 2cxx_A 29 GKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRG 106 (190)
T ss_dssp SSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTT
T ss_pred CCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccC
Confidence 5667777666666666 689999999 77888888888776 6666556665556677666 233221
Q ss_pred -------HhCCCCCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 72 -------MLNHEDLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 72 -------~~~~~~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+.......++|+++++||+|+.... ...++...++..+. ....+++++||++|+
T Consensus 107 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 169 (190)
T 2cxx_A 107 EIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS-EIDKVFIPISAKFGD 169 (190)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG-GHHHHEEECCTTTCT
T ss_pred ccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh-ccCCcEEEEecCCCC
Confidence 1111111478999999999997642 11223333322110 012358999999874
No 137
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=5e-16 Score=96.09 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=72.9
Q ss_pred cCCccC--ceEEEEEECCEEEEEEEcCCCcchH------HHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIG--SNVEEVIWKNIHFIMWDLGGQQSLR------AAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~--~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
+.|++. .....+.+++..+.+|||||++.+. ..+..+++ .++++++++|.++ ++....|+..+..
T Consensus 36 ~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-- 110 (188)
T 2wjg_A 36 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME-- 110 (188)
T ss_dssp ECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--
T ss_pred CCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh--
Confidence 445555 4455666789999999999998874 45666664 5999999999764 5566666666644
Q ss_pred CCCCCeEEEEEecCCCCCC----CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 77 DLSKAAVLIYANKQDIKNS----MSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
.+.|+++++||+|+... ....++... .+++++++||++|
T Consensus 111 --~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 111 --MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLSAAKK 153 (188)
T ss_dssp --TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBGGGT
T ss_pred --cCCCEEEEEEhhhccccccchHHHHHHHHH--------hCCCeEEEEecCC
Confidence 46899999999997532 112222222 2357999999987
No 138
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.56 E-value=1.8e-15 Score=95.98 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=64.5
Q ss_pred CCEEEEEEEcCC----------CcchHHHHHhhccC---CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 21 KNIHFIMWDLGG----------QQSLRAAWSTYYTN---TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 21 ~~~~~~i~Dt~G----------~~~~~~~~~~~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
++..+.+||||| ++.+......+++. ++++++|+|+++..+.. ...++ ..+.. .+.|+++|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~-~~l~~---~~~p~i~v~ 151 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMI-EWFAP---TGKPIHSLL 151 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHH-HHHGG---GCCCEEEEE
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHH-HHHHh---cCCCEEEEE
Confidence 568899999999 45556666667665 78899999998753322 22233 33333 468999999
Q ss_pred ecCCCCCCCCHHHHHhhcCcCccc------CCceEEEEeeeeeCC
Q psy6566 88 NKQDIKNSMSPVEISNLLDLTSIK------KQQWHIQSCCALTGE 126 (126)
Q Consensus 88 nK~D~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~ 126 (126)
||+|+................... ....+++++||++|+
T Consensus 152 nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~ 196 (223)
T 4dhe_A 152 TKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRT 196 (223)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTB
T ss_pred eccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCc
Confidence 999987632211111111111111 356789999999873
No 139
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.56 E-value=3e-16 Score=109.67 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=61.6
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc---cHH---HHHHHHHHHhCCCCCCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE---RIS---LTKEELYKMLNHEDLSK 80 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~ 80 (126)
..+|++.....+..++..+.+|||||++.|......+++.+|++++|+|+++.. +|+ .....+.... . .+
T Consensus 105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~---~~ 180 (467)
T 1r5b_A 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-T---QG 180 (467)
T ss_dssp --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-H---TT
T ss_pred cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-H---cC
Confidence 457888777778888999999999999999998888899999999999998752 221 1222222221 1 35
Q ss_pred Ce-EEEEEecCCCCCCC-CH---HH----HHhhcCcC-ccc-CCceEEEEeeeeeCC
Q psy6566 81 AA-VLIYANKQDIKNSM-SP---VE----ISNLLDLT-SIK-KQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~p-iilv~nK~D~~~~~-~~---~~----v~~~~~~~-~~~-~~~~~~~~~Sa~~~~ 126 (126)
+| +++++||+|+.... +. +. +...+... -.. ...++++++||++|+
T Consensus 181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~ 237 (467)
T 1r5b_A 181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ 237 (467)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccc
Confidence 66 99999999996421 11 11 11111100 000 125789999999873
No 140
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.56 E-value=5.1e-16 Score=101.01 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=69.5
Q ss_pred CceEEEEEECCEEEEEEEcCCCcchHH----------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQSLRA----------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
+.....+.+++..+.+|||||+..+.. ....++ +.+|++++|+|+++.++.. .+...+.. .
T Consensus 37 ~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~---~l~~~l~~----~ 109 (256)
T 3iby_A 37 EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHL---YLTSQLFE----L 109 (256)
T ss_dssp EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHH---HHHHHHTT----S
T ss_pred EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHH---HHHHHHHH----c
Confidence 345566677889999999999977653 556677 8999999999998754433 33333332 3
Q ss_pred CCeEEEEEecCCCCCCC----CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNSM----SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++|+++++||+|+.... ....+... .+++++++||++|.
T Consensus 110 ~~pvilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 110 GKPVVVALNMMDIAEHRGISIDTEKLESL--------LGCSVIPIQAHKNI 152 (256)
T ss_dssp CSCEEEEEECHHHHHHTTCEECHHHHHHH--------HCSCEEECBGGGTB
T ss_pred CCCEEEEEEChhcCCcCCcHHHHHHHHHH--------cCCCEEEEECCCCC
Confidence 68999999999975421 12222222 24579999999873
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.54 E-value=8.7e-15 Score=100.67 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=72.1
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH--
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE-- 100 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-- 100 (126)
..+.+|||||++.|......++..+|++++|+|+++..++.....++..+... ...|+++++||+|+.+.....+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHH
Confidence 78999999999999999999999999999999999876677776666544322 2358999999999976321111
Q ss_pred --HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 101 --ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 101 --v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+...+... ....++++++||++|+
T Consensus 152 ~~i~~~l~~~--~~~~~~ii~vSA~~g~ 177 (403)
T 3sjy_A 152 RQIKQFTKGT--WAENVPIIPVSALHKI 177 (403)
T ss_dssp HHHHHHHTTS--TTTTCCEEECBTTTTB
T ss_pred HHHHHHHHhh--CCCCCEEEEEECCCCc
Confidence 22211111 1235689999999874
No 142
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.54 E-value=8.6e-15 Score=101.08 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=72.0
Q ss_pred CccCceEEEEEECCE-EEEEEEcCCCcchHHH-------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 9 PTIGSNVEEVIWKNI-HFIMWDLGGQQSLRAA-------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 9 pTi~~~~~~~~~~~~-~~~i~Dt~G~~~~~~~-------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
+|+......+.+.+. .+.+|||||++.+... ...+++.+|++++|+|+...+ ....|+..+.+. +
T Consensus 68 tT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~ 140 (423)
T 3qq5_A 68 TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM----E 140 (423)
T ss_dssp --CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT----T
T ss_pred eeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc----C
Confidence 455566777777554 9999999999776433 455789999999999983322 234444444332 6
Q ss_pred CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+|+++|+||+|+...... +....+ ....+++++++||++|.
T Consensus 141 ~piIvV~NK~Dl~~~~~~-~~~~~l----~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 141 IPFVVVVNKIDVLGEKAE-ELKGLY----ESRYEAKVLLVSALQKK 181 (423)
T ss_dssp CCEEEECCCCTTTTCCCT-HHHHHS----SCCTTCCCCCCSSCCTT
T ss_pred CCEEEEEeCcCCCCccHH-HHHHHH----HHHcCCCEEEEECCCCC
Confidence 899999999999875432 222222 23445689999999874
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.53 E-value=4.4e-14 Score=97.29 Aligned_cols=99 Identities=20% Similarity=0.133 Sum_probs=61.2
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC----H
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS----P 98 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~ 98 (126)
..+.+|||||++.|.......+..+|++++|+|+++........+++..+... ...|+++++||+|+..... .
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHH
Confidence 78999999999999988888888999999999998642122222222222111 2358999999999976422 2
Q ss_pred HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 99 VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 99 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++...+... ....++++++||++|+
T Consensus 158 ~~i~~~l~~~--~~~~~~~i~vSA~~g~ 183 (408)
T 1s0u_A 158 EQIKEFVKGT--IAENAPIIPISAHHEA 183 (408)
T ss_dssp HHHHHHHTTS--TTTTCCEEEC------
T ss_pred HHHHHHHhhc--CCCCCeEEEeeCCCCC
Confidence 2333332211 1235689999999874
No 144
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.53 E-value=1.1e-14 Score=100.20 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=74.4
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEe
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYAN 88 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~n 88 (126)
|+......+..++..+.+|||||++.|......+++.+|++++|+|+++... .....++..+.. .++| +++++|
T Consensus 62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviN 136 (405)
T 2c78_A 62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMN 136 (405)
T ss_dssp CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEE
T ss_pred CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEE
Confidence 4444444455577899999999999999988889999999999999987643 344555554432 3577 899999
Q ss_pred cCCCCCCCC-HHH----HHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 89 KQDIKNSMS-PVE----ISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 89 K~D~~~~~~-~~~----v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
|+|+..... .+. +...+..........+++++||++|
T Consensus 137 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g 178 (405)
T 2c78_A 137 KVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA 178 (405)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred CccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHh
Confidence 999975211 111 1111111111122468999999876
No 145
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.52 E-value=8.1e-15 Score=102.28 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=76.6
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc---cHH---HHHHHHHHHhCCCCCCCC
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE---RIS---LTKEELYKMLNHEDLSKA 81 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~ 81 (126)
..|++.....+..++..+.+|||||++.|...+..+++.+|++++|+|+++.. +|+ ....++.... . .++
T Consensus 70 GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~---~~v 145 (458)
T 1f60_A 70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T---LGV 145 (458)
T ss_dssp TCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H---TTC
T ss_pred CcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H---cCC
Confidence 46788777777778899999999999999999999999999999999998642 121 2333333222 2 345
Q ss_pred e-EEEEEecCCCCCCC--CHHHHHhhcC----cCcccCCceEEEEeeeeeCC
Q psy6566 82 A-VLIYANKQDIKNSM--SPVEISNLLD----LTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 82 p-iilv~nK~D~~~~~--~~~~v~~~~~----~~~~~~~~~~~~~~Sa~~~~ 126 (126)
| +++++||+|+.+.. ..+++..... ........++++++||++|+
T Consensus 146 ~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~ 197 (458)
T 1f60_A 146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGD 197 (458)
T ss_dssp CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCB
T ss_pred CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCc
Confidence 4 99999999997411 1111211111 00001124689999999873
No 146
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.51 E-value=5.3e-15 Score=96.30 Aligned_cols=99 Identities=22% Similarity=0.274 Sum_probs=68.6
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchHH------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQQSLRA------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL 84 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 84 (126)
.....+..++..+.+|||||+..+.. ....++ ..+|++++|+|+++.++ ...|+.++.+ .++|++
T Consensus 42 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvi 114 (258)
T 3a1s_A 42 KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVI 114 (258)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEE
T ss_pred EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEE
Confidence 34444555789999999999987753 334555 58999999999987654 3345555544 368999
Q ss_pred EEEecCCCCCC----CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 85 IYANKQDIKNS----MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 85 lv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++||+|+... .....+... .+++++++||++|.
T Consensus 115 lv~NK~Dl~~~~~i~~~~~~l~~~--------lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 115 LAMTAIDEAKKTGMKIDRYELQKH--------LGIPVVFTSSVTGE 152 (258)
T ss_dssp EEEECHHHHHHTTCCBCHHHHHHH--------HCSCEEECCTTTCT
T ss_pred EEEECcCCCCccchHHHHHHHHHH--------cCCCEEEEEeeCCc
Confidence 99999997531 112223322 24679999999874
No 147
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.1e-14 Score=104.65 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=75.2
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc---c---HHHHHHHHHHHhCCCCCCCCe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE---R---ISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~p 82 (126)
.|+......+...+..+.+|||||++.|......+++.+|++|+|+|+++.. + .......+... ... ...|
T Consensus 231 iTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~ 307 (611)
T 3izq_1 231 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHN 307 (611)
T ss_dssp TCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCE
T ss_pred eeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCe
Confidence 4666666777778899999999999999999999999999999999998631 0 01222222222 221 2346
Q ss_pred EEEEEecCCCCCCC--CHHHHHhhcCc----CcccCCceEEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSM--SPVEISNLLDL----TSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~--~~~~v~~~~~~----~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.+.. ..+++...+.. .-.....++++++||++|+
T Consensus 308 iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~ 357 (611)
T 3izq_1 308 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGE 357 (611)
T ss_dssp EEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCT
T ss_pred EEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCC
Confidence 99999999997621 11122211110 0011225689999999874
No 148
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.51 E-value=1.9e-13 Score=96.80 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=66.5
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
.|+......+..++..+.+|||||++.|...+..+++.+|++++|+|+++........ +|..+.. .++|+++++|
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviN 142 (528)
T 3tr5_A 68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFIN 142 (528)
T ss_dssp CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEE
T ss_pred eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEe
Confidence 4556666777779999999999999999999999999999999999999866555443 4444433 3689999999
Q ss_pred cCCCCCC
Q psy6566 89 KQDIKNS 95 (126)
Q Consensus 89 K~D~~~~ 95 (126)
|+|+...
T Consensus 143 K~Dl~~~ 149 (528)
T 3tr5_A 143 KMDRDTR 149 (528)
T ss_dssp CTTSCCS
T ss_pred CCCCccc
Confidence 9999764
No 149
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.51 E-value=2.3e-14 Score=98.39 Aligned_cols=112 Identities=24% Similarity=0.169 Sum_probs=73.7
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEE
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYA 87 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~ 87 (126)
.|++.....+..++..+.+|||||++.|......+++.+|++++|+|+++.... ....++..+. . .++| +++++
T Consensus 52 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~-~---~~vp~iivvi 126 (397)
T 1d2e_A 52 ITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-QTREHLLLAR-Q---IGVEHVVVYV 126 (397)
T ss_dssp EEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHH-H---TTCCCEEEEE
T ss_pred cEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHH-H---cCCCeEEEEE
Confidence 455554444555778999999999999998888899999999999999875433 3334443332 2 3578 78999
Q ss_pred ecCCCCCCCC-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 88 NKQDIKNSMS-PV----EISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 88 nK~D~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
||+|+..... .+ ++.+.+.........++++++||++|
T Consensus 127 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g 169 (397)
T 1d2e_A 127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA 169 (397)
T ss_dssp ECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred ECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhc
Confidence 9999975211 11 11111111111122468999999874
No 150
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.50 E-value=3.6e-15 Score=97.83 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=66.5
Q ss_pred CceEEEEEECCEEEEEEEcCCCcchH----------HHHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQSLR----------AAWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
......+...+..+.+|||||+..+. ..+..++ +.+|++++|+|+++.++.. .+...+.+ .
T Consensus 39 ~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~----~ 111 (274)
T 3i8s_A 39 ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLE----L 111 (274)
T ss_dssp EEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHH----H
T ss_pred EEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHH---HHHHHHHh----c
Confidence 34445566678899999999987765 2334443 7999999999998755443 33333332 2
Q ss_pred CCeEEEEEecCCCCCCC----CHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 80 KAAVLIYANKQDIKNSM----SPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 80 ~~piilv~nK~D~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
++|+++++||+|+.... ....+... .+++++++||++|
T Consensus 112 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~~i~~SA~~g 153 (274)
T 3i8s_A 112 GIPCIVALNMLDIAEKQNIRIEIDALSAR--------LGCPVIPLVSTRG 153 (274)
T ss_dssp TCCEEEEEECHHHHHHTTEEECHHHHHHH--------HTSCEEECCCGGG
T ss_pred CCCEEEEEECccchhhhhHHHHHHHHHHh--------cCCCEEEEEcCCC
Confidence 68999999999975421 11222222 2457999999987
No 151
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.50 E-value=1.5e-13 Score=98.50 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=69.6
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI 101 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v 101 (126)
+..+.+|||||++.|...+..+++.+|++++|+|+++..+......|.. ... .++|+++++||+|+.+.. .+++
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~-~~~----~~ipiIvViNKiDl~~a~-~~~v 143 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT-AME----MDLEVVPVLNKIDLPAAD-PERV 143 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHH-HHH----TTCEEEEEEECTTSTTCC-HHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEeeeccCccccc-HHHH
Confidence 3789999999999999999999999999999999998766665554433 332 368999999999997643 2322
Q ss_pred HhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 102 SNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...+.... .....+++++||++|.
T Consensus 144 ~~ei~~~l-g~~~~~vi~vSAktg~ 167 (599)
T 3cb4_D 144 AEEIEDIV-GIDATDAVRCSAKTGV 167 (599)
T ss_dssp HHHHHHHT-CCCCTTCEEECTTTCT
T ss_pred HHHHHHHh-CCCcceEEEeecccCC
Confidence 22211110 0111137999999873
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.50 E-value=2e-13 Score=97.78 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=69.7
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS 102 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~ 102 (126)
..+.+|||||++.|...+..+++.+|++++|+|+++..+.+....|.. ... .++|+++++||+|+.+.. .+++.
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~-a~~----~~ipiIvviNKiDl~~a~-~~~v~ 146 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWK-AVE----QDLVIIPVINKIDLPSAD-VDRVK 146 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHH-HHH----TTCEEEEEEECTTSTTCC-HHHHH
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHH-HHH----CCCCEEEEEeccCccccC-HHHHH
Confidence 789999999999999999999999999999999998777666555433 332 468999999999997643 33322
Q ss_pred hhcCcCcccCCceEEEEeeeeeCC
Q psy6566 103 NLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
..+.... .....+++++||++|.
T Consensus 147 ~el~~~l-g~~~~~vi~vSAktg~ 169 (600)
T 2ywe_A 147 KQIEEVL-GLDPEEAILASAKEGI 169 (600)
T ss_dssp HHHHHTS-CCCGGGCEECBTTTTB
T ss_pred HHHHHhh-CCCcccEEEEEeecCC
Confidence 2221110 0111247999999873
No 153
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.50 E-value=1.3e-14 Score=101.73 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=72.8
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
..|++.....+.+++..+.+|||||++.|......++..+|++++|+|+++... .....++..+ +. .++|.++++
T Consensus 58 GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~Ivvi 132 (482)
T 1wb1_A 58 GITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVI 132 (482)
T ss_dssp ------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEE
T ss_pred ccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEE
Confidence 357777777788889999999999999999998889999999999999987321 1222222222 22 357889999
Q ss_pred ecCCCCCCCCHHHHHhhcCcCccc---CCceEEEEeeeeeCC
Q psy6566 88 NKQDIKNSMSPVEISNLLDLTSIK---KQQWHIQSCCALTGE 126 (126)
Q Consensus 88 nK~D~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~ 126 (126)
||+|+.++...+++.......... ....+++++||++|+
T Consensus 133 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~ 174 (482)
T 1wb1_A 133 TKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF 174 (482)
T ss_dssp ECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCT
T ss_pred ECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCC
Confidence 999997632112222211110000 115689999999874
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.50 E-value=2.9e-14 Score=97.05 Aligned_cols=110 Identities=10% Similarity=-0.000 Sum_probs=76.6
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-E
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-L 84 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-i 84 (126)
...+|++.....+..++..+.+|||||+++|.......++.+|++++|+| + ........+++..+.. .++|. +
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~----~~i~~~i 116 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDL----LGFKHGI 116 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHH----TTCCEEE
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHH----cCCCeEE
Confidence 34578888877777788899999999999998888888999999999999 4 3445556665554432 24666 8
Q ss_pred EEEe-cCCCCCCCCHH----HHHhhcCcCcccCCceEEEE--eeeee
Q psy6566 85 IYAN-KQDIKNSMSPV----EISNLLDLTSIKKQQWHIQS--CCALT 124 (126)
Q Consensus 85 lv~n-K~D~~~~~~~~----~v~~~~~~~~~~~~~~~~~~--~Sa~~ 124 (126)
+++| |+|+ +....+ ++.+.+... ....+++++ +||++
T Consensus 117 vvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 117 IALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSA 160 (370)
T ss_dssp EEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTS
T ss_pred EEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEeccccccc
Confidence 8888 9999 421111 122222111 113478999 99998
No 155
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.49 E-value=1.4e-14 Score=97.67 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=75.7
Q ss_pred CccCceEEEEEECC-EEEEEEEcCCCcc----hHHHHHhh---ccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCC-
Q psy6566 9 PTIGSNVEEVIWKN-IHFIMWDLGGQQS----LRAAWSTY---YTNTEFVILVIDSTD---RERISLTKEELYKMLNHE- 76 (126)
Q Consensus 9 pTi~~~~~~~~~~~-~~~~i~Dt~G~~~----~~~~~~~~---~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~- 76 (126)
+|+..+...+.+.+ ..+.+|||||+.. +..+...+ ++.++++++|+|+++ ++++++...|+.++....
T Consensus 191 tTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~ 270 (342)
T 1lnz_A 191 TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL 270 (342)
T ss_dssp SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred cccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh
Confidence 56666666677754 8999999999533 22233333 456999999999998 778888877776665432
Q ss_pred CCCCCeEEEEEecCCCCCCC-CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKNSM-SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...++|+++++||+|+.... ...++...+.. ..+++++||++++
T Consensus 271 ~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 271 RLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVTRE 315 (342)
T ss_dssp STTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCCSS
T ss_pred hhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCCCc
Confidence 23579999999999987531 01122222221 1568999999874
No 156
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.49 E-value=3e-14 Score=98.86 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=63.4
Q ss_pred CCccCceE----EEEEECCEEEEEEEcCCCc--------chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC
Q psy6566 8 SPTIGSNV----EEVIWKNIHFIMWDLGGQQ--------SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH 75 (126)
Q Consensus 8 ~pTi~~~~----~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~ 75 (126)
.+|.|... ..+.+++..+.+|||||++ .+..++..+++.||++++|+|+.+..+..+ .++...++.
T Consensus 32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~ 109 (436)
T 2hjg_A 32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR 109 (436)
T ss_dssp ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT
T ss_pred cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH
Confidence 44555432 3333377899999999986 677788889999999999999987655543 356666654
Q ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 76 EDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+.... .+ ...+. ..++ +++++||++|.
T Consensus 110 ---~~~pvilv~NK~D~~~~~--~~-----~~~~~-~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 110 ---TKKPVVLAVNKLDNTEMR--AN-----IYDFY-SLGFGEPYPISGTHGL 150 (436)
T ss_dssp ---CCSCEEEEEECCCC-------C-----CCSSG-GGSSCCCEECBTTTTB
T ss_pred ---cCCCEEEEEECccCccch--hh-----HHHHH-HcCCCCeEEEeCcCCC
Confidence 578999999999986531 10 11111 1222 58999999873
No 157
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=1.5e-13 Score=95.52 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=69.4
Q ss_pred CceEEEEEECCEEEEEEEcCCCcc---------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQS---------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 82 (126)
......+.+++..+.+|||||++. +..++..+++.||++++|+|+.+..+..+ .++...++. .++|
T Consensus 38 d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p 112 (439)
T 1mky_A 38 DPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVD 112 (439)
T ss_dssp CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCC
T ss_pred ceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCC
Confidence 355567777899999999999764 45667888999999999999987544432 233333333 3689
Q ss_pred EEEEEecCCCCCCCCHHHH-HhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 83 VLIYANKQDIKNSMSPVEI-SNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 83 iilv~nK~D~~~~~~~~~v-~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
+++++||+|+.... ..+. .+. . ..++ +++++||++|.
T Consensus 113 ~ilv~NK~D~~~~~-~~~~~~~~-----~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 113 TILVANKAENLREF-EREVKPEL-----Y-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp EEEEEESCCSHHHH-HHHTHHHH-----G-GGSSCSCEECBTTTTB
T ss_pred EEEEEeCCCCcccc-HHHHHHHH-----H-hcCCCCEEEEeccCCC
Confidence 99999999975310 0111 111 1 1222 47899999873
No 158
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.47 E-value=1.4e-14 Score=94.76 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=73.1
Q ss_pred cCCccC--ceEEEEEECCEEEEEEEcCCCcchHH------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 7 TSPTIG--SNVEEVIWKNIHFIMWDLGGQQSLRA------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 7 ~~pTi~--~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
..|+++ .....+.+++..+.+|||||+..+.. .+..++ ..+|++++|+|+++. +....++.++...
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~- 107 (271)
T 3k53_A 32 NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM- 107 (271)
T ss_dssp ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT-
T ss_pred CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc-
Confidence 345555 44455666888999999999987765 566666 789999999998764 3445556666544
Q ss_pred CCCCCeEEEEEecCCCCC----CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 77 DLSKAAVLIYANKQDIKN----SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 77 ~~~~~piilv~nK~D~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
...|+++++||+|+.. ......+.+.+ +++++++||++|.
T Consensus 108 --~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa~~g~ 151 (271)
T 3k53_A 108 --EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNAKKGE 151 (271)
T ss_dssp --TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBGGGTB
T ss_pred --CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEeCCCC
Confidence 3389999999999643 11222333322 4579999999873
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.46 E-value=7.8e-14 Score=96.11 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=64.6
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC----H
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS----P 98 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~ 98 (126)
..+.+|||||++.|.......+..+|++++|+|+++..........+..+... ...|+++++||+|+..... .
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHH
Confidence 78999999999999888877888999999999998542122222222222111 2358999999999976321 1
Q ss_pred HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 99 VEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 99 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++...+... ....++++++||++|+
T Consensus 160 ~~i~~~l~~~--~~~~~~~i~vSA~~g~ 185 (410)
T 1kk1_A 160 RQIKEFIEGT--VAENAPIIPISALHGA 185 (410)
T ss_dssp HHHHHHHTTS--TTTTCCEEECBTTTTB
T ss_pred HHHHHHHHhc--CcCCCeEEEeeCCCCC
Confidence 1222222211 1235789999999873
No 160
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.46 E-value=6.2e-15 Score=96.64 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=68.7
Q ss_pred CccCceEEEEEEC-CEEEEEEEcCCCcchH------HHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566 9 PTIGSNVEEVIWK-NIHFIMWDLGGQQSLR------AAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79 (126)
Q Consensus 9 pTi~~~~~~~~~~-~~~~~i~Dt~G~~~~~------~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
|.+.+......+. +..+.+|||||++.+. ..+..++. .+|++++|+|+++.++ ...|..++.+ .
T Consensus 34 pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~---~~~~~~~l~~----~ 106 (272)
T 3b1v_A 34 PGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLER---NLYLTTQLIE----T 106 (272)
T ss_dssp SCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH----T
T ss_pred CCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHh---HHHHHHHHHh----c
Confidence 4333333344443 6789999999998875 45666665 6999999999987543 3445555543 4
Q ss_pred CCeEEEEEecCCCCCC----CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 80 KAAVLIYANKQDIKNS----MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 80 ~~piilv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++|+++++||+|+... .....+... .+++++++||++|+
T Consensus 107 ~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~SA~~g~ 149 (272)
T 3b1v_A 107 GIPVTIALNMIDVLDGQGKKINVDKLSYH--------LGVPVVATSALKQT 149 (272)
T ss_dssp CSCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBTTTTB
T ss_pred CCCEEEEEEChhhCCcCCcHHHHHHHHHH--------cCCCEEEEEccCCC
Confidence 6899999999997531 112223222 24579999999873
No 161
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.45 E-value=2.6e-13 Score=92.00 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=75.5
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchH---------HHHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHhCCCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR---------AAWSTYYTNTEFVILVIDSTDRE--RISLTKEELYKMLNHED 77 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~ 77 (126)
+|.+.....+..++..+.+|||+|..... .....+...++++++|+|+++.. +++....|+..+....
T Consensus 200 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~- 278 (357)
T 2e87_A 200 TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF- 278 (357)
T ss_dssp CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-
T ss_pred eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-
Confidence 45556666666688999999999985431 12223456799999999988776 6777777777665532
Q ss_pred CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.+.|+++++||+|+......++.... +...+++++++||++|+
T Consensus 279 -~~~piilV~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~iSA~~g~ 321 (357)
T 2e87_A 279 -KDLPFLVVINKIDVADEENIKRLEKF-----VKEKGLNPIKISALKGT 321 (357)
T ss_dssp -TTSCEEEEECCTTTCCHHHHHHHHHH-----HHHTTCCCEECBTTTTB
T ss_pred -CCCCEEEEEECcccCChHHHHHHHHH-----HHhcCCCeEEEeCCCCc
Confidence 27899999999999763211111111 11235679999999874
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.44 E-value=2.9e-13 Score=94.51 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=61.5
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchHHHHH--------hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQQSLRAAWS--------TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL 84 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 84 (126)
+....+.+++..+.+|||+|.+.+...++ .+++.+|++++|+|.+++.+... ..++..+ ...|++
T Consensus 262 ~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~pii 334 (462)
T 3geh_A 262 VVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLI 334 (462)
T ss_dssp HHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEE
T ss_pred EEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEE
Confidence 55577888999999999999876654433 35788999999999998766554 3334433 236999
Q ss_pred EEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+|+||+|+..... +. .. ..+ ....+++++||++|+
T Consensus 335 vV~NK~Dl~~~~~---~~-~~-~~~--~~~~~~i~iSAktg~ 369 (462)
T 3geh_A 335 LVMNKIDLVEKQL---IT-SL-EYP--ENITQIVHTAAAQKQ 369 (462)
T ss_dssp EEEECTTSSCGGG---ST-TC-CCC--TTCCCEEEEBTTTTB
T ss_pred EEEECCCCCcchh---hH-HH-HHh--ccCCcEEEEECCCCC
Confidence 9999999976321 11 11 111 134579999999873
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.43 E-value=2.5e-14 Score=100.50 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=72.0
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
|+.+....+..++..+.+|||||++.|..++...+..+|++++|+|+++. .+.+. +.... . .++|++++
T Consensus 38 T~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~----l~~~~-~---~~vPiIVv 109 (501)
T 1zo1_I 38 TQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA----IQHAK-A---AQVPVVVA 109 (501)
T ss_dssp CCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH----HHHHH-H---TTCCEEEE
T ss_pred eEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH----HHHHH-h---cCceEEEE
Confidence 33344444455677899999999999999988889999999999998873 33332 32222 1 46899999
Q ss_pred EecCCCCCCCCHHHHHhhcCcC--cccC--CceEEEEeeeeeCC
Q psy6566 87 ANKQDIKNSMSPVEISNLLDLT--SIKK--QQWHIQSCCALTGE 126 (126)
Q Consensus 87 ~nK~D~~~~~~~~~v~~~~~~~--~~~~--~~~~~~~~Sa~~~~ 126 (126)
+||+|+.+... +.+...+... .... ..++++++||++|.
T Consensus 110 iNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 110 VNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999975311 1222221110 1111 23789999999874
No 164
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.43 E-value=1e-14 Score=103.18 Aligned_cols=111 Identities=18% Similarity=0.113 Sum_probs=75.1
Q ss_pred cCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 11 IGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 11 i~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
..+....+.+ ++..+.+|||||++.|..++..+++.+|++++|+|+++...... ..++..+.. .++|+++++||
T Consensus 39 ~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt-~e~l~~~~~----~~vPiIVViNK 113 (537)
T 3izy_P 39 QHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQT-VESIQHAKD----AHVPIVLAINK 113 (537)
T ss_dssp CCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHH-HHHHHHHHT----TTCCEEECCBS
T ss_pred EEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHH-HHHHHHHHH----cCCcEEEEEec
Confidence 3344555555 56789999999999999999999999999999999988554433 334444432 46899999999
Q ss_pred CCCCCCCC---HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 90 QDIKNSMS---PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 90 ~D~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+|+.+... ..++.............++++++||++|+
T Consensus 114 iDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~ 153 (537)
T 3izy_P 114 CDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE 153 (537)
T ss_dssp GGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC
T ss_pred ccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC
Confidence 99875211 11222111101111235789999999884
No 165
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.41 E-value=2.2e-13 Score=94.59 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=68.7
Q ss_pred ceEEEEEECCEEEEEEEcCCCcchHHHH------------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 13 SNVEEVIWKNIHFIMWDLGGQQSLRAAW------------STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
.....+.+++..+.+|||+|+++..... ..+++.++++++++|+++..+..+. .+...+.. .+
T Consensus 218 ~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~ 292 (439)
T 1mky_A 218 PVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RG 292 (439)
T ss_dssp -CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TT
T ss_pred ceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cC
Confidence 4456777888899999999986543321 3457789999999999876665543 23333333 46
Q ss_pred CeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|+++++||+|+.... ...++...+...+......+++++||++|.
T Consensus 293 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 340 (439)
T 1mky_A 293 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW 340 (439)
T ss_dssp CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTB
T ss_pred CCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCC
Confidence 8999999999986532 123333222222222334579999999874
No 166
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.41 E-value=3.9e-13 Score=101.55 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=70.2
Q ss_pred EEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCCC
Q psy6566 17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKNS 95 (126)
Q Consensus 17 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~ 95 (126)
.+..++..+.+|||||++.|......+++.+|++++|+|+++... .+...++..+.. .++| +++++||+|+.+.
T Consensus 353 ~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 353 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ----VGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp EEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH----HTCSCEEEEEECCTTCCC
T ss_pred EEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH----cCCCeEEEEEeecccccc
Confidence 344477899999999999999988889999999999999987532 233444433322 3577 7899999999752
Q ss_pred CC-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 96 MS-PV----EISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 96 ~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
.. .+ ++...+.........++++++||++|
T Consensus 428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG 462 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKA 462 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTT
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEEEEEeccC
Confidence 11 11 11111111111123568999999987
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.40 E-value=3.4e-13 Score=96.61 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+.+|||||++.|..++..+++.+|++++|+|+++ +.+++.+. .+. . .++|+++++||+|+..
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~-~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR-M---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHH-H---TTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHH-H---cCCeEEEEeccccccc
Confidence 69999999999999998888999999999999998 45554333 222 2 4689999999999864
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.37 E-value=2.3e-12 Score=87.56 Aligned_cols=116 Identities=21% Similarity=0.182 Sum_probs=72.0
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCC---------cchHHHHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHhCC
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQ---------QSLRAAWSTYYTNTEFVILVIDSTDRE--RISLTKEELYKMLNH 75 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~ 75 (126)
+.+|.+.....+.+.+..+.+|||+|. +.|...+. .+..+|++++|+|++++. ..+.... +...++.
T Consensus 210 ~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~ 287 (364)
T 2qtf_A 210 LFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQS-SFEILRE 287 (364)
T ss_dssp ----CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHH
T ss_pred cccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHH-HHHHHHH
Confidence 456777888889998899999999996 33444444 478899999999998875 3433322 3333332
Q ss_pred CCCCCCeEEEEEecCCCCCCCCHHH---HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 76 EDLSKAAVLIYANKQDIKNSMSPVE---ISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
....+.|+++|+||+|+.... ... ....+.... .....+++++||++|+
T Consensus 288 l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l-~~~~~~~~~~SA~~g~ 339 (364)
T 2qtf_A 288 IGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKEL-YSPIFDVIPISALKRT 339 (364)
T ss_dssp HTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHH-CSCEEEEEECBTTTTB
T ss_pred hCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHh-cCCCCcEEEEECCCCc
Confidence 223578999999999987532 111 110000000 0123468999999873
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.37 E-value=4.1e-12 Score=90.06 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=61.9
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
|+......+..++..+.+|||||++.|......+++.+|++++|+|+++.... ....++..+ .. .++|+++++||
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~~---~~ipiivviNK 143 (529)
T 2h5e_A 69 SITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-RL---RDTPILTFMNK 143 (529)
T ss_dssp -CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-TT---TTCCEEEEEEC
T ss_pred ceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-HH---cCCCEEEEEcC
Confidence 33344456667899999999999999998888899999999999999875432 233334333 22 46899999999
Q ss_pred CCCCCCC
Q psy6566 90 QDIKNSM 96 (126)
Q Consensus 90 ~D~~~~~ 96 (126)
+|+....
T Consensus 144 ~Dl~~~~ 150 (529)
T 2h5e_A 144 LDRDIRD 150 (529)
T ss_dssp TTSCCSC
T ss_pred cCCcccc
Confidence 9997643
No 170
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.35 E-value=7.4e-13 Score=92.38 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=62.5
Q ss_pred CCEEEEEEEcCC--------CcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGG--------QQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G--------~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
.+..+.+||||| ++.+...+..+++.+|++++|+|..+. +.....++...++. .+.|+++++||+|+
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccc
Confidence 678999999999 777888889999999999999997653 33344556666665 57899999999998
Q ss_pred CCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 93 KNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 93 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.... ....+.. . ...-..+.+||++|.
T Consensus 144 ~~~~--~~~~e~~----~-lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 144 TEMR--ANIYDFY----S-LGFGEPYPISGTHGL 170 (456)
T ss_dssp ---------CCSG----G-GSSSSEEECCTTTCT
T ss_pred hhhh--hhHHHHH----H-cCCCceEEeeccccc
Confidence 6421 1111111 1 111135689998873
No 171
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.34 E-value=1.2e-11 Score=90.04 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=65.4
Q ss_pred ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85 (126)
Q Consensus 6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil 85 (126)
.+.+|++.....+..++..+.+|||||+..|...+..+++.+|++++|+|+++..+...... |..+.. .++|+++
T Consensus 60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~iv 134 (691)
T 1dar_A 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIA 134 (691)
T ss_dssp -------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEE
T ss_pred hcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEE
Confidence 34678887777888899999999999999999999999999999999999998776665543 444432 3689999
Q ss_pred EEecCCCCCC
Q psy6566 86 YANKQDIKNS 95 (126)
Q Consensus 86 v~nK~D~~~~ 95 (126)
++||+|+...
T Consensus 135 viNKiD~~~~ 144 (691)
T 1dar_A 135 FANKMDKTGA 144 (691)
T ss_dssp EEECTTSTTC
T ss_pred EEECCCcccC
Confidence 9999999764
No 172
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.1e-13 Score=93.98 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=55.3
Q ss_pred CCccCceEEEEEE--CC--EEEEEEEcCCC-------cchHHHHH-------hhccCC-------------cEEEEEEEC
Q psy6566 8 SPTIGSNVEEVIW--KN--IHFIMWDLGGQ-------QSLRAAWS-------TYYTNT-------------EFVILVIDS 56 (126)
Q Consensus 8 ~pTi~~~~~~~~~--~~--~~~~i~Dt~G~-------~~~~~~~~-------~~~~~~-------------~~~l~v~d~ 56 (126)
.||+++....+.+ .+ ..+.+|||+|. +.+..++. .|++.+ ++++|+++.
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 3677766555444 33 47999999999 66666554 555433 456666654
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHh--hcCcCcccCCceEEEEeeeeeC
Q psy6566 57 TDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISN--LLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+ ..++......+...+. .++|+++|+||+|+... .++.. ......+...+++++++||++|
T Consensus 156 ~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~---~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~ 218 (361)
T 2qag_A 156 F-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL---KERERLKKRILDEIEEHNIKIYHLPDAES 218 (361)
T ss_dssp S-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH---HHHHHHHHHHHHHTTCC-CCSCCCC----
T ss_pred C-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH---HHHHHHHHHHHHHHHHCCCCEEeCCCcCC
Confidence 2 3345444433333332 57899999999998753 33322 1122334455788999999876
No 173
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.33 E-value=3.8e-12 Score=84.54 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=63.5
Q ss_pred EEEECCEEEEEEEcCCCc-chHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 17 EVIWKNIHFIMWDLGGQQ-SLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 17 ~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
.+..++..+.+|||||.. .... ....+++.+|++++|+|+++ +.....++...+.. .+.|+++++
T Consensus 50 i~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvl 123 (301)
T 1ega_A 50 IHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAV 123 (301)
T ss_dssp EEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEE
T ss_pred EEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEE
Confidence 344478899999999997 3221 22455788999999999876 22333344444443 468999999
Q ss_pred ecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566 88 NKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE 126 (126)
Q Consensus 88 nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 126 (126)
||+|+... ...+..... .+.+..++ .++.+||++|.
T Consensus 124 NK~D~~~~--~~~~~~~l~-~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 124 NKVDNVQE--KADLLPHLQ-FLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp ESTTTCCC--HHHHHHHHH-HHHTTSCCSEEEECCTTTTT
T ss_pred ECcccCcc--HHHHHHHHH-HHHHhcCcCceEEEECCCCC
Confidence 99998762 122211111 11112233 68999998763
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.32 E-value=3.2e-14 Score=101.96 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=53.9
Q ss_pred CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc---c---HHHHHHHHHHHhCCCCCCCCe
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE---R---ISLTKEELYKMLNHEDLSKAA 82 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~p 82 (126)
.|+......+..++..+.||||||++.|......+++.+|++|+|+|+++.. . ......++..+.. .++|
T Consensus 241 iTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip 316 (592)
T 3mca_A 241 VTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGIS 316 (592)
T ss_dssp ------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCC
T ss_pred eeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCC
Confidence 3555555666667889999999999999888888889999999999987531 0 1112222222221 2455
Q ss_pred -EEEEEecCCCCCCC--CHHH----HHhhc-CcCcccCCceEEEEeeeeeCC
Q psy6566 83 -VLIYANKQDIKNSM--SPVE----ISNLL-DLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 83 -iilv~nK~D~~~~~--~~~~----v~~~~-~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+++++||+|+.+.. .... +...+ ...-.....++++++||++|.
T Consensus 317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~ 368 (592)
T 3mca_A 317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT 368 (592)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS
T ss_pred eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc
Confidence 99999999987521 1111 22222 111112235689999999884
No 175
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.30 E-value=2.3e-12 Score=84.43 Aligned_cols=112 Identities=12% Similarity=0.156 Sum_probs=60.2
Q ss_pred CCccCceEEEEEE--CC--EEEEEEEcCCC-------cchHHHH-------Hhhcc-------------CCcEEEEEEEC
Q psy6566 8 SPTIGSNVEEVIW--KN--IHFIMWDLGGQ-------QSLRAAW-------STYYT-------------NTEFVILVIDS 56 (126)
Q Consensus 8 ~pTi~~~~~~~~~--~~--~~~~i~Dt~G~-------~~~~~~~-------~~~~~-------------~~~~~l~v~d~ 56 (126)
.||+++......+ ++ ..+.+|||||. +.+..+. ..|++ .+|+++++++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 7888877777666 33 59999999997 3344444 33433 37899999977
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 57 TDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+..........++..+ .. ++|+++|+||+|+.............. ......+++++.+||+++
T Consensus 126 ~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~-~~l~~~~i~v~~~sa~~~ 188 (274)
T 3t5d_A 126 SGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPEECQQFKKQIM-KEIQEHKIKIYEFPETDD 188 (274)
T ss_dssp CCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHHHHHHHHHHHH-HHHHHTTCCCCCC-----
T ss_pred CCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHHHHHHHHHHHH-HHHHHcCCeEEcCCCCCC
Confidence 6533222223334433 32 689999999999865311111111111 111234556777888765
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.30 E-value=9.2e-12 Score=82.15 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=63.5
Q ss_pred CEEEEEEEcCCCc-------------chHHHHHhhccCCcEEE-EEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 22 NIHFIMWDLGGQQ-------------SLRAAWSTYYTNTEFVI-LVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 22 ~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~l-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
...+.+|||||.. .+..+...|++.++.++ +|+|+++..+..+...++..+ .. .+.|+++|+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~i~V~ 199 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVI 199 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH-CT---TCSSEEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh-CC---CCCeEEEEE
Confidence 4789999999953 45667788898888776 789988754443333333333 32 468999999
Q ss_pred ecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 88 NKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 88 nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
||+|+..... ..+..... .........+++++||++|+
T Consensus 200 NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTT
T ss_pred EccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhcc
Confidence 9999875322 12221110 00111122478999999874
No 177
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=1.9e-11 Score=89.15 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=65.1
Q ss_pred cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
..+|+......+.+++..+.+|||||+..|...+..+++.+|++++|+|+++..+..... .|..+.. .++|++++
T Consensus 59 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilv 133 (693)
T 2xex_A 59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVF 133 (693)
T ss_dssp -----CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEE
T ss_pred cCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEE
Confidence 346777667777889999999999999999999999999999999999999876665543 3444433 36899999
Q ss_pred EecCCCCCC
Q psy6566 87 ANKQDIKNS 95 (126)
Q Consensus 87 ~nK~D~~~~ 95 (126)
+||+|+...
T Consensus 134 iNK~Dl~~~ 142 (693)
T 2xex_A 134 VNKMDKLGA 142 (693)
T ss_dssp EECTTSTTC
T ss_pred EECCCcccc
Confidence 999999764
No 178
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.26 E-value=1.2e-12 Score=86.98 Aligned_cols=89 Identities=20% Similarity=0.143 Sum_probs=62.7
Q ss_pred CCcchHHHHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcc
Q psy6566 32 GQQSLRAAWSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI 110 (126)
Q Consensus 32 G~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~ 110 (126)
.++++..+.+.+++++|++++|+|+++++ ++..+..|+..+- . .++|+++|+||+|+.+........+. ....
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~-~---~~~~~ilV~NK~DL~~~~~v~~~~~~--~~~~ 138 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYE-Y---FKVEPVIVFNKIDLLNEEEKKELERW--ISIY 138 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHH-H---TTCEEEEEECCGGGCCHHHHHHHHHH--HHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHH-h---CCCCEEEEEEcccCCCccccHHHHHH--HHHH
Confidence 37778777788999999999999999886 8887777776543 2 57899999999999753100001111 1111
Q ss_pred cCCceEEEEeeeeeCC
Q psy6566 111 KKQQWHIQSCCALTGE 126 (126)
Q Consensus 111 ~~~~~~~~~~Sa~~~~ 126 (126)
+..+++++++||++|+
T Consensus 139 ~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 139 RDAGYDVLKVSAKTGE 154 (302)
T ss_dssp HHTTCEEEECCTTTCT
T ss_pred HHCCCeEEEEECCCCC
Confidence 2235689999999874
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.23 E-value=1.2e-10 Score=85.04 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=64.2
Q ss_pred CCccCceEEEEEECC-------EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566 8 SPTIGSNVEEVIWKN-------IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~-------~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
.+|+......+.+++ ..+.+|||||+..|...+..+++.+|++++|+|+++....... ..|..... .+
T Consensus 60 giTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ 134 (704)
T 2rdo_7 60 GITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YK 134 (704)
T ss_pred CceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cC
Confidence 346665556666666 8999999999999999999999999999999999876544333 34444432 46
Q ss_pred CeEEEEEecCCCCCC
Q psy6566 81 AAVLIYANKQDIKNS 95 (126)
Q Consensus 81 ~piilv~nK~D~~~~ 95 (126)
+|+++++||+|+...
T Consensus 135 ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 135 VPRIAFVNKMDRMGA 149 (704)
T ss_pred CCEEEEEeCCCcccc
Confidence 899999999998764
No 180
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.22 E-value=3.1e-11 Score=89.58 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=64.4
Q ss_pred CccCceEEEEEEC----------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHH
Q psy6566 9 PTIGSNVEEVIWK----------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM 72 (126)
Q Consensus 9 pTi~~~~~~~~~~----------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~ 72 (126)
.|++.....+.++ +..+.+|||||+..|...+..+++.+|++++|+|+++..++..... |...
T Consensus 68 iTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~ 146 (842)
T 1n0u_A 68 ITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQA 146 (842)
T ss_dssp CCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHH
T ss_pred eeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHH
Confidence 4676555555553 6899999999999999999999999999999999998877766543 4444
Q ss_pred hCCCCCCCCeEEEEEecCCCC
Q psy6566 73 LNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 73 ~~~~~~~~~piilv~nK~D~~ 93 (126)
.. .++|+++++||+|+.
T Consensus 147 ~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 147 LG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp HH----TTCEEEEEEECHHHH
T ss_pred HH----cCCCeEEEEECCCcc
Confidence 32 368999999999986
No 181
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.22 E-value=9.2e-11 Score=76.11 Aligned_cols=84 Identities=11% Similarity=0.185 Sum_probs=53.2
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcch-----------HHHHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHhCCCC
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSL-----------RAAWSTYYTNTEFVILVIDSTDRERI-SLTKEELYKMLNHED 77 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~ 77 (126)
|.......+..++..+.+|||||+..+ ......+++.+|++++|+|+++.... ..+..++.......
T Consensus 58 t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~- 136 (260)
T 2xtp_A 58 TKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED- 136 (260)
T ss_dssp CCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-
T ss_pred eeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-
Confidence 444566677779999999999997654 22233468899999999999863222 22333344433211
Q ss_pred CCCCeEEEEEe-cCCCCCC
Q psy6566 78 LSKAAVLIYAN-KQDIKNS 95 (126)
Q Consensus 78 ~~~~piilv~n-K~D~~~~ 95 (126)
...|.++++| |+|+...
T Consensus 137 -~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 137 -AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp -GGGGEEEEEECGGGGTTC
T ss_pred -hhccEEEEEEcccccCCc
Confidence 1345555555 9999753
No 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.21 E-value=3.9e-11 Score=78.12 Aligned_cols=83 Identities=6% Similarity=-0.040 Sum_probs=54.1
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhc---------cCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCC-C
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYY---------TNTEFVILVIDSTDRERISLT-KEELYKMLNHED-L 78 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~-~ 78 (126)
|.......+..++..+.+|||||++.+....+.++ ..++++++|++++... +... ..++..+.+... .
T Consensus 71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~ 149 (262)
T 3def_A 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKE 149 (262)
T ss_dssp CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGG
T ss_pred ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchh
Confidence 44466667777999999999999987654332222 2789999999887644 3222 233333322211 0
Q ss_pred CCCeEEEEEecCCCC
Q psy6566 79 SKAAVLIYANKQDIK 93 (126)
Q Consensus 79 ~~~piilv~nK~D~~ 93 (126)
...|+++++||+|+.
T Consensus 150 ~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 150 IWCKTLLVLTHAQFS 164 (262)
T ss_dssp GGGGEEEEEECTTCC
T ss_pred hhcCEEEEEeCcccC
Confidence 124999999999985
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.18 E-value=2.9e-10 Score=82.60 Aligned_cols=79 Identities=9% Similarity=0.148 Sum_probs=60.9
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
|+......+..++..+.+|||+|++.|...+..+++.+|++++|+|+++..... ...++..+.. .++|+++++||
T Consensus 61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NK 135 (665)
T 2dy1_A 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTK 135 (665)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEC
T ss_pred eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecC
Confidence 344444455558899999999999999999999999999999999987653332 3344544433 36899999999
Q ss_pred CCCC
Q psy6566 90 QDIK 93 (126)
Q Consensus 90 ~D~~ 93 (126)
+|+.
T Consensus 136 iD~~ 139 (665)
T 2dy1_A 136 LDKG 139 (665)
T ss_dssp GGGC
T ss_pred Cchh
Confidence 9987
No 184
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.14 E-value=3.1e-10 Score=73.32 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=56.4
Q ss_pred CccCceEEEEEECCEEEEEEEcCCC--------cchHHHHHhhc----cCCcEEEEEEECCCcccH-HHHHHHHHHHhCC
Q psy6566 9 PTIGSNVEEVIWKNIHFIMWDLGGQ--------QSLRAAWSTYY----TNTEFVILVIDSTDRERI-SLTKEELYKMLNH 75 (126)
Q Consensus 9 pTi~~~~~~~~~~~~~~~i~Dt~G~--------~~~~~~~~~~~----~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~ 75 (126)
+|.......+..++..+.+|||||. +.+......++ +++|++++|+|+++.... ..+.+++......
T Consensus 56 ~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~ 135 (247)
T 3lxw_A 56 VTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE 135 (247)
T ss_dssp -CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG
T ss_pred ccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh
Confidence 4455666677779999999999996 33333333333 899999999998753221 2223344443322
Q ss_pred CCCCCCeEEEEEecCCCCCC
Q psy6566 76 EDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 76 ~~~~~~piilv~nK~D~~~~ 95 (126)
...+.|++++.||+|+.+.
T Consensus 136 -~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 136 -DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp -GGGGGEEEEEECGGGGTTC
T ss_pred -hhhccEEEEEEchHhcCCC
Confidence 1236899999999999763
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.14 E-value=2.7e-11 Score=82.14 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=63.0
Q ss_pred CCEEEEEEEcCCCcch-------------HHHHHhhccCCcEEEEEEECCCcccHH-HHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 21 KNIHFIMWDLGGQQSL-------------RAAWSTYYTNTEFVILVIDSTDRERIS-LTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~piilv 86 (126)
....+.+|||||...+ ..+...|++.++++++++|..+.+... ....+...+ . ..+.|+++|
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~-~---~~~~~~i~V 209 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PSGDRTFGV 209 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS-C---TTCTTEEEE
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh-c---ccCCCEEEE
Confidence 4568999999998776 667888999999999999876543332 222222222 2 246799999
Q ss_pred EecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 87 ANKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 87 ~nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+||+|+..... ..+... ......+++|+.+|++++
T Consensus 210 ~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 210 LTKIDLMDKGTDAVEILE----GRSFKLKYPWVGVVNRSQ 245 (360)
T ss_dssp EECGGGCCTTCCSHHHHT----TSSSCCSSCCEEECCCCH
T ss_pred EeCCccCCCcccHHHHHc----CccccccCCeEEEEECCh
Confidence 99999875321 112111 122344567888888753
No 186
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.12 E-value=3.2e-10 Score=72.70 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=54.8
Q ss_pred ccCceEEEEEECCEEEEEEEcCCC-----------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQ-----------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED- 77 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~- 77 (126)
|..+....+.+++..+.+|||||. +.+...+..++++++++++|+|+++.... ...++..+.+...
T Consensus 65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~ 142 (239)
T 3lxx_A 65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGE 142 (239)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHH
T ss_pred eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhh
Confidence 444556677779999999999994 34555556667889999999998764331 1222322221100
Q ss_pred CCCCeEEEEEecCCCCCC
Q psy6566 78 LSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 78 ~~~~piilv~nK~D~~~~ 95 (126)
....|+++++||+|+...
T Consensus 143 ~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 143 RARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHGGGEEEEEECGGGC--
T ss_pred hccceEEEEEeCCccCCc
Confidence 024599999999998653
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.12 E-value=2.7e-10 Score=75.74 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=49.2
Q ss_pred CCEEEEEEEcCCCcc-------------hHHHHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 21 KNIHFIMWDLGGQQS-------------LRAAWSTYYTNTEFVILVIDSTDRERI-SLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piilv 86 (126)
.+..+.+|||||... +...+..+++.+|++++|+|.++.... ..... +...+.. .+.|+++|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~-i~~~~~~---~~~~~i~v 204 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQ-LAKEVDP---EGKRTIGV 204 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHH-HHHHHCS---SCSSEEEE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHH-HHHHhCC---CCCcEEEE
Confidence 557899999999754 556677889999999999997443211 11112 2223333 46899999
Q ss_pred EecCCCCCC
Q psy6566 87 ANKQDIKNS 95 (126)
Q Consensus 87 ~nK~D~~~~ 95 (126)
+||+|+...
T Consensus 205 ~NK~Dl~~~ 213 (315)
T 1jwy_B 205 ITKLDLMDK 213 (315)
T ss_dssp EECTTSSCS
T ss_pred EcCcccCCc
Confidence 999998754
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.03 E-value=2.3e-09 Score=76.44 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=64.9
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
||....-++.+++..+.++||||+..|.......++-+|++|+|+|+.+--.. .....|..+.+ .++|.++++||
T Consensus 87 TI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK 161 (548)
T 3vqt_A 87 SVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNK 161 (548)
T ss_dssp -CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEEC
T ss_pred cEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEec
Confidence 55555667778999999999999999999999999999999999999874332 33445666654 36899999999
Q ss_pred CCCCCC
Q psy6566 90 QDIKNS 95 (126)
Q Consensus 90 ~D~~~~ 95 (126)
+|....
T Consensus 162 ~Dr~~a 167 (548)
T 3vqt_A 162 MDREAL 167 (548)
T ss_dssp TTSCCC
T ss_pred ccchhc
Confidence 999774
No 189
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.97 E-value=2.9e-09 Score=69.54 Aligned_cols=79 Identities=6% Similarity=-0.044 Sum_probs=50.2
Q ss_pred EEEEEECCEEEEEEEcCCCcchHH-------HHHhh--ccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCC-CCCCeE
Q psy6566 15 VEEVIWKNIHFIMWDLGGQQSLRA-------AWSTY--YTNTEFVILVIDSTDRERISLT-KEELYKMLNHED-LSKAAV 83 (126)
Q Consensus 15 ~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~--~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~pi 83 (126)
...+..++..+.+|||||++.+.. .+..+ .+.+|++++|+|++.. ++... ..++..+.+... ....|+
T Consensus 79 ~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~i 157 (270)
T 1h65_A 79 MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKA 157 (270)
T ss_dssp EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred EEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCE
Confidence 344555889999999999976542 12222 3479999999998653 23322 234444332211 012699
Q ss_pred EEEEecCCCCC
Q psy6566 84 LIYANKQDIKN 94 (126)
Q Consensus 84 ilv~nK~D~~~ 94 (126)
++++||+|+..
T Consensus 158 ivV~nK~Dl~~ 168 (270)
T 1h65_A 158 IVALTHAQFSP 168 (270)
T ss_dssp EEEEECCSCCC
T ss_pred EEEEECcccCC
Confidence 99999999864
No 190
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.94 E-value=7.8e-10 Score=80.74 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=51.3
Q ss_pred EEEEEEEcCCCcc---hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 23 IHFIMWDLGGQQS---LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 23 ~~~~i~Dt~G~~~---~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
..+.+|||||... .......+++.+|++++|+|++++.+..+... +...+.. .+.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l~~---~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENYIKG---RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHTTT---SCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHHHh---hCCCEEEEEECccccc
Confidence 3599999999655 34566678899999999999988777666544 3333333 3678999999999864
No 191
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.90 E-value=3.6e-09 Score=66.23 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=58.8
Q ss_pred ccCCccCce--EEEEEECCEEEEEEEcCCCcc----------hHHHHHhhc---cCCcEEEEEEECCCcccHHHHHHHHH
Q psy6566 6 HTSPTIGSN--VEEVIWKNIHFIMWDLGGQQS----------LRAAWSTYY---TNTEFVILVIDSTDRERISLTKEELY 70 (126)
Q Consensus 6 ~~~pTi~~~--~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~---~~~~~~l~v~d~~~~~~~~~~~~~~~ 70 (126)
.+.||.|.. ...+.+++ .+.+|||+|... ++.....++ +.++++++++|++...+.... . +.
T Consensus 54 ~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-~~ 130 (210)
T 1pui_A 54 RTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-Q-MI 130 (210)
T ss_dssp ---------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HH
T ss_pred cccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-H-HH
Confidence 346777733 23344434 688999999842 333333444 578999999999876554321 1 11
Q ss_pred HHhCCCCCCCCeEEEEEecCCCCCCCCHHH-HHhhcCcCcccCCceEEEEeeeeeC
Q psy6566 71 KMLNHEDLSKAAVLIYANKQDIKNSMSPVE-ISNLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 71 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
..+.. .+.|+++++||+|+........ +.............+.++++||+++
T Consensus 131 ~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 131 EWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK 183 (210)
T ss_dssp HHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred HHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCC
Confidence 22222 4689999999999765211001 1111000000123467899999876
No 192
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.88 E-value=1.7e-09 Score=77.15 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=53.0
Q ss_pred EEEEEEcCCCcc-----------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 24 HFIMWDLGGQQS-----------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 24 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
.+.+|||||... +...+..+++.+|++++|+|+++.........++..+ .. .+.|+++|+||+|+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-RG---HEDKIRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-TT---CGGGEEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-Hh---cCCCEEEEEECCCc
Confidence 589999999865 5667777889999999999998765555555555544 32 35799999999998
Q ss_pred CCC
Q psy6566 93 KNS 95 (126)
Q Consensus 93 ~~~ 95 (126)
...
T Consensus 231 ~~~ 233 (550)
T 2qpt_A 231 VET 233 (550)
T ss_dssp SCH
T ss_pred cCH
Confidence 753
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.87 E-value=2.9e-09 Score=72.10 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=56.7
Q ss_pred CEEEEEEEcCCCc-------------chHHHHHhhccCCcEEEE-EEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 22 NIHFIMWDLGGQQ-------------SLRAAWSTYYTNTEFVIL-VIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 22 ~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~l~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
...+.+|||||.. .+..+...|++.++.+++ +.|.+..-.-.+...++..+ .. .+.|+++|+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~-~~---~~~~~i~V~ 204 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV-DP---QGQRTIGVI 204 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH-CT---TCTTEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh-Cc---CCCceEEEe
Confidence 5789999999952 455677778876665555 55655422212222233333 22 478999999
Q ss_pred ecCCCCCCCC-HHHHHhhcCcCcccCCc-eEEEEeeeeeC
Q psy6566 88 NKQDIKNSMS-PVEISNLLDLTSIKKQQ-WHIQSCCALTG 125 (126)
Q Consensus 88 nK~D~~~~~~-~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 125 (126)
||+|+.+... ...+.. ........+ ..++.+||++|
T Consensus 205 NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp ECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHH
T ss_pred ccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccc
Confidence 9999875322 122221 111111123 46889999875
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.83 E-value=1.4e-08 Score=70.11 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=68.9
Q ss_pred ccCceEEEEEECC-EEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-CCCCC
Q psy6566 10 TIGSNVEEVIWKN-IHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-EDLSK 80 (126)
Q Consensus 10 Ti~~~~~~~~~~~-~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (126)
|+..+...+.+.+ ..+.+||++|.... ........+.++.+++++|++ ...+.++..+..++... ..+..
T Consensus 191 Tl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~ 269 (416)
T 1udx_A 191 TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLR 269 (416)
T ss_dssp SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHH
T ss_pred eecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhc
Confidence 3444444555654 88999999997431 112223356899999999998 55666666655554432 11235
Q ss_pred CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|.++++||+|+........+... .+..+.+++.+||++++
T Consensus 270 ~P~ILVlNKlDl~~~~~~~~l~~~-----l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 270 RPSLVALNKVDLLEEEAVKALADA-----LAREGLAVLPVSALTGA 310 (416)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH-----HHTTTSCEEECCTTTCT
T ss_pred CCEEEEEECCChhhHHHHHHHHHH-----HHhcCCeEEEEECCCcc
Confidence 789999999998763111122221 12335678999999864
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.82 E-value=7.6e-10 Score=75.38 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC-CHHHHHhhcCcCc
Q psy6566 31 GGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM-SPVEISNLLDLTS 109 (126)
Q Consensus 31 ~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~v~~~~~~~~ 109 (126)
..++.|+..+..+.+.++++++|+|++++. ..|...+.+. ..+.|+++|+||+|+.... ..+.+.+... ..
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~ 125 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMR-YS 125 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHH-HH
Confidence 357889999999999999999999998753 1222222111 1478999999999996532 2222222211 01
Q ss_pred ccCCce---EEEEeeeeeCC
Q psy6566 110 IKKQQW---HIQSCCALTGE 126 (126)
Q Consensus 110 ~~~~~~---~~~~~Sa~~~~ 126 (126)
.+..++ .++.+||++|+
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~ 145 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQ 145 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCT
T ss_pred HHHcCCCcccEEEEeCCCCc
Confidence 112233 78999999874
No 196
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=1.2e-09 Score=75.01 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=23.7
Q ss_pred EEEEEEEcCCCcch----HHHHH---hhccCCcEEEEEEECCCc
Q psy6566 23 IHFIMWDLGGQQSL----RAAWS---TYYTNTEFVILVIDSTDR 59 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~----~~~~~---~~~~~~~~~l~v~d~~~~ 59 (126)
..+.+|||||+... +.+.. .+++.+|++++|+|+++.
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 68999999998542 22333 347899999999999875
No 197
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.74 E-value=1.6e-09 Score=73.79 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=55.4
Q ss_pred cCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC-CHHHHHhhcCcC
Q psy6566 30 LGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM-SPVEISNLLDLT 108 (126)
Q Consensus 30 t~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~v~~~~~~~ 108 (126)
...++.|+....++++.++++++|+|+.++++ .....+...+ .+.|+++|+||+|+.... ..+.+.+... .
T Consensus 55 ~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~-~ 126 (369)
T 3ec1_A 55 PLDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMR-R 126 (369)
T ss_dssp ----CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHH-H
T ss_pred cCCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHH-H
Confidence 34589999999999999999999999998753 1111122222 468999999999996532 2222222211 1
Q ss_pred cccCCce---EEEEeeeeeCC
Q psy6566 109 SIKKQQW---HIQSCCALTGE 126 (126)
Q Consensus 109 ~~~~~~~---~~~~~Sa~~~~ 126 (126)
..+..++ .++.+||++|+
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~ 147 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGI 147 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTB
T ss_pred HHHHcCCCcccEEEEECCCCC
Confidence 1122233 68999999873
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.74 E-value=6.1e-10 Score=75.46 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=56.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
.+..+.+|||+|.... .....+.+|.+++|+|....+....+ . ......|+++++||+|+.+......
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l--------~-~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGI--------K-KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTC--------C-TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHH--------H-HhHhhcCCEEEEECCCCcChhHHHH
Confidence 5688999999996442 22345889999999997654433211 1 1123569999999999865311111
Q ss_pred HHhhcCcC----ccc--CCceEEEEeeeeeCC
Q psy6566 101 ISNLLDLT----SIK--KQQWHIQSCCALTGE 126 (126)
Q Consensus 101 v~~~~~~~----~~~--~~~~~~~~~Sa~~~~ 126 (126)
....+... ... ..+.+++.+||++|+
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~ 269 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGR 269 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCC
Confidence 11111100 000 123579999999874
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.72 E-value=1.6e-09 Score=70.17 Aligned_cols=68 Identities=13% Similarity=0.012 Sum_probs=42.6
Q ss_pred EEEEEEEcCCCcchHHHHH------hhccCCcEEEEEEECCCcccHHHHHHHH---HHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWS------TYYTNTEFVILVIDSTDRERISLTKEEL---YKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
..+.+|||||+........ ..+.. +.+++++|........+....+ ...... .+.|+++++||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEeccccc
Confidence 4799999999977644321 24556 8899999875433332222111 111111 367999999999986
Q ss_pred C
Q psy6566 94 N 94 (126)
Q Consensus 94 ~ 94 (126)
.
T Consensus 185 ~ 185 (262)
T 1yrb_A 185 S 185 (262)
T ss_dssp C
T ss_pred c
Confidence 5
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.67 E-value=2.3e-07 Score=68.00 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=56.2
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 95 (126)
+..++++||||+-.|.......++-+|++|+|+|+.+--.. .....|+++.+. ++|.++++||+|....
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEccccccCc
Confidence 57899999999999999999999999999999999864322 234456666543 6899999999998764
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.66 E-value=1.7e-08 Score=73.13 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=62.6
Q ss_pred ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
||....-++.+++..+.+.||||+..|.......++-+|++|+|+|+.+--.. .....|..+.+. ++|.+++.||
T Consensus 54 TI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~~----~lp~i~~INK 128 (638)
T 3j25_A 54 TIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQA-QTRILFHALRKM----GIPTIFFINK 128 (638)
T ss_dssp CSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHHH----TCSCEECCEE
T ss_pred cEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHHc----CCCeEEEEec
Confidence 44444445566889999999999999999999999999999999998864222 234445555443 6888999999
Q ss_pred CCCCCCC
Q psy6566 90 QDIKNSM 96 (126)
Q Consensus 90 ~D~~~~~ 96 (126)
+|.....
T Consensus 129 mDr~~a~ 135 (638)
T 3j25_A 129 IDQNGID 135 (638)
T ss_dssp CCSSSCC
T ss_pred cccccCC
Confidence 9987643
No 202
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.62 E-value=2.2e-07 Score=68.39 Aligned_cols=101 Identities=9% Similarity=0.095 Sum_probs=60.3
Q ss_pred CCEEEEEEEcCCCcc-------------hHHHHHhhc-cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 21 KNIHFIMWDLGGQQS-------------LRAAWSTYY-TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~-------------~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
....+.++||||... ...+...|+ +.+|.+++|+|++......+.......+ .. .+.|+++|
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L-~~---~g~pvIlV 223 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-DP---QGQRTIGV 223 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH-CT---TCSSEEEE
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH-Hh---cCCCEEEE
Confidence 456799999999533 333444555 5789999999988643333332233333 32 46899999
Q ss_pred EecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 87 ANKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 87 ~nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
+||+|+..... ...+... ..........+++.+||++|.
T Consensus 224 lNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 224 ITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp EECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESS
T ss_pred EeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccc
Confidence 99999875322 1222221 001111123468889999874
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.61 E-value=2.6e-07 Score=62.78 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=37.0
Q ss_pred CccCceEEEEEECC-----------------EEEEEEEcCCCcchHH-------HHHhhccCCcEEEEEEECCC
Q psy6566 9 PTIGSNVEEVIWKN-----------------IHFIMWDLGGQQSLRA-------AWSTYYTNTEFVILVIDSTD 58 (126)
Q Consensus 9 pTi~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~~l~v~d~~~ 58 (126)
+|++.+...+.+.+ ..+.+|||||+..+.. ....+++.+|++++|+|+++
T Consensus 35 tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 35 CTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 46666555566643 6899999999987642 22345789999999999986
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.56 E-value=4e-08 Score=64.66 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=53.2
Q ss_pred EEEcCCCc-chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhc
Q psy6566 27 MWDLGGQQ-SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLL 105 (126)
Q Consensus 27 i~Dt~G~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~ 105 (126)
|-..||+. .........++.+|+++.|+|+.++.+.... .+.+++ .+.|.++++||+|+......+...+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44578875 4455566679999999999999988665421 133333 468999999999997631112222222
Q ss_pred CcCcccCCceEEEEeeeeeC
Q psy6566 106 DLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 106 ~~~~~~~~~~~~~~~Sa~~~ 125 (126)
+..+++++.+||++|
T Consensus 76 -----~~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNG 90 (282)
T ss_dssp -----HTTTCCEEECCTTTC
T ss_pred -----HhcCCcEEEEECCCc
Confidence 123457889999876
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.53 E-value=1.7e-08 Score=68.10 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=53.3
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~ 100 (126)
++..+.+|||+|....... ..+.+|++++|+|....+.+..... .. .+.|.++++||+|+.+......
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 5778999999997655433 4689999999999865432111100 00 1468899999999875311111
Q ss_pred ----HHhhcCcCc--ccCCceEEEEeeeeeCC
Q psy6566 101 ----ISNLLDLTS--IKKQQWHIQSCCALTGE 126 (126)
Q Consensus 101 ----v~~~~~~~~--~~~~~~~~~~~Sa~~~~ 126 (126)
+...+.... ......+++.+||++|+
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~ 246 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKR 246 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCC
Confidence 111110000 01113478999999874
No 206
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.50 E-value=1.7e-08 Score=66.94 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=50.4
Q ss_pred CccCceEEEEEE----CCEEEEEEEcCCC-------cchHHHHH-------hhccC-------------CcEEEEEEECC
Q psy6566 9 PTIGSNVEEVIW----KNIHFIMWDLGGQ-------QSLRAAWS-------TYYTN-------------TEFVILVIDST 57 (126)
Q Consensus 9 pTi~~~~~~~~~----~~~~~~i~Dt~G~-------~~~~~~~~-------~~~~~-------------~~~~l~v~d~~ 57 (126)
+|++.....+.+ ....+.+|||+|. +.+..+.. .+++. +++++|+.+.+
T Consensus 58 ~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt 137 (301)
T 2qnr_A 58 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 137 (301)
T ss_dssp -------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS
T ss_pred CcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc
Confidence 455543333333 2468999999998 55555443 44332 34466655543
Q ss_pred CcccHHHHH-HHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH--hhcCcCcccCCceEEEEeeeeeC
Q psy6566 58 DRERISLTK-EELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS--NLLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
. .+++... ..+..+ . ...|+++|+||.|+... .++. ......++...+++++++||++|
T Consensus 138 ~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~~---~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 138 G-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLTL---KERERLKKRILDEIEEHNIKIYHLPDAES 199 (301)
T ss_dssp S-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGGSCH---HHHHHHHHHHHHHHHHTTCCCCCCC----
T ss_pred c-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCCH---HHHHHHHHHHHHHHHHcCCeEEecCCccc
Confidence 2 1233322 223332 1 35799999999998652 2221 11222333445678999999876
No 207
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.40 E-value=9.4e-08 Score=66.08 Aligned_cols=94 Identities=11% Similarity=0.109 Sum_probs=43.3
Q ss_pred EEEEEEEcCCCcchH-------HH------------------HHhhccCCc--EEEEEEECCCcccHHHHH-HHHHHHhC
Q psy6566 23 IHFIMWDLGGQQSLR-------AA------------------WSTYYTNTE--FVILVIDSTDRERISLTK-EELYKMLN 74 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~-------~~------------------~~~~~~~~~--~~l~v~d~~~~~~~~~~~-~~~~~~~~ 74 (126)
..+.+|||+|..... .+ .+.+++.++ +++|+.+.+. .++.... .++..+ .
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~ 165 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H 165 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h
Confidence 478999999986541 11 112234444 4555444331 2333333 344444 2
Q ss_pred CCCCCCCeEEEEEecCCCCCCCCHHHHHh--hcCcCcccCCceEEEEeeeeeC
Q psy6566 75 HEDLSKAAVLIYANKQDIKNSMSPVEISN--LLDLTSIKKQQWHIQSCCALTG 125 (126)
Q Consensus 75 ~~~~~~~piilv~nK~D~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~ 125 (126)
.+.|+++|+||+|+... .++.. ......+...+++++++||+++
T Consensus 166 ----~~v~iIlVinK~Dll~~---~ev~~~k~~i~~~~~~~~i~~~~~sa~~~ 211 (418)
T 2qag_C 166 ----EKVNIIPLIAKADTLTP---EECQQFKKQIMKEIQEHKIKIYEFPETDD 211 (418)
T ss_dssp ----TTSEEEEEEESTTSSCH---HHHHHHHHHHHHHHHHHTCCCCCCC----
T ss_pred ----ccCcEEEEEEcccCccH---HHHHHHHHHHHHHHHHcCCeEEeCCCCCC
Confidence 36899999999998652 23222 1111222233556777787764
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.30 E-value=2.8e-07 Score=62.38 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=50.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCH--
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSP-- 98 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-- 98 (126)
.+..+.++||+|.... .....+.+|.+++|+|+.......... ..+ ...|.++++||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCCchhHHH
Confidence 5678899999996322 233467899999999987643222111 111 24578999999998642110
Q ss_pred --HHHHhhcCcCcc--cCCceEEEEeeeeeCC
Q psy6566 99 --VEISNLLDLTSI--KKQQWHIQSCCALTGE 126 (126)
Q Consensus 99 --~~v~~~~~~~~~--~~~~~~~~~~Sa~~~~ 126 (126)
..+...+..... .....+++.+||++|+
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~ 264 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGE 264 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCT
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCC
Confidence 112211111100 0113478899999874
No 209
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.23 E-value=1e-07 Score=60.11 Aligned_cols=90 Identities=12% Similarity=0.188 Sum_probs=52.4
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC--CCHH
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS--MSPV 99 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~ 99 (126)
+..+.+|||+|+-... ..+...++.+++|+|+++.... ...+. .. .+.|+++++||+|+.+. ....
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHH
Confidence 4578999999951111 1122367889999998764321 11111 11 24688999999998542 2333
Q ss_pred HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 100 EISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
++...+... ....+++++||++|+
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~ 199 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGK 199 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTB
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCC
Confidence 333322110 124589999999873
No 210
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.08 E-value=4.5e-06 Score=56.85 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=29.1
Q ss_pred CEEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCC
Q psy6566 22 NIHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTD 58 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~ 58 (126)
+..+.+|||||+... ......+++.+|++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 467999999998664 2234446899999999999975
No 211
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.9e-05 Score=53.98 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCccCceEEEEEECCEEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHhCCCCCC
Q psy6566 8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTDRERI-SLTKEELYKMLNHEDLS 79 (126)
Q Consensus 8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (126)
-+|+......+.+.+..+++.||||...- .......++.||++++|+|..++..- +.+...+... .....
T Consensus 104 ftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~ 181 (376)
T 4a9a_A 104 FTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLN 181 (376)
T ss_dssp SSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEET
T ss_pred CceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhc
Confidence 46777788888899999999999995321 12233457889999999999876322 2222222222 11224
Q ss_pred CCeEEEEEecCCCC
Q psy6566 80 KAAVLIYANKQDIK 93 (126)
Q Consensus 80 ~~piilv~nK~D~~ 93 (126)
..|..++.||+|..
T Consensus 182 ~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 182 KTPPDILIKKKEKG 195 (376)
T ss_dssp CCCCCEEEEECSSS
T ss_pred cCChhhhhhHhhhh
Confidence 56788899999964
No 212
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.94 E-value=4.7e-06 Score=55.45 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=46.7
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC----HHHHHhhcCcCcccCCce
Q psy6566 40 WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS----PVEISNLLDLTSIKKQQW 115 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~v~~~~~~~~~~~~~~ 115 (126)
.+..+.++|.+++|+|+.++..-... +..++......++|.+++.||+|+..... ...+...+ ...++
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~---i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~ 151 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTAL---LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGY 151 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHH---HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCCC
Confidence 34468899999999999876543332 22332111115789999999999976421 12222222 11234
Q ss_pred EEEEeeeeeC
Q psy6566 116 HIQSCCALTG 125 (126)
Q Consensus 116 ~~~~~Sa~~~ 125 (126)
+++.+||++|
T Consensus 152 ~v~~~sa~~~ 161 (307)
T 1t9h_A 152 DVYLTSSKDQ 161 (307)
T ss_dssp CEEECCHHHH
T ss_pred eEEEEecCCC
Confidence 6788887654
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.67 E-value=5.1e-06 Score=54.08 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=46.9
Q ss_pred cCCCcch-HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcC
Q psy6566 30 LGGQQSL-RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLT 108 (126)
Q Consensus 30 t~G~~~~-~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~ 108 (126)
.||+... .......++.+|.++.|+|+.++.+..... +. + . ++|.+++.||+|+......+.+...+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 3565432 234455689999999999998876543210 11 1 1 789999999999976311122222221
Q ss_pred cccCCceEEEEeeeeeCC
Q psy6566 109 SIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 109 ~~~~~~~~~~~~Sa~~~~ 126 (126)
..++++ .+||++|.
T Consensus 73 ---~~g~~v-~iSa~~~~ 86 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEP 86 (262)
T ss_dssp ---HTTCCE-EECCTTSC
T ss_pred ---HcCCeE-EEECCCCc
Confidence 123456 88888763
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.62 E-value=5.8e-05 Score=51.87 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=31.2
Q ss_pred CCccCceEEEEEEC-----------------CEEEEEEEcCCCcchHH-------HHHhhccCCcEEEEEEECCCc
Q psy6566 8 SPTIGSNVEEVIWK-----------------NIHFIMWDLGGQQSLRA-------AWSTYYTNTEFVILVIDSTDR 59 (126)
Q Consensus 8 ~pTi~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~~l~v~d~~~~ 59 (126)
.+|++.+...+.+. ...+.+|||||+..... .+..+++.+|++++|+|+++.
T Consensus 54 ~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 54 FCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ----CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 35666666666653 23599999999877554 466778999999999998754
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.55 E-value=0.00011 Score=49.46 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=38.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..+.++||+|...-.. ...+.+|.+++++|....+..+.+ .. .....+.+++.||+|+..
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i--------~~-~i~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI--------KK-GIFELADMIAVNKADDGD 207 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C--------CT-THHHHCSEEEEECCSTTC
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH--------HH-HHhccccEEEEEchhccC
Confidence 578899999999754332 235789999999997543221111 00 001345577789999753
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.29 E-value=0.00022 Score=48.39 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=42.2
Q ss_pred hccCCcEEEEEEECCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEee
Q psy6566 43 YYTNTEFVILVIDSTDRER-ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 121 (126)
...++|.+++|... .|.. ...+..++... .. .++|.++|+||+|+........+..... .....+++++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a-~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~--~y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGC-ET---LQVEPLIVLNKIDLLDDEGMDFVNEQMD--IYRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHH-HH---HTCEEEEEEECGGGCCHHHHHHHHHHHH--HHHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCchhHHHHHHHHH--HHHhCCCcEEEEe
Confidence 36789999987654 4543 33222222211 11 4678899999999976321011111111 1123456788999
Q ss_pred eeeC
Q psy6566 122 ALTG 125 (126)
Q Consensus 122 a~~~ 125 (126)
|++|
T Consensus 200 a~~~ 203 (358)
T 2rcn_A 200 SHTQ 203 (358)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 8875
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.73 E-value=0.0056 Score=43.44 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=41.0
Q ss_pred CCEEEEEEEcCCCcchH-HHHH---hh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLR-AAWS---TY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~-~~~~---~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~ 93 (126)
++..+.|+||||..... ..+. .. ...++.+++|+|+......... ...+.+ ..|+ .++.||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCCccc
Confidence 56789999999976421 1111 11 2278999999998764332222 222211 2564 8899999986
Q ss_pred CC
Q psy6566 94 NS 95 (126)
Q Consensus 94 ~~ 95 (126)
..
T Consensus 254 ~~ 255 (504)
T 2j37_W 254 AK 255 (504)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 218
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.06 E-value=0.00073 Score=42.39 Aligned_cols=43 Identities=21% Similarity=0.092 Sum_probs=26.3
Q ss_pred CeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566 81 AAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126 (126)
Q Consensus 81 ~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 126 (126)
.|.++++||+|+... ....++...... .....+++++||++|+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~ 209 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKR---INPDAEVVLLSLKTME 209 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECCTTTCT
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHH---hCCCCeEEEEEecCCC
Confidence 577999999998542 223333222211 0224589999999874
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.10 E-value=0.056 Score=37.19 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=36.6
Q ss_pred ccCceEEEEEECC-----------------EEEEEEEcCCC-------cchHHHHHhhccCCcEEEEEEECCC
Q psy6566 10 TIGSNVEEVIWKN-----------------IHFIMWDLGGQ-------QSLRAAWSTYYTNTEFVILVIDSTD 58 (126)
Q Consensus 10 Ti~~~~~~~~~~~-----------------~~~~i~Dt~G~-------~~~~~~~~~~~~~~~~~l~v~d~~~ 58 (126)
|+..+...+.+.+ ..+.+||++|. +.+.......++.+|++++|+|+.+
T Consensus 55 Ti~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 55 TIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred eecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6667777777754 57899999994 3344455667889999999999864
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.03 E-value=0.088 Score=32.18 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=45.1
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-LSKAAVLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~ 93 (126)
+...+.++|+++... ......+..+|.+++++..+.. + ..+...+..+.+... .++.++.++.|+.|..
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 346789999998753 2334456679999999986543 4 555554444433211 2456889999999854
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.75 E-value=0.21 Score=34.83 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=40.7
Q ss_pred CCEEEEEEEcCCCcchHHH-HH---h--hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC-e-EEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA-WS---T--YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA-A-VLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~-~~---~--~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D~ 92 (126)
++..+.++||+|....... .. . .+..++.+++|+|+..... .......+ . ... | ..++.||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 5678999999997654221 11 1 1236899999999865432 22222222 1 124 5 7899999997
Q ss_pred CC
Q psy6566 93 KN 94 (126)
Q Consensus 93 ~~ 94 (126)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 222
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.60 E-value=0.46 Score=29.76 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=52.8
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI 101 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v 101 (126)
...+.++|+++.... .....+..+|.+++++... ..+...+...+..+.+. ..+...+-++.|+.+.......+++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~~~~~~~~~~~ 193 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEF-EKPISRIEIILNRADTNSRITSDEI 193 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTC-SSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-CCCccceEEEEecCCCCCCCCHHHH
Confidence 356889999876433 3344577899999998754 55666676655555333 2234567899999987655455555
Q ss_pred HhhcC
Q psy6566 102 SNLLD 106 (126)
Q Consensus 102 ~~~~~ 106 (126)
.+.++
T Consensus 194 ~~~~~ 198 (245)
T 3ea0_A 194 EKVIG 198 (245)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 55544
No 223
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.08 E-value=0.29 Score=32.09 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=44.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~ 92 (126)
+...+.++|+++...... ....+..+|.+++++.. +..+...+...+..+.+.....+.+++ +|.|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 356789999987543221 12346789999999875 345666666555555432222456655 89999984
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.93 E-value=0.14 Score=35.79 Aligned_cols=67 Identities=21% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCEEEEEEEcCCCcchHH-----HHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA-----AWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
++..+.++||+|...... +.. .....++.+++|+|++......+. ...+.+. -.+..++.||.|...
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSSCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCCcc
Confidence 357899999999643211 111 113358999999998754332222 2222222 124568999999764
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.77 E-value=0.18 Score=33.29 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=40.2
Q ss_pred CCEEEEEEEcCCCcc--hHH-HHH-----hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQS--LRA-AWS-----TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~--~~~-~~~-----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 91 (126)
++..+.+.||||... ... +.. .....++.+++|+|..... +.......+.. ..| ..++.||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 456799999999876 322 111 1244689999999976432 22222222221 244 678899999
Q ss_pred CCC
Q psy6566 92 IKN 94 (126)
Q Consensus 92 ~~~ 94 (126)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 754
No 226
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.84 E-value=0.77 Score=29.34 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=41.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~ 92 (126)
+...+.+.|+|+..............+|.++++.... ..+...+...+..+ +. .+.+++ ++.|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMA-EE---TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHH-HT---TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHH-Hh---CCCCEEEEEECCCcc
Confidence 3567899999986543222222223689999998755 44566665555444 33 245666 89999873
No 227
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.61 E-value=0.82 Score=29.19 Aligned_cols=66 Identities=6% Similarity=0.091 Sum_probs=43.9
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
+...+.++|+++.... .....+..+|.+++++... ..+...+......+.+.. .+.++.++.|+.+
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence 4467899999986533 3444566799999999864 455665655444443331 3567789999984
No 228
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.69 E-value=0.71 Score=28.53 Aligned_cols=68 Identities=4% Similarity=-0.017 Sum_probs=44.8
Q ss_pred CCEEEEEEEcCCC-cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQ-QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+...+.+.|+++. .... ....+..+|.+++++..+ ..+...+...+..+.+. .+.++.++.|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~~--~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDED--LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSSH--HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcHH--HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 3456889999987 4432 333567899999998754 45566565555444332 1456889999998654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.63 E-value=0.86 Score=31.82 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCEEEEEEEcCCCcc--h--H--HHHHh--hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQS--L--R--AAWST--YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~--~--~--~~~~~--~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 92 (126)
++..+.+.||||... . . ..... ..-..+.+++|+|+.......+....+.+.+ .+..++.||.|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-------~~~gVIlTKlD~ 250 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-------PIGSVIITKMDG 250 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-------SSEEEEEECGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-------CCcEEEEecccc
Confidence 367788999999644 1 1 11111 1225789999999876433333333333221 346789999997
Q ss_pred CC
Q psy6566 93 KN 94 (126)
Q Consensus 93 ~~ 94 (126)
..
T Consensus 251 ~a 252 (433)
T 3kl4_A 251 TA 252 (433)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 230
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.68 E-value=2.4 Score=26.26 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=48.9
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPV 99 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~ 99 (126)
+...+.+.|+++... ......+..+|.+++++... ..+...+...+..+.+. ....+-++.|+.+.... ....
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~ 183 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHH
Confidence 345688999988644 33444678899999998754 45566665555444332 22456789999986432 2344
Q ss_pred HHHhhc
Q psy6566 100 EISNLL 105 (126)
Q Consensus 100 ~v~~~~ 105 (126)
++.+.+
T Consensus 184 ~~~~~~ 189 (237)
T 1g3q_A 184 AAEDVM 189 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 454443
No 231
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.39 E-value=1.1 Score=28.36 Aligned_cols=68 Identities=7% Similarity=0.018 Sum_probs=44.7
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-----CCCCCeEEEEEecCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-----DLSKAAVLIYANKQDI 92 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~piilv~nK~D~ 92 (126)
...+.++|+++.... .....+..+|.++++++. +..+...+...+..+.... .....++-++.|+.+.
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 677999999986443 444557789999999975 4556666665444443221 0022577899999874
No 232
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.93 E-value=1.6 Score=27.75 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=42.3
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH---HHHHHhCCCCCCCCeEE-EEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE---ELYKMLNHEDLSKAAVL-IYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~pii-lv~nK~D~~~ 94 (126)
+...+.+.|+++..... ....+..+|.+++++.... .+...+.. .+..+.+. ..++.+++ ++.|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECCCc
Confidence 45678999999865432 2334566999999998653 34444433 23322111 11456764 8999998643
No 233
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.80 E-value=3.3 Score=27.04 Aligned_cols=67 Identities=6% Similarity=-0.011 Sum_probs=41.9
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
..+.|+|+|....... .....+.+|++++|+.... .+...+...+..+.+. ....+-+|.|+.|...
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQN---GIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence 4588999997643321 2334677999999998653 4555555544444332 2234567889998654
No 234
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.68 E-value=0.76 Score=28.75 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=41.8
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
+...+.++|+++.... .....+..+|.+++++..+ ..++..+..... .+... .-..+.++.|+.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~-~~~~~--~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEK-LAGDL--GIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHH-HHHHH--TCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHH-HHHHc--CCccEEEEEeCCC
Confidence 4567899999875433 2333568899999999754 455555554333 32322 2245788999987
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.42 E-value=1.8 Score=30.18 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=38.7
Q ss_pred CCEEEEEEEcCCCcchH-HHHH-----hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLR-AAWS-----TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~-~~~~-----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 93 (126)
++..+.+.||||..... .... .....++.+++|+|+......... ...+.. ..+ .-++.||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~---~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT---AKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH---HHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH---HHHHhc-----cCCCeEEEEecCCCC
Confidence 46789999999975431 1111 124478999999998754322222 222211 233 34689999975
Q ss_pred C
Q psy6566 94 N 94 (126)
Q Consensus 94 ~ 94 (126)
.
T Consensus 254 ~ 254 (433)
T 2xxa_A 254 A 254 (433)
T ss_dssp S
T ss_pred c
Confidence 4
No 236
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.76 E-value=1.4 Score=28.01 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=42.8
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+...+.++|+++... ......+..+|.+++++... ..+...+...+..+.+. ...++-++.|+.+...
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTLG 176 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCccc
Confidence 346789999997644 23334566799999998753 44555555544433222 2245668999998543
No 237
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.69 E-value=2.2 Score=27.58 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=40.6
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDIKN 94 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~ 94 (126)
...+.|+|+|+...... .......+|++++|+... ..+...+......+ +. .+.+++ +|.|+.|...
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~-~~~~~~~~~~~~~l-~~---~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSE-NNNKDEVKKGKELI-EA---TGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETT-SCCHHHHHHHHHHH-HT---TTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCC-CCcHHHHHHHHHHH-Hh---CCCCEEEEEEeCCcCCC
Confidence 34688999997543211 122345689999999864 34556665544444 33 345655 8999998643
No 238
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=87.41 E-value=0.049 Score=37.07 Aligned_cols=65 Identities=5% Similarity=0.032 Sum_probs=38.5
Q ss_pred EEEEEcCCCcchHH--------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 25 FIMWDLGGQQSLRA--------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~--------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
+.++||||...... ....++ +..+.++|+++......+..+.. ...+.. .+.|++++.||.|...
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~~---~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIKG---GRRSFVCYMANELTVH 288 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEES---SSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--EEEccC---CCceEEEEecCCcccc
Confidence 79999999643221 112222 67899999998743211111110 111222 4689999999999754
No 239
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.65 E-value=1.3 Score=32.28 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=38.0
Q ss_pred CCEEEEEEEcCCCc-------------chHHHHHhhccCCcEE-EEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566 21 KNIHFIMWDLGGQQ-------------SLRAAWSTYYTNTEFV-ILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~-l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 86 (126)
..-.+.+.|.||.. ....+...++.....+ +.+...+..-.-..+......+ .. .+.+.++|
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v-~~---~g~rtI~V 220 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV-DP---EGDRTIGI 220 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH-CS---SCCSEEEE
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH-hh---cCCceEEE
Confidence 34568999998632 2233455656555444 4444432211111223333333 22 46789999
Q ss_pred EecCCCCCC
Q psy6566 87 ANKQDIKNS 95 (126)
Q Consensus 87 ~nK~D~~~~ 95 (126)
.||.|+...
T Consensus 221 lTK~Dlv~~ 229 (608)
T 3szr_A 221 LTKPDLVDK 229 (608)
T ss_dssp EECGGGSSS
T ss_pred ecchhhcCc
Confidence 999998754
No 240
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=80.46 E-value=9.3 Score=24.63 Aligned_cols=71 Identities=8% Similarity=0.096 Sum_probs=41.6
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--CCCCCCe-EEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDLSKAA-VLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p-iilv~nK~D~~~ 94 (126)
+...+.+.|+|+........ .+..+|.+++++... ..+...+...+..+.+. ....+.+ +-++.|+.|...
T Consensus 153 ~~yD~IiiD~pp~~~~~~~~--~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVYTNN--AIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GGCSEEEEEECSSCSHHHHH--HHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred cCCCEEEEECCCCccHHHHH--HHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 34578999999875543222 344599999998754 34455544433332210 0013566 458999998644
No 241
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=80.25 E-value=4.2 Score=25.79 Aligned_cols=71 Identities=7% Similarity=0.073 Sum_probs=40.2
Q ss_pred CCEEEEEEEcCCCcchHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAA-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDI 92 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~ 92 (126)
+...+.++|++|....... .......+|.+++++... ..+...+...+..+.+.....+.+ +-++.|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3467999999986432211 112235799999998754 445555544333332211113455 4688999864
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=78.39 E-value=4.5 Score=28.16 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred CCEEEEEEEcCCCcchH-H-HHH----hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLR-A-AWS----TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~-~-~~~----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
++..+.+.||||..... . +.+ ...-.++.+++|+|.... .+.......+... .+ ..-++.||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~---l~-i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK---VG-VTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH---TC-CCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhc---CC-ceEEEEeCcCCcc
Confidence 45678999999975431 1 111 112368999999997643 2222222222111 11 2456889998643
No 243
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=76.46 E-value=0.86 Score=31.77 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.8
Q ss_pred CCCeEEEEEecCCCCC
Q psy6566 79 SKAAVLIYANKQDIKN 94 (126)
Q Consensus 79 ~~~piilv~nK~D~~~ 94 (126)
.+.|++++.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 4689999999999765
No 244
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=74.80 E-value=5.8 Score=25.55 Aligned_cols=70 Identities=7% Similarity=0.100 Sum_probs=38.8
Q ss_pred CEEEEEEEcCCCcchHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCC
Q psy6566 22 NIHFIMWDLGGQQSLRAA-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDI 92 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~ 92 (126)
...+.++|++|....... .......+|.+++++... ..+...+...+..+.+.....+.+ .-++.|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 567999999985432211 122235799999998753 445554443333222110013455 4578899863
No 245
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=74.51 E-value=14 Score=24.08 Aligned_cols=66 Identities=6% Similarity=-0.093 Sum_probs=38.4
Q ss_pred EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCC
Q psy6566 23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKN 94 (126)
Q Consensus 23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~ 94 (126)
..+.|+|+|+...... .......+|.+++|+.... .+...+...+..+.+. +.+ +-+|.|+.|...
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQA----GVNIKGAILNGVIKRA 280 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHT----TCCCCCEEEEECCCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhC----CCCeEEEEEeCCccCC
Confidence 4688999998643221 2223567999999997543 3344444434333222 223 347789998643
No 246
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=72.28 E-value=8.7 Score=24.79 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCcEEEEEEECCC-cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 46 NTEFVILVIDSTD-RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 46 ~~~~~l~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.++++++++|... .-...+ ...+..+ .. . .+++++.+|+|...
T Consensus 111 Ral~~lllldep~~gL~~lD-~~~l~~L-~~---~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLD-LEFMKHL-SK---V-VNIIPVIAKADTMT 154 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHH-HHHHHHH-HT---T-SEEEEEETTGGGSC
T ss_pred eeeeeeEEEecCCCcCCHHH-HHHHHHH-Hh---c-CcEEEEEeccccCC
Confidence 4688999998552 222222 2223333 22 2 89999999999765
No 247
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=71.39 E-value=9.2 Score=23.36 Aligned_cols=51 Identities=4% Similarity=0.005 Sum_probs=33.0
Q ss_pred HHhhccCCcEEEEEEE---CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 40 WSTYYTNTEFVILVID---STDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~d---~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
+...+..||++|++.- .+=+..+.++.+|+........+.++|+.+++.-.
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~ 114 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSP 114 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEES
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCC
Confidence 4445889999999853 22245667776665432233456789998887644
No 248
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=71.31 E-value=1.7 Score=28.14 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=25.3
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
...+.++|+++... ......+..+|.+++++...
T Consensus 103 ~yD~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGDS--AITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSCC--HHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCcc--HHHHHHHHHCCEEEEEEcCC
Confidence 35688999998753 33445678899999999854
No 249
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.12 E-value=14 Score=24.58 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=38.1
Q ss_pred CCEEEEEEEcCCCcchHHHH-------Hhhc-----cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW-------STYY-----TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~-------~~~~-----~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
++..+.+.||||........ ...+ ..++.+++|+|.... .+.+.. ...+... . ...-++.|
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~-~~~~~~~---~-~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ-AEEFSKV---A-DVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH-HHHHTTT---S-CCCEEEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH-HHHHhhc---C-CCcEEEEe
Confidence 56789999999986643111 0111 347899999997632 222222 2233211 1 12347889
Q ss_pred cCCCCC
Q psy6566 89 KQDIKN 94 (126)
Q Consensus 89 K~D~~~ 94 (126)
|.|...
T Consensus 263 k~d~~~ 268 (320)
T 1zu4_A 263 KMDSTS 268 (320)
T ss_dssp CGGGCS
T ss_pred CCCCCC
Confidence 998654
No 250
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=66.66 E-value=22 Score=23.46 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=36.3
Q ss_pred CCEEEEEEEcCCCcchHHHH-------Hhhc-----cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW-------STYY-----TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~-------~~~~-----~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
.+..+.+.||||........ ...+ ..++.+++|+|.... .+.......+.+. .++ .-++.|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~l~~a~~~~~~---~~i-~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNGLVQAKIFKEA---VNV-TGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHHHHHHHHHHHH---SCC-CEEEEE
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHHHHHHHHHhc---CCC-CEEEEe
Confidence 45678999999974433211 1112 247889999997632 2221112222221 222 345679
Q ss_pred cCCCCC
Q psy6566 89 KQDIKN 94 (126)
Q Consensus 89 K~D~~~ 94 (126)
|.|...
T Consensus 258 k~D~~~ 263 (306)
T 1vma_A 258 KLDGTA 263 (306)
T ss_dssp CGGGCS
T ss_pred CCCCcc
Confidence 999654
No 251
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=61.44 E-value=6.7 Score=27.41 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=29.4
Q ss_pred EEEEEEEcCCCcc--hHHHH--------HhhccCCcEEEEEEECCCcccHHHHHHH
Q psy6566 23 IHFIMWDLGGQQS--LRAAW--------STYYTNTEFVILVIDSTDRERISLTKEE 68 (126)
Q Consensus 23 ~~~~i~Dt~G~~~--~~~~~--------~~~~~~~~~~l~v~d~~~~~~~~~~~~~ 68 (126)
....+||..|.+. .+..+ ..++..+.+.++|+|.++. +.+....|
T Consensus 87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~ 141 (469)
T 1bif_A 87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMI 141 (469)
T ss_dssp CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHH
Confidence 4456899999843 33333 5567778888999999886 34333333
No 252
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=59.03 E-value=22 Score=25.44 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=35.2
Q ss_pred CCEEEEEEEcCCCcchHHHH-------Hhhc-----cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 21 KNIHFIMWDLGGQQSLRAAW-------STYY-----TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~-------~~~~-----~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
.+..+.+.||+|........ .... ...+-+++++|.+... +.......+.+. .++. .++.|
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~---~~it-gvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEA---VGLT-GITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHH---TCCS-EEEEE
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhh---cCCC-EEEEE
Confidence 45678899999985432211 1111 1356789999976432 222222222221 1233 46889
Q ss_pred cCCCC
Q psy6566 89 KQDIK 93 (126)
Q Consensus 89 K~D~~ 93 (126)
|.|-.
T Consensus 447 KLD~t 451 (503)
T 2yhs_A 447 KLDGT 451 (503)
T ss_dssp CGGGC
T ss_pred cCCCc
Confidence 99853
No 253
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=56.84 E-value=30 Score=20.86 Aligned_cols=62 Identities=6% Similarity=0.013 Sum_probs=34.1
Q ss_pred EEEEEcCCCcc-hHHHHHhhcc--CCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCC
Q psy6566 25 FIMWDLGGQQS-LRAAWSTYYT--NTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVL-IYANKQDI 92 (126)
Q Consensus 25 ~~i~Dt~G~~~-~~~~~~~~~~--~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~ 92 (126)
+.+-|+-|... +..... ... ++|.+++.-|+.+.. ..+.....+..+ .. ...|++ +.||+ |.
T Consensus 9 ~~iSD~H~~~~~~~~~~~-~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l-~~---~~~pv~~v~GNH-D~ 75 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVK-LAPDTGADAIALIGNLMPKAAKSRDYAAFFRIL-SE---AHLPTAYVPGPQ-DA 75 (228)
T ss_dssp EEEECCTTCHHHHHHHHT-HHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHH-GG---GCSCEEEECCTT-SC
T ss_pred EEEeeccCCHHHHHHHHH-HHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHH-Hh---cCCcEEEECCCC-Cc
Confidence 55668876532 222222 233 799999999988754 444444444433 22 235654 45665 54
No 254
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=53.70 E-value=35 Score=23.16 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=24.8
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
+...+.|+|+|..-.. .....+..+|.++++...+
T Consensus 246 ~~yD~VIID~pP~~~~--~~~~al~~aD~vliv~~p~ 280 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLDP--FLLNGLAASDLLLTPTPPA 280 (403)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECSS
T ss_pred hcCCEEEEECCCCccH--HHHHHHHHCCEEEEEecCc
Confidence 4467899999976543 2333456799999998754
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=52.52 E-value=34 Score=22.30 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=36.1
Q ss_pred CCEEEEEEEcCCCcch--HHHHH----hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSL--RAAWS----TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~--~~~~~----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..+.+.||||.... ..+.. ...-.++.+++|+|.... .+.......+... . ...-++.||.|...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~~~~~~~~~---~-~i~givlnk~d~~~ 251 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK---V-GVTGLVLTKLDGDA 251 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHHHHHHHHHH---T-CCCEEEEECGGGCS
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHHHHHHHhhc---C-CCCEEEEECCCCCc
Confidence 4567999999986433 11111 011258889999997632 2222222222111 1 12457889998654
No 256
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=46.04 E-value=62 Score=21.36 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=39.7
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~ 93 (126)
+...+.++|++|....... ...+..|+.++++.. .+..+++.+.+..+.+.......+.++. +++|+++..
T Consensus 162 d~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~-~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~ 233 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT 233 (314)
T ss_dssp SSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC
T ss_pred hcCceEeeccCCcchhhhh-HhHHhhCCeEEEEeC-CcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch
Confidence 3456788888765333222 123567999999875 3445666665544444332222344542 677877643
No 257
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=45.66 E-value=64 Score=21.58 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=34.6
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 41 STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 41 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
...+...|++|+. ..-+++++...++..++.. .++|+++.|--.-..
T Consensus 68 ~~~~~~~dG~VIt---HGTDTmeeTA~~Ls~ll~~---~~kPVVlTGAqrP~~ 114 (328)
T 1wls_A 68 EKEVWEYDGIVIT---HGTDTMAYSASMLSFMLRN---PPIPIVLTGSMLPIT 114 (328)
T ss_dssp HHHTTTCSEEEEE---CCGGGHHHHHHHHHHHEES---CSSEEEEECCSSCTT
T ss_pred HHHhccCCeEEEE---cCCchHHHHHHHHHHHHhC---CCCCEEEECCCCCCC
Confidence 3345678999984 6678899988877766655 578999998776543
No 258
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=44.18 E-value=54 Score=20.17 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=33.0
Q ss_pred EEcCC-CcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566 28 WDLGG-QQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK 89 (126)
Q Consensus 28 ~Dt~G-~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 89 (126)
.|++. .+..+...+.-++.+..+|+++--....+ ..+.-+++..... .++|+|+|--.
T Consensus 60 rDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s-~~v~wEIe~Ai~~---~~~PII~Vy~~ 118 (189)
T 3hyn_A 60 RDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANS-RALREEMNYGIGT---KGLPVIVIYPD 118 (189)
T ss_dssp TSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCC-HHHHHHHHHHTTT---TCCCEEEEETT
T ss_pred cccccHHHHHHHHHHHHHHhcCcEEEEEecCcccc-chhHHHHHHHHHh---cCCcEEEEECC
Confidence 34444 44455555666888988888875443333 2444344444322 57898776543
No 259
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=43.76 E-value=56 Score=20.22 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=23.4
Q ss_pred EEEEEcCCCcc-hHHHHHhh-ccCCcEEEEEEECCCccc
Q psy6566 25 FIMWDLGGQQS-LRAAWSTY-YTNTEFVILVIDSTDRER 61 (126)
Q Consensus 25 ~~i~Dt~G~~~-~~~~~~~~-~~~~~~~l~v~d~~~~~~ 61 (126)
+.+-|+-|... +....... -.++|.+++.-|+.+...
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred EEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 55668876533 33333222 257999999999987543
No 260
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=41.79 E-value=60 Score=20.42 Aligned_cols=60 Identities=7% Similarity=-0.033 Sum_probs=30.4
Q ss_pred CCEEEEEEEcCCCcch-HHHHHhh-ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSL-RAAWSTY-YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~-~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
.+..+.+.++.+.... ....... -+++|++|++- ..... .. +..+.+ .++|++++....+
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~~~~---~~---~~~l~~----~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 39 TQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISK-IEPND---PR---VRFMTE----RNMPFVTHGRSDM 100 (288)
T ss_dssp SSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEES-CCTTC---HH---HHHHHH----TTCCEEEESCCCS
T ss_pred cCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEec-CCCCc---HH---HHHHhh----CCCCEEEECCcCC
Confidence 4566677666543222 2222222 26899998752 22111 11 222221 4789888776543
No 261
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=39.92 E-value=70 Score=20.21 Aligned_cols=59 Identities=5% Similarity=0.072 Sum_probs=31.8
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhc-cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYY-TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
.+..+.+.++.+.+.......... +++|++|++-...+. . . +..+.+ .++|++++....
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---~-~---~~~l~~----~~iPvV~~~~~~ 98 (294)
T 3qk7_A 39 RGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED---F-R---LQYLQK----QNFPFLALGRSH 98 (294)
T ss_dssp TTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC---H-H---HHHHHH----TTCCEEEESCCC
T ss_pred CCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh---H-H---HHHHHh----CCCCEEEECCCC
Confidence 466677777665444444444333 579999886322111 1 1 222221 468988877654
No 262
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=39.20 E-value=68 Score=21.80 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=34.0
Q ss_pred hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 42 TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 42 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
..+...|++|+. ..-+++++...++..+++. ..+|+++.|--.-..
T Consensus 97 ~~~~~~dG~VIt---HGTDTmeeTA~~Ls~~l~~---~~kPVVlTGAmrP~~ 142 (358)
T 2him_A 97 AHYDDYDGFVIL---HGTDTMAYTASALSFMLEN---LGKPVIVTGSQIPLA 142 (358)
T ss_dssp HHGGGCSEEEEE---CCSTTHHHHHHHHHHHEET---CCSCEEEECCSSCTT
T ss_pred HHHhcCCeEEEe---cCchHHHHHHHHHHHHHhc---CCCCEEEeCCCCCCc
Confidence 345578999884 5567888888888777764 468999998776543
No 263
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=38.70 E-value=57 Score=21.70 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=34.9
Q ss_pred CEEEEEEEcCCCcchHH-----HHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 22 NIHFIMWDLGGQQSLRA-----AWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
+..+.+.||+|...... +.. ...-..+-.++++|..... ++......+.+. .+ ...++.||.|-.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~~-it~iilTKlD~~ 281 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---VK-IDGIILTKLDAD 281 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---SC-CCEEEEECGGGC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---cC-CCEEEEeCcCCc
Confidence 34566899999744221 110 0112478899999976543 232223333211 12 236788999864
No 264
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=37.63 E-value=86 Score=20.97 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=27.7
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~ 65 (126)
...+.++|++..-. ......+..+|.+++++..+ ..+...+
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~-~~s~~~~ 193 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATD-LFSFHAF 193 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCS-HHHHHHH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCC-hHHHHHH
Confidence 57799999996533 33444567799999999754 3344333
No 265
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=36.06 E-value=83 Score=19.96 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=30.1
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC----CCCCCCeEEEEEec
Q psy6566 41 STYYTNTEFVILVIDSTDRERISLTKEELYKMLNH----EDLSKAAVLIYANK 89 (126)
Q Consensus 41 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~piilv~nK 89 (126)
...+..||++|++.-.=+-.-...++.++..+... ..+.++|+.++++-
T Consensus 93 ~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 93 RELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp HHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 34577899999998655443333444444444321 23468898888874
No 266
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=34.27 E-value=76 Score=19.01 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=31.9
Q ss_pred HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC---------CCCCCCeEEEEEecCC
Q psy6566 40 WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH---------EDLSKAAVLIYANKQD 91 (126)
Q Consensus 40 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~piilv~nK~D 91 (126)
+...+..||++|+..-.-.-.-...++.|+..+... ..+.++|+.++.+--.
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg 121 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANG 121 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCC
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCC
Confidence 344578899999986544433334455555555431 2357788888776543
No 267
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=33.86 E-value=70 Score=18.97 Aligned_cols=47 Identities=6% Similarity=0.038 Sum_probs=28.4
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--CCCCCCeEEEEEec
Q psy6566 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDLSKAAVLIYANK 89 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK 89 (126)
.+..+|++|+..-.-...-...++.++..+... ..+.++|+.++++-
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeC
Confidence 477899999986433323333445555555332 12467888888876
No 268
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu horikoshii OT3, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii} SCOP: e.67.1.1
Probab=32.80 E-value=98 Score=19.83 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=44.6
Q ss_pred CceEEEEEECCEEEEEEEcCCCcchHHHHHhh-------ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566 12 GSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTY-------YTNTEFVILVIDSTDRERISLTKEELYKMLNHE 76 (126)
Q Consensus 12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 76 (126)
+-+...+..++..+++|...|-+........+ +.+...+-++.|+++. +++.+|+...++..
T Consensus 47 ~~~~~~l~~~~~~I~V~~seGk~~l~~~Lk~~l~a~~~~~~~v~~IgIarDaD~d---~~a~qSI~~~L~s~ 115 (241)
T 2p62_A 47 GEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDSVKLGLLNVEEVYVVRDVDEG---NDVFEWVLSFLRER 115 (241)
T ss_dssp TCCCEEEEETTEEEEEECSCCTTTHHHHHHHHHHHHHHTCCCEEEEEEEEESSSS---SCHHHHHHTTCTTC
T ss_pred ccchhhhcccCceEEEEeCcchhhHHHHHHHHHhCccccccccceEEEEEecCCC---ccHHHHHHHHHHhc
Confidence 33556777788999999999988876643322 4566788889998765 34667777777653
No 269
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=32.34 E-value=81 Score=18.76 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=25.0
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA 87 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 87 (126)
.++.||++|.++|...+++-....--+... .++|++.+.
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~EiGyA~a------lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFXIGFMRA------MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHHHHHHHH------TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceeehhhHhh------CCCeEEEEE
Confidence 478999999999977665443332112222 468988874
No 270
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=31.53 E-value=76 Score=18.66 Aligned_cols=42 Identities=7% Similarity=-0.080 Sum_probs=26.0
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
.++.||++|.++|..++++-....--+... .++|++++..+-
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A------~gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGMELGYALS------QGKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHHHHHHHH------TTCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHHHHHHHH------CCCeEEEEEcCC
Confidence 478999999999865554433222112222 478988886554
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=30.01 E-value=1.2e+02 Score=19.80 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=36.7
Q ss_pred CCEEEEEEEcCCCcchHH--HHH--hhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLRA--AWS--TYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~--~~~--~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 94 (126)
.+..+.+.||+|...... +.. ..+. ..+.+++|+|.+.. ...+..+...+ .. -+. .-++.||.|...
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~-~~---l~~-~giVltk~D~~~ 253 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF-SS---VPV-NQYIFTKIDETT 253 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT-SS---SCC-CEEEEECTTTCS
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH-hc---CCC-CEEEEeCCCccc
Confidence 456789999999765422 111 2232 36788999987632 23333322211 11 122 245669999754
No 272
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=27.24 E-value=1.3e+02 Score=20.32 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=24.9
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST 57 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~ 57 (126)
+...+.|+|+|..-... ....+..+|.++++....
T Consensus 243 ~~yD~ViiD~pp~~~~~--~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDAF--LKNALASANILFTPLPPA 277 (398)
T ss_dssp TTCSEEEEEECSCCSHH--HHHHHHHCSEEEEEECCS
T ss_pred ccCCEEEEeCCCCccHH--HHHHHHHCCEEEEEecCc
Confidence 45679999999765433 333455799999998754
No 273
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=26.77 E-value=1.2e+02 Score=21.26 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 46 NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 46 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
..|++|+. ..-++++....++..+++. ..+|+++.|--.-..
T Consensus 168 ~~DG~VIt---HGTDTMeeTA~~Lsl~l~~---~~KPVVlTGAqrP~~ 209 (438)
T 1zq1_A 168 GDYGVVVA---HGTDTMGYTAAALSFMLRN---LGKPVVLVGAQRSSD 209 (438)
T ss_dssp TCSEEEEE---CCSSSHHHHHHHHHHHEES---CCSCEEEECCSSCTT
T ss_pred CCCeEEEe---cCchhHHHHHHHHHHHHhC---CCCCEEEeCCCCCCC
Confidence 68898884 5567888888888777754 568999988776543
No 274
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=26.38 E-value=1.1e+02 Score=18.36 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=37.2
Q ss_pred CCEEEEEEEcCCCcchH----HHHHhhccC-CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566 21 KNIHFIMWDLGGQQSLR----AAWSTYYTN-TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK 93 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~----~~~~~~~~~-~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~ 93 (126)
+...+.+.|++|.-... ......... ...++++... ...+..++...++.+. . .+.+ .-++.|+.|..
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~-~~~~~~~~~~~i~~l~-~---~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGV-KLGCINHAMLTAQVIQ-H---AGLTLAGWVANDVTPP 180 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEEC-STTHHHHHHHHHHHHH-H---TTCCEEEEEEECCSSC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecC-CCCcHHHHHHHHHHHH-H---CCCcEEEEEEeCCCCc
Confidence 45678999998653210 011111111 2347777765 3455666655555442 2 3455 44889999864
No 275
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=26.33 E-value=1.1e+02 Score=18.48 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=29.6
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhC--CCCCCCCeEEEEEec
Q psy6566 41 STYYTNTEFVILVIDSTDRERISLTKEELYKMLN--HEDLSKAAVLIYANK 89 (126)
Q Consensus 41 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~piilv~nK 89 (126)
...+..||++|++.-.=+..-...++.++..+.. ...+.++|+.++.+-
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 3447889999998754443332333444444433 134578999888874
No 276
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=26.13 E-value=1.1e+02 Score=18.19 Aligned_cols=42 Identities=5% Similarity=0.054 Sum_probs=25.0
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ 90 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 90 (126)
.++.||++|.++|-..+++-....--+... .++|++++.+-.
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a------~gkPVi~~~~D~ 107 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGVASEIGVAYA------KGIPVVALYTDS 107 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHHHHHHHHHHH------TTCCEEEECCCG
T ss_pred HHHHCCEEEEECCCCCCCCCHHHHHHHHHH------CCCEEEEEEcCc
Confidence 488999999999866444332221112111 468888776543
No 277
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.50 E-value=1.1e+02 Score=19.31 Aligned_cols=60 Identities=5% Similarity=0.019 Sum_probs=29.8
Q ss_pred CCEEEEEEEcCCCcch-HHHHHhh-ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSL-RAAWSTY-YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~-~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
.+..+.+.++.+.... ....... -+++|++|++-.... . .. +..+ .. .++|++++....+
T Consensus 41 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~---~~---~~~l-~~---~~iPvV~i~~~~~ 102 (295)
T 3hcw_A 41 HGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-D---PI---KQML-ID---ESMPFIVIGKPTS 102 (295)
T ss_dssp TTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-C---HH---HHHH-HH---TTCCEEEESCCCS
T ss_pred CCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-h---HH---HHHH-Hh---CCCCEEEECCCCc
Confidence 4566666665443221 1222222 367999988632111 1 11 2222 12 4789988876654
No 278
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=25.47 E-value=1.2e+02 Score=18.36 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=29.6
Q ss_pred HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 41 STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 41 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
...+..||++|+..-.=+..-...++.++..+. ...+.++|+.++.+
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~-~~~l~gK~~~~v~t 126 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILD-TDALTGMPTIIAAT 126 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSC-TTTTTTCEEEEEEE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhh-hhhcCCCEEEEEEe
Confidence 345788999999976544433334444444443 23457889888877
No 279
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=24.90 E-value=57 Score=18.83 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 31 GGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 31 ~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
...+.+.......++.++.+|+++..+-..+ ......+..++......+..++-|.-+.|
T Consensus 58 ~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S-~wc~~El~~~~~~~~~~~~~iiPV~~~v~ 117 (154)
T 3h16_A 58 RPGDSLRRSIDKGLGSSRFGIVVLSTHFFKK-EWPQKELDGLFQLESSGRSRILPIWHKVS 117 (154)
T ss_dssp CTTCCHHHHHHHHHTSEEEEEEEEEHHHHTT-CCCHHHHHHHTCCCTTSCCCEEEEEESCC
T ss_pred CCccHHHHHHHHHHHhCcEEEEEeCcchhcC-hHHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 3334555555667889999888886221110 01233344454432223445666666655
No 280
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=24.68 E-value=86 Score=16.57 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=14.9
Q ss_pred EEEEEEECCCcccHHHHHHHHHHH
Q psy6566 49 FVILVIDSTDRERISLTKEELYKM 72 (126)
Q Consensus 49 ~~l~v~d~~~~~~~~~~~~~~~~~ 72 (126)
.++++||+.+......+.+.+...
T Consensus 5 ~vlV~YDI~~~krr~kv~k~l~~y 28 (91)
T 3exc_X 5 KLLVVYDVSDDSKRNKLANNLKKL 28 (91)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCchHHHHHHHHHHHh
Confidence 478889998765555454444443
No 281
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=24.61 E-value=99 Score=19.28 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=29.8
Q ss_pred CCEEEEEEEcCCCcch-HHHHHhh-ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSL-RAAWSTY-YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~-~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
.+..+.+.++.+.... ....... -+++|+++++-...+. .. +..+.+ .++|++++.+..+
T Consensus 42 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~----~~---~~~l~~----~~iPvV~~~~~~~ 103 (292)
T 3k4h_A 42 EGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND----RI---IQYLHE----QNFPFVLIGKPYD 103 (292)
T ss_dssp TTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC----HH---HHHHHH----TTCCEEEESCCSS
T ss_pred cCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh----HH---HHHHHH----CCCCEEEECCCCC
Confidence 4556666655543222 2222222 3578998875321111 11 222221 4789888877654
No 282
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=23.82 E-value=1.4e+02 Score=19.58 Aligned_cols=59 Identities=14% Similarity=-0.004 Sum_probs=34.4
Q ss_pred EEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCC
Q psy6566 25 FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDI 92 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~ 92 (126)
+.+-|+-|.... . .+..+|.+++.-|+++....++....+..+.+. +..+ +++.||+ |.
T Consensus 63 ~~iSD~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l---~~~~v~~V~GNH-D~ 122 (296)
T 3rl5_A 63 VCISDTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNL---PYEYKIVIAGNH-EL 122 (296)
T ss_dssp EEEBCCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTS---CCSEEEECCCTT-CG
T ss_pred EEEeeCCCCcch--h---ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhC---CCCeEEEEcCCc-cc
Confidence 455588776431 1 356899999999999866555544433333222 2234 4445555 54
No 283
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.63 E-value=1.4e+02 Score=18.51 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=32.8
Q ss_pred CCEEEEEEEcCCCcchH-HHHHh-hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566 21 KNIHFIMWDLGGQQSLR-AAWST-YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~-~~~~~-~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 91 (126)
.+..+.+.++.+..... ...+. .-+++|++++.-. +. .. .+..+. . .++|++++....+
T Consensus 36 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~--~~---~~---~~~~l~-~---~~iPvV~i~~~~~ 96 (276)
T 3jy6_A 36 RGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSF--SN---PQ---TVQEIL-H---QQMPVVSVDREMD 96 (276)
T ss_dssp TTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESS--CC---HH---HHHHHH-T---TSSCEEEESCCCT
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC--Cc---HH---HHHHHH-H---CCCCEEEEecccC
Confidence 46777888877653322 22222 2357899888632 11 22 233332 2 4799988876654
No 284
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=23.17 E-value=84 Score=16.48 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=13.6
Q ss_pred EEEEEEECCCcccHHHHHHHHHHH
Q psy6566 49 FVILVIDSTDRERISLTKEELYKM 72 (126)
Q Consensus 49 ~~l~v~d~~~~~~~~~~~~~~~~~ 72 (126)
.+++++|+.+......+.+.++.+
T Consensus 5 ~~lV~YDI~~~kr~~kv~k~l~~y 28 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKLANLLKSY 28 (90)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHTT
T ss_pred EEEEEEeCCChHHHHHHHHHHHHh
Confidence 367778887654444444444333
No 285
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=22.40 E-value=1.3e+02 Score=17.74 Aligned_cols=63 Identities=3% Similarity=-0.088 Sum_probs=37.6
Q ss_pred CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--CCCCCCeEEEEEecC
Q psy6566 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDLSKAAVLIYANKQ 90 (126)
Q Consensus 22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~ 90 (126)
+..+.+.|..... ...+..+|++++..-.-.-.-...++.++..+... ..+.+.++.++++--
T Consensus 34 g~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 34 GTEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp TEEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred CCeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 4566677765432 12355689999988665444444555555554320 234678888888753
No 286
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=22.20 E-value=1.6e+02 Score=18.79 Aligned_cols=47 Identities=6% Similarity=0.006 Sum_probs=31.6
Q ss_pred ccCCcEEEEEEECCCcccHHHHHHHHHHHhCC------------CCCCCCeEEEEEecC
Q psy6566 44 YTNTEFVILVIDSTDRERISLTKEELYKMLNH------------EDLSKAAVLIYANKQ 90 (126)
Q Consensus 44 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~piilv~nK~ 90 (126)
+..||++|+.+=.-.-.-...++.|+..+... ..+.+.+++++.+--
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~G 149 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTG 149 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCC
Confidence 77899999998766554445566677766432 124577888777654
No 287
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=21.90 E-value=1.4e+02 Score=20.65 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=32.8
Q ss_pred EEEEEEcCCCcc----hHHHH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 24 HFIMWDLGGQQS----LRAAW-STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 24 ~~~i~Dt~G~~~----~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
.+.+||++|-.. ..... ..-+...+..++ ++..... ..+..+...+.. .+.|++++.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~---kqrv~la~aL~~---~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK---KNDIDIAKAISM---MKKEFYFVRTKVDSD 188 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC---HHHHHHHHHHHH---TTCEEEEEECCHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc---HHHHHHHHHHHh---cCCCeEEEEecCccc
Confidence 578999998422 22221 222344455555 6654211 111123223222 357999999999853
No 288
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=21.72 E-value=1.9e+02 Score=19.37 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=30.4
Q ss_pred CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCccc---HHHHHHHHHHH
Q psy6566 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER---ISLTKEELYKM 72 (126)
Q Consensus 21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~ 72 (126)
+...+.++|+|..... .....+..+|.++++.... +.+ ..++...++.+
T Consensus 258 ~~yD~VIID~p~~~~~--~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~~l 309 (373)
T 3fkq_A 258 DNYDEIIVDLPFSLEI--EKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVVLL 309 (373)
T ss_dssp SCCSEEEEECCCCCCH--HHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHHHh
Confidence 3457899999854332 3444678899999998653 333 44444444444
No 289
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=20.99 E-value=1.4e+02 Score=17.74 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=40.2
Q ss_pred EEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-------CCCCCCeEEEEEecC
Q psy6566 25 FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-------EDLSKAAVLIYANKQ 90 (126)
Q Consensus 25 ~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~piilv~nK~ 90 (126)
+.+.|...........+ .+..||++|+.+-.-.-.-...++.|+..+... ..+.+++++++.+--
T Consensus 31 v~v~dL~~~~D~~~~~~-~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g 102 (177)
T 3ha2_A 31 VTWHPLVADFNVEQEQS-LLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTG 102 (177)
T ss_dssp EEEEECCTTCCHHHHHH-HHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEES
T ss_pred EEEEECCCcccHHHHHH-HHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCC
Confidence 56666665444444433 578899999998766544445566677665431 234677777766543
No 290
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=20.64 E-value=1.5e+02 Score=20.68 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.7
Q ss_pred EEEEECCCcccHHHHHHHHHHHhCC
Q psy6566 51 ILVIDSTDRERISLTKEELYKMLNH 75 (126)
Q Consensus 51 l~v~d~~~~~~~~~~~~~~~~~~~~ 75 (126)
-.++|.+++.+.+....||..+...
T Consensus 299 ~~~VDl~d~~s~~~a~~WW~~lT~~ 323 (427)
T 4e6n_A 299 HILVDVTDAESVDKGIKWWEDLTAS 323 (427)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHT
T ss_pred cEEeeCCCHHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999865
No 291
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=20.58 E-value=1.5e+02 Score=17.68 Aligned_cols=45 Identities=20% Similarity=0.065 Sum_probs=27.5
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 88 (126)
.+..+|+++++.-.-...-...++.++..+ ....+.+.|+.++++
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l-~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDIL-PQFALAGKAALPLAT 110 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTS-CTTTTTTCEEEEEEE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhc-cccccCCCEEEEEEE
Confidence 477899999998655433333333333332 223456889888887
No 292
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=20.10 E-value=2e+02 Score=19.14 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=31.5
Q ss_pred hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566 43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK 93 (126)
Q Consensus 43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 93 (126)
.+...|++|+. ..-+++++...++..++ . ..+|+++.|--.-..
T Consensus 76 ~~~~~dG~VIt---HGTDTmeeTA~~Ls~~l-~---~~kPVVlTGAmrP~~ 119 (326)
T 1nns_A 76 DCDKTDGFVIT---HGTDTMEETAYFLDLTV-K---CDKPVVMVGAMRPST 119 (326)
T ss_dssp HGGGCSEEEEE---CCSSSHHHHHHHHHHHC-C---CCSCEEEECCSSCTT
T ss_pred HhhcCCcEEEE---cCchhHHHHHHHHHHhc-C---CCCCEEEeCCCCCCc
Confidence 34444999884 55678888888777666 3 468999998776543
Done!