RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6566
(126 letters)
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 211 bits (540), Expect = 8e-72
Identities = 55/126 (43%), Positives = 87/126 (69%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ +VV T PT+G N+E + +KNI F +WDLGGQ +R W Y+++T+ VI V+DSTDR+
Sbjct: 44 LGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD 103
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R+ + K ELY +L+ ++L K+ +LI+ANKQD+ ++ S EI+ L ++SI + W I
Sbjct: 104 RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKS 163
Query: 121 CALTGE 126
+ TG+
Sbjct: 164 SSKTGD 169
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 210 bits (537), Expect = 1e-71
Identities = 60/126 (47%), Positives = 86/126 (68%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EVV T PTIG NVE V +KN+ F +WDLGG S+R W YY+NT+ VI V+DS DR+
Sbjct: 29 VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++K EL ML E+L KA ++++ANKQD++ +M+ E++N L L ++K ++W I
Sbjct: 89 RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148
Query: 121 CALTGE 126
A G
Sbjct: 149 SATKGT 154
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 210 bits (537), Expect = 2e-71
Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
MNEVVHTSPTIGSNVEE++ N F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 43 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RIS+T+EELYKML HEDL KA +LI+ANKQD+K M+ EIS L LTSIK QWHIQ+C
Sbjct: 103 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162
Query: 121 CALTGE 126
CALTGE
Sbjct: 163 CALTGE 168
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 210 bits (537), Expect = 2e-71
Identities = 51/126 (40%), Positives = 79/126 (62%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+V SPT+G N++ + + +WD+GGQ+SLR+ W Y+ +T+ +I V+DS DR+
Sbjct: 40 GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 99
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R+ + EL +L E L+ A +LI+ANKQD+ ++S I L+L SI+ W IQ C
Sbjct: 100 RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGC 159
Query: 121 CALTGE 126
A+TGE
Sbjct: 160 SAVTGE 165
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 209 bits (534), Expect = 3e-71
Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 22 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R++ +EEL +ML ++L A +L++ANKQD+ N+M+ EI++ L L S++ + W+IQ+
Sbjct: 82 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 141
Query: 121 CALTGE 126
CA +G+
Sbjct: 142 CATSGD 147
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 213 bits (545), Expect = 7e-71
Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 187 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 246
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R++ +EEL +ML ++L A +L++ANKQD+ N+M+ EI++ L L S++ + W+IQ+
Sbjct: 247 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 306
Query: 121 CALTGE 126
CA +G+
Sbjct: 307 CATSGD 312
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 208 bits (532), Expect = 1e-70
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
++ H +PT G N++ V + +WD+GGQ+ +R W +Y+ NT+ +I VIDS DR+
Sbjct: 38 SEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK 97
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R T +EL ++L E LS VLI+ANKQD+ + EI+ L+L +I+ + W IQSC
Sbjct: 98 RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSC 157
Query: 121 CALTGE 126
ALTGE
Sbjct: 158 SALTGE 163
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 208 bits (532), Expect = 1e-70
Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
MNEVVHTSPTIGSNVEE++ N F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RIS+T+EELYKML HEDL KA +LI+ANKQD+K M+ EIS L LTSIK QWHIQ+C
Sbjct: 98 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157
Query: 121 CALTGE 126
CALTGE
Sbjct: 158 CALTGE 163
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 207 bits (530), Expect = 2e-70
Identities = 59/126 (46%), Positives = 84/126 (66%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ EVV T PTIG NVE + +KN+ +WDLGGQ S+R W YY +T VI V+DSTD++
Sbjct: 40 IGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD 99
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R+S +EL+ ML E+L AA+L++ANKQD ++S E+S L+L +K + W I +
Sbjct: 100 RMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159
Query: 121 CALTGE 126
A+ GE
Sbjct: 160 SAIKGE 165
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 216 bits (551), Expect = 7e-70
Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V T PT+G NVE V +KN+ F +WD+GGQ +R W YYT T+ +I V+D DR+
Sbjct: 344 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 403
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
RI ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q
Sbjct: 404 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 463
Query: 121 CALTGE 126
CA +G+
Sbjct: 464 CATSGD 469
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 203 bits (520), Expect = 1e-68
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 1 MNEV-VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
+ PT+G N+ ++ N+ +WD+GGQ R+ W Y ++ ++D+ D+
Sbjct: 44 SGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ 103
Query: 60 ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQS 119
E+I +K EL+ +L+ L VL+ NK+D+ ++ E+ ++L++I+ ++ S
Sbjct: 104 EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 163
Query: 120 CCALTGE 126
+
Sbjct: 164 ISCKEKD 170
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 202 bits (515), Expect = 5e-68
Identities = 56/126 (44%), Positives = 85/126 (67%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRE
Sbjct: 51 LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 110
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
R+ + +EL KML ++L A +L++ANKQD+ N+M E+++ L L ++ + W++Q+
Sbjct: 111 RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 170
Query: 121 CALTGE 126
CA G
Sbjct: 171 CATQGT 176
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 201 bits (513), Expect = 1e-67
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + PT EE+ NI F +DLGG R W Y+ ++ ++D+ D E
Sbjct: 45 NDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 104
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ------ 114
R + EL + N +L +I NK D N++S E+ + L L + Q
Sbjct: 105 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQR 164
Query: 115 -WHIQSCCALTGE 126
+ C +
Sbjct: 165 PVEVFMCSVVMRN 177
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 197 bits (504), Expect = 3e-66
Identities = 47/126 (37%), Positives = 79/126 (62%), Gaps = 2/126 (1%)
Query: 3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
+ + PTIG ++E+ ++ F ++D+ GQ R W YY + +I VIDS+DR R+
Sbjct: 47 QSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRM 106
Query: 63 SLTKEELYKMLNHEDL--SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
+ KEEL +LNH D+ + +L +ANK D++++++ V++S LL L +IK + WHI +
Sbjct: 107 VVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICAS 166
Query: 121 CALTGE 126
A+ GE
Sbjct: 167 DAIKGE 172
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 194 bits (494), Expect = 1e-64
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + PT+ EE+ + F +DLGG R W Y ++ ++D D E
Sbjct: 47 DDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE 106
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLL------------DLT 108
R+ +KEEL ++ E ++ +LI NK D ++S + + L
Sbjct: 107 RLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLK 166
Query: 109 SIKKQQWHIQSCCALTGE 126
+ + + C L +
Sbjct: 167 ELNARPLEVFMCSVLKRQ 184
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 152 bits (387), Expect = 2e-48
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIH---FIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDS 56
+ T +I + N + DL G +SLR + ++ V+ V+DS
Sbjct: 29 TGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 88
Query: 57 TDRER-ISLTKEELYKMLNHEDLSKAA--VLIYANKQDIKNSMSPVEISNLLDLTSIKKQ 113
+R + E LY++L K + +LI NKQDI + S I L+ +
Sbjct: 89 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR 148
Query: 114 QWHIQSCCALTGE 126
+ L
Sbjct: 149 VTRSAAPSTLDSS 161
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 127 bits (322), Expect = 1e-38
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 1 MNEVVHTSPTIGSN-----VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVID 55
++ T+ + + EV F ++ + GQ A+ + ++ V D
Sbjct: 47 VSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD 106
Query: 56 STDRERISLTKEELYKMLN-----HEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI 110
S R+ E + M L ++I NK+D+ +++ + ++D
Sbjct: 107 SAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG- 164
Query: 111 KKQQWHIQSCCALTGE 126
++ + A G+
Sbjct: 165 ---KFPVLEAVATEGK 177
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 125 bits (316), Expect = 7e-38
Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEF----VILVIDS 56
+ V T + + + + D G LR S Y +I ++DS
Sbjct: 70 TDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 128
Query: 57 -TDRERISLTKEELYKMLNHEDLSKAA---VLIYANKQDIKNSMSPVEISNLLD--LTSI 110
D ++++ T E L +L+ + S +LI NK ++ + P +I + L+ + +
Sbjct: 129 TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV 188
Query: 111 KKQQ 114
+++
Sbjct: 189 IERR 192
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 126 bits (318), Expect = 7e-38
Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEF----VILVIDS- 56
+ V T + + + + D G LR S Y +I ++DS
Sbjct: 35 DSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 93
Query: 57 TDRERISLTKEELYKMLNHEDLSKAA---VLIYANKQDIKNSMSPVEISNLL--DLTSIK 111
D ++++ T E L +L+ + S +LI NK ++ + P +I + L ++ +
Sbjct: 94 VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVI 153
Query: 112 K-QQWHIQSCCALTGE 126
+ ++ + E
Sbjct: 154 ERRKKSLNEVERKINE 169
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 103 bits (258), Expect = 7e-29
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE--ELYKMLNHE--DLSKAAV 83
G + S+ + I V ++ +R E + M + + +
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
++ Q M +++ L L + W +Q A T
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLT 208
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 89.3 bits (221), Expect = 1e-23
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 1 MNEVVHTSPTIGSNVEEVIWK-NIHFIMWDLGGQQSLRAAWS---TYYTNTEFVILVIDS 56
NE + T +++ ++F +WD GQ + T +I VID+
Sbjct: 46 PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA 105
Query: 57 TDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91
D +LT+ + ++ ++ +K D
Sbjct: 106 QDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 91.3 bits (226), Expect = 2e-23
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 29 DLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE--ELYKMLNHED--LSKAAVL 84
G + S+ + I V ++ +R E + M + + ++
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+ Q M +++ L L + W +Q A T
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLT 293
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 66.9 bits (163), Expect = 2e-14
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 9/134 (6%)
Query: 2 NEVVHTSPTIGSNVEEVI-WKNIHFIMWDLGGQQS-----LRAAWSTYYTNTEFVILVID 55
+ TI + N+ +WD GGQ + + +I V D
Sbjct: 30 FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFD 89
Query: 56 STDRERISLTKEELYKMLNHEDLSK-AAVLIYANKQDIKNSMSPVEISNLL--DLTSIKK 112
E + + + S A + + +K D+ E+ ++ +L+
Sbjct: 90 VESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS 149
Query: 113 QQWHIQSCCALTGE 126
+ T
Sbjct: 150 EFGFPNLIGFPTSI 163
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 50.4 bits (120), Expect = 1e-08
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWST---YYTNTEFVILVIDSTD 58
+ ++ T ++E I + +L GQ + + + ++ VIDS D
Sbjct: 26 LDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD 84
Query: 59 RERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91
++T + ++ + + +K D
Sbjct: 85 EYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 43.6 bits (102), Expect = 3e-06
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
T G + ++F M+D+GGQ+ R W + + +I V+ S+ + +
Sbjct: 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQ 262
Query: 69 LYKM----------LNHEDLSKAAVLIYANKQDI 92
++ N+ L +V+++ NKQD+
Sbjct: 263 TNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 43.5 bits (102), Expect = 4e-06
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
T G +K++HF M+D+GGQ+S R W + +I + +D + +
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 67 EELYKML----------NHEDLSKAAVLIYANKQDI 92
EE+ +M N++ + +++++ NK+D+
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 43.1 bits (101), Expect = 4e-06
Identities = 18/96 (18%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
PT G +++ F M D+GGQ+S R W + N ++ ++ ++ +++ +
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 67 EELYKM----------LNHEDLSKAAVLIYANKQDI 92
+ +M + + ++V+++ NK+D+
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 41.2 bits (96), Expect = 2e-05
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 13 SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM 72
S V E + ++D+GGQ++ R W + VI ++ ++ E+ +M
Sbjct: 173 SPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM 232
Query: 73 ----------LNHEDLSKAAVLIYANKQDI 92
L K + +++ NK DI
Sbjct: 233 METKELFDWVLKQPCFEKTSFMLFLNKFDI 262
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 40.9 bits (95), Expect = 3e-05
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
PT G + + KN+ F M D+GGQ+S R W + + ++ ++ S++ +++ +
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 67 EELYKM----------LNHEDLSKAAVLIYANKQDI 92
+ ++ +N+ S +++++ NK D+
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 40.0 bits (93), Expect = 6e-05
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
+P I + K F WD GGQ+ + A+ + T + +L++DS
Sbjct: 81 KQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK--- 137
Query: 66 KEELYKMLNHEDLSKAAVLIYANKQDIKNSMS 97
+ + K+ V++ NK D S +
Sbjct: 138 -HYWLRHIEKYG-GKSPVIVVMNKIDENPSYN 167
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 38.1 bits (89), Expect = 3e-04
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 22/98 (22%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
T+G VE I F +WD GQ+ YY + I++ D T R
Sbjct: 46 ATLG--VEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT- 102
Query: 63 SLTKEELYKMLN--HEDLSKAA----VLIYANKQDIKN 94
YK + H DL + +++ NK DIK+
Sbjct: 103 -------YKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 37.0 bits (86), Expect = 5e-04
Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 2 NEVVHTSPTIGS-------NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVI 54
+++ S T+G + + +++ +WD G++ + + T + V
Sbjct: 28 SDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVY 87
Query: 55 DSTDRE 60
D + +
Sbjct: 88 DLSKGQ 93
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 36.7 bits (85), Expect = 6e-04
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
+ F +WD GQ+ + YY N + ++V D T + + + ++
Sbjct: 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KD 108
Query: 81 AAVLIYANKQDIKNSMSPVEIS 102
+ + NK D +++
Sbjct: 109 IIIALVGNKIDXLQEGGERKVA 130
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 34.5 bits (80), Expect = 0.004
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
WD GQ+ ++ +Y + +LV D T+ E I ++E N +
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122
Query: 85 IYANKQDIKNS 95
I NK D + S
Sbjct: 123 ILGNKIDAEES 133
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 34.6 bits (80), Expect = 0.004
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
T+G ++ K I +WD G + R + YY IL+ D T+ E
Sbjct: 39 STVG--IDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 34.2 bits (79), Expect = 0.004
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG VE +V K I +WD GQ+ R S YY +LV D
Sbjct: 36 STIG--VEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHL 91
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 33.8 bits (78), Expect = 0.007
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHED 77
+ + +WD GQ+ ++ +Y + +LV D T + + ++E + D
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 78 LSKAAVLIYANKQDIKN 94
++ NK D++N
Sbjct: 115 PENFPFVVLGNKIDLEN 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.007
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 41/116 (35%)
Query: 6 HTSPTIGSNVEEVIWKN-----IHFIMWDLGGQ--QSLRAAWSTYYTNTEFVILVIDSTD 58
H T G ++ +++ N IHF GG+ + +R Y+ ++ ++
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHF-----GGEKGKRIRE----NYSA-----MIFETIV 1697
Query: 59 RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
++ E+++K +N E + + S LL T Q
Sbjct: 1698 DGKLKT--EKIFKEIN-EHSTS---YTFR---------SEKG---LLSATQF--TQ 1733
Score = 30.0 bits (67), Expect = 0.18
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 26/81 (32%)
Query: 31 GGQ-------QSLRAAWSTYYTNTEFVILVIDSTDRE--RISLTKEELYKM-------LN 74
GGQ + LR + TY+ +I T E R +L E+++ L
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 75 HED-------LSKAAV---LI 85
+ L + LI
Sbjct: 221 NPSNTPDKDYLLSIPISCPLI 241
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 33.7 bits (78), Expect = 0.007
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG VE + + +WD G + RA S YY +LV D T +
Sbjct: 56 TTIG--VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQ 111
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 33.8 bits (78), Expect = 0.008
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG V+ E+ K I +WD GQ+ R S+YY +I+V D TD+E
Sbjct: 47 STIG--VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 33.3 bits (77), Expect = 0.009
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG VE +V K I +WD G + RA S YY +LV D
Sbjct: 60 STIG--VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHL 115
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 33.5 bits (77), Expect = 0.009
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG VE E+ K I +WD GQ+ RA S YY ++V D +
Sbjct: 44 STIG--VEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSS 99
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 33.4 bits (77), Expect = 0.009
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
T+G ++ K + +WD GQ+ R + YY IL+ D T+ E
Sbjct: 54 STVG--IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE 109
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 33.4 bits (77), Expect = 0.009
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 8 SPTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
+ TIG V+ V +WD GQ+ R +YY + VILV D T R+
Sbjct: 45 AATIG--VDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT 102
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
L ++ + + ++ NK D +N
Sbjct: 103 FVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 33.3 bits (77), Expect = 0.010
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
WD+GGQ Y + V+LV D T+ E + + K+ + ++ V
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVA 119
Query: 85 IYANKQDIKN 94
+ NK D+++
Sbjct: 120 LVGNKIDLEH 129
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 33.3 bits (77), Expect = 0.011
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG V+ E+ + + +WD GQ+ R STYY T VI+V D T E
Sbjct: 40 TTIG--VDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAE 95
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 33.0 bits (76), Expect = 0.011
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
T+G ++ K I +WD GQ+ R + YY +L+ D ++E
Sbjct: 53 STVG--IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE 108
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 32.9 bits (76), Expect = 0.012
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
WD GQ+ R+ + +Y ++ +L D + +S K+E + ++ +
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 85 IYANKQDIKN 94
I NK DI
Sbjct: 121 ILGNKIDISE 130
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 33.1 bits (76), Expect = 0.012
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG ++ ++ K + +WD GQ+ R + YY +ILV D TD
Sbjct: 51 TTIG--IDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDER 106
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 32.9 bits (76), Expect = 0.012
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG ++ E+ K I +WD GQ+ R + YY ++LV D T+ +
Sbjct: 39 STIG--IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK 94
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 33.0 bits (76), Expect = 0.013
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG VE + K I +WD GQ+S R+ +YY +LV D T RE
Sbjct: 52 LTIG--VEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 107
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 33.1 bits (76), Expect = 0.013
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 9 PTIG----SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG S + + + +WD G + R+ +Y ++ ++V D T+
Sbjct: 47 ATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVN 102
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 33.1 bits (76), Expect = 0.013
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLN--HEDL 78
I F +WD GQ+ YY IL D T R + L ++
Sbjct: 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT--------CQNLARWVKEF 110
Query: 79 SKAA-----VLIYANKQDIKN 94
+++ ANK DIKN
Sbjct: 111 QAVVGNEAPIVVCANKIDIKN 131
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 33.0 bits (76), Expect = 0.013
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG VE V K + +WD GQ+ R+ +YY +LV D T RE
Sbjct: 56 HTIG--VEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE 111
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 32.9 bits (76), Expect = 0.014
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG ++ ++ K + +WD GQ+ R + YY +ILV D TD
Sbjct: 34 TTIG--IDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDER 89
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 33.0 bits (76), Expect = 0.014
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG V+ E+ K I +WD GQ+ R S+YY +I+V D TD+E
Sbjct: 64 STIG--VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 119
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 32.9 bits (76), Expect = 0.014
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG VE EV + I +WD GQ+ RA +YY ++V D T R
Sbjct: 46 HTIG--VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS 101
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 32.6 bits (75), Expect = 0.017
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG V+ E+ + + +WD GQ+ R+ +YY + +IL D T E
Sbjct: 57 ATIG--VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE 112
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 32.2 bits (74), Expect = 0.021
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
T+G ++ +V + MWD GQ+ R+ YY + ++L+ D T++
Sbjct: 42 STVG--IDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKA 97
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 32.2 bits (74), Expect = 0.022
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
T+G V+ E+ K I +WD GQ+ + S YY + + +ILV D T +E
Sbjct: 57 STVG--VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE 112
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 32.2 bits (74), Expect = 0.024
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG VE V K + +WD GQ+ R+ +YY +LV D T RE
Sbjct: 41 HTIG--VEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE 96
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 32.1 bits (74), Expect = 0.026
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-----EELYKMLNH 75
K ++ +WD GQ+ A YY ++ ILV D TD + S K +EL KML
Sbjct: 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDED--SFQKVKNWVKELRKMLG- 109
Query: 76 EDLSKAAVLIYANKQDIKN 94
++ + I NK D++
Sbjct: 110 ---NEICLCIVGNKIDLEK 125
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 32.2 bits (74), Expect = 0.027
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG V+ E+ K + +WD GQ+ R +YY + IL D T R
Sbjct: 60 STIG--VDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS 115
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 31.8 bits (73), Expect = 0.030
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ F++WD GQ+ + YY + ++V D T ++
Sbjct: 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQD 109
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 31.8 bits (73), Expect = 0.034
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + +WD GQ+ R+ +Y ++ ++V D T+
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 100
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 31.7 bits (73), Expect = 0.034
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
PTIG + + F++WD G + RA YY + I+V D T E
Sbjct: 37 PTIG--ASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEE 92
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 31.5 bits (72), Expect = 0.045
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG V+ E+ K + +WD GQ+ R S+YY + +I+V D TD+E
Sbjct: 39 STIG--VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE 94
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 31.0 bits (71), Expect = 0.062
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ F +WD GQ+ + YY + I+V D T+ E
Sbjct: 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE 92
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 31.1 bits (71), Expect = 0.067
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ IH +WD G + R+ + ++ + +L+ D T+ +
Sbjct: 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQ 107
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 31.0 bits (71), Expect = 0.069
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
TIG V + F +WD GQ+ + YY I+V D T++
Sbjct: 43 STIG--AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQA 98
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 30.9 bits (70), Expect = 0.069
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
NI F +WD GQ+ + YY I+V D ++
Sbjct: 91 CNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSN 130
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 30.6 bits (70), Expect = 0.075
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ+ A Y +LV DR + ++ ++ + +D VL
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV--VL 119
Query: 85 IYANKQDIKN 94
+ NK D+++
Sbjct: 120 V-GNKADLES 128
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 30.7 bits (70), Expect = 0.077
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 6 HTSPTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
+ S T+G V+ V + +WD GQ+ R+ +Y+ + V+L+ D T
Sbjct: 56 NISATLG--VDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCE 113
Query: 60 E 60
+
Sbjct: 114 K 114
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 30.2 bits (69), Expect = 0.097
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ+ A Y + ++V TD+ E + + + ++ + E +L
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM--IL 128
Query: 85 IYANKQDIKN 94
+ ANK D+ +
Sbjct: 129 V-ANKVDLMH 137
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 30.1 bits (69), Expect = 0.100
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ+ A Y E + V + E I +E++ ++ + +D+ VL
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM--VL 113
Query: 85 IYANKQD 91
+ NK D
Sbjct: 114 V-GNKSD 119
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 30.3 bits (69), Expect = 0.12
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 19 IWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNH 75
++ + D G + S Y+ + ILV D + E E L
Sbjct: 75 LF------LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD 128
Query: 76 EDLSKAAVLIYANKQDIKNSMSPVE 100
+ AVL+ ANK D+ V
Sbjct: 129 RERPLRAVLV-ANKTDLPPQRHQVR 152
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 29.9 bits (68), Expect = 0.14
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ+ A Y E + V + I+L +E++ ++ + +D+ VL
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM--VL 131
Query: 85 IYANKQD 91
+ NK D
Sbjct: 132 V-GNKCD 137
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 30.1 bits (68), Expect = 0.14
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 9 PTIGSN---VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
PT+ N E+ + I +WD G Y +++ V++ D + E +
Sbjct: 38 PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 97
Query: 66 KEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
++ + +L+ K D++ +S + + T + Q
Sbjct: 98 LKKWKGEIQE-FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 145
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 29.7 bits (68), Expect = 0.16
Identities = 17/92 (18%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 9 PTIG-SNVEEVIWKNIHFIM--WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERI 62
PTI +E+ + ++ D G + + Y N + ILV ++ + I
Sbjct: 34 PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI 93
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
++++ ++ +E + +L+ NK D+++
Sbjct: 94 KPMRDQIIRVKRYEKVPV--ILV-GNKVDLES 122
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 29.9 bits (68), Expect = 0.16
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ+ A Y E + V + E I +E++ ++ + ED+ VL
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM--VL 114
Query: 85 IYANKQD 91
+ NK D
Sbjct: 115 V-GNKCD 120
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 29.9 bits (68), Expect = 0.17
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 9 PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAW-STYYTNTEFVILVIDSTDR-- 59
TIG V+ ++ + I +WD GQ+ R + YY N V+ V D T+
Sbjct: 51 ATIG--VDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS 108
Query: 60 -ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
+ EE + L D+ + +L+ NK D+++
Sbjct: 109 FHSLPAWIEECKQHLLANDIPR--ILV-GNKCDLRS 141
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 29.4 bits (67), Expect = 0.19
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D G + A Y N + LV T + + +E++ ++ + ED+ +L
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM--IL 113
Query: 85 IYANKQD 91
+ NK D
Sbjct: 114 V-GNKCD 119
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 29.4 bits (67), Expect = 0.20
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ TY + ILV T E I + +L M+ + +L
Sbjct: 59 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI--ML 116
Query: 85 IYANKQD 91
+ NK+D
Sbjct: 117 V-GNKKD 122
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 29.4 bits (66), Expect = 0.22
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%)
Query: 9 PTIGSN---VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
PT+ N V K ++ +WD GQ+ Y T+ ++
Sbjct: 61 PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV 120
Query: 66 KEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ-----WHIQS- 119
+ + Y + H +++ K D+++ +E LT I Q I +
Sbjct: 121 RAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179
Query: 120 ----CCALTGE 126
C ALT
Sbjct: 180 KYLECSALTQR 190
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 29.3 bits (66), Expect = 0.22
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 14/131 (10%)
Query: 9 PTIGSN---VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
PT+ N EV K + +WD GQ+ Y +T+ +++ + +
Sbjct: 56 PTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 115
Query: 66 KEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWH-----IQS- 119
E+ + H +++ NK+D++ + ++ ++ I +
Sbjct: 116 PEKWTPEVKH-FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF 174
Query: 120 ----CCALTGE 126
C A T E
Sbjct: 175 GYLECSAKTKE 185
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 29.6 bits (67), Expect = 0.22
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
WD GQ+ R+ + ++ + +L+ D T + + +L E+ VL
Sbjct: 89 WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--VL 146
Query: 85 IYANKQDIKN 94
I NK D+ +
Sbjct: 147 I-GNKADLPD 155
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A
3ti7_A
Length = 340
Score = 29.7 bits (67), Expect = 0.23
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 16/54 (29%)
Query: 28 WDLGGQQSLRA--AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79
W + ++A W +T V+ V+D+ +L+H DL+
Sbjct: 11 WHYFDRYGVKADKVWDMGFTGQNVVVAVVDT--------------GILHHRDLN 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 29.0 bits (66), Expect = 0.25
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ+ A Y+ + E + V T+ + +E++ ++ E++ +L
Sbjct: 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF--LL 114
Query: 85 IYANKQD 91
+ NK D
Sbjct: 115 V-GNKSD 120
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 29.0 bits (66), Expect = 0.27
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 28 WDLGGQQSLRAAW-STYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAV 83
+D+ Q + ++V TDR ++ T L H DL +
Sbjct: 56 YDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV--I 113
Query: 84 LIYANKQDIKNS 95
L+ NK D+ S
Sbjct: 114 LV-GNKSDLARS 124
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 28.6 bits (65), Expect = 0.36
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
WD GQ+ A YY + +LV +TDRE
Sbjct: 59 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE 91
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 28.7 bits (65), Expect = 0.39
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 28 WDLGGQQSLRAAW-STYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAV 83
+D+ Q + ++V TDR ++ T L H DL +
Sbjct: 77 YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV--I 134
Query: 84 LIYANKQDIKNS 95
L+ NK D+ S
Sbjct: 135 LV-GNKSDLARS 145
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.4 bits (64), Expect = 0.52
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ+ A Y+ + E + V T+ + +E++ ++ E++ +L
Sbjct: 67 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF--LL 124
Query: 85 IYANKQD 91
+ NK D
Sbjct: 125 V-GNKSD 130
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 28.2 bits (64), Expect = 0.56
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
+D+ Q R + ++V TD+ E+ S + +L + +D+ +L
Sbjct: 54 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI--IL 111
Query: 85 IYANKQDIKNS 95
+ NK D+ S
Sbjct: 112 V-GNKSDLVRS 121
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 28.3 bits (63), Expect = 0.57
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 9 PTIGSN---VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
PT+ N E + + +WD G Y++++ V+L D + E
Sbjct: 58 PTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE 112
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 27.9 bits (63), Expect = 0.63
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D GQ+ A Y+ + E + V T+ + +E++ ++ E++ +L
Sbjct: 71 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF--LL 128
Query: 85 IYANKQD 91
+ NK D
Sbjct: 129 V-GNKSD 134
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 27.8 bits (62), Expect = 0.77
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 9 PTIGSN---VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
PT+ N E+ + I +WD G Y +++ V++ D + E +
Sbjct: 59 PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 118
Query: 66 KEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE 100
++ + +L+ K D++ +S +
Sbjct: 119 LKKWKGEIQE-FCPNTKMLLVGCKSDLRTDVSTLV 152
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 27.8 bits (62), Expect = 0.80
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K ++ +WD GQ+ Y T+ ++ + + Y + H
Sbjct: 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPN 109
Query: 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ-----WHIQS-----CCALTGE 126
+++ K D+++ +E LT I Q I + C ALT
Sbjct: 110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 165
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller,
glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB:
4e8c_A
Length = 595
Score = 27.8 bits (61), Expect = 1.2
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 18 VIWKNIHFI--MWDLGGQQSLR--AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73
V + N + W++G SL ++ N +I + +E I LT++ K +
Sbjct: 532 VAFVNGQNLGRFWNVGPTLSLYIPHSYLKEGAN-RIIIFETEGQYKEEIHLTRKPTLKHI 590
Query: 74 NHEDL 78
E+L
Sbjct: 591 KGENL 595
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.2 bits (61), Expect = 1.2
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 9 PTIG---SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERI 62
PT+ S + + H + D GQ ++ +LV T + I
Sbjct: 55 PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI 114
Query: 63 SLTKEELYKMLNHEDLSKAAVLIYANKQD 91
++L++ + VL+ NK D
Sbjct: 115 ESLYQKLHEGHGKTRVPV--VLV-GNKAD 140
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 27.1 bits (61), Expect = 1.4
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D G A + ILV T R E + E++ ++ D+ ++
Sbjct: 56 TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG--DVESIPIM 113
Query: 85 IYANKQD 91
+ NK D
Sbjct: 114 LVGNKCD 120
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 27.2 bits (61), Expect = 1.4
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVL 84
D G A + ILV T + E + + + ++ + V+
Sbjct: 61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVM 118
Query: 85 IYANKQD 91
+ NK D
Sbjct: 119 LVGNKCD 125
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 26.9 bits (60), Expect = 1.7
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 9 PTIGSN---VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
PT+ N V + + +WD GQ+ Y +++ V+L +R
Sbjct: 54 PTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNI 113
Query: 66 KEELYKMLNHEDLSKAAVLIYANKQDI-KNSMSPV 99
+ + H + A ++ K D+ K+ V
Sbjct: 114 STKWEPEIKH-YIDTAKTVLVGLKVDLRKDGSDDV 147
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 26.8 bits (59), Expect = 1.9
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 51 ILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88
++ +D+T ++R T +EL + V I A+
Sbjct: 91 VIALDATLQQRPKETLDELVSYIRTHA---PNVEIMAD 125
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 26.4 bits (58), Expect = 3.2
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 28 WDLGGQQSLRAAWSTYYTNTEFVILVIDS 56
WD+ + A++ + I +ID+
Sbjct: 127 WDMNKITNNGASYDDLPKHANTKIAIIDT 155
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 25.9 bits (57), Expect = 3.6
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 11/116 (9%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K ++D GQ+ Y T+ ++ + KEE L
Sbjct: 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPN 122
Query: 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ----------WHIQSCCALTGE 126
L+ + D+++ + N + I +Q C ALT +
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQK 178
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil,
family 84 glycoside hydrolase, carbohydrate binding
module; 2.10A {Clostridium perfringens} PDB: 2cbj_A*
2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A*
2ydr_A* 2ydq_A*
Length = 594
Score = 25.6 bits (55), Expect = 6.4
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK 112
T ++ + +K IYA K D + E ++ +++
Sbjct: 160 GTPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPYPESEMQRMQE 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.382
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,863,805
Number of extensions: 94524
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 113
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)