RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6566
(126 letters)
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 68.4 bits (166), Expect = 3e-16
Identities = 54/125 (43%), Positives = 84/125 (67%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
+ V T PT+G NVE V +KN+ F +WD+GGQ +R W YYT T+ +I V+D DR+R
Sbjct: 35 GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR 94
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
I ++EL++++N ++ A +LI+ANKQD+ ++M P EI L LT I+ + W++Q C
Sbjct: 95 IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 154
Query: 122 ALTGE 126
A +G+
Sbjct: 155 ATSGD 159
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 67.7 bits (164), Expect = 7e-16
Identities = 59/125 (47%), Positives = 83/125 (66%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
EVV T PTIG NVE + +KN+ +WDLGGQ S+R W YY +T VI V+DSTD++R
Sbjct: 40 GEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR 99
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
+S +EL+ ML E+L AA+L++ANKQD ++S E+S L+L +K + W I +
Sbjct: 100 MSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 159
Query: 122 ALTGE 126
A+ GE
Sbjct: 160 AIKGE 164
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 62.7 bits (151), Expect = 6e-14
Identities = 92/125 (73%), Positives = 109/125 (87%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
NEVVHTSPTIGSNVEE++ N F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRER
Sbjct: 38 NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 97
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
IS+T+EELYKML HEDL KA +LI+ANKQD+K M+ EIS L LTSIK QWHIQ+CC
Sbjct: 98 ISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 157
Query: 122 ALTGE 126
ALTGE
Sbjct: 158 ALTGE 162
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 61.6 bits (148), Expect = 1e-13
Identities = 59/125 (47%), Positives = 89/125 (71%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
E+V T PTIG NVE V +KNI F +WD+GGQ +R W Y+ NT+ +I V+DS DRER
Sbjct: 23 GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 82
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
++ +EEL +ML ++L A +L++ANKQD+ N+M+ EI++ L L S++ + W+IQ+ C
Sbjct: 83 VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 142
Query: 122 ALTGE 126
A +G+
Sbjct: 143 ATSGD 147
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 61.1 bits (147), Expect = 2e-13
Identities = 54/125 (43%), Positives = 80/125 (64%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
++ H +PT G N++ V + +WD+GGQ+ +R W +Y+ NT+ +I VIDS DR+R
Sbjct: 39 EDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR 98
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
T +EL ++L E LS VLI+ANKQD+ + EI+ L+L +I+ + W IQSC
Sbjct: 99 FEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCS 158
Query: 122 ALTGE 126
ALTGE
Sbjct: 159 ALTGE 163
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 58.2 bits (140), Expect = 5e-12
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST-------- 57
H T G + ++F M+D+GGQ+ R W + + +I V+ S+
Sbjct: 30 HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRE 89
Query: 58 --DRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLD 106
R+ + N+ L +V+++ NKQD+ S + D
Sbjct: 90 DNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIED 140
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 55.4 bits (132), Expect = 3e-11
Identities = 51/125 (40%), Positives = 79/125 (63%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
+V SPT+G N++ + + +WD+GGQ+SLR+ W Y+ +T+ +I V+DS DR+R
Sbjct: 25 EDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR 84
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
+ + EL +L E L+ A +LI+ANKQD+ ++S I L+L SI+ W IQ C
Sbjct: 85 MQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 144
Query: 122 ALTGE 126
A+TGE
Sbjct: 145 AVTGE 149
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 54.3 bits (129), Expect = 8e-11
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
+ + PT EE+ NI F +DLGG R W Y+ ++ ++D+ D ER
Sbjct: 23 DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER 82
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW------ 115
+ EL + N +L +I NK D N++S E+ + L L + Q
Sbjct: 83 FDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP 142
Query: 116 -HIQSCCALTGE 126
+ C +
Sbjct: 143 VEVFMCSVVMRN 154
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 50.8 bits (120), Expect = 2e-09
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 7/131 (5%)
Query: 2 NEVVHTSPTIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST 57
+ T +I + N ++ G + + ++ V+ V+DS
Sbjct: 23 GQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSA 82
Query: 58 DRER-ISLTKEELYKMLNHEDLSKAA--VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
+R + E LY++L K + +LI NKQDI + S I L+ +
Sbjct: 83 AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRV 142
Query: 115 WHIQSCCALTG 125
+ L
Sbjct: 143 TRSAAPSTLDS 153
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 48.9 bits (115), Expect = 9e-09
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
+ + PT+ EE+ + F +DLGG R W Y ++ ++D D ER
Sbjct: 36 DRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER 95
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL------------TS 109
+ +KEEL ++ E ++ +LI NK D ++S + + L
Sbjct: 96 LLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE 155
Query: 110 IKKQQWHIQSCCALTGE 126
+ + + C L +
Sbjct: 156 LNARPLEVFMCSVLKRQ 172
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 48.2 bits (114), Expect = 1e-08
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 6 HTSPTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
TIG + + ++ K + +WD GQ+ R + YY +ILV D TD
Sbjct: 30 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT 89
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
+ ++ +K +N +A +L+ NK D++ + + K+
Sbjct: 90 FT-NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGE----ALAKELGIPFIESS 144
Query: 122 ALTGE 126
A +
Sbjct: 145 AKNDD 149
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 48.3 bits (114), Expect = 1e-08
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 4/125 (3%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
V +WD GQ+ R +YY + VILV D T R+
Sbjct: 35 ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT 94
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
L ++ + + ++ NK D +N E+ L +K
Sbjct: 95 FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR----EVDRNEGLKFARKHSMLFIEAS 150
Query: 122 ALTGE 126
A T +
Sbjct: 151 AKTCD 155
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 48.3 bits (114), Expect = 2e-08
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Query: 6 HTSPTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
TIG + + E+ K + +WD GQ+ R S+YY + +I+V D TD+E
Sbjct: 34 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 93
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
+ K L ++ + + +L+ + +++ +
Sbjct: 94 FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK----EFADANKMPFLETS 149
Query: 122 ALTGE 126
AL
Sbjct: 150 ALDST 154
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 46.3 bits (109), Expect = 7e-08
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 4 VVHTSPTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
TIG + + E+ K I +WD GQ+ R + YY ++LV D T+
Sbjct: 32 NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE 91
Query: 60 ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQS 119
+ + + + H +++ E
Sbjct: 92 KSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE----KLALDYGIKFME 147
Query: 120 CCALTGE 126
A
Sbjct: 148 TSAKANI 154
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 46.4 bits (109), Expect = 1e-07
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
M + PT G + + KN+ F M D+GGQ+S R W + + ++ ++ S++ +
Sbjct: 22 MRIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD 81
Query: 61 ----------RISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92
R++ + ++N+ S +++++ NK D+
Sbjct: 82 QVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 123
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 43.7 bits (102), Expect = 5e-07
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 4/126 (3%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
+ + V +V + MWD GQ+ R+ YY + ++L+ D T++
Sbjct: 34 GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKA 93
Query: 61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
+ L ++ + A +L+ + E L K+
Sbjct: 94 SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL----AKEYGLPFMET 149
Query: 121 CALTGE 126
A TG
Sbjct: 150 SAKTGL 155
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 43.8 bits (102), Expect = 8e-07
Identities = 23/159 (14%), Positives = 54/159 (33%), Gaps = 33/159 (20%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
PT G +++ F M D+GGQ+S R W + N ++ ++ ++ +
Sbjct: 23 RIIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYD 82
Query: 61 RISL----------TKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE---------- 100
++ + +K ++ + ++V+++ NK+D+
Sbjct: 83 QVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 142
Query: 101 -------------ISNLLDLTSIKKQQWHIQSCCALTGE 126
+ +DL + + CA E
Sbjct: 143 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE 181
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 43.5 bits (101), Expect = 9e-07
Identities = 31/121 (25%), Positives = 64/121 (52%)
Query: 6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
PT+G N+ ++ N+ +WD+GGQ R+ W Y ++ ++D+ D+E+I +
Sbjct: 30 DMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS 89
Query: 66 KEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125
K EL+ +L+ L VL+ NK+D+ ++ E+ ++L++I+ ++ S
Sbjct: 90 KNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK 149
Query: 126 E 126
+
Sbjct: 150 D 150
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 42.9 bits (100), Expect = 1e-06
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
Query: 18 VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77
K I +WD GQ+ R + YY IL+ D T+ E + ++ +
Sbjct: 49 RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYS 107
Query: 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
A VL+ NK D+++ + A
Sbjct: 108 WDNAQVLLVGNKCDMEDERVVSSERG---RQLADHLGFEFFEASAKDNI 153
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 42.8 bits (99), Expect = 1e-06
Identities = 60/125 (48%), Positives = 85/125 (68%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
EVV T PTIG NVE V +KN+ F +WDLGG S+R W YY+NT+ VI V+DS DR+R
Sbjct: 28 GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR 87
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
I ++K EL ML E+L KA ++++ANKQD++ +M+ E++N L L ++K ++W I
Sbjct: 88 IGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS 147
Query: 122 ALTGE 126
A G
Sbjct: 148 ATKGT 152
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 42.2 bits (98), Expect = 2e-06
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 3/113 (2%)
Query: 14 NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73
N +H +WD GQ+ R+ + ++ + +L+ D T ++ + + ++
Sbjct: 55 NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 114
Query: 74 NHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+ +++ NK D+ + E K A TG+
Sbjct: 115 ANAYCENPDIVLIGNKADLPDQREVNERQA---RELADKYGIPYFETSAATGQ 164
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 42.1 bits (98), Expect = 3e-06
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 4/125 (3%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
+ E+ + + +WD GQ+ R+ +YY + +IL D T E
Sbjct: 33 GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES 92
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
E L ++ + VL+ + + + + Q +
Sbjct: 93 FRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE----EFSEAQDMYYLETS 148
Query: 122 ALTGE 126
A +
Sbjct: 149 AKESD 153
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 41.4 bits (96), Expect = 4e-06
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 4/125 (3%)
Query: 2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
+ GS + V K + +WD GQ+ R+ +YY +LV D T RE
Sbjct: 33 DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 92
Query: 62 ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
+ L + +L K + ++ ++ +
Sbjct: 93 YNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETS 148
Query: 122 ALTGE 126
ALTGE
Sbjct: 149 ALTGE 153
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 41.2 bits (95), Expect = 6e-06
Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 20 WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79
+ F +WD GQ+ + YY N + ++V D T + + + ++ + +
Sbjct: 49 EHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASK 107
Query: 80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+ + NK D+ +++ +++ A TGE
Sbjct: 108 DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 37.2 bits (85), Expect = 1e-04
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
G +K++HF M+D+GGQ+S R W + +I + +D + +
Sbjct: 26 HEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 85
Query: 67 ----------EELYKMLNHEDLSKAAVLIYANKQDIKN 94
+ + N++ + +++++ NK+D+
Sbjct: 86 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 123
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 36.4 bits (83), Expect = 3e-04
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
K I +WD GQ+ R S YY +LV D + L ++ +H D S
Sbjct: 51 KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SN 109
Query: 81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+++ NK D+++ + +K AL
Sbjct: 110 IVIMLVGNKSDLRHLRAVPTD---EARAFAEKNNLSFIETSALDST 152
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 33.8 bits (76), Expect = 0.002
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 4/109 (3%)
Query: 18 VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77
+ + F +WD GQ+ + YY + I+V D T+ E + K + ++
Sbjct: 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+ L + + + + + A T
Sbjct: 110 PNIVIALS----GNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 31.1 bits (69), Expect = 0.021
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA 81
I +WD GQ+ R+ +Y ++ ++V D T+ T + + + S
Sbjct: 48 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDV 106
Query: 82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
+++ NK D+ + K+ A G
Sbjct: 107 IIMLVGNKTDLADKRQVSIEEG---ERKAKELNVMFIETSAKAGY 148
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 25.0 bits (53), Expect = 2.5
Identities = 12/71 (16%), Positives = 29/71 (40%)
Query: 26 IMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI 85
+ G ++ ++ YY N V+ V D T+ + + H + ++
Sbjct: 55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL 114
Query: 86 YANKQDIKNSM 96
NK D+++++
Sbjct: 115 VGNKCDLRSAI 125
>d1w7ca3 d.17.2.1 (A:170-315) Lysyl oxidase PplO, domains 1 and 2
{Yeast (Pichia pastoris) [TaxId: 4922]}
Length = 146
Score = 24.8 bits (54), Expect = 2.9
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQ 118
N ++ ++ P D+T QW +
Sbjct: 64 CNINTENDAENLVPTGFFFKFDMTGRDVSQWKML 97
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 24.2 bits (52), Expect = 5.7
Identities = 8/58 (13%), Positives = 16/58 (27%)
Query: 1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD 58
+ TI + + + D G + T + + IL+I
Sbjct: 62 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.382
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,593
Number of extensions: 18098
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 32
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.9 bits)