BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6569
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|E0VI98|RU1C_PEDHC U1 small nuclear ribonucleoprotein C OS=Pediculus humanus subsp.
corporis GN=PHUM222080 PE=3 SV=1
Length = 173
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/81 (90%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60
Query: 61 KIANNPFGNKGGAAIPPPSNL 81
KIA NPF K GAAIPPP+N+
Sbjct: 61 KIA-NPFAPKPGAAIPPPANM 80
>sp|E3X5D6|RU1C_ANODA U1 small nuclear ribonucleoprotein C OS=Anopheles darlingi
GN=AND_14095 PE=3 SV=1
Length = 151
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 90/121 (74%), Gaps = 14/121 (11%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAAYKAG
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAYKAG 60
Query: 61 KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM 120
KIA NPF A PP N+S PPP M P PG++PG MP G ++MG
Sbjct: 61 KIAQNPF-----TAGPPKPNISI--------PPPTMNMPPRPGIIPG-MPAGAPPLLMGP 106
Query: 121 N 121
N
Sbjct: 107 N 107
>sp|Q7PXU6|RU1C_ANOGA U1 small nuclear ribonucleoprotein C OS=Anopheles gambiae
GN=AGAP001584 PE=2 SV=2
Length = 152
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 90/121 (74%), Gaps = 14/121 (11%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAAYKAG
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAYKAG 60
Query: 61 KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM 120
KIA NPF A PP N+S PPP M P PGM+PG MP G ++MG
Sbjct: 61 KIAPNPF-----TAGPPKPNISI--------PPPTMNMPPRPGMIPG-MPAGAPPLLMGP 106
Query: 121 N 121
N
Sbjct: 107 N 107
>sp|Q16IW3|RU1C_AEDAE U1 small nuclear ribonucleoprotein C OS=Aedes aegypti GN=AAEL013527
PE=3 SV=1
Length = 154
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 83/108 (76%), Gaps = 13/108 (12%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60
Query: 61 KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGM 108
KIA NPF +A PP N++ PPP M PGM+PGM
Sbjct: 61 KIAQNPF-----SAGPPKPNVAI--------PPPSMGMPARPGMIPGM 95
>sp|Q298E0|RU1C_DROPS U1 small nuclear ribonucleoprotein C OS=Drosophila pseudoobscura
pseudoobscura GN=snRNP-U1-C PE=3 SV=1
Length = 146
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 77/91 (84%), Gaps = 2/91 (2%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDTYLTHDSPSVRKTHC GRKH+DNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60
Query: 61 KIANNPFGNKGGAAIPPPSNLSSLMPPRQVG 91
KI NNPF +A P PS +S +PP +G
Sbjct: 61 KITNNPFAGGPSSAPPKPSGVS--IPPPNMG 89
>sp|B7Q2M2|RU1C_IXOSC U1 small nuclear ribonucleoprotein C OS=Ixodes scapularis
GN=ISCW020627 PE=3 SV=1
Length = 150
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 72/81 (88%), Gaps = 2/81 (2%)
Query: 3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKI 62
+YYCDYCDTYLTHDSPSVRKTHC GRKHK+NVKFYYQKWMEEQAQNLIDATTAA+KAGKI
Sbjct: 11 RYYCDYCDTYLTHDSPSVRKTHCNGRKHKENVKFYYQKWMEEQAQNLIDATTAAFKAGKI 70
Query: 63 ANNPFGNK--GGAAIPPPSNL 81
++ + NK GA IPPP+ L
Sbjct: 71 QSSQYQNKPISGAMIPPPAAL 91
>sp|C3Z1P5|RU1C_BRAFL U1 small nuclear ribonucleoprotein C OS=Branchiostoma floridae
GN=BRAFLDRAFT_69314 PE=3 SV=1
Length = 221
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 73/90 (81%), Gaps = 7/90 (7%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKY+CDYCDTYLTHDSPSVRKTHC GRKHK+NV+ YYQKWMEEQAQ LID TTAA++AG
Sbjct: 1 MPKYFCDYCDTYLTHDSPSVRKTHCNGRKHKENVRVYYQKWMEEQAQQLIDQTTAAFQAG 60
Query: 61 KIANNPF-------GNKGGAAIPPPSNLSS 83
KI NNPF GN+ GA + PP+ L +
Sbjct: 61 KIPNNPFPNAAGQVGNEPGAKVLPPAILQA 90
>sp|Q9VE17|RU1C_DROME U1 small nuclear ribonucleoprotein C OS=Drosophila melanogaster
GN=snRNP-U1-C PE=1 SV=1
Length = 145
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDTYLTHDSPSVRKTHC GRKH+DNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60
Query: 61 KIANN 65
KI NN
Sbjct: 61 KITNN 65
>sp|B0JYS7|RU1C_XENTR U1 small nuclear ribonucleoprotein C OS=Xenopus tropicalis
GN=snrpc PE=2 SV=1
Length = 159
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|Q03369|RU1C_XENLA U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrpc
PE=2 SV=1
Length = 159
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|F6TFD9|RU1C_MACMU U1 small nuclear ribonucleoprotein C OS=Macaca mulatta GN=SNRPC
PE=3 SV=1
Length = 159
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|P09234|RU1C_HUMAN U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC
PE=1 SV=1
Length = 159
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|E2RGI3|RU1C_CANFA U1 small nuclear ribonucleoprotein C OS=Canis familiaris GN=SNRPC
PE=3 SV=1
Length = 159
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|Q32PA0|RU1C_BOVIN U1 small nuclear ribonucleoprotein C OS=Bos taurus GN=SNRPC PE=2
SV=2
Length = 159
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|Q8JGS0|RU1C_DANRE U1 small nuclear ribonucleoprotein C OS=Danio rerio GN=snrpc PE=2
SV=1
Length = 159
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|D3ZCL3|RU1C_RAT U1 small nuclear ribonucleoprotein C OS=Rattus norvegicus
GN=Snrpc PE=3 SV=1
Length = 159
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|Q62241|RU1C_MOUSE U1 small nuclear ribonucleoprotein C OS=Mus musculus GN=Snrpc
PE=2 SV=1
Length = 159
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|E1C6F0|RU1C_CHICK U1 small nuclear ribonucleoprotein C OS=Gallus gallus GN=SNRPC
PE=3 SV=1
Length = 159
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
KI
Sbjct: 61 KI 62
>sp|F7ARS3|RU1C_MONDO U1 small nuclear ribonucleoprotein C OS=Monodelphis domestica
GN=SNRPC PE=3 SV=1
Length = 138
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NV+ YYQKWMEEQAQ+LID TT A++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVRDYYQKWMEEQAQSLIDKTTTAFQQG 60
Query: 61 KIANNPFG 68
+I N F
Sbjct: 61 RIPPNLFS 68
>sp|Q1RLC9|RU1C_CIOIN U1 small nuclear ribonucleoprotein C OS=Ciona intestinalis PE=2
SV=1
Length = 122
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 56/64 (87%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKY+CDYCDTYLTHDSPSVRKTHC GRKHKDNVK YYQ WMEEQAQ LID TT A++ G
Sbjct: 1 MPKYFCDYCDTYLTHDSPSVRKTHCSGRKHKDNVKMYYQTWMEEQAQELIDKTTQAFQKG 60
Query: 61 KIAN 64
K+ N
Sbjct: 61 KMGN 64
>sp|A7SEP9|RU1C_NEMVE U1 small nuclear ribonucleoprotein C OS=Nematostella vectensis
GN=v1g244745 PE=3 SV=1
Length = 138
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 55/59 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA 59
MPKYYCDYCDT+LTHDSPSVRKTH GRKHK+NV+FYYQKWMEEQAQ LID TTAA+++
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQTTAAFQS 59
>sp|A8XW44|RU1C_CAEBR U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae
GN=CBG19656 PE=3 SV=1
Length = 142
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDT+LTHDSPSVRKTH GRKHKDNV+ +YQKWME+QAQ L+D T A+
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATN 60
Query: 61 KIANN-PFGNKGGAAIPP 77
++ P G A +PP
Sbjct: 61 RMHGAVPRTTMGMAPVPP 78
>sp|P90815|RU1C_CAEEL U1 small nuclear ribonucleoprotein C OS=Caenorhabditis elegans
GN=F08B4.7 PE=3 SV=1
Length = 142
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDT+LTHDSPSVRKTH GRKHKDNV+ +YQKWME+QAQ L+D T A+
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATN 60
Query: 61 KIANN-PFGNKGGAAIPP 77
++ P G A +PP
Sbjct: 61 RMQGAVPRTTMGMAPVPP 78
>sp|C5XYW4|RU1C2_SORBI U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor
GN=Sb04g028260 PE=3 SV=1
Length = 228
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLID 51
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q+LID
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLID 51
>sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C OS=Vitis vinifera
GN=VIT_07s0104g01170 PE=3 SV=1
Length = 213
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 50/72 (69%), Gaps = 7/72 (9%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLID-------AT 53
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q+LID
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
Query: 54 TAAYKAGKIANN 65
TAA++ A N
Sbjct: 61 TAAFQQVGAAYN 72
>sp|C5XZK6|RU1C1_SORBI U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor
GN=Sb04g009880 PE=3 SV=1
Length = 231
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLID 51
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q+LID
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLID 51
>sp|Q56XE4|RU1C_ARATH U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana
GN=At4g03120 PE=1 SV=1
Length = 207
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLID 51
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q+LID
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLID 51
>sp|D5GDH4|RU1C_TUBMM U1 small nuclear ribonucleoprotein C OS=Tuber melanosporum
(strain Mel28) GN=GSTUM_00001021001 PE=3 SV=1
Length = 220
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA 59
MPK++CDYCD YLTHDS SVRK H GR H NV YYQ+ E+AQ++ID+ T++Y A
Sbjct: 1 MPKFFCDYCDVYLTHDSISVRKAHNSGRNHLRNVVDYYQQIGHEKAQSVIDSITSSYAA 59
>sp|Q54YA5|RU1C_DICDI U1 small nuclear ribonucleoprotein C OS=Dictyostelium discoideum
GN=snrpC PE=3 SV=1
Length = 174
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 45/61 (73%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCD YLTHDSPSVRK+H G++HK V+ +YQ++ E Q+LI+A Y+
Sbjct: 1 MPKYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLFYQQFEAEFTQSLIEARLKEYEES 60
Query: 61 K 61
K
Sbjct: 61 K 61
>sp|Q5BBX9|RU1C_EMENI U1 small nuclear ribonucleoprotein C OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN1951 PE=3 SV=2
Length = 236
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA- 59
MPK++CDYCD YLTHDS SVRK H GR H NV YYQ+ +E+AQ++ID+ T++Y A
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNSGRNHLRNVVEYYQQIGQEKAQSVIDSITSSYAAE 60
Query: 60 GKIANNP 66
G+ NP
Sbjct: 61 GQAVPNP 67
>sp|Q4WQM6|RU1C_ASPFU U1 small nuclear ribonucleoprotein C OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=AFUA_4G13350 PE=3 SV=3
Length = 216
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA 59
MPK++CDYCD YLTHDS SVRK H GR H NV YYQ+ +E+AQ++ID+ T++Y A
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNAGRNHLRNVVEYYQQIGQEKAQSVIDSITSSYAA 59
>sp|Q1K7T5|RU1C_NEUCR U1 small nuclear ribonucleoprotein C OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=NCU01341 PE=3 SV=1
Length = 216
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA- 59
MPK++CDYCD YLTHDS SVRK H GR H NV YYQ+ E+AQ++ID+ T++Y A
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNSGRNHLRNVVDYYQQIGHEKAQSVIDSITSSYAAE 60
Query: 60 GKIANNP 66
G+ NP
Sbjct: 61 GQAHANP 67
>sp|C7YRT4|RU1C_NECH7 U1 small nuclear ribonucleoprotein C OS=Nectria haematococca
(strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI)
GN=NECHADRAFT_80502 PE=3 SV=1
Length = 204
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA- 59
MPK++CDYCD YLTHDS SVRK H GR H NV YYQ+ E+AQ++ID+ T++Y A
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNSGRNHLRNVVDYYQQIGHEKAQSVIDSITSSYAAE 60
Query: 60 GKIANNP 66
G+ NP
Sbjct: 61 GQAHANP 67
>sp|A8NYM5|RU1C_COPC7 U1 small nuclear ribonucleoprotein C OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_01380 PE=3 SV=1
Length = 209
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA 59
MPK+YCDYCD +LTHDS SVRK H GR H NV+ YY ++AQ++ID T+A+++
Sbjct: 1 MPKHYCDYCDVFLTHDSASVRKAHNSGRNHLANVRDYYASLGHDKAQSIIDQITSAFES 59
>sp|E3LAN7|RU1C1_PUCGT U1 small nuclear ribonucleoprotein C-1 OS=Puccinia graminis f.
sp. tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_19611 PE=3 SV=1
Length = 190
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
M KYYCDYCD +L +SPSVRK H GR H NV+ YY ++AQ+ ID T ++ G
Sbjct: 1 MGKYYCDYCDVFLVSESPSVRKAHNSGRNHLTNVRDYYSSLGHDKAQSYIDEITRMFETG 60
Query: 61 KIANNPFGNKGGAAIPP 77
N N+G PP
Sbjct: 61 --GGNSTSNRGPGGNPP 75
>sp|E3KIY6|RU1C2_PUCGT U1 small nuclear ribonucleoprotein C-2 OS=Puccinia graminis f.
sp. tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_10639 PE=3 SV=1
Length = 188
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
M KYYCDYCD +L +SPSVRK H GR H NV+ YY ++AQ+ ID T ++ G
Sbjct: 1 MGKYYCDYCDVFLVSESPSVRKAHNSGRNHLTNVRDYYSSLGHDKAQSYIDEITRMFETG 60
Query: 61 KIANNPFGNKGGAAIPP 77
N N+G PP
Sbjct: 61 --GGNSTSNRGPGGNPP 75
>sp|A7EYK3|RU1C_SCLS1 U1 small nuclear ribonucleoprotein C OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_10419 PE=3
SV=1
Length = 181
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 3/67 (4%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA- 59
MPK CDYCD YLTHDS SVRK H GR H NV YYQ+ E+AQ++ID+ T++Y A
Sbjct: 1 MPK--CDYCDVYLTHDSMSVRKAHNSGRNHLRNVVDYYQQIGHEKAQSVIDSITSSYAAE 58
Query: 60 GKIANNP 66
G+ ++NP
Sbjct: 59 GQSSSNP 65
>sp|C0NN85|RU1C_AJECG U1 small nuclear ribonucleoprotein C OS=Ajellomyces capsulata
(strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)
GN=HCBG_04212 PE=3 SV=1
Length = 242
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA-GK 61
Y DYCD YLTHDS SVRK H GR H NV YYQ+ E+AQ++ID+ T +Y A G+
Sbjct: 2 NYLGDYCDVYLTHDSMSVRKAHNSGRNHLRNVVEYYQEIGHEKAQSVIDSITNSYAAEGQ 61
Query: 62 IANNP 66
++NP
Sbjct: 62 ASSNP 66
>sp|Q5KC16|RU1C_CRYNJ U1 small nuclear ribonucleoprotein C OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC
MYA-565) GN=CNI00630 PE=3 SV=1
Length = 220
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
M KYYCDYCD YLTHDS + RK H GR H NV+ Y+ QAQ+LID +++G
Sbjct: 1 MGKYYCDYCDIYLTHDSMNARKAHNSGRNHVANVRDYFAGLGGNQAQSLIDQIIQQHESG 60
>sp|Q9P794|RU1C_SCHPO U1 small nuclear ribonucleoprotein C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usp103 PE=1 SV=1
Length = 182
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 60/121 (49%), Gaps = 20/121 (16%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLID--ATTAAYK 58
MP+Y CDYC +LTHDS SVRK H GR H NV+ YY K +E+AQ ++ A++ K
Sbjct: 1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLK 60
Query: 59 AGKIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPG---MMPPGMNM 115
G N A PP N+ +L P PPP ++ M P GMN
Sbjct: 61 KG---NGSLDLPYAYAFPPKYNVFNLGCP------------PPPYIVSANTYMAPKGMNA 105
Query: 116 M 116
M
Sbjct: 106 M 106
>sp|Q4P2Q5|RU1C_USTMA U1 small nuclear ribonucleoprotein C OS=Ustilago maydis (strain
521 / FGSC 9021) GN=UM05608 PE=3 SV=1
Length = 221
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 36/62 (58%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
M K+YCDYCD +LTHDS SVRK H GR H NV+ YYQ E Q ++D Y
Sbjct: 1 MGKHYCDYCDVFLTHDSVSVRKAHNSGRNHLQNVREYYQTLEPECIQQVLDTLAQEYDLR 60
Query: 61 KI 62
I
Sbjct: 61 GI 62
>sp|D0NHA2|RU1C_PHYIT U1 small nuclear ribonucleoprotein C OS=Phytophthora infestans
(strain T30-4) GN=PITG_10871 PE=3 SV=1
Length = 138
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQ 45
MP+YYCDYCDTYLTHDS + RK H +G KH++NVK YY++++ Q
Sbjct: 1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFLAGQ 45
>sp|D3B3B7|RU1C_POLPA U1 small nuclear ribonucleoprotein C OS=Polysphondylium pallidum
GN=snrpC PE=3 SV=1
Length = 141
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 4/51 (7%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQ----KWMEEQAQ 47
MPKYYC+YCD YLTHDSPSVRK+H G+ H+ V YY+ +W + Q Q
Sbjct: 1 MPKYYCEYCDKYLTHDSPSVRKSHTIGKVHQQAVTLYYKQFEAEWFKSQMQ 51
>sp|Q4UJ14|RU1C_THEAN U1 small nuclear ribonucleoprotein C OS=Theileria annulata
GN=TA09515 PE=3 SV=1
Length = 151
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQ 45
MPK+YC+YC YLTH SP+ RK H QGRKH Y+Q+ + EQ
Sbjct: 1 MPKFYCEYCSIYLTHSSPAGRKQHSQGRKHISAKVEYFQRLVREQ 45
>sp|Q4N6K2|RU1C_THEPA U1 small nuclear ribonucleoprotein C OS=Theileria parva
GN=TP01_1168 PE=3 SV=1
Length = 141
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQ 45
MPK+YC+YC YLTH SP+ RK H QGRKH Y+Q+ + EQ
Sbjct: 1 MPKFYCEYCSIYLTHSSPAGRKQHSQGRKHISAKVEYFQRLVREQ 45
>sp|A5JZQ2|RU1C_PLAVS U1 small nuclear ribonucleoprotein C OS=Plasmodium vivax (strain
Salvador I) GN=PVX_123135 PE=3 SV=1
Length = 240
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQA---QNLIDATTAAY 57
MPKYYC+YCD YLTH SP R+ H QGRKH Y+Q + E+ QN + +
Sbjct: 1 MPKYYCEYCDIYLTHSSPVGRRQHIQGRKHISAKIEYFQNLLREEGITPQNFL-----GF 55
Query: 58 KAGKIANNPFGN 69
+ NN GN
Sbjct: 56 LGNRAFNNMLGN 67
>sp|C4YIU5|RU1C_CANAW U1 small nuclear ribonucleoprotein C OS=Candida albicans (strain
WO-1) GN=YHC1 PE=3 SV=1
Length = 150
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 30/37 (81%), Gaps = 3/37 (8%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFY 37
MPKYYCDYC +YLTHD+ SVRK+H QGR H +KFY
Sbjct: 1 MPKYYCDYCKSYLTHDTMSVRKSHLQGRNH---IKFY 34
>sp|Q59P44|RU1C_CANAL U1 small nuclear ribonucleoprotein C OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=YHC1 PE=3 SV=1
Length = 150
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 30/37 (81%), Gaps = 3/37 (8%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFY 37
MPKYYCDYC +YLTHD+ SVRK+H QGR H +KFY
Sbjct: 1 MPKYYCDYCKSYLTHDTMSVRKSHLQGRNH---IKFY 34
>sp|B3LC82|RU1C_PLAKH U1 small nuclear ribonucleoprotein C OS=Plasmodium knowlesi
(strain H) GN=PKH_142590 PE=3 SV=1
Length = 228
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQA---QNLI 50
MPKYYC+YCD YLTH SP R+ H QGRKH Y+Q + E+ QN +
Sbjct: 1 MPKYYCEYCDIYLTHSSPVGRRQHVQGRKHISAKIEYFQNLLREEGITPQNFL 53
>sp|Q8IAW3|RU1C_PLAF7 U1 small nuclear ribonucleoprotein C OS=Plasmodium falciparum
(isolate 3D7) GN=PF08_0084 PE=3 SV=1
Length = 235
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQA---QNLIDATTAAY 57
MPKYYC+YCD YLTH SP R+ H GRKH Y+Q + E+ QN + +
Sbjct: 1 MPKYYCEYCDIYLTHSSPVGRRQHIHGRKHISAKIEYFQNLLREEGITPQNFL-----GF 55
Query: 58 KAGKIANNPFGN 69
+ NNP GN
Sbjct: 56 LNNRNINNPLGN 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,059,265
Number of Sequences: 539616
Number of extensions: 3781044
Number of successful extensions: 36817
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 824
Number of HSP's that attempted gapping in prelim test: 18380
Number of HSP's gapped (non-prelim): 11009
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)