Your job contains 1 sequence.
>psy6569
MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG
KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM
NPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQRK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6569
(164 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0261792 - symbol:snRNP-U1-C "small ribonucleoprote... 371 3.6e-34 1
UNIPROTKB|E1C6F0 - symbol:SNRPC "U1 small nuclear ribonuc... 322 5.6e-29 1
UNIPROTKB|Q32PA0 - symbol:SNRPC "U1 small nuclear ribonuc... 317 1.9e-28 1
UNIPROTKB|E2RGI3 - symbol:SNRPC "U1 small nuclear ribonuc... 317 1.9e-28 1
UNIPROTKB|K9J6N9 - symbol:K9J6N9 "Uncharacterized protein... 317 1.9e-28 1
UNIPROTKB|P09234 - symbol:SNRPC "U1 small nuclear ribonuc... 317 1.9e-28 1
UNIPROTKB|F1RZ16 - symbol:SNRPC "Uncharacterized protein"... 317 1.9e-28 1
MGI|MGI:109489 - symbol:Snrpc "U1 small nuclear ribonucle... 315 3.1e-28 1
RGD|1306065 - symbol:Snrpc "small nuclear ribonucleoprote... 315 3.1e-28 1
RGD|1588146 - symbol:LOC682020 "similar to U1 small nucle... 315 3.1e-28 1
RGD|1596424 - symbol:LOC685273 "similar to U1 small nucle... 315 3.1e-28 1
RGD|2322177 - symbol:LOC100363879 "small nuclear ribonucl... 315 3.1e-28 1
UNIPROTKB|J9PAP5 - symbol:LOC100856126 "Uncharacterized p... 313 5.0e-28 1
UNIPROTKB|J9P5W0 - symbol:SNRPC "U1 small nuclear ribonuc... 311 8.2e-28 1
ZFIN|ZDB-GENE-020419-26 - symbol:snrpc "small nuclear rib... 302 7.3e-27 1
UNIPROTKB|E2QWB9 - symbol:E2QWB9 "Uncharacterized protein... 284 5.9e-25 1
WB|WBGene00017238 - symbol:F08B4.7 species:6239 "Caenorha... 265 6.1e-23 1
TAIR|locus:2125432 - symbol:AT4G03120 species:3702 "Arabi... 215 1.2e-17 1
ASPGD|ASPL0000051381 - symbol:AN1951 species:162425 "Emer... 203 2.3e-16 1
DICTYBASE|DDB_G0278335 - symbol:snrpC "putative U1 small ... 198 7.7e-16 1
UNIPROTKB|G4MZB1 - symbol:MGG_08209 "Uncharacterized prot... 198 7.7e-16 1
POMBASE|SPBP35G2.09 - symbol:usp103 "U1 snRNP-associated ... 160 8.2e-12 1
CGD|CAL0005358 - symbol:orf19.5492 species:5476 "Candida ... 151 7.4e-11 1
SGD|S000004289 - symbol:YHC1 "Component of the U1 snRNP c... 119 3.7e-07 1
POMBASE|SPBC18H10.07 - symbol:SPBC18H10.07 "WW domain-bin... 95 0.00018 1
UNIPROTKB|F1PCW3 - symbol:WBP4 "Uncharacterized protein" ... 95 0.00046 1
UNIPROTKB|O75554 - symbol:WBP4 "WW domain-binding protein... 95 0.00047 1
RGD|620033 - symbol:Wbp4 "WW domain binding protein 4" sp... 92 0.00098 1
MGI|MGI:109568 - symbol:Wbp4 "WW domain binding protein 4... 92 0.00099 1
>FB|FBgn0261792 [details] [associations]
symbol:snRNP-U1-C "small ribonucleoprotein particle U1
subunit C" species:7227 "Drosophila melanogaster" [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005692 "U11 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR013085
InterPro:IPR017340 Pfam:PF06220 PIRSF:PIRSF037969 PROSITE:PS50171
SMART:SM00451 EMBL:AE014297 GO:GO:0007052 GO:GO:0022008
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0000398
GO:GO:0000381 GO:GO:0005685 GeneTree:ENSGT00670000097795
eggNOG:COG5136 KO:K11095 HAMAP:MF_03153 OMA:MLPTPPM EMBL:BT003460
RefSeq:NP_650767.1 UniGene:Dm.6730 ProteinModelPortal:Q9VE17
SMR:Q9VE17 IntAct:Q9VE17 MINT:MINT-294656 STRING:Q9VE17
PaxDb:Q9VE17 PRIDE:Q9VE17 EnsemblMetazoa:FBtr0083720 GeneID:42274
KEGG:dme:Dmel_CG5454 UCSC:CG5454-RA CTD:42274 FlyBase:FBgn0261792
InParanoid:Q9VE17 PhylomeDB:Q9VE17 GenomeRNAi:42274 NextBio:828005
Bgee:Q9VE17 Uniprot:Q9VE17
Length = 145
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 66/74 (89%), Positives = 69/74 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDTYLTHDSPSVRKTHC GRKH+DNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60
Query: 61 KIANNPF-GNKGGA 73
KI NNPF G GGA
Sbjct: 61 KITNNPFAGGPGGA 74
>UNIPROTKB|E1C6F0 [details] [associations]
symbol:SNRPC "U1 small nuclear ribonucleoprotein C"
species:9031 "Gallus gallus" [GO:0000387 "spliceosomal snRNP
assembly" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 InterPro:IPR017340 Pfam:PF06220
PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451 GO:GO:0046872
GO:GO:0008270 GO:GO:0003727 GO:GO:0015030 GO:GO:0000387
GO:GO:0005685 GeneTree:ENSGT00670000097795 KO:K11095 HAMAP:MF_03153
CTD:6631 OMA:MLPTPPM EMBL:AADN02045039 IPI:IPI00601436
RefSeq:XP_418026.2 UniGene:Gga.18175 Ensembl:ENSGALT00000004378
GeneID:419901 KEGG:gga:419901 NextBio:20822891 Uniprot:E1C6F0
Length = 159
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 59/77 (76%), Positives = 64/77 (83%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPFGNK--GGAAI 75
KI PF GGA I
Sbjct: 61 KIPPTPFSAPPPGGAMI 77
>UNIPROTKB|Q32PA0 [details] [associations]
symbol:SNRPC "U1 small nuclear ribonucleoprotein C"
species:9913 "Bos taurus" [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0000387 "spliceosomal snRNP assembly"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 InterPro:IPR017340 Pfam:PF06220
PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451 GO:GO:0046872
GO:GO:0008270 GO:GO:0003727 GO:GO:0015030 GO:GO:0000387
GO:GO:0005685 GeneTree:ENSGT00670000097795 eggNOG:COG5136
HOGENOM:HOG000238970 KO:K11095 HAMAP:MF_03153 EMBL:AAFC03038069
EMBL:BC108201 IPI:IPI00709850 RefSeq:NP_001069802.1
UniGene:Bt.20004 ProteinModelPortal:Q32PA0 SMR:Q32PA0 STRING:Q32PA0
PRIDE:Q32PA0 Ensembl:ENSBTAT00000034155 GeneID:614553
KEGG:bta:614553 CTD:6631 InParanoid:Q32PA0 OMA:MLPTPPM
OrthoDB:EOG4933KH NextBio:20899159 Uniprot:Q32PA0
Length = 159
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPTPF 67
>UNIPROTKB|E2RGI3 [details] [associations]
symbol:SNRPC "U1 small nuclear ribonucleoprotein C"
species:9615 "Canis lupus familiaris" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 InterPro:IPR017340
Pfam:PF06220 PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0005685 KO:K11095
HAMAP:MF_03153 CTD:6631 RefSeq:XP_532115.3
ProteinModelPortal:E2RGI3 SMR:E2RGI3 PRIDE:E2RGI3 GeneID:608109
KEGG:cfa:608109 NextBio:20893783 Uniprot:E2RGI3
Length = 159
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPTPF 67
>UNIPROTKB|K9J6N9 [details] [associations]
symbol:K9J6N9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171 SMART:SM00451
GeneTree:ENSGT00670000097795 EMBL:AAEX03008258
Ensembl:ENSCAFT00000001913 Uniprot:K9J6N9
Length = 127
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 10 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 69
Query: 61 KIANNPF 67
KI PF
Sbjct: 70 KIPPTPF 76
>UNIPROTKB|P09234 [details] [associations]
symbol:SNRPC "U1 small nuclear ribonucleoprotein C"
species:9606 "Homo sapiens" [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0042803
"protein homodimerization activity" evidence=IPI] [GO:0030619 "U1
snRNA binding" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IDA] [GO:0000387 "spliceosomal snRNP assembly"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0015030 "Cajal body" evidence=IDA] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 InterPro:IPR017340
Pfam:PF06220 PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451
GO:GO:0046872 GO:GO:0008270 GO:GO:0003727 GO:GO:0015030
GO:GO:0000387 GO:GO:0005685 PDB:3CW1 PDBsum:3CW1 eggNOG:COG5136
HOGENOM:HOG000238970 KO:K11095 HAMAP:MF_03153 CTD:6631
OrthoDB:EOG4933KH EMBL:X12517 EMBL:AL139100 EMBL:M18465
IPI:IPI00013396 IPI:IPI00641788 PIR:S01387 RefSeq:NP_003084.1
UniGene:Hs.1063 PDB:2VRD PDBsum:2VRD ProteinModelPortal:P09234
SMR:P09234 DIP:DIP-34235N IntAct:P09234 MINT:MINT-1366350
STRING:P09234 PhosphoSite:P09234 DMDM:134093 PaxDb:P09234
PeptideAtlas:P09234 PRIDE:P09234 Ensembl:ENST00000244520
Ensembl:ENST00000374017 GeneID:6631 KEGG:hsa:6631 UCSC:uc003ojt.2
GeneCards:GC06P034825 H-InvDB:HIX0010405 H-InvDB:HIX0171661
HGNC:HGNC:11157 HPA:CAB034338 MIM:603522 neXtProt:NX_P09234
PharmGKB:PA35998 HOVERGEN:HBG017763 EvolutionaryTrace:P09234
GenomeRNAi:6631 NextBio:25831 PMAP-CutDB:P09234 ArrayExpress:P09234
Bgee:P09234 CleanEx:HS_SNRPC Genevestigator:P09234
GermOnline:ENSG00000124562 Uniprot:P09234
Length = 159
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPTPF 67
>UNIPROTKB|F1RZ16 [details] [associations]
symbol:SNRPC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0000387 "spliceosomal snRNP assembly"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 InterPro:IPR017340 Pfam:PF06220
PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451 GO:GO:0046872
GO:GO:0008270 GO:GO:0003727 GO:GO:0015030 GO:GO:0000387
GO:GO:0005685 GeneTree:ENSGT00670000097795 KO:K11095 CTD:6631
OMA:MLPTPPM EMBL:CT797453 RefSeq:NP_001177132.1 UniGene:Ssc.47838
ProteinModelPortal:F1RZ16 SMR:F1RZ16 PRIDE:F1RZ16
Ensembl:ENSSSCT00000001706 GeneID:100154606 KEGG:ssc:100154606
Uniprot:F1RZ16
Length = 159
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPTPF 67
>MGI|MGI:109489 [details] [associations]
symbol:Snrpc "U1 small nuclear ribonucleoprotein C"
species:10090 "Mus musculus" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005685 "U1 snRNP" evidence=ISO] [GO:0008270
"zinc ion binding" evidence=ISO] [GO:0015030 "Cajal body"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 InterPro:IPR017340
Pfam:PF06220 PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451
MGI:MGI:109489 GO:GO:0046872 GO:GO:0008270 GO:GO:0003727
GO:GO:0015030 GO:GO:0000387 GO:GO:0005685
GeneTree:ENSGT00670000097795 eggNOG:COG5136 HOGENOM:HOG000238970
KO:K11095 HAMAP:MF_03153 CTD:6631 OMA:MLPTPPM OrthoDB:EOG4933KH
EMBL:X96767 EMBL:U70315 EMBL:BC008243 IPI:IPI00123376
RefSeq:NP_035562.1 UniGene:Mm.103949 UniGene:Mm.308514
ProteinModelPortal:Q62241 SMR:Q62241 STRING:Q62241
PhosphoSite:Q62241 PaxDb:Q62241 PRIDE:Q62241
Ensembl:ENSMUST00000071006 GeneID:20630 KEGG:mmu:20630
HOVERGEN:HBG017764 InParanoid:Q62241 NextBio:299027 Bgee:Q62241
CleanEx:MM_SNRPC Genevestigator:Q62241
GermOnline:ENSMUSG00000024217 Uniprot:Q62241
Length = 159
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPAPF 67
>RGD|1306065 [details] [associations]
symbol:Snrpc "small nuclear ribonucleoprotein polypeptide C"
species:10116 "Rattus norvegicus" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005685 "U1 snRNP" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=ISO] [GO:0015030 "Cajal body" evidence=ISO] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0030619 "U1
snRNA binding" evidence=ISO] REFSEQ:NM_001271040 Ncbi:NP_001257969
Length = 159
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPAPF 67
>RGD|1588146 [details] [associations]
symbol:LOC682020 "similar to U1 small nuclear ribonucleoprotein
C (U1 snRNP protein C) (U1C protein) (U1-C)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001059425
Ncbi:XP_001059425
Length = 159
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCNGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPAPF 67
>RGD|1596424 [details] [associations]
symbol:LOC685273 "similar to U1 small nuclear ribonucleoprotein
C (U1 snRNP protein C) (U1C protein) (U1-C)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001063116
Ncbi:XP_001063116
Length = 159
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCNGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPAPF 67
>RGD|2322177 [details] [associations]
symbol:LOC100363879 "small nuclear ribonucleoprotein polypeptide
C-like" species:10116 "Rattus norvegicus" [GO:0000387 "spliceosomal
snRNP assembly" evidence=IEA] [GO:0003727 "single-stranded RNA
binding" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0015030 "Cajal
body" evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 InterPro:IPR017340 Pfam:PF06220
PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451 RGD:2322177
GO:GO:0046872 GO:GO:0008270 GO:GO:0003727 GO:GO:0015030
GO:GO:0000387 EMBL:CH473988 GO:GO:0005685
GeneTree:ENSGT00670000097795 KO:K11095 HAMAP:MF_03153 CTD:6631
OMA:MLPTPPM OrthoDB:EOG4933KH IPI:IPI00372819 RefSeq:NP_001257969.1
UniGene:Rn.2786 ProteinModelPortal:D3ZCL3 SMR:D3ZCL3 PRIDE:D3ZCL3
Ensembl:ENSRNOT00000000586 GeneID:361808 KEGG:rno:361808
NextBio:677668 Uniprot:D3ZCL3
Length = 159
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPAPF 67
>UNIPROTKB|J9PAP5 [details] [associations]
symbol:LOC100856126 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 InterPro:IPR017340
Pfam:PF06220 PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0005685
GeneTree:ENSGT00670000097795 EMBL:AAEX03005210
RefSeq:XP_003639232.1 Ensembl:ENSCAFT00000048452 GeneID:100856126
KEGG:cfa:100856126 OMA:GMAPIMA Uniprot:J9PAP5
Length = 159
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 54/67 (80%), Positives = 59/67 (88%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TT A++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTTAFQQG 60
Query: 61 KIANNPF 67
KI PF
Sbjct: 61 KIPPTPF 67
>UNIPROTKB|J9P5W0 [details] [associations]
symbol:SNRPC "U1 small nuclear ribonucleoprotein C"
species:9615 "Canis lupus familiaris" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 InterPro:IPR017340
Pfam:PF06220 PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0005685
GeneTree:ENSGT00670000097795 EMBL:AAEX03002771
Ensembl:ENSCAFT00000043846 OMA:GSAMIPP Uniprot:J9P5W0
Length = 160
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 54/67 (80%), Positives = 59/67 (88%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIANNPF 67
I PF
Sbjct: 61 TIPPTPF 67
>ZFIN|ZDB-GENE-020419-26 [details] [associations]
symbol:snrpc "small nuclear ribonucleoprotein
polypeptide C" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 InterPro:IPR017340
Pfam:PF06220 PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451
ZFIN:ZDB-GENE-020419-26 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0000381 GO:GO:0005685 GeneTree:ENSGT00670000097795
EMBL:CR847944 IPI:IPI00994279 Ensembl:ENSDART00000128222
ArrayExpress:F1QUK3 Bgee:F1QUK3 Uniprot:F1QUK3
Length = 180
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 52/65 (80%), Positives = 58/65 (89%)
Query: 3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKI 62
++YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ GKI
Sbjct: 24 RFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKI 83
Query: 63 ANNPF 67
PF
Sbjct: 84 PPTPF 88
>UNIPROTKB|E2QWB9 [details] [associations]
symbol:E2QWB9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171 SMART:SM00451
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00670000097795 EMBL:AAEX03016953
Ensembl:ENSCAFT00000039736 Uniprot:E2QWB9
Length = 159
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 49/67 (73%), Positives = 57/67 (85%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYC+TYLTHDSP VRKTHC RKHK+NVK YYQKWM+EQAQNLI+ TTAA++ G
Sbjct: 1 MPKFYCDYCNTYLTHDSPFVRKTHCSDRKHKENVKDYYQKWMKEQAQNLINKTTAAFQHG 60
Query: 61 KIANNPF 67
K + F
Sbjct: 61 KTPSTAF 67
>WB|WBGene00017238 [details] [associations]
symbol:F08B4.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 InterPro:IPR017340
Pfam:PF06220 PIRSF:PIRSF037969 PROSITE:PS50171 SMART:SM00451
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0046872 GO:GO:0008270 GO:GO:0000003 GO:GO:0003723
EMBL:FO080903 GO:GO:0005685 GeneTree:ENSGT00670000097795
eggNOG:COG5136 HOGENOM:HOG000238970 KO:K11095 HAMAP:MF_03153
OMA:MLPTPPM PIR:T29485 RefSeq:NP_501490.1 ProteinModelPortal:P90815
SMR:P90815 IntAct:P90815 STRING:P90815 PaxDb:P90815
EnsemblMetazoa:F08B4.7.1 EnsemblMetazoa:F08B4.7.2 GeneID:177674
KEGG:cel:CELE_F08B4.7 UCSC:F08B4.7.1 CTD:177674 WormBase:F08B4.7
InParanoid:P90815 NextBio:897876 Uniprot:P90815
Length = 142
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPKYYCDYCDT+LTHDSPSVRKTH GRKHKDNV+ +YQKWME+QAQ L+D T A+
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATN 60
Query: 61 KI 62
++
Sbjct: 61 RM 62
>TAIR|locus:2125432 [details] [associations]
symbol:AT4G03120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171 SMART:SM00451
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 GO:GO:0030529 EMBL:AL161496
EMBL:AC005275 EMBL:BT004807 EMBL:AK221730 EMBL:AK227824
IPI:IPI00546101 PIR:F85039 RefSeq:NP_567250.1 UniGene:At.34226
ProteinModelPortal:Q56XE4 SMR:Q56XE4 IntAct:Q56XE4 STRING:Q56XE4
PaxDb:Q56XE4 PRIDE:Q56XE4 EnsemblPlants:AT4G03120.1 GeneID:828071
KEGG:ath:AT4G03120 GeneFarm:4632 TAIR:At4g03120 eggNOG:COG5136
HOGENOM:HOG000238970 InParanoid:Q56XE4 KO:K11095 OMA:ANVRIYY
ProtClustDB:CLSN2689310 Genevestigator:Q56XE4 HAMAP:MF_03153
Uniprot:Q56XE4
Length = 207
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLID 51
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q+LID
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLID 51
>ASPGD|ASPL0000051381 [details] [associations]
symbol:AN1951 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF06220 PROSITE:PS50171 SMART:SM00451 GO:GO:0005634
GO:GO:0046872 EMBL:BN001307 GO:GO:0008270 GO:GO:0003723
GO:GO:0030529 EMBL:AACD01000029 KO:K11095 HAMAP:MF_03153
RefSeq:XP_659555.1 STRING:Q5BBX9 EnsemblFungi:CADANIAT00008611
GeneID:2875351 KEGG:ani:AN1951.2 eggNOG:NOG127124
HOGENOM:HOG000192775 OrthoDB:EOG4VMJR9 Uniprot:Q5BBX9
Length = 236
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA- 59
MPK++CDYCD YLTHDS SVRK H GR H NV YYQ+ +E+AQ++ID+ T++Y A
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNSGRNHLRNVVEYYQQIGQEKAQSVIDSITSSYAAE 60
Query: 60 GKIANNP 66
G+ NP
Sbjct: 61 GQAVPNP 67
>DICTYBASE|DDB_G0278335 [details] [associations]
symbol:snrpC "putative U1 small nuclear
ribonucleoprotein C" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF06220 PROSITE:PS50171 SMART:SM00451 dictyBase:DDB_G0278335
GenomeReviews:CM000152_GR GO:GO:0046872 EMBL:AAFI02000023
GO:GO:0008270 GO:GO:0003723 GO:GO:0005685 HAMAP:MF_03153
RefSeq:XP_642297.1 HSSP:P09234 ProteinModelPortal:Q54YA5 SMR:Q54YA5
STRING:Q54YA5 EnsemblProtists:DDB0233515 GeneID:8621504
KEGG:ddi:DDB_G0278335 eggNOG:NOG137054 ProtClustDB:CLSZ2453243
Uniprot:Q54YA5
Length = 174
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA- 59
MPKYYCDYCD YLTHDSPSVRK+H G++HK V+ +YQ++ E Q+LI+A Y+
Sbjct: 1 MPKYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLFYQQFEAEFTQSLIEARLKEYEES 60
Query: 60 -GKIANNP 66
G++ + P
Sbjct: 61 KGRLIHQP 68
>UNIPROTKB|G4MZB1 [details] [associations]
symbol:MGG_08209 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171 SMART:SM00451
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
EMBL:CM001232 RefSeq:XP_003715191.1 EnsemblFungi:MGG_08209T0
GeneID:2678260 KEGG:mgr:MGG_08209 Uniprot:G4MZB1
Length = 218
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 38/67 (56%), Positives = 48/67 (71%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKA- 59
MPK++CDYCD YLTHDS SVRK H GR H NV YYQ+ E+AQ++ID+ T++Y A
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNSGRNHLRNVIEYYQQIGHEKAQSVIDSITSSYAAE 60
Query: 60 GKIANNP 66
G+ NP
Sbjct: 61 GQAHANP 67
>POMBASE|SPBP35G2.09 [details] [associations]
symbol:usp103 "U1 snRNP-associated protein Usp103
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171 SMART:SM00451
PomBase:SPBP35G2.09 GO:GO:0005829 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GO:GO:0003729 GenomeReviews:CU329671_GR GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 eggNOG:COG5136 KO:K11095 HAMAP:MF_03153
HSSP:P09234 OrthoDB:EOG4VMJR9 RefSeq:NP_595384.1
ProteinModelPortal:Q9P794 SMR:Q9P794 STRING:Q9P794
EnsemblFungi:SPBP35G2.09.1 GeneID:2541289 KEGG:spo:SPBP35G2.09
NextBio:20802400 Uniprot:Q9P794
Length = 182
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLID--ATTAAYK 58
MP+Y CDYC +LTHDS SVRK H GR H NV+ YY K +E+AQ ++ A++ K
Sbjct: 1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLK 60
Query: 59 AG 60
G
Sbjct: 61 KG 62
>CGD|CAL0005358 [details] [associations]
symbol:orf19.5492 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171
SMART:SM00451 CGD:CAL0005358 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000196
EMBL:AACQ01000195 eggNOG:COG5136 KO:K11095 HAMAP:MF_03153
RefSeq:XP_711484.1 RefSeq:XP_711508.1 ProteinModelPortal:Q59P44
SMR:Q59P44 STRING:Q59P44 GeneID:3646893 GeneID:3646924
KEGG:cal:CaO19.12947 KEGG:cal:CaO19.5492 Uniprot:Q59P44
Length = 150
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQ--NLIDATTAAYK 58
MPKYYCDYC +YLTHD+ SVRK+H QGR H +KFY + E +A+ N+ + ++ Y+
Sbjct: 1 MPKYYCDYCKSYLTHDTMSVRKSHLQGRNH---IKFYCD-YYEAKAKETNIWNPSSIPYE 56
>SGD|S000004289 [details] [associations]
symbol:YHC1 "Component of the U1 snRNP complex required for
pre-mRNA splicing" species:4932 "Saccharomyces cerevisiae"
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0071004 "U2-type prespliceosome" evidence=IDA]
[GO:0000243 "commitment complex" evidence=IPI] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171
SMART:SM00451 SGD:S000004289 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 EMBL:BK006945 EMBL:U17243 GO:GO:0000398 GO:GO:0000243
GO:GO:0071004 GO:GO:0005685 eggNOG:COG5136 KO:K11095 HAMAP:MF_03153
OrthoDB:EOG4VMJR9 EMBL:AY692761 PIR:S50382 RefSeq:NP_013401.1
ProteinModelPortal:Q05900 SMR:Q05900 DIP:DIP-6661N IntAct:Q05900
MINT:MINT-612715 STRING:Q05900 PaxDb:Q05900 EnsemblFungi:YLR298C
GeneID:851005 KEGG:sce:YLR298C CYGD:YLR298c HOGENOM:HOG000001133
OMA:CEYCHSY NextBio:967552 Genevestigator:Q05900 GermOnline:YLR298C
Uniprot:Q05900
Length = 231
Score = 119 (46.9 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQ 39
M +YYC+YC +YLTHD+ SVRK+H G+ H YY+
Sbjct: 1 MTRYYCEYCHSYLTHDTLSVRKSHLVGKNHLRITADYYR 39
>POMBASE|SPBC18H10.07 [details] [associations]
symbol:SPBC18H10.07 "WW domain-binding protein 4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=NAS] [GO:0045132 "meiotic chromosome segregation"
evidence=IMP] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF06220 PROSITE:PS50171 SMART:SM00451
PomBase:SPBC18H10.07 GO:GO:0005730 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GO:GO:0003676 GO:GO:0006396 GO:GO:0030529
GO:GO:0045132 PIR:T39771 RefSeq:NP_595731.1
ProteinModelPortal:O60138 EnsemblFungi:SPBC18H10.07.1
GeneID:2540647 KEGG:spo:SPBC18H10.07 eggNOG:NOG242926
OrthoDB:EOG4FR41K NextBio:20801771 Uniprot:O60138
Length = 224
Score = 95 (38.5 bits), Expect = 0.00018, P = 0.00018
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVK 35
+PKYYC YC ++ D+P R++H Q KH+D +K
Sbjct: 8 IPKYYCKYCQIFVK-DTPFARRSHEQTYKHQDAIK 41
>UNIPROTKB|F1PCW3 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 CTD:11193 KO:K13220
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:AAEX03013176
RefSeq:XP_534136.2 Ensembl:ENSCAFT00000007742 GeneID:476935
KEGG:cfa:476935 Uniprot:F1PCW3
Length = 371
Score = 95 (38.5 bits), Expect = 0.00046, P = 0.00046
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGK 61
PK +CDYC ++ + PSV + H +G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENVA----KRISEIKQKSLDKAKEEEKASK 63
>UNIPROTKB|O75554 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0070064 "proline-rich region binding"
evidence=IPI] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 EMBL:AL157877 eggNOG:COG5104
CTD:11193 HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220
OrthoDB:EOG4R7VBT EMBL:AF071185 EMBL:BC104879 EMBL:BC108310
IPI:IPI00026957 RefSeq:NP_009118.1 UniGene:Hs.411300 PDB:2DK1
PDB:2JXW PDBsum:2DK1 PDBsum:2JXW ProteinModelPortal:O75554
SMR:O75554 MINT:MINT-127038 STRING:O75554 PhosphoSite:O75554
PaxDb:O75554 PRIDE:O75554 Ensembl:ENST00000379487 GeneID:11193
KEGG:hsa:11193 UCSC:uc001uxt.3 GeneCards:GC13P041635
HGNC:HGNC:12739 HPA:HPA038965 MIM:604981 neXtProt:NX_O75554
PharmGKB:PA37350 InParanoid:O75554 OMA:HEEVDLE PhylomeDB:O75554
EvolutionaryTrace:O75554 GenomeRNAi:11193 NextBio:42605
ArrayExpress:O75554 Bgee:O75554 CleanEx:HS_WBP4
Genevestigator:O75554 GermOnline:ENSG00000120688 Uniprot:O75554
Length = 376
Score = 95 (38.5 bits), Expect = 0.00047, P = 0.00047
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGK 61
PK +CDYC ++ + PSV + H +G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENVA----KRISEIKQKSLDKAKEEEKASK 63
>RGD|620033 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO;ISS] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 RGD:620033 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 CTD:11193 eggNOG:NOG125287
HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:BC089052
IPI:IPI00554046 RefSeq:NP_446218.1 UniGene:Rn.144631
ProteinModelPortal:Q5HZF2 SMR:Q5HZF2 STRING:Q5HZF2
Ensembl:ENSRNOT00000015605 GeneID:114765 KEGG:rno:114765
UCSC:RGD:620033 InParanoid:Q5HZF2 NextBio:618853
Genevestigator:Q5HZF2 GermOnline:ENSRNOG00000011678 Uniprot:Q5HZF2
Length = 374
Score = 92 (37.4 bits), Expect = 0.00098, P = 0.00098
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGK 61
PK +CDYC ++ + PSV + H +G+ HK+NV + + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENVA----RKISEIKQKSLDKAKEEEKASK 63
>MGI|MGI:109568 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 EMBL:AF071184 MGI:MGI:109568 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 EMBL:CH466535 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0045292 CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962
HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
EMBL:AK019160 EMBL:AK135215 EMBL:AK160559 EMBL:AK162009
EMBL:BC034851 IPI:IPI00117019 PIR:S64714 RefSeq:NP_061235.2
UniGene:Mm.476813 ProteinModelPortal:Q61048 SMR:Q61048
STRING:Q61048 PhosphoSite:Q61048 PaxDb:Q61048 PRIDE:Q61048
Ensembl:ENSMUST00000022601 GeneID:22380 KEGG:mmu:22380
GeneTree:ENSGT00390000013956 InParanoid:Q3TUU8 ChiTaRS:WBP4
NextBio:302741 Bgee:Q61048 CleanEx:MM_WBP4 Genevestigator:Q61048
GermOnline:ENSMUSG00000022023 Uniprot:Q61048
Length = 376
Score = 92 (37.4 bits), Expect = 0.00099, P = 0.00099
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGK 61
PK +CDYC ++ + PSV + H +G+ HK+NV + + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENVA----RRISEIKQKSLDKAKEEEKASK 63
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 164 82 0.00091 102 3 11 22 0.45 29
29 0.43 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 570 (61 KB)
Total size of DFA: 129 KB (2082 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.64u 0.10s 10.74t Elapsed: 00:00:00
Total cpu time: 10.64u 0.10s 10.74t Elapsed: 00:00:00
Start: Thu Aug 15 11:48:39 2013 End: Thu Aug 15 11:48:39 2013