RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6569
(164 letters)
>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 120 bits (302), Expect = 3e-37
Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 K 61
K
Sbjct: 61 K 61
>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ)
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 72
Score = 39.6 bits (92), Expect = 8e-06
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 5 YCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQ 45
C C L +S + H Q RKH + V+ Y E
Sbjct: 34 QCKVCSAVLISESQ--KLAHYQSRKHANKVRRYMAINQGED 72
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 34.7 bits (80), Expect = 4e-04
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVK 35
+ C C Y + KTH + + HK +K
Sbjct: 13 GGLHRCLACARYFIDST--NLKTHFRSKDHKKRLK 45
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346,
JAZ) {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 55
Score = 31.0 bits (70), Expect = 0.009
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQ 39
C C+ +T SP V ++H G+ H N++ Q
Sbjct: 20 RSKCCPVCN--MTFSSPVVAESHYIGKTHIKNLRLREQ 55
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 181
Score = 32.0 bits (72), Expect = 0.018
Identities = 12/67 (17%), Positives = 16/67 (23%)
Query: 94 PGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMR 153
P + + + + MMGM M MM G M M
Sbjct: 3 PALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMN 62
Query: 154 PPMMQDH 160
D
Sbjct: 63 HGGKFDF 69
Score = 26.9 bits (59), Expect = 0.83
Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 108 MMPPGMNMMMMGMNPGMMGMRPMMG-GMGGMGPMMAMGPMGPMGPMRPPMMQD 159
M P ++MM M M G + M G M M G M M
Sbjct: 19 SMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHH 71
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 27.3 bits (60), Expect = 0.48
Identities = 7/60 (11%), Positives = 13/60 (21%), Gaps = 7/60 (11%)
Query: 96 MQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPP 155
+P G++ + M + + P G G P
Sbjct: 47 DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLG-------PRYGFGEAGKPKFGIEP 99
>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
{Chloroflexus aurantiacus [TaxId: 1108]}
Length = 346
Score = 27.2 bits (60), Expect = 1.0
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 109 MPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMG 147
+ G + M + + G+ +G +
Sbjct: 81 IEEMYEKNGGGRGALGVLMNDVSSKLLGVQIGGLLGYLA 119
Score = 24.9 bits (54), Expect = 5.7
Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 102 PGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMG 138
G + ++M ++ ++G++ + G +G +
Sbjct: 85 YEKNGGGRGA-LGVLMNDVSSKLLGVQ-IGGLLGYLA 119
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 25.0 bits (55), Expect = 1.1
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 3 KYYCDYCDTYLTHDS 17
C YC+ +H+
Sbjct: 35 ALKCKYCEKEFSHNV 49
>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Archaeon
Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 56
Score = 25.0 bits (55), Expect = 1.3
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 3 KYYCDYCDTYLTHD 16
K C+YC+T + +
Sbjct: 35 KMRCEYCETIIDEN 48
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
uracil-DNA glycosylase SMUG1 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 245
Score = 25.2 bits (55), Expect = 3.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 116 MMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQR 163
+ +GMNPG GM G+ + GP+ P ++ HP+R
Sbjct: 56 LFLGMNPGPFGMAQT--GVPFGEVNHVRDWLQIEGPVSKPEVE-HPKR 100
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 23.2 bits (50), Expect = 7.2
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 33 NVKFYYQKWMEEQAQNLIDATTAAY 57
++K + ++ E+Q L T
Sbjct: 4 DIKCFPRELDEQQKAALAADITDVI 28
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 23.7 bits (51), Expect = 8.8
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 74 AIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMP 106
A P P+ + P PP PPP + P
Sbjct: 99 AAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEP 131
>d1wfra_ d.106.1.1 (A:) Hypothetical protein TT1886 (TTHA0401)
{Thermus thermophilus [TaxId: 274]}
Length = 143
Score = 23.7 bits (51), Expect = 8.9
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 32 DNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFG 68
++ + + W + ++ + A KA
Sbjct: 6 SGMELFTEAWAQA-YCRKLNESEAYRKAASTWEGSLA 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.450
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,166
Number of extensions: 33013
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 81
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)