BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6570
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 7/231 (3%)
Query: 17 NLKTVLSN-LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPY 75
N++ V+S L P G+AVDWV LYWTD+G ++ I V+ L+G ++ LL L +P
Sbjct: 149 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSG---TSRIEVANLDGAHRKVLLWQSLEKPR 205
Query: 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP 135
IAL P+ G ++WT+ G PRI +S+DG + + D ++ WP G+TIDY +R+YW D
Sbjct: 206 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 265
Query: 136 KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFN 195
K IE NL+G R V P+ + VFED+LY++ + T +I NKF +
Sbjct: 266 KHHVIERANLDGSHRKAV--ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQE 323
Query: 196 VLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCP 246
++ N L+ D+ L +Q N C D + LC+ ++TC CP
Sbjct: 324 IIRNKLHFPMDIHTLHPQRQPAG-KNRCGDNNGGCTHLCLPSGQNYTCACP 373
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 1/146 (0%)
Query: 54 MVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN 113
+ L R + TLL L + +FW+++ + RI A+++G N +V
Sbjct: 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLD-RILRANLNGSNVEEVVST 156
Query: 114 NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNL 173
++ P G+ +D+ +LYW D IE NL+G R V+ + L E +
Sbjct: 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI 216
Query: 174 YFSTYRTNNILKINKFGNSDFNVLAN 199
Y++ + ++ + S ++A+
Sbjct: 217 YWTDWGNTPRIEASSMDGSGRRIIAD 242
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 138/274 (50%), Gaps = 14/274 (5%)
Query: 4 ISSGNVTRVKREMNLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62
I S + R + TV+S ++ P G+AVDW+ N+YWTD+ + V+ +G K
Sbjct: 430 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVK 486
Query: 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGIT 122
++TL ++P I ++P+ G M+WT+ G +I ++G + ++LV NIQWP GIT
Sbjct: 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 546
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN 182
+D S RLYW D K +I SI++NG +R + E P+ L VFED ++++
Sbjct: 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 606
Query: 183 ILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSA---LCINLPS 239
I N+ SD N+LA NL D+++ + Q V N C+ LC+ P
Sbjct: 607 IFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGV-NWCERTTLSNGGCQYLCLPAPQ 665
Query: 240 ------SHTCLCPDHLTEELNVTSGKMSCKVAPA 267
TC CPD + ++ S + A A
Sbjct: 666 INPHSPKFTCACPDGMLLARDMRSCLTEAEAAVA 699
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 144/299 (48%), Gaps = 18/299 (6%)
Query: 4 ISSGNVTRVKREMNLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62
I S + R + TV+S ++ P G+AVDW+ N+YWTD+ + V+ +G K
Sbjct: 448 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVK 504
Query: 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGIT 122
++TL ++P I ++P+ G M+WT+ G +I ++G + ++LV NIQWP GIT
Sbjct: 505 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 564
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN 182
+D S RLYW D K +I SI++NG +R + E P+ L VFED ++++
Sbjct: 565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 624
Query: 183 ILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSA---LCINLPS 239
I N+ SD N+LA NL D+++ Q V N C+ LC+ P
Sbjct: 625 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQ 683
Query: 240 ------SHTCLCPDHLTEELN----VTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCP 288
TC CPD + + +T + + T L + + + HT P
Sbjct: 684 INPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRP 742
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 7/231 (3%)
Query: 17 NLKTVLSN-LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPY 75
N++ V+S L P G+AVDWV LYWTD+G ++ I V+ L+G ++ LL L +P
Sbjct: 106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSG---TSRIEVANLDGAHRKVLLWQSLEKPR 162
Query: 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP 135
IAL P+ G ++WT+ G PRI +S+DG + + D ++ WP G+TIDY +R+YW D
Sbjct: 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 222
Query: 136 KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFN 195
K IE NL+G R V P+ + VFED+LY++ + T +I NKF +
Sbjct: 223 KHHVIERANLDGSHRKAV--ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQE 280
Query: 196 VLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCP 246
++ N L+ D+ L +Q N C D + LC+ ++TC CP
Sbjct: 281 IIRNKLHFPMDIHTLHPQRQPAG-KNRCGDNNGGCTHLCLPSGQNYTCACP 330
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 1/144 (0%)
Query: 56 STLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNI 115
L R + TLL L + +FW+++ + RI A+++G N +V +
Sbjct: 57 QVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLD-RILRANLNGSNVEEVVSTGL 115
Query: 116 QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYF 175
+ P G+ +D+ +LYW D IE NL+G R V+ + L E +Y+
Sbjct: 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 175
Query: 176 STYRTNNILKINKFGNSDFNVLAN 199
+ + ++ + S ++A+
Sbjct: 176 TDWGNTPRIEASSMDGSGRRIIAD 199
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 131/256 (51%), Gaps = 14/256 (5%)
Query: 4 ISSGNVTRVKREMNLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62
I S + R + TV+S ++ P G+AVDW+ N+YWTD+ + V+ +G K
Sbjct: 176 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVK 232
Query: 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGIT 122
++TL ++P I ++P+ G M+WT+ G +I ++G + ++LV NIQWP GIT
Sbjct: 233 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 292
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN 182
+D S RLYW D K +I SI++NG +R + E P+ L VFED ++++
Sbjct: 293 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 352
Query: 183 ILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSA---LCINLPS 239
I N+ SD N+LA NL D+++ Q V N C+ LC+ P
Sbjct: 353 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQ 411
Query: 240 ------SHTCLCPDHL 249
TC CPD +
Sbjct: 412 INPHSPKFTCACPDGM 427
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 12/238 (5%)
Query: 13 KREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLN 72
K E V+S L P G+A DW+G+ LYWTD+ +N I VS L+G ++ L L+
Sbjct: 66 KTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS---ETNRIEVSNLDGSLRKVLFWQELD 122
Query: 73 EPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
+P IAL+P SG M+WT+ G P+I A +DG ++F ++++ I WP G+T+DY Q+LYW
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 182
Query: 133 ADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNS 192
AD K I NL+G +R V + + P+ L +FED LY++ + T++IL NK+
Sbjct: 183 ADAKLNFIHKSNLDGTNRQAV--VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240
Query: 193 DFNVLANNLNRASDVLILQENKQAHNVTNHC--DDKPCHQSALCINLPSS--HTCLCP 246
+ +++ D+ + +Q N TN C D+ C S LC+ P + C CP
Sbjct: 241 GLREIHSDIFSPMDIHAFSQQRQP-NATNPCGIDNGGC--SHLCLMSPVKPFYQCACP 295
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 12/238 (5%)
Query: 13 KREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLN 72
K E V+S L P G+A DW+G+ LYWTD+ +N I VS L+G ++ L L+
Sbjct: 63 KTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS---ETNRIEVSNLDGSLRKVLFWQELD 119
Query: 73 EPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
+P IAL+P SG M+WT+ G P+I A +DG ++F ++++ I WP G+T+DY Q+LYW
Sbjct: 120 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 179
Query: 133 ADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNS 192
AD K I NL+G +R V + + P+ L +FED LY++ + T++IL NK+
Sbjct: 180 ADAKLNFIHKSNLDGTNRQAV--VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 237
Query: 193 DFNVLANNLNRASDVLILQENKQAHNVTNHC--DDKPCHQSALCINLPSS--HTCLCP 246
+ +++ D+ + +Q N TN C D+ C S LC+ P + C CP
Sbjct: 238 GLREIHSDIFSPMDIHAFSQQRQP-NATNPCGIDNGGC--SHLCLMSPVKPFYQCACP 292
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 131/256 (51%), Gaps = 14/256 (5%)
Query: 4 ISSGNVTRVKREMNLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62
I S + R + TV+S ++ P G+AVDW+ N+YWTD+ + V+ +G K
Sbjct: 136 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVK 192
Query: 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGIT 122
++TL ++P I ++P+ G M+WT+ G +I ++G + ++LV NIQWP GIT
Sbjct: 193 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 252
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN 182
+D S RLYW D K +I SI++NG +R + E P+ L VFED ++++
Sbjct: 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 312
Query: 183 ILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSA---LCINLPS 239
I N+ SD N+LA NL D+++ Q V N C+ LC+ P
Sbjct: 313 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQ 371
Query: 240 ------SHTCLCPDHL 249
TC CPD +
Sbjct: 372 INPHSPKFTCACPDGM 387
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 12/238 (5%)
Query: 13 KREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLN 72
K E V+S L P G+A DW+G+ LYWTD+ +N I VS L+G ++ L L+
Sbjct: 71 KTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS---ETNRIEVSNLDGSLRKVLFWQELD 127
Query: 73 EPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
+P IAL+P SG M+WT+ G P+I A +DG ++F ++++ I WP G+T+DY Q+LYW
Sbjct: 128 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 187
Query: 133 ADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNS 192
AD K I NL+G +R V + + P+ L +FED LY++ + T++IL NK+
Sbjct: 188 ADAKLNFIHKSNLDGTNRQAV--VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 245
Query: 193 DFNVLANNLNRASDVLILQENKQAHNVTNHC--DDKPCHQSALCINLPSS--HTCLCP 246
+ +++ D+ + +Q N TN C D+ C S LC+ P + C CP
Sbjct: 246 GLREIHSDIFSPMDIHAFSQQRQP-NATNPCGIDNGGC--SHLCLMSPVKPFYQCACP 300
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 18/232 (7%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
V + + P G+AVDWV +NLYWTD G ++ I V+ L G ++ L++ L EP I L
Sbjct: 386 VVTAQIAHPDGIAVDWVARNLYWTDTG---TDRIEVTRLNGTMRKILISEDLEEPRAIVL 442
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKART 139
+P+ G M+WT+ G P+I A++DG ++ LV+ ++ WP G+ +DY ++YW D K
Sbjct: 443 DPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK 502
Query: 140 IESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLAN 199
IE +N +G R V+ ED + + D +Y++ ++ +I +++K +++ V+ +
Sbjct: 503 IEVMNTDGTGRRVL--VEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHK-RSAEREVIID 559
Query: 200 NLNRASDVLILQENKQAHNVTNHCDDKPCHQ-----SALCINLPSSHTCLCP 246
L D++ L +A NV PC + S LC+ P C CP
Sbjct: 560 QL---PDLMGL----KATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACP 604
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Query: 8 NVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL 67
VTR+ M + +L +PR + +D + +YWTD G I + L+G + L+
Sbjct: 417 EVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG--EIPKIERAALDGSDRVVLV 474
Query: 68 NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITI--DY 125
NT L P +AL+ G+++W + +I + DG + LV++ I G T+ DY
Sbjct: 475 NTSLGWPNGLALDYDEGKIYWGD-AKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDY 533
Query: 126 PSQRLYWADPKARTIESINLNGKDRFVV 153
+YW D + R+IE ++ +R V+
Sbjct: 534 ----VYWTDWQRRSIERVHKRSAEREVI 557
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 77 IALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK 136
I +P+ G ++WT+ ++ I + IDG +V I P GI +D+ ++ LYW D
Sbjct: 354 IDYDPVEGYIYWTDDEVRA-IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTG 412
Query: 137 ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINK--FGNSDF 194
IE LNG R ++ + + L+ +Y++ + I KI + SD
Sbjct: 413 TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW--GEIPKIERAALDGSDR 470
Query: 195 NVLAN 199
VL N
Sbjct: 471 VVLVN 475
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 12/238 (5%)
Query: 13 KREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLN 72
K E V+S L P G+A DW+G+ LYWTD+ +N I VS L+G ++ L L+
Sbjct: 63 KTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS---ETNRIEVSNLDGSLRKVLFWQELD 119
Query: 73 EPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
+P IAL+P SG M+WT+ G P+I A +DG ++F ++++ I WP G+T+DY Q+LYW
Sbjct: 120 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 179
Query: 133 ADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNS 192
AD K I NL+G +R V + + P+ L +FED LY++ + T++IL NK+
Sbjct: 180 ADAKLNFIHKSNLDGTNRQAV--VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 237
Query: 193 DFNVLANNLNRASDVLILQENKQAHNVTNHC--DDKPCHQSALCINLPSS--HTCLCP 246
+ +++ D+ + +Q N TN C D+ C S LC+ P + C CP
Sbjct: 238 GLREIHSDIFSPMDIHAFSQQRQP-NATNPCGIDNGGC--SHLCLMSPVKPFYQCACP 292
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 18/232 (7%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
V + + P G+AVDWV +NLYWTD G ++ I V+ L G ++ L++ L EP I L
Sbjct: 378 VVTAQIAHPDGIAVDWVARNLYWTDTG---TDRIEVTRLNGTMRKILISEDLEEPRAIVL 434
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKART 139
+P+ G M+WT+ G P+I A++DG ++ LV+ ++ WP G+ +DY ++YW D K
Sbjct: 435 DPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK 494
Query: 140 IESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLAN 199
IE +N +G R V+ ED + + D +Y++ ++ +I +++K +++ V+ +
Sbjct: 495 IEVMNTDGTGRRVL--VEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHK-RSAEREVIID 551
Query: 200 NLNRASDVLILQENKQAHNVTNHCDDKPCHQ-----SALCINLPSSHTCLCP 246
L D++ L +A NV PC + S LC+ P C CP
Sbjct: 552 QL---PDLMGL----KATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACP 596
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Query: 8 NVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL 67
VTR+ M + +L +PR + +D + +YWTD G I + L+G + L+
Sbjct: 409 EVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG--EIPKIERAALDGSDRVVLV 466
Query: 68 NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITI--DY 125
NT L P +AL+ G+++W + +I + DG + LV++ I G T+ DY
Sbjct: 467 NTSLGWPNGLALDYDEGKIYWGD-AKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDY 525
Query: 126 PSQRLYWADPKARTIESINLNGKDRFVV 153
+YW D + R+IE ++ +R V+
Sbjct: 526 ----VYWTDWQRRSIERVHKRSAEREVI 549
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 77 IALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK 136
I +P+ G ++WT+ ++ I + IDG +V I P GI +D+ ++ LYW D
Sbjct: 346 IDYDPVEGYIYWTDDEVRA-IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTG 404
Query: 137 ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINK--FGNSDF 194
IE LNG R ++ + + L+ +Y++ + I KI + SD
Sbjct: 405 TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW--GEIPKIERAALDGSDR 462
Query: 195 NVLAN 199
VL N
Sbjct: 463 VVLVN 467
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 125/238 (52%), Gaps = 14/238 (5%)
Query: 20 TVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78
TV+S ++ P G+AVDW+ N+YWTD+ + V+ +G K++TL ++P I
Sbjct: 70 TVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVKRKTLFRENGSKPRAIV 126
Query: 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR 138
++P+ G M+WT+ G +I ++G + ++LV NIQWP GIT+D S RLYW D K
Sbjct: 127 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186
Query: 139 TIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLA 198
+I SI++NG +R + E P+ L VFED ++++ I N+ SD N+LA
Sbjct: 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246
Query: 199 NNLNRASDVLILQENKQAHNVTNHCDDKPCHQSA---LCINLPS------SHTCLCPD 247
NL D+++ Q V N C+ LC+ P TC CPD
Sbjct: 247 ENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 303
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 10/222 (4%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87
P G+AVDW+GKNLYW D G +N I VS L+G+ ++ L+ L+ P +AL+P G M+
Sbjct: 82 PEGMAVDWLGKNLYWADTG---TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMY 138
Query: 88 WTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147
WTE G KP+I A++DG + LV N+ G+TIDY +RLYW D IES N+ G
Sbjct: 139 WTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197
Query: 148 KDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDV 207
+R V+ D+ P+ L ++D +Y++ + +I + NK + ++ +L+ D+
Sbjct: 198 LNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDI 254
Query: 208 LILQENKQAHNVTNHCDDKPCHQSALCINLP-SSHTCLCPDH 248
L+ ++Q+ N C H S LC+ +P C CP H
Sbjct: 255 LVFHSSRQSG--WNECASSNGHCSHLCLAVPVGGFVCGCPAH 294
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 27/235 (11%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87
P +++D + +YWT ++N I V+ L+GR +L + P + + P G M+
Sbjct: 391 PYDLSIDIYSRYIYWT---CEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMY 447
Query: 88 WTELGIK-PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146
+T L + P+I A++DG + L + + P + +D +L+WAD R IES +L+
Sbjct: 448 FTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS 507
Query: 147 GKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASD 206
G +R V+ + N +P L VFE+ LY+ + I KI+ G + + + SD
Sbjct: 508 GANRIVL--EDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSD 565
Query: 207 V-----LILQENKQAHNVTNHCDDKPCHQ-----SALCINLPSSHT-CLCPDHLT 250
+ L LQE +Q PC Q S +C+ T C CP HL
Sbjct: 566 IHAVKELNLQEYRQ----------HPCAQDNGGCSHICLVKGDGTTRCSCPMHLV 610
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 69 TGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQ 128
TG+ E + + R++WT++ +K IS A ++G ++V+ + +P G+ +D+ +
Sbjct: 34 TGVKEASALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92
Query: 129 RLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINK 188
LYWAD IE L+G+ R V+ + + + L+ E +Y++ + +
Sbjct: 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152
Query: 189 FGNSDFNVLANNLNRASDVLI 209
S+ L N+ RA+ + I
Sbjct: 153 MDGSERTTLVPNVGRANGLTI 173
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
T++ N+ G+ +D+ + LYWTD +N I S + G + + + + P+ L
Sbjct: 160 TLVPNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIAD---DLPHPFGL 213
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
++WT+ + G+N+ ++ ++ + I + + S++ W
Sbjct: 214 TQYQDYIYWTDWSRRSIERANKTSGQNR-TIIQGHLDYVMDILVFHSSRQSGW 265
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 10/222 (4%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87
P G+AVDW+GKNLYW D G +N I VS L+G+ ++ L+ L+ P +AL+P G M+
Sbjct: 87 PEGMAVDWLGKNLYWADTG---TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMY 143
Query: 88 WTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147
WTE G KP+I A++DG + LV N+ G+TIDY +RLYW D IES N+ G
Sbjct: 144 WTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 202
Query: 148 KDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDV 207
+R V+ D+ P+ L ++D +Y++ + +I + NK + ++ +L+ D+
Sbjct: 203 LNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDI 259
Query: 208 LILQENKQAHNVTNHCDDKPCHQSALCINLP-SSHTCLCPDH 248
L+ ++Q+ N C H S LC+ +P C CP H
Sbjct: 260 LVFHSSRQSG--WNECASSNGHCSHLCLAVPVGGFVCGCPAH 299
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 27/235 (11%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87
P +++D + +YWT ++N I V+ L+GR +L + P I + P G M+
Sbjct: 396 PYDLSIDIYSRYIYWT---CEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMY 452
Query: 88 WTELGIK-PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146
+T L + P+I A++DG + L + + P + +D +L+WAD R IES +L+
Sbjct: 453 FTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS 512
Query: 147 GKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASD 206
G +R V+ + N +P L VFE+ LY+ + I KI+ G + + + SD
Sbjct: 513 GANRIVL--EDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSD 570
Query: 207 V-----LILQENKQAHNVTNHCDDKPCHQ-----SALCINLPSSHT-CLCPDHLT 250
+ L LQE +Q PC Q S +C+ T C CP HL
Sbjct: 571 IHAVKELNLQEYRQ----------HPCAQDNGGCSHICLVKGDGTTRCSCPMHLV 615
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 69 TGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQ 128
TG+ E + + R++WT++ +K IS A ++G ++V+ + +P G+ +D+ +
Sbjct: 39 TGVKEASALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 97
Query: 129 RLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINK 188
LYWAD IE L+G+ R V+ + + + L+ E +Y++ + +
Sbjct: 98 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 157
Query: 189 FGNSDFNVLANNLNRASDVLI 209
S+ L N+ RA+ + I
Sbjct: 158 MDGSERTTLVPNVGRANGLTI 178
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
T++ N+ G+ +D+ + LYWTD +N I S + G + + + + P+ L
Sbjct: 165 TLVPNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIAD---DLPHPFGL 218
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
++WT+ + G+N+ ++ ++ + I + + S++ W
Sbjct: 219 TQYQDYIYWTDWSRRSIERANKTSGQNR-TIIQGHLDYVMDILVFHSSRQSGW 270
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 10/222 (4%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87
P G+AVDW+GKNLYW D G +N I VS L+G+ ++ L+ L+ P +AL+P G M+
Sbjct: 80 PEGMAVDWLGKNLYWADTG---TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMY 136
Query: 88 WTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147
WTE G KP+I A++DG + LV N+ G+TIDY +RLYW D IES N+ G
Sbjct: 137 WTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 195
Query: 148 KDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDV 207
+R V+ D+ P+ L ++D +Y++ + +I + NK + ++ +L+ D+
Sbjct: 196 LNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDI 252
Query: 208 LILQENKQAHNVTNHCDDKPCHQSALCINLP-SSHTCLCPDH 248
L+ ++Q+ N C H S LC+ +P C CP H
Sbjct: 253 LVFHSSRQSG--WNECASSNGHCSHLCLAVPVGGFVCGCPAH 292
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 27/235 (11%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87
P +++D + +YWT ++N I V+ L+GR +L + P I + P G M+
Sbjct: 389 PYDLSIDIYSRYIYWT---CEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMY 445
Query: 88 WTELGIK-PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146
+T L + P+I A++DG + L + + P + +D +L+WAD R IES +L+
Sbjct: 446 FTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS 505
Query: 147 GKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASD 206
G +R V+ + N +P L VFE+ LY+ + I KI+ G + + + SD
Sbjct: 506 GANRIVL--EDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSD 563
Query: 207 V-----LILQENKQAHNVTNHCDDKPCHQ-----SALCINLPSSHT-CLCPDHLT 250
+ L LQE +Q PC Q S +C+ T C CP HL
Sbjct: 564 IHAVKELNLQEYRQ----------HPCAQDNGGCSHICLVKGDGTTRCSCPMHLV 608
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 69 TGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQ 128
TG+ E + + R++WT++ +K IS A ++G ++V+ + +P G+ +D+ +
Sbjct: 32 TGVKEASALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 90
Query: 129 RLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINK 188
LYWAD IE L+G+ R V+ + + + L+ E +Y++ + +
Sbjct: 91 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 150
Query: 189 FGNSDFNVLANNLNRASDVLI 209
S+ L N+ RA+ + I
Sbjct: 151 MDGSERTTLVPNVGRANGLTI 171
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
T++ N+ G+ +D+ + LYWTD +N I S + G + + + + P+ L
Sbjct: 158 TLVPNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIAD---DLPHPFGL 211
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
++WT+ + G+N+ ++ ++ + I + + S++ W
Sbjct: 212 TQYQDYIYWTDWSRRSIERANKTSGQNR-TIIQGHLDYVMDILVFHSSRQSGW 263
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 15/187 (8%)
Query: 2 ASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR 61
AS+ G T + R+ +L P G+A+D +G+ ++WTD+ + I V+ ++G
Sbjct: 63 ASLHGGEPTTIIRQ--------DLGSPEGIALDHLGRTIFWTDS---QLDRIEVAKMDGT 111
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIK-PRISGASIDGKNKFNLVDNNIQWPTG 120
++R L +TGL P I +P+ G ++WT+ P+I + +DG N+ L +N+ P G
Sbjct: 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG 171
Query: 121 ITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRT 180
+T D S +L W D E +N R V E Y P+ + + NLY++ ++T
Sbjct: 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--EGLQY-PFAVTSYGKNLYYTDWKT 228
Query: 181 NNILKIN 187
N+++ ++
Sbjct: 229 NSVIAMD 235
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 2/165 (1%)
Query: 37 GKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPR 96
G +L + G + +T++ + + L+ +A + + ++WT++ +P
Sbjct: 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS-EPS 59
Query: 97 ISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT 156
I AS+ G ++ ++ P GI +D+ + ++W D + IE ++G R V++ T
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Query: 157 EDNGYKPYKLEVFEDNLYFSTY-RTNNILKINKFGNSDFNVLANN 200
+ + NLY++ + R N ++ + ++ +LA +
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD 164
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCL-NLKCQNGGVCVNKTTGLECDC 440
C+ C C NGG C + C CP GF G C++ L +C NGG+CV T G C C
Sbjct: 146 CQQAECPGGCRNGGFC-NERRICECPDGFHGPHCEKALCTPRCMNGGLCV--TPGF-CIC 201
Query: 441 PKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCT----CLNGD---S 493
P +YG NC + C C NG KC+C PG G++C+ C NG
Sbjct: 202 PPGFYGVNCDKANCSTTCFNGGTCFYPG--KCICPPGLEGEQCEISKCPQPCRNGGKCIG 259
Query: 494 GPKCMCSPGYSGKKCDTCTCLNG----GTCIPNSKNNVCKCPSQYTGRRC 539
KC CS GY G C C G GTC + N C+C + GR C
Sbjct: 260 KSKCKCSKGYQGDLCSKPVCEPGCGAHGTC---HEPNKCQCQEGWHGRHC 306
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 371 CHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC-LNLKCQNGGVC 429
C C + G CE +C +C NGG C+ T C+CPPGF G C + + C NGG C
Sbjct: 167 CECPDGFHGPHCEKALCTPRCMNGGLCV-TPGFCICPPGFYGVNCDKANCSTTCFNGGTC 225
Query: 430 VNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCL 489
+C CP G+ C+ S+C C NG I S KC CS GY G C C
Sbjct: 226 FYPG---KCICPPGLEGEQCEISKCPQPCRNGGKCIGKS--KCKCSKGYQGDLCSKPVCE 280
Query: 490 NG-------DSGPKCMCSPGYSGKKCD 509
G KC C G+ G+ C+
Sbjct: 281 PGCGAHGTCHEPNKCQCQEGWHGRHCN 307
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 85/207 (41%), Gaps = 52/207 (25%)
Query: 423 CQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKK 482
C+NGG C + C+CP ++G +C+ + C C+NG +T C+C PG+ G
Sbjct: 155 CRNGGFCNERRI---CECPDGFHGPHCEKALCTPRCMNGGLCVTPG--FCICPPGFYGVN 209
Query: 483 CDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542
CD C + TC NGGTC K C CP G +CE
Sbjct: 210 CDKANC---------------------STTCFNGGTCFYPGK---CICPPGLEGEQCE-- 243
Query: 543 VGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNA 602
+KC P C N G C+ GK CKC Y G C++ P C C
Sbjct: 244 ---------ISKC-PQPCRNGGKCI---GKSKCKCSKGYQGDLCSK----PVCEPGCGAH 286
Query: 603 GLCSYSKQGKPVCTCVNGWSGITCSER 629
G C + C C GW G C++R
Sbjct: 287 GTCHEPNK----CQCQEGWHGRHCNKR 309
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 23/159 (14%)
Query: 331 CICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE 388
C C + F+G +CEK ++C C+N G+C P + C C P + G C+ C
Sbjct: 167 CECPDGFHGPHCEK---ALCTPRCMNGGLCV------TPGF-CICPPGFYGVNCDKANCS 216
Query: 389 NKCHNGGTCIATTQTCVCPPGFTGDTCQ--QCLNLKCQNGGVCVNKTTGLECDCPKFYYG 446
C NGGTC + C+CPPG G+ C+ +C C+NGG C+ K+ +C C K Y G
Sbjct: 217 TTCFNGGTCFYPGK-CICPPGLEGEQCEISKCPQ-PCRNGGKCIGKS---KCKCSKGYQG 271
Query: 447 KNCQYSQCKNYC-VNGECSITDSGPKCMCSPGYSGKKCD 484
C C+ C +G C + KC C G+ G+ C+
Sbjct: 272 DLCSKPVCEPGCGAHGTCHEPN---KCQCQEGWHGRHCN 307
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 62/160 (38%), Gaps = 36/160 (22%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
C NGG C ++ +C+CP + G CE A+ CTP C N G CV
Sbjct: 155 CRNGGFC---NERRICECPDGFHGPHCEKAL-----------CTPR-CMNGGLCVT---P 196
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSC 632
C C P + G C D +C C N G C Y + C C G G C E C
Sbjct: 197 GFCICPPGFYGVNC----DKANCSTTCFNGGTCFYPGK----CICPPGLEGEQC-EISKC 247
Query: 633 AHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672
C NGG C K C C +GY G C V
Sbjct: 248 PQPCRNGGKCIG---------KSKCKCSKGYQGDLCSKPV 278
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 557 PNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCT 616
P C N G C + C+C + G C + +P C N GLC C
Sbjct: 152 PGGCRNGGFC---NERRICECPDGFHGPHCEKALCTPRCMN----GGLCVTPG----FCI 200
Query: 617 CVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
C G+ G+ C ++ +C+ CFNGGTC CICP G G +C+
Sbjct: 201 CPPGFYGVNC-DKANCSTTCFNGGTCFYPGK---------CICPPGLEGEQCEI 244
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 56/129 (43%), Gaps = 30/129 (23%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRI---------------CENKCHNGG 395
PC N G+C P L + ++ C C +T C S + N CHNGG
Sbjct: 7 PCENGGICLPGLA--DGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGG 64
Query: 396 TCIATTQ---------TCVCPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDCPK 442
TC + C CP GF G CQ +C C+NGG+C + C+CP
Sbjct: 65 TCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPG 124
Query: 443 FYYGKNCQY 451
+ G+NCQY
Sbjct: 125 EFMGRNCQY 133
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 423 CQNGGVCVNKTT--GLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSG 480
C+NGG+C+ C+CP + NC + E T +GP C +P ++G
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVV---EVASDEEEPTSAGP-CTPNPCHNG 63
Query: 481 KKCDTCTCLNGDS--GPKCMCSPGYSG-------KKCDTCTCLNGGTCIPNSKNNVCKCP 531
C+ GD+ G C C G++G +C+ C NGG C N C+CP
Sbjct: 64 GTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECP 123
Query: 532 SQYTGRRCE 540
++ GR C+
Sbjct: 124 GEFMGRNCQ 132
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 62/171 (36%), Gaps = 50/171 (29%)
Query: 508 CDTCTCLNGGTCIPNSKNNV--CKCPSQYTGRRCECAV---GDTSCASLANKCTPNYCSN 562
CD C NGG C+P + C+CP +T C V D + A CTPN C N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 563 NGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWS 622
GTC + E Y G Y VC C G++
Sbjct: 63 GGTCEISEA---------YRGDT------------------FIGY------VCKCPRGFN 89
Query: 623 GITCSERVSCAHF--CFNGGTCRE--QNYSLDPDLKPICICPRGYAGVRCQ 669
GI C ++ C NGG C + NYS C CP + G CQ
Sbjct: 90 GIHCQHNINECEVEPCKNGGICTDLVANYS--------CECPGEFMGRNCQ 132
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 465 ITDSGPKCMCSPGYSGKKCDTCTCLNGD-----SGPKCMCSPGYSGKKCDTCTCLNGGTC 519
+ D C C G++ C + + D S C +P ++G C+ G T
Sbjct: 18 LADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTF 77
Query: 520 IPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLP 579
I VCKCP + G C+ + N+C C N G C + SC+C
Sbjct: 78 I----GYVCKCPRGFNGIHCQHNI---------NECEVEPCKNGGICTDLVANYSCECPG 124
Query: 580 PYSGKQC 586
+ G+ C
Sbjct: 125 EFMGRNC 131
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE---NKCHNGGTCIATTQ--TCV 405
PC + G C L +++C C YTG RCE + E N C N TC+ C+
Sbjct: 14 PCEHAGKCINTLG----SFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 406 CPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C PG+ G C+ +C + C + G C++K +C+CP + G CQ
Sbjct: 70 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 558 NYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
N C + G C+ G C+CL Y+G +C E + + N C N C + G+ C C
Sbjct: 13 NPCEHAGKCINTLGSFECQCLQGYTGPRC-EIDVNECVSNPCQNDATC-LDQIGEFQCIC 70
Query: 618 VNGWSGITCSERV-SCAHF-CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYI 675
+ G+ G+ C CA C + G C LD + C CP G+ G CQ +H+I
Sbjct: 71 MPGYEGVHCEVNTDECASSPCLHNGRC------LDKINEFQCECPTGFTGHLCQVDLHHI 124
Query: 676 SKKQSYVNSH 685
Q V +H
Sbjct: 125 LDAQKMVWNH 134
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 28/125 (22%)
Query: 423 CQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKK 482
C++ G C+N EC C + Y G C+ N CV+ C
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEID--VNECVSNPCQ------------------ 54
Query: 483 CDTCTCLNGDSGPKCMCSPGYSGKKCDTCT-------CLNGGTCIPNSKNNVCKCPSQYT 535
+ TCL+ +C+C PGY G C+ T CL+ G C+ C+CP+ +T
Sbjct: 55 -NDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 113
Query: 536 GRRCE 540
G C+
Sbjct: 114 GHLCQ 118
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 317 NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMC---PCLNQGMCYPDLTHPEPTYKCHC 373
N TC D + CIC + G +CE VN C PCL+ G C + ++C C
Sbjct: 55 NDATC-LDQIGEFQCICMPGYEGVHCE-VNTDECASSPCLHNGRCLDKIN----EFQCEC 108
Query: 374 APSYTGARCESRI 386
+TG C+ +
Sbjct: 109 PTGFTGHLCQVDL 121
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE---NKCHNGGTCIATTQ--TCV 405
PC + G C L +++C C YTG RCE + E N C N TC+ C+
Sbjct: 12 PCEHAGKCINTLG----SFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 67
Query: 406 CPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C PG+ G C+ +C + C + G C++K +C+CP + G CQ
Sbjct: 68 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 28/125 (22%)
Query: 423 CQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKK 482
C++ G C+N EC C + Y G C+ N CV+ C
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEID--VNECVSNPCQ------------------ 52
Query: 483 CDTCTCLNGDSGPKCMCSPGYSGKKCDTCT-------CLNGGTCIPNSKNNVCKCPSQYT 535
+ TCL+ +C+C PGY G C+ T CL+ G C+ C+CP+ +T
Sbjct: 53 -NDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 111
Query: 536 GRRCE 540
G C+
Sbjct: 112 GHLCQ 116
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
C + G CI + C+C YTG RCE V N+C N C N+ TC+ G+
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDV---------NECVSNPCQNDATCLDQIGE 63
Query: 573 PSCKCLPPYSGKQCTERED----SPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCS 627
C C+P Y G C D SP HN G C K + C C G++G C
Sbjct: 64 FQCICMPGYEGVHCEVNTDECASSPCLHN-----GRC-LDKINEFQCECPTGFTGHLCQ 116
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 558 NYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
N C + G C+ G C+CL Y+G +C E + + N C N C + G+ C C
Sbjct: 11 NPCEHAGKCINTLGSFECQCLQGYTGPRC-EIDVNECVSNPCQNDATC-LDQIGEFQCIC 68
Query: 618 VNGWSGITCSERV-SCAHF-CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
+ G+ G+ C CA C + G C LD + C CP G+ G CQ
Sbjct: 69 MPGYEGVHCEVNTDECASSPCLHNGRC------LDKINEFQCECPTGFTGHLCQ 116
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 317 NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMC---PCLNQGMCYPDLTHPEPTYKCHC 373
N TC D + CIC + G +CE VN C PCL+ G C + ++C C
Sbjct: 53 NDATC-LDQIGEFQCICMPGYEGVHCE-VNTDECASSPCLHNGRCLDKINE----FQCEC 106
Query: 374 APSYTGARCE 383
+TG C+
Sbjct: 107 PTGFTGHLCQ 116
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 391 CHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C N G C T C+CPPGF G TC++ L G C + +G E C + +
Sbjct: 205 CMNNGVCHEDTGECICPPGFMGRTCEKACELH-TFGRTCKERCSGQE-GCKSYVF----- 257
Query: 451 YSQCKNYCVNGECSITDSGPKC--MCSPGYSGKKCDT-CTCLNG---DSGPKCMCSPGYS 504
C C+ G +C C PG+ G C C+C NG D C+CSPG+
Sbjct: 258 ---CLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQ 314
Query: 505 GKKCD 509
G +C+
Sbjct: 315 GLQCE 319
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 51/167 (30%)
Query: 333 CQENFYGTYCEKVNNSMC-PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCES------- 384
C+ +G C N +C C+N G+C+ D T +C C P + G CE
Sbjct: 189 CEAQKWGPEC----NHLCTACMNNGVCHED------TGECICPPGFMGRTCEKACELHTF 238
Query: 385 -RICENKCHNGG------TCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLE 437
R C+ +C C+ C C G+ G C N C G
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQC----NEACHPG----------- 283
Query: 438 CDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCD 484
+YG +C+ + C NGE + D C+CSPG+ G +C+
Sbjct: 284 ------FYGPDCKL---RCSCNNGE--MCDRFQGCLCSPGWQGLQCE 319
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 537 RRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTER------- 589
RRCE C L CT C NNG C E C C P + G+ C +
Sbjct: 187 RRCEAQKWGPECNHL---CT--ACMNNGVCH--EDTGECICPPGFMGRTCEKACELHTFG 239
Query: 590 ---EDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQ- 645
++ S C + C G C+C GW G+ C+E H F G C+ +
Sbjct: 240 RTCKERCSGQEGCKSYVFCLPDPYG---CSCATGWKGLQCNE---ACHPGFYGPDCKLRC 293
Query: 646 --NYSLDPDLKPICICPRGYAGVRCQ 669
N D C+C G+ G++C+
Sbjct: 294 SCNNGEMCDRFQGCLCSPGWQGLQCE 319
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 31/123 (25%)
Query: 317 NHGTCEFDDDFDPHCICQENFYGTYCEKV-----NNSMCP--------CLNQGMCYPDLT 363
N+G C D CIC F G CEK C C + C PD
Sbjct: 207 NNGVCHEDTG---ECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPD-- 261
Query: 364 HPEPTYKCHCAPSYTGARCESR--------ICENKCH-NGGTCIATTQTCVCPPGFTGDT 414
Y C CA + G +C C+ +C N G Q C+C PG+ G
Sbjct: 262 ----PYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQ 317
Query: 415 CQQ 417
C++
Sbjct: 318 CER 320
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 46/133 (34%), Gaps = 30/133 (22%)
Query: 512 TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTC---VL 568
C+N G C + C CP + GR CE A + C CS C V
Sbjct: 204 ACMNNGVC--HEDTGECICPPGFMGRTCEKAC---ELHTFGRTCK-ERCSGQEGCKSYVF 257
Query: 569 IEGKP-SCKCLPPYSGKQCTEREDSPSCHN-----------YCDNAGLCSYSKQGKPVCT 616
P C C + G QC E +CH C+N +C QG C
Sbjct: 258 CLPDPYGCSCATGWKGLQCNE-----ACHPGFYGPDCKLRCSCNNGEMCDRF-QG---CL 308
Query: 617 CVNGWSGITCSER 629
C GW G+ C
Sbjct: 309 CSPGWQGLQCERE 321
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 367 PTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC 418
PT KC C+P + G C + CE C +GG C+ + C+C G+ G C+Q
Sbjct: 406 PTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK-CLCKKGYLGPQCEQV 456
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC----TCLNGD---SGPKCMCSPGYS 504
S+C C NG C+ T KC CSPG+ G C T C +G KC+C GY
Sbjct: 393 SECSRLCRNGYCTPTG---KCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYL 449
Query: 505 GKKCD 509
G +C+
Sbjct: 450 GPQCE 454
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 488 CLNGDSGP--KCMCSPGYSGKKCDTC----TCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C NG P KC CSPG+ G C T C +GG C+ + N C C Y G +CE
Sbjct: 399 CRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCV---RPNKCLCKKGYLGPQCE 454
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 367 PTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC 418
PT KC C+P + G C + CE C +GG C+ + C+C G+ G C+Q
Sbjct: 406 PTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK-CLCKKGYLGPQCEQV 456
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC----TCLNGD---SGPKCMCSPGYS 504
S+C C NG C+ T KC CSPG+ G C T C +G KC+C GY
Sbjct: 393 SECSRLCRNGYCTPTG---KCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYL 449
Query: 505 GKKCD 509
G +C+
Sbjct: 450 GPQCE 454
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 488 CLNGDSGP--KCMCSPGYSGKKCDTC----TCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C NG P KC CSPG+ G C T C +GG C+ + N C C Y G +CE
Sbjct: 399 CRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCV---RPNKCLCKKGYLGPQCE 454
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 367 PTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC 418
PT KC C+P + G C + CE C +GG C+ + C+C G+ G C+Q
Sbjct: 406 PTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK-CLCKKGYLGPQCEQV 456
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC----TCLNGD---SGPKCMCSPGYS 504
S+C C NG C+ T KC CSPG+ G C T C +G KC+C GY
Sbjct: 393 SECSRLCRNGYCTPTG---KCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYL 449
Query: 505 GKKCD 509
G +C+
Sbjct: 450 GPQCE 454
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 488 CLNGDSGP--KCMCSPGYSGKKCDTC----TCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C NG P KC CSPG+ G C T C +GG C+ + N C C Y G +CE
Sbjct: 399 CRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCV---RPNKCLCKKGYLGPQCE 454
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 367 PTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ 416
PT KC C+P + G C + CE C +GG C+ + C+C G+ G C+
Sbjct: 427 PTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK-CLCKKGYLGPQCE 475
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC----TCLNGD---SGPKCMCSPGYS 504
S+C C NG C+ T KC CSPG+ G C T C +G KC+C GY
Sbjct: 414 SECSRLCRNGYCTPTG---KCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYL 470
Query: 505 GKKCD 509
G +C+
Sbjct: 471 GPQCE 475
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 488 CLNGDSGP--KCMCSPGYSGKKCDTC----TCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C NG P KC CSPG+ G C T C +GG C+ + N C C Y G +CE
Sbjct: 420 CRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCV---RPNKCLCKKGYLGPQCE 475
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 367 PTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ 416
PT KC C+P + G C + CE C +GG C+ + C+C G+ G C+
Sbjct: 427 PTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK-CLCKKGYLGPQCE 475
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC----TCLNGD---SGPKCMCSPGYS 504
S+C C NG C+ T KC CSPG+ G C T C +G KC+C GY
Sbjct: 414 SECSRLCRNGYCTPTG---KCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYL 470
Query: 505 GKKCD 509
G +C+
Sbjct: 471 GPQCE 475
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 488 CLNGDSGP--KCMCSPGYSGKKCDTC----TCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C NG P KC CSPG+ G C T C +GG C+ + N C C Y G +CE
Sbjct: 420 CRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCV---RPNKCLCKKGYLGPQCE 475
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 449 CQYSQCKNYCVNGECSITDSGPKC-MCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK 507
C Y K C EC +GP C C Y G+ + L G C P S
Sbjct: 306 CVYDNSKLTC---ECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIG 362
Query: 508 CDTCT-----CLNGGTCIPNSKNNV-CKCPSQYTGRRCE 540
+ C C NGGTC NNV C CP+ YTG CE
Sbjct: 363 TNVCDNELLHCQNGGTC----HNNVRCLCPAAYTGILCE 397
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 17 NLKTVL--SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL-NTGLNE 73
N +TVL L+ P G+AVD G +Y D G NN +V G K +T+L TGLN+
Sbjct: 97 NNQTVLPFDGLNYPEGLAVDTQGA-VYVADRG----NNRVVKLAAGSKTQTVLPFTGLND 151
Query: 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124
P +A++ SG ++ T+ R+ + N+ L +I P GI +D
Sbjct: 152 PDGVAVDN-SGNVYVTDTD-NNRVVKLEAESNNQVVLPFTDITAPWGIAVD 200
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 440 CPKFYYGKNCQYSQCKNYCV--NGECSITDSGPKCMCSPGYSGKKCDTCT----CLNG-- 491
C + + G C + C+ C +G C + C C G+ G CD C C++G
Sbjct: 54 CMEGWMGPECNRAICRQGCSPKHGSCKLPGD---CRCQYGWQGLYCDKCIPHPGCVHGIC 110
Query: 492 DSGPKCMCSPGYSGKKCDT--------CTCLNGGTCIPNSKNNV-CKCPSQYTGRRCE 540
+ +C+C + G+ CD CLNGGTC + C CP Y+G CE
Sbjct: 111 NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 56/141 (39%), Gaps = 17/141 (12%)
Query: 321 CEFDDDFDPHCICQEN-----FYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAP 375
C DDF H C +N G + N ++C QG C P + C C
Sbjct: 34 CRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAIC---RQG-CSPKHGSCKLPGDCRCQY 89
Query: 376 SYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNL-----KCQNGGVCV 430
+ G C+ I C +G C Q C+C + G C + LN C NGG C
Sbjct: 90 GWQGLYCDKCIPHPGCVHG-ICNEPWQ-CLCETNWGGQLCDKDLNYCGTHQPCLNGGTCS 147
Query: 431 NKTTG-LECDCPKFYYGKNCQ 450
N +C CP+ Y G NC+
Sbjct: 148 NTGPDKYQCSCPEGYSGPNCE 168
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 499 CSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPN 558
C G+ G +C+ C G C P K+ CK P C C G +KC P+
Sbjct: 54 CMEGWMGPECNRAICRQG--CSP--KHGSCKLPGD-----CRCQYGWQ--GLYCDKCIPH 102
Query: 559 YCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCV 618
+G C C C + G+ C + + H C N G CS + K C+C
Sbjct: 103 PGCVHGICNEPW---QCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCP 159
Query: 619 NGWSGITCS 627
G+SG C
Sbjct: 160 EGYSGPNCE 168
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Query: 575 CKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV---S 631
C+C + G C + P C + G+C+ Q C C W G C + +
Sbjct: 85 CRCQYGWQGLYCDKCIPHPGCVH-----GICNEPWQ----CLCETNWGGQLCDKDLNYCG 135
Query: 632 CAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
C NGGTC + PD K C CP GY+G C+
Sbjct: 136 THQPCLNGGTCS----NTGPD-KYQCSCPEGYSGPNCE 168
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 524 KNNVCKCPSQYTGRRCECAVGDTSCASLANK-CTPNYCSNNGTCVLIEGKPSCKCLPPYS 582
KN + Q RC+C D C LA++ C N C + G C+ +EG C C Y+
Sbjct: 16 KNEIWYRTEQAAVARCQCKGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYT 75
Query: 583 GKQC 586
G C
Sbjct: 76 GPFC 79
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 493 SGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
GP C + + C T CL+GG C+ + +C CP YTG C+
Sbjct: 34 KGPDAHCQ-RLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCD 80
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYS--------QCKNYCVNGECSITDS 468
QC C NGG+C + EC C + GKNC+ +CK +C G DS
Sbjct: 50 QCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTG----ADS 105
Query: 469 GPKCMCSPGY 478
C C+ GY
Sbjct: 106 KVLCSCTTGY 115
>pdb|1XDT|R Chain R, Complex Of Diphtheria Toxin And Heparin-Binding Epidermal
Growth Factor
Length = 79
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 455 KNYCVNGECSITDS--GPKCMCSPGYSGKKC 483
K++C++GEC P C+C PGY G++C
Sbjct: 45 KDFCIHGECKYVKELRAPSCICHPGYHGERC 75
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNN- 563
G +C + C NGG+C ++ +C C + GR CE D N YCS++
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 106
Query: 564 GTCVLIEGKPSCKCLPPYS 582
GT K SC+C YS
Sbjct: 107 GT------KRSCRCHEGYS 119
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ------------CKNYCVNGECS 464
QC + CQNGG C ++ C C + G+NC+ + C+ YC +
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--- 105
Query: 465 ITDSGPKCMCSPGYS 479
T + C C GYS
Sbjct: 106 -TGTKRSCRCHEGYS 119
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 337 FYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR-----ICENKC 391
F+ +Y + + PC N G C L +Y C C P++ G CE+ IC N+
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQ----SYICFCLPAFEGRNCETHKDDQLICVNE- 94
Query: 392 HNGG------TCIATTQTCVCPPGFT 411
NGG T ++C C G++
Sbjct: 95 -NGGCEQYCSDHTGTKRSCRCHEGYS 119
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNN- 563
G +C + C NGG+C ++ +C C + GR CE D N YCS++
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 106
Query: 564 GTCVLIEGKPSCKCLPPYS----GKQCTEREDSP 593
GT K SC+C YS G CT + P
Sbjct: 107 GT------KRSCRCHEGYSLLADGVSCTPTVEYP 134
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ------------CKNYCVNGECS 464
QC + CQNGG C ++ C C + G+NC+ + C+ YC +
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--- 105
Query: 465 ITDSGPKCMCSPGYS 479
T + C C GYS
Sbjct: 106 -TGTKRSCRCHEGYS 119
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNN- 563
G +C + C NGG+C ++ +C C + GR CE D N YCS++
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 106
Query: 564 GTCVLIEGKPSCKCLPPYS----GKQCTEREDSP 593
GT K SC+C YS G CT + P
Sbjct: 107 GT------KRSCRCHEGYSLLADGVSCTPTVEYP 134
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ------------CKNYCVNGECS 464
QC + CQNGG C ++ C C + G+NC+ + C+ YC +
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--- 105
Query: 465 ITDSGPKCMCSPGYS 479
T + C C GYS
Sbjct: 106 -TGTKRSCRCHEGYS 119
>pdb|3BT1|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
pdb|3BT2|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 135
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 511 CTCLNGGTCIPN---SKNNVCKCPSQYTGRRCE 540
C CLNGGTC+ N S + C CP ++ G+ CE
Sbjct: 13 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 45
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNN- 563
G +C + C NGG+C ++ +C C + GR CE D N YCS++
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 106
Query: 564 GTCVLIEGKPSCKCLPPYS----GKQCTEREDSP 593
GT K SC+C YS G CT + P
Sbjct: 107 GT------KRSCRCHEGYSLLADGVSCTPTVEYP 134
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ------------CKNYCVNGECS 464
QC + CQNGG C ++ C C + G+NC+ + C+ YC +
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--- 105
Query: 465 ITDSGPKCMCSPGYS 479
T + C C GYS
Sbjct: 106 -TGTKRSCRCHEGYS 119
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 337 FYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR-----ICENKC 391
F+ +Y + + PC N G C L +Y C C P++ G CE+ IC N+
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQ----SYICFCLPAFEGRNCETHKDDQLICVNE- 94
Query: 392 HNGG------TCIATTQTCVCPPGFT 411
NGG T ++C C G++
Sbjct: 95 -NGGCEQYCSDHTGTKRSCRCHEGYS 119
>pdb|3U73|A Chain A, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
Length = 132
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 511 CTCLNGGTCIPN---SKNNVCKCPSQYTGRRCE 540
C CLNGGTC+ N S + C CP ++ G+ CE
Sbjct: 11 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 43
>pdb|2FD6|A Chain A, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 122
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 511 CTCLNGGTCIPN---SKNNVCKCPSQYTGRRCE 540
C CLNGGTC+ N S + C CP ++ G+ CE
Sbjct: 1 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 33
>pdb|1URK|A Chain A, Solution Structure Of The Amino Terminal Fragment Of
Urokinase-Type Plasminogen Activator
Length = 130
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 511 CTCLNGGTCIPN---SKNNVCKCPSQYTGRRCE 540
C CLNGGTC+ N S + C CP ++ G+ CE
Sbjct: 6 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 38
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY--------SQCKNYCVNGECSITDS 468
QC C NGG+C EC C + GKNC+ +CK +C G DS
Sbjct: 50 QCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTG----ADS 105
Query: 469 GPKCMCSPGY 478
C C+ GY
Sbjct: 106 KVLCSCTTGY 115
>pdb|2I9A|A Chain A, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|B Chain B, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|C Chain C, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|D Chain D, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9B|A Chain A, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|B Chain B, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|C Chain C, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|D Chain D, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 145
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 511 CTCLNGGTCIPN---SKNNVCKCPSQYTGRRCE 540
C CLNGGTC+ N S + C CP ++ G+ CE
Sbjct: 13 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 45
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 636 CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
CFNGGTC++ Y D +C CP G+AG C+
Sbjct: 56 CFNGGTCQQALYFSD----FVCQCPEGFAGKSCE 85
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 506 KKCDTCTCLNGGTCIPN--SKNNVCKCPSQYTGRRCE 540
K C C NGGTC + VC+CP + G+ CE
Sbjct: 49 KSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 388 ENKCHNGGTCIATTQ----TCVCPPGFTGDTCQ 416
E +C NGGTC C CP GF G +C+
Sbjct: 53 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNN- 563
G +C + C NGG+C ++ +C C + GR CE D N YCS++
Sbjct: 6 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT 65
Query: 564 GTCVLIEGKPSCKCLPPYS----GKQCTEREDSP 593
GT K SC+C YS G CT + P
Sbjct: 66 GT------KRSCRCHEGYSLLADGVSCTPTVEYP 93
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ------------CKNYCVNGECS 464
QC + CQNGG C ++ C C + G+NC+ + C+ YC +
Sbjct: 8 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--- 64
Query: 465 ITDSGPKCMCSPGYS 479
T + C C GYS
Sbjct: 65 -TGTKRSCRCHEGYS 78
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ 416
C+ C C NGG C + C CP GF G C+
Sbjct: 146 CQQAECPGGCRNGGFC-NERRICECPDGFHGPHCE 179
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 625 TCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
TC ++ C C NGG C E+ IC CP G+ G C+
Sbjct: 145 TC-QQAECPGGCRNGGFCNERR---------ICECPDGFHGPHCE 179
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 414 TCQQC-LNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
TCQQ C+NGG C + C+CP ++G +C+
Sbjct: 145 TCQQAECPGGCRNGGFCNERRI---CECPDGFHGPHCE 179
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ 416
C+ C C NGG C + C CP GF G C+
Sbjct: 146 CQQAECPGGCRNGGFC-NERRICECPDGFHGPHCE 179
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 625 TCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
TC ++ C C NGG C E+ IC CP G+ G C+
Sbjct: 145 TC-QQAECPGGCRNGGFCNERR---------ICECPDGFHGPHCE 179
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 414 TCQQC-LNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
TCQQ C+NGG C + C+CP ++G +C+
Sbjct: 145 TCQQAECPGGCRNGGFCNERRI---CECPDGFHGPHCE 179
>pdb|4EAM|A Chain A, 1.70a Resolution Structure Of Apo Beta-Glycosidase (W33g)
From Sulfolobus Solfataricus
pdb|4EAM|B Chain B, 1.70a Resolution Structure Of Apo Beta-Glycosidase (W33g)
From Sulfolobus Solfataricus
pdb|4EAN|A Chain A, 1.75a Resolution Structure Of Indole Bound
Beta-Glycosidase (W33g) From Sulfolobus Solfataricus
pdb|4EAN|B Chain B, 1.75a Resolution Structure Of Indole Bound
Beta-Glycosidase (W33g) From Sulfolobus Solfataricus
Length = 489
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 98 SGASIDGKNKFNLVDNNIQWPTGIT-------IDYPSQRLYWADPKARTIESINLNG 147
SGA + G ++L DN +W +G + +DY ++RLYW P A I NG
Sbjct: 415 SGADVRGYLHWSLADN-YEWASGFSMRFGLLKVDYNTKRLYWR-PSALVYREIATNG 469
>pdb|1GOW|A Chain A, Beta-Glycosidase From Sulfolobus Solfataricus
pdb|1GOW|B Chain B, Beta-Glycosidase From Sulfolobus Solfataricus
Length = 489
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 98 SGASIDGKNKFNLVDNNIQWPTGIT-------IDYPSQRLYWADPKARTIESINLNG 147
SGA + G ++L DN +W +G + +DY ++RLYW P A I NG
Sbjct: 415 SGADVRGYLHWSLADN-YEWASGFSMRFGLLKVDYNTKRLYWR-PSALVYREIATNG 469
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTGDTCQ 416
CE C+ G+CI T+ C+C PG++G TC+
Sbjct: 188 CEEMCYGHGSCINGTK-CICDPGYSGPTCK 216
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 478 YSGKKCDTC-----TCLNGDSGPKCMCSPGYSGKKCDTCT 512
Y G +C+ +C+NG KC+C PGYSG C T
Sbjct: 183 YIGPQCEEMCYGHGSCING---TKCICDPGYSGPTCKIST 219
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTGDTCQ 416
CE C+ G+CI T+ C+C PG++G TC+
Sbjct: 188 CEEMCYGHGSCINGTK-CICDPGYSGPTCK 216
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 478 YSGKKCDTC-----TCLNGDSGPKCMCSPGYSGKKCDTCT 512
Y G +C+ +C+NG KC+C PGYSG C T
Sbjct: 183 YIGPQCEEMCYGHGSCING---TKCICDPGYSGPTCKIST 219
>pdb|1UWQ|A Chain A, Structure Of Beta-glycosidase From Sulfolobus Solfataricus
pdb|1UWQ|B Chain B, Structure Of Beta-glycosidase From Sulfolobus Solfataricus
pdb|1UWR|A Chain A, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With 2-Deoxy-2-Fluoro-Galactose
pdb|1UWR|B Chain B, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With 2-Deoxy-2-Fluoro-Galactose
pdb|1UWS|A Chain A, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With 2-Deoxy-2-Fluoro-Glucose
pdb|1UWS|B Chain B, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With 2-Deoxy-2-Fluoro-Glucose
pdb|1UWT|A Chain A, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With D-Galactohydroximo-1,5-Lactam
pdb|1UWT|B Chain B, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With D-Galactohydroximo-1,5-Lactam
pdb|1UWU|A Chain A, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With D-Glucohydroximo-1,5-Lactam
pdb|1UWU|B Chain B, Structure Of Beta-Glycosidase From Sulfolobus Solfataricus
In Complex With D-Glucohydroximo-1,5-Lactam
pdb|2CEQ|A Chain A, Beta-Glycosidase From Sulfolobus Solfataricus In Complex
With Glucoimidazole
pdb|2CEQ|B Chain B, Beta-Glycosidase From Sulfolobus Solfataricus In Complex
With Glucoimidazole
pdb|2CER|A Chain A, Beta-Glycosidase From Sulfolobus Solfataricus In Complex
With Phenethyl-Substituted Glucoimidazole
pdb|2CER|B Chain B, Beta-Glycosidase From Sulfolobus Solfataricus In Complex
With Phenethyl-Substituted Glucoimidazole
Length = 489
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 98 SGASIDGKNKFNLVDNNIQWPTGIT-------IDYPSQRLYWADPKARTIESINLNG 147
SGA + G ++L DN +W +G + +DY ++RLYW P A I NG
Sbjct: 415 SGADVRGYLHWSLADN-YEWASGFSMRFGLLKVDYNTKRLYWR-PSALVYREIATNG 469
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 352 CLNQGMCY--PDLTHPEPTYKCHCAPSYTGARCESRI 386
C+N G C+ DL++P Y C C P +TGARC +
Sbjct: 14 CVNGGECFMVKDLSNP-SRYLCKCQPGFTGARCTENV 49
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 391 CHNGGTCIATTQT-------CVCPPGFTGDTCQQCLNLKCQN 425
C NGG C C C PGFTG C + + +K QN
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN 55
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 352 CLNQGMCY--PDLTHPEPTYKCHCAPSYTGARCESRI 386
C+N G C+ DL++P Y C C P +TGARC +
Sbjct: 16 CVNGGECFMVKDLSNP-SRYLCKCQPGFTGARCTENV 51
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 391 CHNGGTCIATTQT-------CVCPPGFTGDTCQQCLNLKCQN 425
C NGG C C C PGFTG C + + +K QN
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN 57
>pdb|3M6Y|A Chain A, Structure Of 4-Hydroxy-2-Oxoglutarate Aldolase From
Bacillus Cereus At 1.45 A Resolution.
pdb|3M6Y|B Chain B, Structure Of 4-Hydroxy-2-Oxoglutarate Aldolase From
Bacillus Cereus At 1.45 A Resolution.
pdb|3M6Y|C Chain C, Structure Of 4-Hydroxy-2-Oxoglutarate Aldolase From
Bacillus Cereus At 1.45 A Resolution.
pdb|3M6Y|D Chain D, Structure Of 4-Hydroxy-2-Oxoglutarate Aldolase From
Bacillus Cereus At 1.45 A Resolution
Length = 275
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 171 DNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVL 208
+NLYF + NI K G NVLANN+ A D+
Sbjct: 16 ENLYFQSNAXTNIQKRFYKGRVALNVLANNIENAKDIF 53
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 515 NGGTCIPNSKNNVCKCPSQYTGRRCECA-VGDTSCASL------ANKCTPNYCSNNGTCV 567
N G PN+K N C Y R + D +C L C P CS +G CV
Sbjct: 75 NWGDGEPNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECV 134
Query: 568 LIEGKPSCKCLPPYSGKQCTEREDSP 593
I +C C Y G QC + P
Sbjct: 135 EIINNYTCNCDVGYYGPQCQFVQVDP 160
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 504 SGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
G +C++ CLNGG+C + + C CP + G+ CE
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 416 QQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
QC + C NGG C + EC CP + GKNC+
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
>pdb|1YUF|A Chain A, Type Alpha Transforming Growth Factor, Nmr, 16 Models
Without Energy Minimization
pdb|1YUG|A Chain A, Type Alpha Transforming Growth Factor, Nmr, 15 Models
After Ecepp3 ENERGY MINIMIZATION
Length = 50
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 635 FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
FCF+G TCR L + KP C+C GY G RC+
Sbjct: 15 FCFHG-TCR----FLVQEDKPACVCHSGYVGARCE 44
>pdb|3U7U|G Chain G, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|H Chain H, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|I Chain I, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|J Chain J, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|K Chain K, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|L Chain L, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 55
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 513 CLNGGTC-----IPNSKNNVCKCPSQYTGRRCE 540
C+NGG C + N +CKCP+++TG RC+
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQ 48
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 627 SERVSCAH----FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672
S V CA FC NGG C +P + +C CP + G RCQ V
Sbjct: 3 SHLVKCAEKEKTFCVNGGECFMVKDLSNPS-RYLCKCPNEFTGDRCQNYV 51
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNL--YWTDAGGRSSNNIMVST 57
V+++ D R A +W+GK L Y TDA G+ N I+V
Sbjct: 62 VVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEA 100
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNL--YWTDAGGRSSNNIMVST 57
V+++ D R A +W+GK L Y TDA G+ N I+V
Sbjct: 62 VVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEA 100
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNL--YWTDAGGRSSNNIMVST 57
V+++ D R A +W+GK L Y TDA G+ N I+V
Sbjct: 62 VVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEA 100
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ----------CKNYCVNGECSITD 467
C++ C + G C + G C C Y G NC+ ++ C+++C+ G+ S T
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT- 66
Query: 468 SGPKCMCSPGY 478
C C+ GY
Sbjct: 67 ----CSCAQGY 73
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGT------CIATTQ-- 402
PCL+ G C + Y C C+P Y G+ CE + +N+CH T C+ +
Sbjct: 12 PCLHNGSCQDSIW----GYTCTCSPGYEGSNCE--LAKNECHPERTDGCQHFCLPGQESY 65
Query: 403 TCVCPPGF-TGDTCQQCL 419
TC C G+ G+ +QC+
Sbjct: 66 TCSCAQGYRLGEDHKQCV 83
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 460 NGECSITDSGPKCMCSPGYSGKKCDTCT--------------CLNGDSGPKCMCSPGY 503
NG C + G C CSPGY G C+ CL G C C+ GY
Sbjct: 16 NGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGY 73
>pdb|3LTF|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|B Chain B, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
Length = 58
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 352 CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICEN 389
CLN C+ P Y C CA + G RCE + +N
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDN 53
>pdb|1UWI|A Chain A, Crystal Structure Of Mutated Beta-Glycosidase From
Sulfolobus Solfataricus, Working At Moderate Temperature
pdb|1UWI|B Chain B, Crystal Structure Of Mutated Beta-Glycosidase From
Sulfolobus Solfataricus, Working At Moderate Temperature
pdb|1UWI|C Chain C, Crystal Structure Of Mutated Beta-Glycosidase From
Sulfolobus Solfataricus, Working At Moderate Temperature
pdb|1UWI|D Chain D, Crystal Structure Of Mutated Beta-Glycosidase From
Sulfolobus Solfataricus, Working At Moderate Temperature
Length = 489
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 98 SGASIDGKNKFNLVDNNIQWPTGIT-------IDYPSQRLYWADPKARTIESINLNG 147
SGA + G ++L DN +W +G + +DY ++RLYW P + I NG
Sbjct: 415 SGADVRGYLHWSLADN-YEWASGFSMRFGLLKVDYNTKRLYWR-PSSLVYREIATNG 469
>pdb|1IOX|A Chain A, Nmr Structure Of Human Betacellulin-2
pdb|1IP0|A Chain A, Nmr Structure Of Human Betacellulin-2
Length = 50
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 453 QCKNYCVNGECS--ITDSGPKCMCSPGYSGKKCD 484
Q K+YC+ G C + + P C+C GY G +C+
Sbjct: 11 QYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCE 44
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 380 ARCESRICEN-KCHNGGTCIATTQ--TCVCPPGFTGDTCQQCLN 420
A C + C N C G C+ T TC C PGF+G C+Q +N
Sbjct: 115 ALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
N+C N C N+ TC+ G+ C C+P Y G C
Sbjct: 2 VNECISNPCQNDATCLDQIGEFQCICMPGYEGVYC 36
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 507 KCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNN-GT 565
+C + C NGG+C ++ +C C + GR CE D N YCS++ GT
Sbjct: 2 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 61
Query: 566 CVLIEGKPSCKCLPPYS----GKQCTEREDSP 593
K SC+C YS G CT + P
Sbjct: 62 ------KRSCRCHEGYSLLADGVSCTPTVEYP 87
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ------------CKNYCVNGECS 464
QC + CQNGG C ++ C C + G+NC+ + C+ YC +
Sbjct: 2 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--- 58
Query: 465 ITDSGPKCMCSPGYS 479
T + C C GYS
Sbjct: 59 -TGTKRSCRCHEGYS 72
>pdb|3C9A|C Chain C, High Resolution Crystal Structure Of Argos Bound To The
Egf Domain Of Spitz
pdb|3C9A|D Chain D, High Resolution Crystal Structure Of Argos Bound To The
Egf Domain Of Spitz
pdb|3CA7|A Chain A, High Resolution Crystal Structure Of The Egf Domain Of
Spitz
pdb|3LTG|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
Length = 52
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 352 CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
CLN C+ P Y C CA + G RCE +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 507 KCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNN-GT 565
+C + C NGG+C ++ +C C + GR CE D N YCS++ GT
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 566 CVLIEGKPSCKCLPPYS----GKQCTEREDSP 593
K SC+C YS G CT + P
Sbjct: 61 ------KRSCRCHEGYSLLADGVSCTPTVEYP 86
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ------------CKNYCVNGECS 464
QC + CQNGG C ++ C C + G+NC+ + C+ YC +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--- 57
Query: 465 ITDSGPKCMCSPGYS 479
T + C C GYS
Sbjct: 58 -TGTKRSCRCHEGYS 71
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 507 KCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNN-GT 565
+C + C NGG+C ++ +C C + GR CE D N YCS++ GT
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 60
Query: 566 CVLIEGKPSCKCLPPYS 582
K SC+C YS
Sbjct: 61 ------KRSCRCHEGYS 71
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ------------CKNYCVNGECS 464
QC + CQNGG C ++ C C + G+NC+ + C+ YC +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--- 57
Query: 465 ITDSGPKCMCSPGYS 479
T + C C GYS
Sbjct: 58 -TGTKRSCRCHEGYS 71
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTS 547
G +C + C NGG+C ++ +C C + GR CE D S
Sbjct: 3 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGS 45
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT--ERE----DSPSCHNYCDNAGLC 605
++C + C N G C G+ +C CL + GK C R+ D+ C +C
Sbjct: 3 GDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFC------ 56
Query: 606 SYSKQGKPVCTCVNGWS 622
+ +Q VC+C G++
Sbjct: 57 -HEEQNSVVCSCARGYT 72
>pdb|1P9J|A Chain A, Solution Structure And Dynamics Of The EgfTGF-Alpha
Chimera T1e
Length = 54
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 559 YCSNNGTCVLIEG--KPSCKCLPPYSGKQCTERE 590
YC ++G C+ IE K +C C+ Y G++C R+
Sbjct: 15 YCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 48
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
G +C + C NGG+C ++ +C C + GR CE
Sbjct: 3 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 380 ARCESRICEN-KCHNGGTCIATTQ--TCVCPPGFTGDTCQQCL 419
A C + C N C G C+ T TC C PGF+G C+Q +
Sbjct: 115 ALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
>pdb|1MOX|C Chain C, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|1MOX|D Chain D, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|2TGF|A Chain A, The Solution Structure Of Human Transforming Growth Factor
Alpha
pdb|3TGF|A Chain A, The Solution Structure Of Human Transforming Growth Factor
Alpha
pdb|4TGF|A Chain A, Solution Structures Of Human Transforming Growth Factor
Alpha Derived From 1H Nmr Data
pdb|3E50|C Chain C, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|D Chain D, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 50
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 631 SCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
S FCF+G TCR L + KP C+C GY G RC+
Sbjct: 11 SHTQFCFHG-TCR----FLVQEDKPACVCHSGYVGARCE 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,131,248
Number of Sequences: 62578
Number of extensions: 1122270
Number of successful extensions: 3796
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 2481
Number of HSP's gapped (non-prelim): 929
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)