RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6570
(713 letters)
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 200 bits (509), Expect = 3e-59
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 15/197 (7%)
Query: 2 ASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR 61
AS+ G T + + +L P G+A+D +G+ ++WTD+ I V+ ++G
Sbjct: 63 ASLHGGEPTTI--------IRQDLGSPEGIALDHLGRTIFWTDSQLDR---IEVAKMDGT 111
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGI-KPRISGASIDGKNKFNLVDNNIQWPTG 120
++R L +TGL P I +P+ G ++WT+ P+I + +DG N+ L +N+ P G
Sbjct: 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG 171
Query: 121 ITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRT 180
+T D S +L W D E +N R V P+ + + NLY++ ++T
Sbjct: 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSYGKNLYYTDWKT 228
Query: 181 NNILKINKFGNSDFNVL 197
N+++ ++ + + +
Sbjct: 229 NSVIAMDLAISKEMDTF 245
Score = 123 bits (310), Expect = 1e-31
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 11/187 (5%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
+ G+A D V K +YWTD S I ++L G + T++ L P IAL
Sbjct: 30 FLHIPAKVIIGLAFDCVDKVVYWTDISEPS---IGRASLHGGEPTTIIRQDLGSPEGIAL 86
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD--PKA 137
+ L +FWT+ + RI A +DG + L D + P GI D LYW D
Sbjct: 87 DHLGRTIFWTDSQLD-RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145
Query: 138 RTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFN 195
IE+ +++G +R ++ +DN P L F L + T+ +N
Sbjct: 146 PKIETSHMDGTNRRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN-PAQPGRR 202
Query: 196 VLANNLN 202
+ L
Sbjct: 203 KVLEGLQ 209
Score = 110 bits (277), Expect = 3e-27
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 7/158 (4%)
Query: 17 NLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPY 75
+ + L +PRG+ D V NLYWTD R + I S ++G +R L L P
Sbjct: 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTNRRILAQDNLGLPN 170
Query: 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP 135
+ + S ++ W + G R + + ++ +Q+P +T + LY+ D
Sbjct: 171 GLTFDAFSSQLCWVDAGTH-RAECLNPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDW 226
Query: 136 KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNL 173
K ++ +++L +H + Y + +
Sbjct: 227 KTNSVIAMDLAISKEMDTFHPHKQT-RLYGITIALSQC 263
Score = 98.0 bits (244), Expect = 7e-23
Identities = 36/188 (19%), Positives = 76/188 (40%), Gaps = 17/188 (9%)
Query: 37 GKNLYWTDAGGRSSNNIMVSTLEGRK-----KRTLLNTGLNEPYDIALEPLSGRMFWTEL 91
G +L + + I LE + L+ +A + + ++WT++
Sbjct: 1 GTHLLFAQ-----TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI 55
Query: 92 GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF 151
+P I AS+ G ++ ++ P GI +D+ + ++W D + IE ++G R
Sbjct: 56 S-EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114
Query: 152 VVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNN--ILKINKFGNSDFNVLANNLNRASDV 207
V++ T P + NLY++ + +N I + G + + +NL + +
Sbjct: 115 VLFDT--GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL 172
Query: 208 LILQENKQ 215
+ Q
Sbjct: 173 TFDAFSSQ 180
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 199 bits (507), Expect = 2e-58
Identities = 83/258 (32%), Positives = 130/258 (50%), Gaps = 14/258 (5%)
Query: 3 SISSGNVTRVKREMNLKTVL-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR 61
I S + R + TV+ ++ P G+AVDW+ N+YWTD+ + + V+ +G
Sbjct: 53 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT---VSVADTKGV 109
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGI 121
K++TL ++P I ++P+ G M+WT+ G +I ++G + ++LV NIQWP GI
Sbjct: 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169
Query: 122 TIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTN 181
T+D S RLYW D K +I SI++NG +R + E P+ L VFED ++++
Sbjct: 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE 229
Query: 182 NILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQ---SALCINLP 238
I N+ SD N+LA NL D+++ Q N C+ LC+ P
Sbjct: 230 AIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAP 288
Query: 239 ------SSHTCLCPDHLT 250
TC CPD +
Sbjct: 289 QINPHSPKFTCACPDGML 306
Score = 74.7 bits (183), Expect = 1e-14
Identities = 30/181 (16%), Positives = 77/181 (42%), Gaps = 12/181 (6%)
Query: 40 LYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISG 99
L++T+ + + TL+ + +L+ L + E S R++W++L + I
Sbjct: 4 LFFTN-----RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQR-MICS 56
Query: 100 ASIDGKNKFN----LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155
+D + + ++ +IQ P G+ +D+ +YW D T+ + G R ++
Sbjct: 57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 116
Query: 156 TEDNGYKPYKLEVFEDNLYFSTYRTNN-ILKINKFGNSDFNVLANNLNRASDVLILQENK 214
+ + ++ +Y++ + T I K G ++++ N+ + + + +
Sbjct: 117 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 176
Query: 215 Q 215
+
Sbjct: 177 R 177
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 191 bits (486), Expect = 2e-55
Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)
Query: 19 KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78
V+S L P G+A DW+G+ LYWTD+ I VS L+G ++ L L++P IA
Sbjct: 72 NVVVSGLLSPDGLACDWLGEKLYWTDSETNR---IEVSNLDGSLRKVLFWQELDQPRAIA 128
Query: 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR 138
L+P SG M+WT+ G P+I A +DG ++F ++++ I WP G+T+DY Q+LYWAD K
Sbjct: 129 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188
Query: 139 TIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLA 198
I NL+G +R V + P+ L +FED LY++ + T++IL NK+ +
Sbjct: 189 FIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246
Query: 199 NNLNRASDVLILQENKQAH-NVTNHCDDKPCHQSALCINLPSSHTCLCPDHLT 250
+++ D+ + +Q + D+ C L + + C CP +
Sbjct: 247 SDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK 299
Score = 104 bits (260), Expect = 1e-24
Identities = 54/281 (19%), Positives = 103/281 (36%), Gaps = 18/281 (6%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLLNTGLNEPYDIA 78
V+ L D V + +YW+D + I + + ++ +GL P +A
Sbjct: 29 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEA---IKRTEFNKTESVQNVVVSGLLSPDGLA 85
Query: 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD-PKA 137
+ L +++WT+ RI +++DG + L + P I +D S +YW D +
Sbjct: 86 CDWLGEKLYWTDSETN-RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV 144
Query: 138 RTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFN 195
IE ++G RF++ Y P L + E LY++ + N I K N G +
Sbjct: 145 PKIERAGMDGSSRFII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA 202
Query: 196 VLANNLNRASDVLILQEN----KQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTE 251
V+ +L + + ++ + + C+ + S +
Sbjct: 203 VVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQR 262
Query: 252 ELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLT 292
+ N T+ C C + + C CP +
Sbjct: 263 QPNATNPCGI----DNGGCSHLCLMSPVKPFYQCACPTGVK 299
Score = 83.2 bits (205), Expect = 2e-17
Identities = 31/170 (18%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Query: 49 SSNNIMVSTLE-GRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107
+ ++ + G++ T++ GL + + G ++W+++ + I +
Sbjct: 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE-AIKRTEFNKTES 69
Query: 108 F-NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKL 166
N+V + + P G+ D+ ++LYW D + IE NL+G R V++ E + + L
Sbjct: 70 VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIAL 129
Query: 167 EVFEDNLYFSTYRTN-NILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215
+ +Y++ + I + G+S F ++ + + + + + E ++
Sbjct: 130 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK 179
Score = 29.7 bits (66), Expect = 3.0
Identities = 11/80 (13%), Positives = 18/80 (22%), Gaps = 20/80 (25%)
Query: 440 CPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMC 499
+ + + NG CS C +C C
Sbjct: 254 DIHAFSQQRQPNATNPCGIDNGGCS-------------------HLCLMSPVKPFYQCAC 294
Query: 500 SPGYSGKKCDTCTCLNGGTC 519
G + TC +G +
Sbjct: 295 PTGVK-LLENGKTCKDGNSH 313
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 185 bits (471), Expect = 1e-52
Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 6/236 (2%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
V + L P G+AVDWV LYWTD+G ++ I V+ L+G ++ LL L +P IAL
Sbjct: 154 VSTGLESPGGLAVDWVHDKLYWTDSG---TSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G ++WT+ G PRI +S+DG + + D ++ WP G+TIDY +R+YW D K I
Sbjct: 211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
E NL+G R V P+ + VFED+LY++ + T +I NKF + ++ N
Sbjct: 271 ERANLDGSHRKAVIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNK 328
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVT 256
L+ D+ L +Q D+ + LC+ ++TC CP + +
Sbjct: 329 LHFPMDIHTLHPQRQPAGKNRCGDN-NGGCTHLCLPSGQNYTCACPTGFRKINSHA 383
Score = 50.5 bits (120), Expect = 1e-06
Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
P + +G A ++ E L + + +
Sbjct: 75 RPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFH----HRRELV 130
Query: 87 FWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146
FW+++ + RI A+++G N +V ++ P G+ +D+ +LYW D IE NL+
Sbjct: 131 FWSDVTLD-RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189
Query: 147 GKDRFVVYHTEDNGYKPYKLEVFEDNLYFS 176
G R V+ + L E +Y++
Sbjct: 190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWT 219
Score = 44.8 bits (105), Expect = 7e-05
Identities = 14/131 (10%), Positives = 28/131 (21%), Gaps = 2/131 (1%)
Query: 220 TNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNL 279
+C+ + C + + C C + + + + A C C N
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCT--NS 60
Query: 280 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYG 339
+ C C + S K ++ EN
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 340 TYCEKVNNSMC 350
+
Sbjct: 121 LDFHHRRELVF 131
Score = 35.1 bits (80), Expect = 0.082
Identities = 19/140 (13%), Positives = 32/140 (22%), Gaps = 12/140 (8%)
Query: 486 CTCLNGDSGPKCMCSPGY----SGKKCDTCT-CLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C +C C GY G+ C C G C C + +C
Sbjct: 15 QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG-------CTNSEGAFQCW 67
Query: 541 CAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCD 600
C G + I+ + Y+ ++
Sbjct: 68 CEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRR 127
Query: 601 NAGLCSYSKQGKPVCTCVNG 620
S + + +NG
Sbjct: 128 ELVFWSDVTLDRILRANLNG 147
Score = 31.3 bits (70), Expect = 1.0
Identities = 15/94 (15%), Positives = 23/94 (24%), Gaps = 15/94 (15%)
Query: 463 CSITDSGPKCMCSPGY----SGKKCDTCT-----------CLNGDSGPKCMCSPGYSGKK 507
C + +C C GY G+ C C N + +C C GY +
Sbjct: 17 CQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRP 76
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCEC 541
G + N +
Sbjct: 77 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTL 110
Score = 31.3 bits (70), Expect = 1.3
Identities = 17/126 (13%), Positives = 27/126 (21%), Gaps = 3/126 (2%)
Query: 317 NHGTCE---FDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHC 373
N+G C C C + T + + C +G C T+ E ++C C
Sbjct: 9 NNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWC 68
Query: 374 APSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKT 433
Y P + T +
Sbjct: 69 EAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE 128
Query: 434 TGLECD 439
D
Sbjct: 129 LVFWSD 134
Score = 30.5 bits (68), Expect = 1.8
Identities = 20/131 (15%), Positives = 27/131 (20%), Gaps = 18/131 (13%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYY----GKNCQY-SQCKNYCVNGECSITDSGPKC 472
C C ++C C Y G+ CQ ++C G CS C
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAE---EGYCS-----QGC 57
Query: 473 MCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPS 532
S G C C G S G + +
Sbjct: 58 TNSEGA-----FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLL 112
Query: 533 QYTGRRCECAV 543
Sbjct: 113 NNLENAIALDF 123
Score = 30.1 bits (67), Expect = 2.4
Identities = 21/142 (14%), Positives = 34/142 (23%), Gaps = 10/142 (7%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNY--CDNAGLCS---Y 607
C N C +I G C C Y ED +C + C G CS
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGY-----RLTEDGRTCQDVNECAEEGYCSQGCT 58
Query: 608 SKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVR 667
+ +G C C G+ + +
Sbjct: 59 NSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 668 CQTLVHYISKKQSYVNSHISSI 689
H+ + + + + I
Sbjct: 119 IALDFHHRRELVFWSDVTLDRI 140
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 179 bits (454), Expect = 4e-50
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 13/239 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ ++ P G+AVDW+ N+YWTD+ + V+ +G K++TL ++P I ++
Sbjct: 154 ISRDIQAPDGLAVDWIHSNIYWTDSV---LGTVSVADTKGVKRKTLFRENGSKPRAIVVD 210
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G M+WT+ G +I ++G + ++LV NIQWP GIT+D S RLYW D K +I
Sbjct: 211 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
SI++NG +R + E P+ L VFED ++++ I N+ SD N+LA N
Sbjct: 271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQ---SALCINLPS------SHTCLCPDHLT 250
L D+++ Q N C+ LC+ P TC CPD +
Sbjct: 331 LLSPEDMVLFHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 388
Score = 47.9 bits (113), Expect = 8e-06
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 67 LNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFN----LVDNNIQWPTGIT 122
L L + E S R++W++L + I +D + + ++ +IQ P G+
Sbjct: 107 LIPNLRNVVALDTEVASNRIYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 165
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFS 176
+D+ +YW D T+ + G R ++ + + ++ +Y++
Sbjct: 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219
Score = 38.3 bits (88), Expect = 0.008
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 3/130 (2%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLP 280
N C D S +C +L + CLCPD + P TC C NL
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDP-DTCSQLCV--NLE 57
Query: 281 SSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGT 340
+ C C + + + + K +A ++ N
Sbjct: 58 GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 117
Query: 341 YCEKVNNSMC 350
E +N +
Sbjct: 118 DTEVASNRIY 127
Score = 37.5 bits (86), Expect = 0.014
Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 11/148 (7%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKCDTCT----CLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542
C + G +C+C G+ C C + TC C + G +C+C
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-------LCVNLEGGYKCQCE 65
Query: 543 VGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNA 602
G + E + Y+ R N
Sbjct: 66 EGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 125
Query: 603 GLCSYSKQGKPVCTCVNGWSGITCSERV 630
S Q T ++ G++ + V
Sbjct: 126 IYWSDLSQRMICSTQLDRAHGVSSYDTV 153
Score = 35.2 bits (80), Expect = 0.072
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 6/120 (5%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC-VNGECSITDSGPKCMCS 475
+CL+ VC + G EC CP + + + + C CS C+
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS-----QLCVNL 56
Query: 476 PGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYT 535
G +C+ L+ + + + + +
Sbjct: 57 EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Score = 34.4 bits (78), Expect = 0.11
Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 8/118 (6%)
Query: 463 CSITDSGPKCMCSPGYSGKKCDTCTCLN-----GDSGPKCMCSPGYSGKKCDTCTCLNGG 517
C+ G +C+C G+ C ++ C+ G +C+ L+
Sbjct: 14 CNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH 73
Query: 518 TCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSC 575
T + V + R E + + + +
Sbjct: 74 TKACKA---VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYW 128
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 182 bits (463), Expect = 2e-49
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 8/230 (3%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
V + + P G+AVDWV +NLYWTD G ++ I V+ L G ++ L++ L EP I L+
Sbjct: 387 VTAQIAHPDGIAVDWVARNLYWTDTG---TDRIEVTRLNGTMRKILISEDLEEPRAIVLD 443
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G M+WT+ G P+I A++DG ++ LV+ ++ WP G+ +DY ++YW D K I
Sbjct: 444 PMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKI 503
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
E +N +G R V+ D + + D +Y++ ++ +I +++K V+ +
Sbjct: 504 EVMNTDGTGRRVLVE--DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAER-EVIIDQ 560
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLT 250
L + ++ + ++ C S LC+ P C CP
Sbjct: 561 LPDLMGLKATNVHRVIGSNPCAEENGGC--SHLCLYRPQGLRCACPIGFE 608
Score = 181 bits (461), Expect = 3e-49
Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 6/281 (2%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
V+S L P G+A DW+G+ LYWTD+ N I VS L+G ++ L L++P IAL
Sbjct: 78 VVVSGLLSPDGLACDWLGEKLYWTDSET---NRIEVSNLDGSLRKVLFWQELDQPRAIAL 134
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKART 139
+P SG M+WT+ G P+I A +DG ++F ++++ I WP G+T+DY Q+LYWAD K
Sbjct: 135 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194
Query: 140 IESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLAN 199
I NL+G +R V + P+ L +FED LY++ + T++IL NK+ + +
Sbjct: 195 IHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS 252
Query: 200 NLNRASDVLILQENKQAHNVTNHCDDK-PCHQSALCINLPSSHTCLCPDHLTEELNVTSG 258
++ D+ + +Q + D C L + + C CP + N +
Sbjct: 253 DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 312
Query: 259 KMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTS 299
K D +L + L + + +
Sbjct: 313 KDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353
Score = 79.5 bits (195), Expect = 1e-15
Identities = 31/164 (18%), Positives = 75/164 (45%), Gaps = 1/164 (0%)
Query: 53 IMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD 112
+V G++ T++ GL + + G ++W+++ + ++ N+V
Sbjct: 21 RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV 80
Query: 113 NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN 172
+ + P G+ D+ ++LYW D + IE NL+G R V++ E + + L+
Sbjct: 81 SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF 140
Query: 173 LYFSTYRTN-NILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215
+Y++ + I + G+S F ++ + + + + + E ++
Sbjct: 141 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK 184
Score = 31.7 bits (71), Expect = 0.94
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 465 ITDSGPKCMCSPGYSGKKCDTCT--CLNGDSGPKCMCSPGYSGKKCDTCTCL 514
+ + + ++ C+ CL G +C C G+ D TC+
Sbjct: 567 LKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFE-LISDMKTCI 617
Score = 30.6 bits (68), Expect = 2.0
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 443 FYYGKNCQYSQCKNYCVNGECS----ITDSGPKCMCSPGYSGKKCDTCTCL 489
+ NG CS G +C C G+ D TC+
Sbjct: 568 KATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFE-LISDMKTCI 617
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 179 bits (455), Expect = 2e-48
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 7/230 (3%)
Query: 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
+ P +++D + +YWT I V+ L+GR +L + P + + P
Sbjct: 386 NLEIQPYDLSIDIYSRYIYWTCEATNV---INVTRLDGRSVGVVLKGEQDRPRAVVVNPE 442
Query: 83 SGRMFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
G M++T L P+I A++DG + L + + P + +D +L+WAD R IE
Sbjct: 443 KGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIE 502
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
S +L+G +R V+ + N +P L VFE+ LY+ + I KI+ G + +
Sbjct: 503 SSDLSGANRIVLEDS--NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARI 560
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPS-SHTCLCPDHLT 250
+ SD+ ++E + C S +C+ + C CP HL
Sbjct: 561 AQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLV 610
Score = 173 bits (438), Expect = 5e-46
Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 10/229 (4%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
V L P G+AVDW+GKNLYW D G +N I VS L+G+ ++ L+ L+ P +AL+
Sbjct: 75 VEFGLDYPEGMAVDWLGKNLYWADTG---TNRIEVSKLDGQHRQVLVWKDLDSPRALALD 131
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P G M+WTE G KP+I A++DG + LV N+ G+TIDY +RLYW D I
Sbjct: 132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLI 190
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
ES N+ G +R V+ + P+ L ++D +Y++ + +I + NK + ++ +
Sbjct: 191 ESSNMLGLNREVIAD---DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGH 247
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLP-SSHTCLCPDH 248
L+ D+L+ ++Q+ + C LC+ +P C CP H
Sbjct: 248 LDYVMDILVFHSSRQSGWNECASSNGHCSH--LCLAVPVGGFVCGCPAH 294
Score = 104 bits (260), Expect = 2e-23
Identities = 48/291 (16%), Positives = 103/291 (35%), Gaps = 22/291 (7%)
Query: 14 REMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE 73
N+ L+ + + + D +YWTD ++ I + + G ++ GL+
Sbjct: 25 NNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT---ISRAFMNGSALEHVVEFGLDY 81
Query: 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA 133
P +A++ L ++W + G RI + +DG+++ LV ++ P + +D +YW
Sbjct: 82 PEGMAVDWLGKNLYWADTGTN-RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140
Query: 134 D-PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN--LYFSTYRTNNILKINKFG 190
+ I+ ++G +R + N + L + LY++ TN I N G
Sbjct: 141 EWGGKPKIDRAAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197
Query: 191 NSDFNVLANNLNRASDVLILQ-------ENKQAHNVTNHCDDKPCHQSALCINLP----S 239
+ V+A++L + Q ++++ N + ++
Sbjct: 198 -LNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256
Query: 240 SHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDH 290
H+ + C P C ++ C
Sbjct: 257 FHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAP 307
Score = 99.1 bits (246), Expect = 8e-22
Identities = 43/286 (15%), Positives = 102/286 (35%), Gaps = 26/286 (9%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGL------NEPY 75
+ +L + R + D + K LYW D N I + +G + T++ + + +PY
Sbjct: 336 IHSLRNVRAIDYDPLDKQLYWID---SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY 392
Query: 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD- 134
D++++ S ++WT I+ +DG++ ++ P + ++ +Y+ +
Sbjct: 393 DLSIDIYSRYIYWTCEA-TNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNL 451
Query: 135 -PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGN 191
++ IE L+G +R V++ + KP L + L+++ I + G
Sbjct: 452 QERSPKIERAALDGTEREVLFFS--GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509
Query: 192 SDFNVLANNLNRASDVLILQEN----KQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPD 247
+ + +N+ + + + + + + D + + +
Sbjct: 510 NRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAV 569
Query: 248 HLTEELNVTSGKMSCKVAPAR-TCYLDCNHGNLPSSHTCLCPDHLT 292
+ C + + C CP HL
Sbjct: 570 KELNLQEYRQHPCAQDNGGCSHICLV-----KGDGTTRCSCPMHLV 610
Score = 89.9 bits (222), Expect = 9e-19
Identities = 58/333 (17%), Positives = 110/333 (33%), Gaps = 36/333 (10%)
Query: 40 LYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRIS 98
L ++ +I +LE + TG+ E + + R++WT++ +K IS
Sbjct: 9 LLFSR-----RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLK-TIS 62
Query: 99 GASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED 158
A ++G ++V+ + +P G+ +D+ + LYWAD IE L+G+ R V+
Sbjct: 63 RAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK-- 120
Query: 159 NGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQA 216
+ P L + E +Y++ + + S+ L N+ RA+ + I ++
Sbjct: 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRL 180
Query: 217 -----------------HNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGK 259
N DD P H L + E N TSG+
Sbjct: 181 YWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239
Query: 260 MSCKVAPART---CYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDC 316
+ L + + C + L + L+
Sbjct: 240 NRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNA 299
Query: 317 NHGTCEFDD----DFDPHCICQENFYGTYCEKV 345
++ TC I + +
Sbjct: 300 DNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDI 332
Score = 67.5 bits (164), Expect = 7e-12
Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 15/194 (7%)
Query: 34 DWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR--TLLNTGLNEPYDIALEPLSGRMFWTEL 91
D + T + I ++ ++ L L I +PL +++W +
Sbjct: 300 DNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDS 359
Query: 92 GIKPRISGASIDGKNKFNLVDNNIQ------WPTGITIDYPSQRLYWADPKARTIESINL 145
I A DG F +V +++ P ++ID S+ +YW I L
Sbjct: 360 RQN-MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRL 418
Query: 146 NGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNN--ILKINKFGNSDFNVLANNL 201
+G+ VV +P + V + +YF+ + + I + G + + L
Sbjct: 419 DGRSVGVVLKG--EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGL 476
Query: 202 NRASDVLILQENKQ 215
++ + + +
Sbjct: 477 SKPIALALDSRLGK 490
Score = 34.4 bits (78), Expect = 0.15
Identities = 9/81 (11%), Positives = 18/81 (22%), Gaps = 4/81 (4%)
Query: 558 NYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
+ G + + E P + + +C G C+C
Sbjct: 546 DMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSC 605
Query: 618 VNGWS----GITCSERVSCAH 634
++C H
Sbjct: 606 PMHLVLLQDELSCGGTKHHHH 626
Score = 29.4 bits (65), Expect = 4.4
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 558 NYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
N S ++ + + + + + S + +C + LC G VC C
Sbjct: 234 NKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH--LCLAVPVGGFVCGC 291
Query: 618 VNGWS----GITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICP 660
+S TCS + F R +D P I P
Sbjct: 292 PAHYSLNADNRTCSAPTTFLLFSQKSAINR---MVIDEQQSPDIILP 335
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 172 bits (436), Expect = 4e-48
Identities = 83/236 (35%), Positives = 124/236 (52%), Gaps = 6/236 (2%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
V + L P G+AVDWV LYWTD+G I V+ L+G ++ LL L +P IAL
Sbjct: 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSR---IEVANLDGAHRKVLLWQSLEKPRAIALH 167
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G ++WT+ G PRI +S+DG + + D ++ WP G+TIDY +R+YW D K I
Sbjct: 168 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
E NL+G R V P+ + VFED+LY++ + T +I NKF + ++ N
Sbjct: 228 ERANLDGSHRKAVIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNK 285
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVT 256
L+ D+ L +Q N C D + LC+ ++TC CP + +
Sbjct: 286 LHFPMDIHTLHPQRQ-PAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHA 340
Score = 59.9 bits (144), Expect = 1e-09
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 10/192 (5%)
Query: 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
P + +G A +I + TLL L + +
Sbjct: 32 RPDRRSCKALGPEPVLLFANR---IDIRQVLPHRSE-YTLLLNNLENAIALDFHHRRELV 87
Query: 87 FWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146
FW+++ + RI A+++G N +V ++ P G+ +D+ +LYW D IE NL+
Sbjct: 88 FWSDVTLD-RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 146
Query: 147 GKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTY-RTNNILKINKFGNSDFNVLANNLNR 203
G R V+ + KP + + E +Y++ + T I + G+ + +L
Sbjct: 147 GAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 204
Query: 204 ASDVLILQENKQ 215
+ + I ++
Sbjct: 205 PNGLTIDYAGRR 216
Score = 34.8 bits (79), Expect = 0.085
Identities = 43/320 (13%), Positives = 86/320 (26%), Gaps = 48/320 (15%)
Query: 106 NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK 165
+++ L+ NN++ + + + ++W+D I NLNG + V T
Sbjct: 63 SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 122
Query: 166 LEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQE-------NKQAHN 218
++ D LY++ T+ I N G +L +L + + + +
Sbjct: 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182
Query: 219 VTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGN 278
+ + L D+ + ++D H
Sbjct: 183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRM----------------YWVDAKHHV 226
Query: 279 LPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFY 338
+ ++ L+ + K + + + D F
Sbjct: 227 IERAN-----------LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFT 275
Query: 339 GTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCI 398
G E + N + HP+ C + +C
Sbjct: 276 GKNQEIIRNKL-----HFPMDIHTLHPQRQPAGKNRCGDNNGGC-THLCLPS-------- 321
Query: 399 ATTQTCVCPPGFTGDTCQQC 418
TC CP GF C
Sbjct: 322 GQNYTCACPTGFRKINSHAC 341
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 160 bits (404), Expect = 4e-41
Identities = 84/300 (28%), Positives = 130/300 (43%), Gaps = 17/300 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ ++ P G+AVDW+ N+YWTD+ + V+ +G K++TL ++P I ++
Sbjct: 466 ISRDIQAPDGLAVDWIHSNIYWTDSV---LGTVSVADTKGVKRKTLFRENGSKPRAIVVD 522
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G M+WT+ G +I ++G + ++LV NIQWP GIT+D S RLYW D K +I
Sbjct: 523 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
SI++NG +R + E P+ L VFED ++++ I N+ SD N+LA N
Sbjct: 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 642
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQ---SALCINLPS------SHTCLCPDHLTE 251
L D+++ Q N C+ LC+ P TC CPD +
Sbjct: 643 LLSPEDMVLFHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML- 700
Query: 252 ELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART 311
+ SC + T V P T
Sbjct: 701 ---LARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLT 757
Score = 44.4 bits (104), Expect = 1e-04
Identities = 69/449 (15%), Positives = 111/449 (24%), Gaps = 66/449 (14%)
Query: 284 TCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTC---EFDDDFDPHCICQENFYGT 340
L T+ C C G C ++ D C +
Sbjct: 4 KLRWTVALLLAAAGTAVGDRC-----ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 58
Query: 341 YCEKVN--NSMCPCLNQ-GMCYPDLTHPEPTYKC----HCAPSYTGARCESRIC---ENK 390
C V + C + C P ++C C C + C E +
Sbjct: 59 TCLSVTCKSGDFSCGGRVNRCIP------QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFR 112
Query: 391 CHNGGTCIATTQTC-------------VCPPGFTGDTCQQCLNLKCQNGG-------VCV 430
CH+G CI+ C CP G QC + C C
Sbjct: 113 CHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCE 171
Query: 431 NKTTGLECDCPKFYY----GKNCQYSQCKNYCVNGECSITDSGPKC----MCSPGYSGKK 482
+ + C Y C + C++GEC S +C C +
Sbjct: 172 DGSDEWPQRCRGLYVFQGDSSPCSAFEFH--CLSGEC--IHSSWRCDGGPDCKDKSDEEN 227
Query: 483 CDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542
C TC + CS G C C S C + G +
Sbjct: 228 CAVATCRPD----EFQCSDGNCIHGSRQCDREYD--CKDMSDEVGCVNVTLCEGP-NKFK 280
Query: 543 VGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGK--QCTEREDSPSCHNYCD 600
C +L C + + I+ + +CL G C + + C
Sbjct: 281 CHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 340
Query: 601 NAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICP 660
+ + C + S + + C G + +
Sbjct: 341 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 400
Query: 661 RGYAGVRCQTLVHYISKKQSYVNSHISSI 689
VR TL ++ ++
Sbjct: 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVAL 429
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 158 bits (400), Expect = 9e-41
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 13/239 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ ++ P G+AVDW+ N+YWTD+ + V+ +G K++TL ++P I ++
Sbjct: 448 ISRDIQAPDGLAVDWIHSNIYWTDSV---LGTVSVADTKGVKRKTLFREQGSKPRAIVVD 504
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G M+WT+ G +I ++G + ++LV NIQWP GIT+D S RLYW D K +I
Sbjct: 505 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
SI++NG +R + E P+ L VFED ++++ I N+ SD N+LA N
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 624
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQ---SALCINLPS------SHTCLCPDHLT 250
L D+++ + Q N C+ LC+ P TC CPD +
Sbjct: 625 LLSPEDMVLFHQLTQPR-GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 682
Score = 39.4 bits (91), Expect = 0.005
Identities = 33/276 (11%), Positives = 64/276 (23%), Gaps = 28/276 (10%)
Query: 312 CYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKC 371
DC G+ E+ C+ + ++ G C +
Sbjct: 148 NDPDCEDGSDEWP------QRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCD--GGP 199
Query: 372 HCAPSYTGARCESRIC---ENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGV 428
C C C E +C +G CI ++ C C++
Sbjct: 200 DCKDKSDEENCAVATCRPDEFQCSDG-NCIHGSRQCDREYD-------------CKDMSD 245
Query: 429 CVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDS---GPKCMCSPGYSGKKCDT 485
V C+ P + + + C S +C + +
Sbjct: 246 EVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 305
Query: 486 CTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGD 545
C + G +C+C G+ C ++ Y + E D
Sbjct: 306 HVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLD 365
Query: 546 TSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPY 581
+ + Y + +
Sbjct: 366 PHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 401
Score = 34.4 bits (78), Expect = 0.14
Identities = 37/264 (14%), Positives = 67/264 (25%), Gaps = 26/264 (9%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYG 446
+ C +G + C C +G C++ + CD
Sbjct: 148 NDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF-HCLSG-ECIHSSW--RCDGGPDCKD 203
Query: 447 KNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCD-TCTCLNGDSGPKCMCSPGYSG 505
K+ + + C E +D C G ++CD C + C+ G
Sbjct: 204 KSDEENCAVATCRPDEFQCSDGN----CIHGS--RQCDREYDCKDMSDEVGCVNVTLCEG 257
Query: 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASL--ANKCTPNYCSNN 563
+ C +G C + +C N+C N +
Sbjct: 258 P--NKFKCHSG----------ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 305
Query: 564 GTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSG 623
C ++ C C + ED C + + LC + G C G+
Sbjct: 306 HVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ-CEEGFQL 364
Query: 624 ITCSERVSCAHFCFNGGTCREQNY 647
++
Sbjct: 365 DPHTKACKAVGSIAYLFFTNRHEV 388
Score = 33.6 bits (76), Expect = 0.28
Identities = 63/423 (14%), Positives = 105/423 (24%), Gaps = 61/423 (14%)
Query: 307 APARTCYLD---CNHGTC---EFDDDFDPHCICQENFYGTYCEKVNNS----MCPCLNQG 356
A C + C G C ++ D C + C V C
Sbjct: 1 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSC-GGRVN 59
Query: 357 MCYPDLTHPEPTYKC----HCAPSYTGARCESRIC---ENKCHNGGTCIATTQTC----V 405
C P ++C C C + C E +CH+G CI+ C
Sbjct: 60 RCIP------QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG-KCISRQFVCDSDRD 112
Query: 406 CPPGFTGDTCQQCLNLKCQ---NGGVCVNKT---------------TGLECDCPKFYYGK 447
C G +C N C+ + C + G
Sbjct: 113 CLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD 172
Query: 448 NCQYSQCKNYCVNGEC--SITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSG 505
+ S + +C++GEC S C + C TC + CS G
Sbjct: 173 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPD----EFQCSDGNCI 228
Query: 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGT 565
C C S C + G + C +L C + +
Sbjct: 229 HGSRQCDREYD--CKDMSDEVGCVNVTLCEGP-NKFKCHSGECITLDKVCNMARDCRDWS 285
Query: 566 CVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGIT 625
I+ + +CL G + C + ++ + + C + +
Sbjct: 286 DEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 345
Query: 626 CSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYISKKQSYVNSH 685
C + E+ + LDP K +
Sbjct: 346 L-----CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 400
Query: 686 ISS 688
+
Sbjct: 401 LIP 403
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 130 bits (329), Expect = 1e-33
Identities = 64/245 (26%), Positives = 83/245 (33%), Gaps = 39/245 (15%)
Query: 340 TYCEKVNNSMCPCLNQGMCYP-------DLTHPEPTYKCHCAPSYTGARCESRICENKCH 392
+ V PCL + + T + C+ C C
Sbjct: 97 PHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCR 156
Query: 393 NGGTCIATTQTCVCPPGFTGDTCQQCLNL-KCQNGGVCVNKTTGLECDCPKFYYGKNCQY 451
NGG C C CP GF G C++ L +C NGG+CV C CP +YG NC
Sbjct: 157 NGGFCNERR-ICECPDGFHGPHCEKALCTPRCMNGGLCVTPGF---CICPPGFYGVNCDK 212
Query: 452 SQCKNYCVN-GECSITDSGPKCMCSPGYSGKKCDTCTCLNG-------DSGPKCMCSPGY 503
+ C C N G C KC+C PG G++C+ C KC CS GY
Sbjct: 213 ANCSTTCFNGGTCFYPG---KCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGY 269
Query: 504 SGKKC----DTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNY 559
G C C GTC N C+C + GR C
Sbjct: 270 QGDLCSKPVCEPGCGAHGTCHE---PNKCQCQEGWHGRHCNKRY---------EASLIGT 317
Query: 560 CSNNG 564
++
Sbjct: 318 KHHHH 322
Score = 116 bits (292), Expect = 1e-28
Identities = 63/270 (23%), Positives = 82/270 (30%), Gaps = 65/270 (24%)
Query: 401 TQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVN 460
C G + + V ++ + + K CQ ++C C N
Sbjct: 104 QVGFPCLGKQDGVAAFEV------DVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRN 157
Query: 461 GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCI 520
G C C G+ G C+ C C+NGG C+
Sbjct: 158 GGFCN--ERRICECPDGFHGPHCEKALCTPR---------------------CMNGGLCV 194
Query: 521 PNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPP 580
C CP + G C+ C N GTC C C P
Sbjct: 195 ---TPGFCICPPGFYGVNCD------------KANCSTTCFNGGTCF---YPGKCICPPG 236
Query: 581 YSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGG 640
G+QC + C C N G C GK C C G+ G CS+ V C C G
Sbjct: 237 LEGEQC----EISKCPQPCRNGGKCI----GKSKCKCSKGYQGDLCSKPV-CEPGCGAHG 287
Query: 641 TCREQNYSLDPDLKPICICPRGYAGVRCQT 670
TC E N C C G+ G C
Sbjct: 288 TCHEPN---------KCQCQEGWHGRHCNK 308
Score = 101 bits (253), Expect = 1e-23
Identities = 64/285 (22%), Positives = 93/285 (32%), Gaps = 67/285 (23%)
Query: 217 HNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNH 276
H + PC + +
Sbjct: 98 HKASVVQVGFPCLGKQDGVAAFEVDVIVMNSE---------------------------- 129
Query: 277 GNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDC-NHGTCEFDDDFDPHCICQE 335
++ + + + +C+ A C C N G C C C +
Sbjct: 130 ---GNTILKTPQNAIFFK--------TCQQA---ECPGGCRNGGFCNERR----ICECPD 171
Query: 336 NFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGG 395
F+G +CEK + C+N G+C C C P + G C+ C C NGG
Sbjct: 172 GFHGPHCEKALCT-PRCMNGGLC-------VTPGFCICPPGFYGVNCDKANCSTTCFNGG 223
Query: 396 TCIATTQTCVCPPGFTGDTCQ--QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ 453
TC C+CPPG G+ C+ +C C+NGG C+ +C C K Y G C
Sbjct: 224 TCFY-PGKCICPPGLEGEQCEISKCPQ-PCRNGGKCIG---KSKCKCSKGYQGDLCSKPV 278
Query: 454 CKNYCVN-GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKC 497
C+ C G C KC C G+ G+ C+ G K
Sbjct: 279 CEPGCGAHGTCH---EPNKCQCQEGWHGRHCNKRYE-ASLIGTKH 319
Score = 79.1 bits (195), Expect = 3e-16
Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 311 TCYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTY 369
C C N GTC + CIC G CE ++ PC N G C
Sbjct: 214 NCSTTCFNGGTCFYPG----KCICPPGLEGEQCE-ISKCPQPCRNGGKCIGK-------S 261
Query: 370 KCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQ----CLNLKCQN 425
KC C+ Y G C +CE C GTC C C G+ G C + L +
Sbjct: 262 KCKCSKGYQGDLCSKPVCEPGCGAHGTCHE-PNKCQCQEGWHGRHCNKRYEASLIGTKHH 320
Query: 426 GG 427
Sbjct: 321 HH 322
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 117 bits (294), Expect = 2e-27
Identities = 56/353 (15%), Positives = 85/353 (24%), Gaps = 58/353 (16%)
Query: 331 CICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENK 390
C + + +T E + +
Sbjct: 362 SFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSF------------VIRAL 409
Query: 391 CHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
+ C C Q C G C C Y GKNC+
Sbjct: 410 GFTDIVTVQVLPQCECRCR-----DQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCE 460
Query: 451 YSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMC-----SPGYSG 505
E S +CS G C C C D K + +
Sbjct: 461 CQTQGRSSQELEGSCRKDNNSIICS-GLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINC 519
Query: 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGT 565
++ + C G + C+C + G C+C C + CS G
Sbjct: 520 ERYNGQVCGGPGRGLCF--CGKCRCHPGFEGSACQCERTTEGCLN----PRRVECSGRGR 573
Query: 566 CVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGIT 625
C C+C Y C ++ P C + C C+ G G
Sbjct: 574 CR----CNVCECHSGYQLPLC---QECPGCPSPCGKYISCAEC------LKFEKGPFGKN 620
Query: 626 CSERVSCAHF---CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYI 675
CS G TC+E++ C Y + + Y+
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERD---------SEGCWVAYTLEQQDGMDRYL 664
Score = 101 bits (253), Expect = 2e-22
Identities = 65/385 (16%), Positives = 95/385 (24%), Gaps = 54/385 (14%)
Query: 262 CKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTC 321
K++ + L ++ C + +T ++ T + C
Sbjct: 339 NKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATEC 398
Query: 322 EFDDDFDPHCICQENFYGTYCEKVNNS-MCPCLNQGMCYPDLTHPEP--TYKCHCAPSYT 378
+ F I F +V C C +Q C C Y
Sbjct: 399 IQEQSF---VIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYI 455
Query: 379 GARCESRICENKC-HNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLE 437
G CE + G+C + +C G C QCL C V G
Sbjct: 456 GKNCECQTQGRSSQELEGSCRKDNNSIICS-GLGDCVCGQCL---CHTSDVPGKLIYGQY 511
Query: 438 CDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKC 497
C+C NC+ + G KC C PG+ G C G C
Sbjct: 512 CECDTI----NCERYNGQVCGGPGRGLCFCG--KCRCHPGFEGSACQCERTTEG-----C 560
Query: 498 MCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTP 557
+ C G C NVC+C S Y C+ P
Sbjct: 561 LNP--------RRVECSGRGRCR----CNVCECHSGYQLPLCQ-----------ECPGCP 597
Query: 558 NYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
+ C +C K GK C+ N C C
Sbjct: 598 SPCGKYISCA-----ECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDS----EGC 648
Query: 618 VNGWSGITCSERVSCAHFCFNGGTC 642
++ + C
Sbjct: 649 WVAYTLEQQDGMDRYLIYVDESREC 673
Score = 95.2 bits (236), Expect = 2e-20
Identities = 53/289 (18%), Positives = 78/289 (26%), Gaps = 37/289 (12%)
Query: 398 IATTQTCVCPPGFTGDTCQ--QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ-- 453
+ T C G T C ++ K T EC + + + ++
Sbjct: 356 LKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415
Query: 454 CKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSG-------- 505
EC D G +C C C G G C C
Sbjct: 416 TVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSC 475
Query: 506 -KKCDTCTCLNGGTCIPN--SKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSN 562
K ++ C G C+ + G+ CEC + C
Sbjct: 476 RKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCER------YNGQVCGG 529
Query: 563 NGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKP-VCTCVNGW 621
G + GK C+C P + G C + C CS + + VC C +G+
Sbjct: 530 PGRGLCFCGK--CRCHPGFEGSACQCERTTEGC--LNPRRVECSGRGRCRCNVCECHSGY 585
Query: 622 SGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
C E C C +C E +G G C
Sbjct: 586 QLPLCQECPGCPSPCGKYISCAE-----------CLKFEKGPFGKNCSA 623
Score = 89.4 bits (221), Expect = 1e-18
Identities = 56/380 (14%), Positives = 88/380 (23%), Gaps = 53/380 (13%)
Query: 228 CHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLC 287
+AL L ++ C + +T ++ T + + +
Sbjct: 347 LDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVI 406
Query: 288 PDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDP-HCICQENFYGTYCEKVN 346
++ C R + C + C C + G CE
Sbjct: 407 RALGFTDIVTVQVLPQC---ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQT 463
Query: 347 NSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVC 406
+G C D C +C CH C
Sbjct: 464 QGRSSQELEGSCRKDNNSII----CSGLGDCVCGQCL-------CHTSDVPGKLIYGQYC 512
Query: 407 PPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSIT 466
G+C C C + G CQ + C+N
Sbjct: 513 ECDTINCERYNGQVCGGPGRGLCFCGK----CRCHPGFEGSACQCERTTEGCLNPRRVEC 568
Query: 467 DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN 526
+C +C+ C C +G P C PG C +C
Sbjct: 569 SGRGRC---------RCNVCECHSGYQLPLCQECPGCPSP------CGKYISCA-----E 608
Query: 527 VCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
K G+ C A N TC + S C Y+ +Q
Sbjct: 609 CLKFEKGPFGKNCSAAC--------PGLQLSNNPVKGRTCK---ERDSEGCWVAYTLEQQ 657
Query: 587 TEREDSPSCHNYCDNAGLCS 606
+ Y D + C
Sbjct: 658 ---DGMDRYLIYVDESRECV 674
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 101 bits (253), Expect = 4e-25
Identities = 43/176 (24%), Positives = 60/176 (34%), Gaps = 22/176 (12%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAP 375
+HG+ E C + +YG C K C + C
Sbjct: 8 HHHGSIEGRS----AVTCDDYYYGFGCNKFCRPRDDFFGHYAC-------DQNGNKTCME 56
Query: 376 SYTGARCESRICENKCH-NGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTT 434
+ G C IC C G+C C C G+ G C +C+ G+C
Sbjct: 57 GWMGPECNRAICRQGCSPKHGSCKLP-GDCRCQYGWQGLYCDKCIPHPGCVHGICNE--- 112
Query: 435 GLECDCPKFYYGKNCQ----YSQCKNYCVN-GECSITDSGP-KCMCSPGYSGKKCD 484
+C C + G+ C Y C+N G CS T +C C GYSG C+
Sbjct: 113 PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 93.2 bits (232), Expect = 3e-22
Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 24/172 (13%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTGDTCQQ-CLNLKCQNGGVCVNKTTGLECDCPKFYY 445
+ H+ G+ + C + G C + C G ++ C + +
Sbjct: 3 GSHHHHHHGSIEGRS-AVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG--NKTCMEGWM 59
Query: 446 GKNCQYSQCKNYC--VNGECSITDSGPKCMCSPGYSGKKCDTCTCLNG------DSGPKC 497
G C + C+ C +G C C C G+ G CD C G + +C
Sbjct: 60 GPECNRAICRQGCSPKHGSCK---LPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQC 116
Query: 498 MCSPGYSGKKCDT--------CTCLNGGTCIPNSKNN-VCKCPSQYTGRRCE 540
+C + G+ CD CLNGGTC + C CP Y+G CE
Sbjct: 117 LCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 87.4 bits (217), Expect = 3e-20
Identities = 42/210 (20%), Positives = 65/210 (30%), Gaps = 43/210 (20%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPG 477
+ + G ++ C +YYG C G + +G C G
Sbjct: 2 RGSHHHHHHGSIEGRSA---VTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG-NKTCMEG 57
Query: 478 YSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGR 537
+ G +C+ C G G+C C+C + G
Sbjct: 58 WMGPECNRAICRQG--------------------CSPKHGSCK---LPGDCRCQYGWQGL 94
Query: 538 RCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHN 597
C +KC P+ +G C C C + G+ C + + H
Sbjct: 95 YC-------------DKCIPHPGCVHGICN---EPWQCLCETNWGGQLCDKDLNYCGTHQ 138
Query: 598 YCDNAGLCSYSKQGKPVCTCVNGWSGITCS 627
C N G CS + K C+C G+SG C
Sbjct: 139 PCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 84.0 bits (208), Expect = 5e-19
Identities = 40/183 (21%), Positives = 56/183 (30%), Gaps = 28/183 (15%)
Query: 274 CNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCIC 333
+HG++ C D+ C D G D + + C
Sbjct: 8 HHHGSIEGRSAVTCDDYYYGF--------GCNKFC---RPRDDFFGHYACDQNGN--KTC 54
Query: 334 QENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHN 393
E + G C + G C C C + G C+ I
Sbjct: 55 MEGWMGPECNRAICRQGCSPKHGSCKLP-------GDCRCQYGWQGLYCDKCIPHP-GCV 106
Query: 394 GGTCIATTQTCVCPPGFTGDTCQQCLN-----LKCQNGGVCVNKTTGL-ECDCPKFYYGK 447
G C C+C + G C + LN C NGG C N +C CP+ Y G
Sbjct: 107 HGICN-EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
Query: 448 NCQ 450
NC+
Sbjct: 166 NCE 168
Score = 79.7 bits (197), Expect = 2e-17
Identities = 42/196 (21%), Positives = 60/196 (30%), Gaps = 39/196 (19%)
Query: 483 CDTCTCLNG--DSGPKCMCSPGYSGKKCDT----CTCLNGGTCIPNSKNNVCKCPSQYTG 536
+G + C Y G C+ G +N C + G
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYA--CDQNGNKTCMEGWMG 60
Query: 537 RRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH 596
C A+ C +G+C C+C + G C + P C
Sbjct: 61 PECNRAI-----------CRQGCSPKHGSCK---LPGDCRCQYGWQGLYCDKCIPHPGCV 106
Query: 597 NYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV---SCAHFCFNGGTCREQNYSLDPDL 653
+ G+C+ Q C C W G C + + C NGGTC
Sbjct: 107 H-----GICNEPWQ----CLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTG-----PD 152
Query: 654 KPICICPRGYAGVRCQ 669
K C CP GY+G C+
Sbjct: 153 KYQCSCPEGYSGPNCE 168
Score = 66.6 bits (163), Expect = 6e-13
Identities = 29/162 (17%), Positives = 43/162 (26%), Gaps = 35/162 (21%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
+ G+ + C Y G C C P G
Sbjct: 7 HHHHGSIE---GRSAVTCDDYYYGFGCN------------KFCRPRDDFFGHYACDQNG- 50
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSC 632
+ C+ + G +C C G C C C GW G+ C + +
Sbjct: 51 -NKTCMEGWMGPECNRAICRQGC---SPKHGSCKLP----GDCRCQYGWQGLYCDKCIP- 101
Query: 633 AHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHY 674
H G C E C+C + G C ++Y
Sbjct: 102 -HPGCVHGICNEPWQ---------CLCETNWGGQLCDKDLNY 133
Score = 52.8 bits (127), Expect = 3e-08
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 19/115 (16%)
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV 614
++ ++G+ EG+ + C Y G C + C +
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCNKFCRPRDDFF---GHYACDQNGN---- 51
Query: 615 CTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
TC+ GW G C+ + G+C+ C C G+ G+ C
Sbjct: 52 KTCMEGWMGPECNRAICRQGCSPKHGSCKLPGD---------CRCQYGWQGLYCD 97
Score = 40.0 bits (94), Expect = 6e-04
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 595 CHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLK 654
++ + G TC + + G C++ F C +
Sbjct: 3 GSHHHHHHGSIEGRSA----VTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG-------- 50
Query: 655 PICICPRGYAGVRCQT 670
C G+ G C
Sbjct: 51 -NKTCMEGWMGPECNR 65
Score = 36.6 bits (85), Expect = 0.010
Identities = 32/167 (19%), Positives = 50/167 (29%), Gaps = 32/167 (19%)
Query: 220 TNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNL 279
C + + + C + + C+ HG+
Sbjct: 31 NKFCRPRDDFFGHYACD--QNGNKTCMEGWM---GPECNRAICRQGC------SPKHGSC 79
Query: 280 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYG 339
C C C + C HG C ++ + C+C+ N+ G
Sbjct: 80 KLPGDCRCQYGWQGLY--------CD---KCIPHPGCVHGIC--NEPW--QCLCETNWGG 124
Query: 340 TYCEKVNN---SMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE 383
C+K N + PCLN G C Y+C C Y+G CE
Sbjct: 125 QLCDKDLNYCGTHQPCLNGGTC---SNTGPDKYQCSCPEGYSGPNCE 168
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 98.2 bits (244), Expect = 6e-22
Identities = 49/294 (16%), Positives = 80/294 (27%), Gaps = 50/294 (17%)
Query: 327 FDPHCICQENFYGTYCEKVNNSM-CPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
+ + + + + G + + C G C
Sbjct: 144 PRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFT--SAFTRLIVRRCEAQKWGPECNHL 201
Query: 386 ICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY 445
C N G C T C+CPPGF G TC++ C +
Sbjct: 202 C--TACMNNGVCHEDTGECICPPGFMGRTCEK---------------------ACELHTF 238
Query: 446 GKNCQYS-QCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYS 504
G+ C+ + C + + D C C+ G+ G +C+ C G GP C
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPY-GCSCATGWKGLQCN-EACHPGFYGPDC------- 289
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG 564
C+C NG C C C + G +CE + TP
Sbjct: 290 ---KLRCSCNNGEMCDRFQG---CLCSPGWQGLQCE--------REGIPRMTPKIVDLPD 335
Query: 565 TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCV 618
+ GK + C E + +++ +
Sbjct: 336 HIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTI 389
Score = 89.0 bits (220), Expect = 5e-19
Identities = 44/269 (16%), Positives = 71/269 (26%), Gaps = 35/269 (13%)
Query: 391 CHNGGTCIATTQTCVCPPGFTGDTCQ-----QCLNLKCQNGGVCVNKTTGLEC--DCPKF 443
+ G+ I + P + GG C
Sbjct: 133 IYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQ 192
Query: 444 YYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGY 503
+G C + C+N D+G +C+C PG+ G+ C+ C
Sbjct: 193 KWGPEC--NHLCTACMNNGVCHEDTG-ECICPPGFMGRTCEKA------------CELHT 237
Query: 504 SGKKCDTC-----TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPN 558
G+ C C + C+P+ C C + + G +C A +
Sbjct: 238 FGRTCKERCSGQEGCKSYVFCLPDP--YGCSCATGWKGLQCNEACHP--GFYGPDCKLRC 293
Query: 559 YCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCV 618
C+N C +G C C P + G QC D +
Sbjct: 294 SCNNGEMCDRFQG---CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKA 350
Query: 619 NGWSGITCSER-VSCAHFCFNGGTCREQN 646
+GW T E +
Sbjct: 351 SGWPLPTNEEMTLVKPDGTVLHPKDFNHT 379
Score = 63.6 bits (154), Expect = 8e-11
Identities = 39/215 (18%), Positives = 61/215 (28%), Gaps = 46/215 (21%)
Query: 474 CSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVC--KCP 531
G + P + GG ++ + +C
Sbjct: 134 YKNGSFIHSVPRHEVPDILEVHLPHAQPQDA---GVYSARYIGGNLFTSAFTRLIVRRCE 190
Query: 532 SQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTERED 591
+Q G C C NNG C G+ C C P + G+ C + +
Sbjct: 191 AQKWGPECNH--------------LCTACMNNGVCHEDTGE--CICPPGFMGRTCEKACE 234
Query: 592 S----PSCHNYCDNAGLCSYSKQGKPV---CTCVNGWSGITCSERVSCAHF--------- 635
+C C C P C+C GW G+ C+E +
Sbjct: 235 LHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCS 294
Query: 636 CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
C NG C C+C G+ G++C+
Sbjct: 295 CNNGEMCDRFQ---------GCLCSPGWQGLQCER 320
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 90.6 bits (224), Expect = 5e-20
Identities = 17/178 (9%), Positives = 50/178 (28%), Gaps = 16/178 (8%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
+ + + + Y+ + + + + + + +P +
Sbjct: 139 EEKKKIKNHYLFTCNTSDRYFYYNNPK---NGQLYRYDTASQSEALFYDCNCYKPVVLD- 194
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKART 139
+++ ++ I +I+ N L + NI+ Y S Y
Sbjct: 195 ---DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPA 247
Query: 140 IESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL 197
+ + +G + + + V +YF+ + +N + L
Sbjct: 248 LCVVKNDGTGFKELAKG-----EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 56.7 bits (136), Expect = 9e-09
Identities = 20/191 (10%), Positives = 64/191 (33%), Gaps = 17/191 (8%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-----LNEP 74
+ + L + + ++ +Y+ + + + + + G L+
Sbjct: 47 SNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD 106
Query: 75 YDIALEPLSGRMFWTEL--GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
I + +++ + IDG+ K + ++ + T + + Y+
Sbjct: 107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYY 161
Query: 133 ADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN-ILKINKFGN 191
+PK + + + + Y + + + + N+Y+ +N I+ +N
Sbjct: 162 NNPKNGQLYRYDTASQSEALFY----DCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNP 217
Query: 192 SDFNVLANNLN 202
+ + N+
Sbjct: 218 NPVVLTEANIE 228
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 84.6 bits (210), Expect = 1e-19
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE---NKCHNGGTCIATTQ--TCV 405
PC + G C + +++C C YTG RCE + E N C N TC+ C+
Sbjct: 14 PCEHAGKC----INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 406 CPPGFTGDTCQQ----CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNG 461
C PG+ G C+ C + C + G C++K +C+CP + G CQ ++ ++
Sbjct: 70 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVD--LHHILDA 127
Query: 462 EC 463
+
Sbjct: 128 QK 129
Score = 68.8 bits (169), Expect = 4e-14
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKCDT----CT---CLNGGTCIPNSKNNVCKCPSQYTGRRC 539
C+N +C C GY+G +C+ C C N TC+ C C Y G C
Sbjct: 20 KCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHC 79
Query: 540 ECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
E ++C + C +NG C+ + C+C ++G C
Sbjct: 80 EVNT---------DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 117
Score = 64.5 bits (158), Expect = 1e-12
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 449 CQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDT----C---------TCLNGDSGP 495
+ C++ G+C T +C C GY+G +C+ C TCL+
Sbjct: 10 LGANPCEH---AGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEF 66
Query: 496 KCMCSPGYSGKKCDT----CT---CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSC 548
+C+C PGY G C+ C CL+ G C+ C+CP+ +TG C+ +
Sbjct: 67 QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHH--I 124
Query: 549 ASLANKCTPNYCSNN 563
N+
Sbjct: 125 LD-----AQKMVWNH 134
Score = 64.2 bits (157), Expect = 2e-12
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
C + G CI + C+C YTG RCE V N+C N C N+ TC+ G+
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDV---------NECVSNPCQNDATCLDQIGE 65
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNY-CDNAGLCSYSKQGKPVCTCVNGWSGITCSERVS 631
C C+P Y G C D C + C + G C K + C C G++G C +
Sbjct: 66 FQCICMPGYEGVHCEVNTD--ECASSPCLHNGRC-LDKINEFQCECPTGFTGHLCQVDLH 122
Query: 632 -CAH---FCFNG 639
+N
Sbjct: 123 HILDAQKMVWNH 134
Score = 59.2 bits (144), Expect = 1e-10
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH-NYCDNAGLCSYSKQGKP 613
N C + G C+ G C+CL Y+G +C + C N C N C + G+
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVN--ECVSNPCQNDATCL-DQIGEF 66
Query: 614 VCTCVNGWSGITCSERVS-CAHF-CFNGGTCREQ--NYSLDPDLKPICICPRGYAGVRCQ 669
C C+ G+ G+ C CA C + G C ++ + C CP G+ G CQ
Sbjct: 67 QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQ--------CECPTGFTGHLCQ 118
Query: 670 T 670
Sbjct: 119 V 119
Score = 29.5 bits (67), Expect = 1.9
Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 40/148 (27%)
Query: 223 CDDKPCHQSALCINLPSSHTCLCPD-----HLTEELNVTSGKMSCKVAPARTCYLDCNHG 277
PC + CIN S C C ++N C P C +
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVN------ECVSNP-------CQND 56
Query: 278 ----NLPSSHTCLCPDHLTE---ELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPH 330
+ C+C E+N C +P C ++G C D +
Sbjct: 57 ATCLDQIGEFQCICMPGYEGVHCEVNT----DECASSP---CL---HNGRCL-DKINEFQ 105
Query: 331 CICQENFYGTYCEKVNN----SMCPCLN 354
C C F G C+ + + N
Sbjct: 106 CECPTGFTGHLCQVDLHHILDAQKMVWN 133
Score = 27.6 bits (62), Expect = 7.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPD 247
N C PC A C++ C+C
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMP 72
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 82.5 bits (204), Expect = 8e-19
Identities = 42/138 (30%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE---------------NKCHNGG 395
PC N G+C P L + ++ C C +T C S + N CHNGG
Sbjct: 7 PCENGGICLPGL--ADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGG 64
Query: 396 TCIATTQ---------TCVCPPGFTGDTCQQ----CLNLKCQNGGVCVNKTTGLECDCPK 442
TC + C CP GF G CQ C C+NGG+C + C+CP
Sbjct: 65 TCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPG 124
Query: 443 FYYGKNCQY--SQCKNYC 458
+ G+NCQY ++
Sbjct: 125 EFMGRNCQYKGGGHHHHH 142
Score = 71.7 bits (176), Expect = 5e-15
Identities = 36/159 (22%), Positives = 54/159 (33%), Gaps = 27/159 (16%)
Query: 449 CQYSQCKNYCVNGEC--SITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGK 506
C + C+N G C + D C C G++ C + S
Sbjct: 3 CDPNPCEN---GGICLPGLADGSFSCECPDGFTDPNCSS------VVEVASDEEEPTSAG 53
Query: 507 KCDTCTCLNGGTCIPNSKNNV-------CKCPSQYTGRRCECAVGDTSCASLANKCTPNY 559
C C NGGTC + CKCP + G C+ + N+C
Sbjct: 54 PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNI---------NECEVEP 104
Query: 560 CSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNY 598
C N G C + SC+C + G+ C + H++
Sbjct: 105 CKNGGICTDLVANYSCECPGEFMGRNCQYKGGGHHHHHH 143
Score = 68.6 bits (168), Expect = 6e-14
Identities = 48/172 (27%), Positives = 60/172 (34%), Gaps = 50/172 (29%)
Query: 508 CDTCTCLNGGTCIPNSKNN--VCKCPSQYTGRRCECAV---GDTSCASLANKCTPNYCSN 562
CD C NGG C+P + C+CP +T C V D + A CTPN C N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 563 NGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWS 622
GTC + E Y C C G++
Sbjct: 63 GGTCEISEAY---------------------------RGDTFIGYV------CKCPRGFN 89
Query: 623 GITCSERVS-CAHF-CFNGGTCREQ--NYSLDPDLKPICICPRGYAGVRCQT 670
GI C ++ C C NGG C + NYS C CP + G CQ
Sbjct: 90 GIHCQHNINECEVEPCKNGGICTDLVANYS--------CECPGEFMGRNCQY 133
Score = 67.0 bits (164), Expect = 2e-13
Identities = 34/132 (25%), Positives = 40/132 (30%), Gaps = 24/132 (18%)
Query: 317 NHGTC-EFDDDFDPHCICQENFYGTYCEKVNNSMC--------------PCLNQGMCYPD 361
N G C D C C + F C V PC N G C
Sbjct: 10 NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEIS 69
Query: 362 LTHPEPT---YKCHCAPSYTGARCESRICE---NKCHNGGTCIATTQ--TCVCPPGFTGD 413
+ T Y C C + G C+ I E C NGG C +C CP F G
Sbjct: 70 EAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR 129
Query: 414 TCQQCLNLKCQN 425
CQ +
Sbjct: 130 NCQYKGGG-HHH 140
Score = 63.2 bits (154), Expect = 4e-12
Identities = 32/155 (20%), Positives = 40/155 (25%), Gaps = 60/155 (38%)
Query: 389 NKCHNGGTCIATTQ----TCVCPPGFTGDTCQQ----------------CLNLKCQNGGV 428
N C NGG C+ +C CP GFT C C C NGG
Sbjct: 6 NPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGT 65
Query: 429 CVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDT--- 485
C T G C C G++G C
Sbjct: 66 CEIS---------------------------EAYRGDTFIGYVCKCPRGFNGIHCQHNIN 98
Query: 486 ------C----TCLNGDSGPKCMCSPGYSGKKCDT 510
C C + + C C + G+ C
Sbjct: 99 ECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY 133
Score = 39.7 bits (93), Expect = 6e-04
Identities = 40/182 (21%), Positives = 58/182 (31%), Gaps = 51/182 (28%)
Query: 222 HCDDKPCHQSALCINL--PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNL 279
CD PC +C+ S +C CPD T+ N +S T C
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDP-NCSSVVEVASDEEEPTSAGPC----- 55
Query: 280 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPH------CIC 333
+ + C N GTCE + + C C
Sbjct: 56 -TPNPCH------------------------------NGGTCEISEAYRGDTFIGYVCKC 84
Query: 334 QENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKC 391
F G +C+ N + PC N G+C DL Y C C + G C+ + +
Sbjct: 85 PRGFNGIHCQHNINECEVEPCKNGGICT-DLVA---NYSCECPGEFMGRNCQYKGGGHHH 140
Query: 392 HN 393
H+
Sbjct: 141 HH 142
Score = 29.3 bits (66), Expect = 2.1
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 636 CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYISKKQSYVNS 684
C NGG C D C CP G+ C ++V S ++ ++
Sbjct: 8 CENGGICLPGL----ADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSA 52
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 85.9 bits (212), Expect = 1e-17
Identities = 52/337 (15%), Positives = 90/337 (26%), Gaps = 61/337 (18%)
Query: 275 NHGNLPSSHTCLCPDHLTE-ELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCIC 333
N+ +P +C+ ++ + C ++ + C C
Sbjct: 376 NNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDC 435
Query: 334 QENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENK--- 390
C+ N G + C C P + G++CE + +
Sbjct: 436 A-------CQAQAEPNSHRCNNGNGTFE------CGVCRCGPGWLGSQCECSEEDYRPSQ 482
Query: 391 ------------CHNGGTCIATTQTCVCPPGFTGDTCQQ-----------CLNLKCQNGG 427
C G C+ CVC G + C G
Sbjct: 483 QDECSPREGQPVCSQRGECL--CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHG 540
Query: 428 VCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMC------SPGYSGK 481
C C C + G C + + C++ + KC C PG G
Sbjct: 541 QCSCGD----CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGD 596
Query: 482 KCDTC-TCLNGDSGPK--CMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRR 538
C+ C TC + + K C G D TC C ++ +
Sbjct: 597 TCEKCPTCPDACTFKKECVECKKFDRGALHDENTC--NRYCRDEIESVKELKDTGKDAVN 654
Query: 539 CECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSC 575
C + C + S+ + + + +P C
Sbjct: 655 CTY-KNEDDCVV---RFQYYEDSSGKSILYVVEEPEC 687
Score = 84.8 bits (209), Expect = 4e-17
Identities = 61/376 (16%), Positives = 95/376 (25%), Gaps = 90/376 (23%)
Query: 281 SSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGT 340
S L L EEL+++ +C C F +
Sbjct: 352 RSKVELEVRDLPEELSLSF-NATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRG----- 405
Query: 341 YCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIAT 400
C + G D + T+ C CA + GT
Sbjct: 406 -CPQEKEKSFTIKPVGFK--DSLIVQVTFDCDCACQAQAEPN----SHRCNNGNGTFE-- 456
Query: 401 TQTCVCPPGFTGDTCQ----------------QCLNLKCQNGGVCVNKTTGLECDCPKFY 444
C C PG+ G C+ + C G C+ +C C
Sbjct: 457 CGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG----QCVCHSSD 512
Query: 445 YGKNC-QYSQCKNYCVNGECSITDSG------PKCMCSPGYSGKKCDTCTCLNGDSGPKC 497
+GK +Y +C ++ SG C+C ++G C+ T + C
Sbjct: 513 FGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDT-----C 567
Query: 498 MCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKC-PSQYTGRRCECAVGDTSCASLANKCT 556
M S G C G C C C G CE
Sbjct: 568 MSSNG--------LLCSGRGKCE----CGSCVCIQPGSYGDTCEK-----------CPTC 604
Query: 557 PNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCT 616
P+ C+ C +C G E + C + ++
Sbjct: 605 PDACTFKKEC--------VECKKFDRGALHDENTCNRYCRDEIES-----------VKEL 645
Query: 617 CVNGWSGITCSERVSC 632
G + C+ +
Sbjct: 646 KDTGKDAVNCTYKNED 661
Score = 84.4 bits (208), Expect = 4e-17
Identities = 51/300 (17%), Positives = 76/300 (25%), Gaps = 64/300 (21%)
Query: 398 IATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNY 457
++ + C + C+ LK + + C K +
Sbjct: 366 LSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSL 425
Query: 458 CVNG--ECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCD------ 509
V +C S + C C PG+ G +C+
Sbjct: 426 IVQVTFDCDCACQAQAEPNSHRCNNGNGTFECG-------VCRCGPGWLGSQCECSEEDY 478
Query: 510 -------------TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE--CAVGDTSCASLANK 554
C G C+ C C S G+ C D SC +
Sbjct: 479 RPSQQDECSPREGQPVCSQRGECL----CGQCVCHSSDFGKITGKYCECDDFSC----VR 530
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV 614
CS +G C C C ++G C + +C N LC S +GK
Sbjct: 531 YKGEMCSGHGQCS----CGDCLCDSDWTGYYCNCTTRTDTCM--SSNGLLC--SGRGKCE 582
Query: 615 C----TCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
C G G TC + +C C C C + G
Sbjct: 583 CGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC--------------VECKKFDRGALHDE 628
Score = 80.9 bits (199), Expect = 6e-16
Identities = 51/285 (17%), Positives = 70/285 (24%), Gaps = 57/285 (20%)
Query: 234 CINLPSSHTCLCPDHLTEELNVTSGKM---SCKVAPARTCYLDCNHGNLPSSHTCLCPDH 290
C + P + L V +C+ + N C C
Sbjct: 406 CPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPG 465
Query: 291 LT----EELNVTSGKMSCKVAPARTCYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEK- 344
E R C G C C+C + +G K
Sbjct: 466 WLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL-----CGQCVCHSSDFGKITGKY 520
Query: 345 --------VNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICEN------- 389
V C G C C C +TG C +
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCS--------CGDCLCDSDWTGYYCNCTTRTDTCMSSNG 572
Query: 390 -KCHNGGTCIATTQTCVCPPGFTGDTCQQCLN--LKCQNGGVCVNKTTGLECDCPKFYYG 446
C G C + C PG GDTC++C C C +C KF G
Sbjct: 573 LLCSGRGKCECGSCVC-IQPGSYGDTCEKCPTCPDACTFKKEC--------VECKKFDRG 623
Query: 447 KNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKC---DTCTC 488
+ C YC + S+ K + G C + C
Sbjct: 624 ALHDENTCNRYCRDEIESV-----KELKDTGKDAVNCTYKNEDDC 663
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 79.0 bits (195), Expect = 4e-17
Identities = 25/203 (12%), Positives = 44/203 (21%), Gaps = 43/203 (21%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE---NKCHNGGTCIATTQ--TCV 405
C+ + Y + + + + C N G C TC
Sbjct: 11 ECMEETCSYEEAR----EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 406 CPPGFTGDTCQQ-----CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVN 460
C GF G C+ C C + + C C + Y + +
Sbjct: 67 CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC--IPTGP 124
Query: 461 GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK--------CDTCT 512
C S + S G + D
Sbjct: 125 YPCG-------------------KQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDP 165
Query: 513 CLNGGTCIPNSKNNVCKCPSQYT 535
N + ++ + + T
Sbjct: 166 TENPFDLLDFNQTQPERGDNNLT 188
Score = 75.2 bits (185), Expect = 1e-15
Identities = 24/162 (14%), Positives = 41/162 (25%), Gaps = 19/162 (11%)
Query: 315 DCNHGTCEFDDDFDPHCICQENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCH 372
+C TC +++ + + K + PC NQG C L Y C
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG----EYTCT 66
Query: 373 CAPSYTGARCESRICE----NKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ----CLNLK 422
C + G CE + + C C C G+T +
Sbjct: 67 CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
Query: 423 CQNGGVCVNKTTGLECDCPK-FYYGKNCQYSQCKNYCVNGEC 463
C + K + + + +
Sbjct: 127 CGKQTLERRKRSVAQATSSSGEAPDSITW--KPYDAADLDPT 166
Score = 71.3 bits (175), Expect = 2e-14
Identities = 29/201 (14%), Positives = 44/201 (21%), Gaps = 41/201 (20%)
Query: 412 GDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY-------SQCKNYCVNGECS 464
G ++C+ C + D K N S C+N G+C
Sbjct: 6 GHLERECMEETCSYEEAR-----EVFEDSDKTNEFWNKYKDGDQCETSPCQN---QGKCK 57
Query: 465 ITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSK 524
C C G+ GK C+ + C C
Sbjct: 58 DGLGEYTCTCLEGFEGKNCEL------FTRKLCSLDN-----------GDCDQFCHEEQN 100
Query: 525 NNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGK 584
+ VC C YT A P C +
Sbjct: 101 SVVCSCARGYTLADNGKAC---------IPTGPYPCGKQTLERRKRSVAQATSSSGEAPD 151
Query: 585 QCTEREDSPSCHNYCDNAGLC 605
T + + + +N
Sbjct: 152 SITWKPYDAADLDPTENPFDL 172
Score = 66.7 bits (163), Expect = 8e-13
Identities = 24/170 (14%), Positives = 40/170 (23%), Gaps = 20/170 (11%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKC----DTCT---CLNGGTCIPNSKNNVCKCPSQYTGRRC 539
D C C N G C C C + G+ C
Sbjct: 17 CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 76
Query: 540 ECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYC 599
E C+ + + C + C C Y+ + P+ C
Sbjct: 77 ELFTRKL--------CSLDNGDCDQFCHEEQNSVVCSCARGYTLADN-GKACIPTGPYPC 127
Query: 600 DNAGLCSYSKQGKPVCTCVNGWSGITCSERVS--CAHF-CFNGGTCREQN 646
L K+ T +G + + + + N + N
Sbjct: 128 GKQTLE-RRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFN 176
Score = 63.6 bits (155), Expect = 9e-12
Identities = 24/158 (15%), Positives = 41/158 (25%), Gaps = 18/158 (11%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
C+ ++ ++C + C N G C G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDG---------DQCETSPCQNQGKCKDGLGE 62
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV-S 631
+C CL + GK C + D C +Q VC+C G++ +
Sbjct: 63 YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKACIP 121
Query: 632 CAHF-CFNGGTCREQNYSLDPDLKPICICPRGYAGVRC 668
+ C R + G A
Sbjct: 122 TGPYPCGKQTLERRKRSV------AQATSSSGEAPDSI 153
Score = 32.0 bits (73), Expect = 0.40
Identities = 19/145 (13%), Positives = 31/145 (21%), Gaps = 22/145 (15%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHG--- 277
+ C+ PC C + +TC C + + + C + +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDN-------GDCDQFC 95
Query: 278 -NLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQEN 336
+S C C T N + + P C T E
Sbjct: 96 HEEQNSVVCSCARGYTLADNGKA-CIPTGPYP-------CGKQTLERRKRSVAQATSSSG 147
Query: 337 FYGTYCEKVNNSMC---PCLNQGMC 358
P N
Sbjct: 148 EAPDSITWKPYDAADLDPTENPFDL 172
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 79.3 bits (196), Expect = 2e-16
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 13/179 (7%)
Query: 14 REMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE 73
+E+NL + P G+ V G ++ T N I L+G+ L T +
Sbjct: 6 QELNLTNQDTG---PYGITVSDKG-KVWITQHKA---NMISCINLDGKITEYPLPTPDAK 58
Query: 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA 133
+ + G +++TE +I + G K + N P GIT P+ +++
Sbjct: 59 VMCLTISS-DGEVWFTENA-ANKIGRITKKGIIKEYTLPNPDSAPYGITEG-PNGDIWFT 115
Query: 134 DPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV-FEDNLYFSTYRTNNILKINKFGN 191
+ I I +GK Y + G P + + ++ L+F+ + N I +I + G+
Sbjct: 116 EMNGNRIGRITDDGK--IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGD 172
Score = 72.4 bits (178), Expect = 5e-14
Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 17/187 (9%)
Query: 5 SSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR 64
G + + + P + + L++T+ +N I T G
Sbjct: 127 DDGKIREY-------ELPNKGSYPSFITLGSDN-ALWFTENQ---NNAIGRITESGDITE 175
Query: 65 TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124
+ T + P I +++ E+ +I + G+ + P IT
Sbjct: 176 FKIPTPASGPVGITKGN-DDALWFVEII-GNKIGRITTSGEITEFKIPTPNARPHAITAG 233
Query: 125 YPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNIL 184
L++ + A I + N Y + +P+ + + ++F+ + I
Sbjct: 234 -AGIDLWFTEWGANKIGRLTSNNI--IEEYPIQIKSAEPHGICFDGETIWFAME-CDKIG 289
Query: 185 KINKFGN 191
K+ +
Sbjct: 290 KLTLIKD 296
Score = 62.3 bits (152), Expect = 1e-10
Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 6/153 (3%)
Query: 58 LEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQW 117
+E + + L PY I + G+++ T+ IS ++DGK +
Sbjct: 1 MEFKLQELNLTNQDTGPYGITVSD-KGKVWITQHK-ANMISCINLDGKITEYPLPTPDAK 58
Query: 118 PTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV-FEDNLYFS 176
+TI +++ + A I I G Y + PY + +++F+
Sbjct: 59 VMCLTIS-SDGEVWFTENAANKIGRITKKGI--IKEYTLPNPDSAPYGITEGPNGDIWFT 115
Query: 177 TYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209
N I +I G L N + S + +
Sbjct: 116 EMNGNRIGRITDDGKIREYELPNKGSYPSFITL 148
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 76.6 bits (189), Expect = 2e-15
Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 17/188 (9%)
Query: 5 SSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR 64
SG + V + + V +G ++++T+ G N I + +G
Sbjct: 48 QSGRIKEF-------EVPTPDAKVMCLIVSSLG-DIWFTENGA---NKIGKLSKKGGFTE 96
Query: 65 TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124
L + PY I +G +++T+L RI + DG + N +P IT+
Sbjct: 97 YPLPQPDSGPYGITEGL-NGDIWFTQLN-GDRIGKLTADGTIYEYDLPNKGSYPAFITLG 154
Query: 125 YPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTNNI 183
L++ + + +I I GK Y N P + D L+F N I
Sbjct: 155 -SDNALWFTENQNNSIGRITNTGK--LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKI 211
Query: 184 LKINKFGN 191
+I G
Sbjct: 212 GRITTTGE 219
Score = 75.8 bits (187), Expect = 3e-15
Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 13/179 (7%)
Query: 14 REMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE 73
E NL S P G+ G +++T N I GR K + T +
Sbjct: 11 EEFNLSIPDSG---PYGITSSEDG-KVWFTQHKA---NKISSLDQSGRIKEFEVPTPDAK 63
Query: 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA 133
+ + G +++TE G +I S G + P GIT + +++
Sbjct: 64 VMCLIVSS-LGDIWFTENG-ANKIGKLSKKGGFTEYPLPQPDSGPYGITEG-LNGDIWFT 120
Query: 134 DPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTNNILKINKFGN 191
I + +G Y + G P + + D L+F+ + N+I +I G
Sbjct: 121 QLNGDRIGKLTADG--TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGK 177
Score = 75.0 bits (185), Expect = 7e-15
Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 17/188 (9%)
Query: 5 SSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR 64
G T L S P G+ G ++++T G + I T +G
Sbjct: 90 KKGGFTEYP----LPQPDSG---PYGITEGLNG-DIWFTQLNG---DRIGKLTADGTIYE 138
Query: 65 TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124
L + P I L +++TE I + GK + + N P GIT
Sbjct: 139 YDLPNKGSYPAFITLGS-DNALWFTENQ-NNSIGRITNTGKLEEYPLPTNAAAPVGITSG 196
Query: 125 YPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTNNI 183
L++ + I I G+ Y +P+ + ++ ++F+ + N I
Sbjct: 197 -NDGALWFVEIMGNKIGRITTTGE--ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQI 253
Query: 184 LKINKFGN 191
+I
Sbjct: 254 GRITNDNT 261
Score = 43.1 bits (102), Expect = 2e-04
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 2 ASISSGNVTRVKREMNLKTVL--SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE 59
I + R+ + + P + +++T+ G +N I T +
Sbjct: 204 VEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNS-EIWFTEWG---ANQIGRITND 259
Query: 60 GRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG 92
+ L T EP+ I G +++
Sbjct: 260 NTIQEYQLQTENAEPHGITFGK-DGSVWFALKC 291
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 72.3 bits (178), Expect = 3e-15
Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 16/127 (12%)
Query: 315 DCNHGTCEFDDDFDPHCICQENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCH 372
+C TC +++ + + K + PC NQG C L Y C
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG----EYTCT 66
Query: 373 CAPSYTGARCESRICE----NKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ----CLNLK 422
C + G CE + + C C C G+T +
Sbjct: 67 CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
Query: 423 CQNGGVC 429
C +
Sbjct: 127 CGKQTLE 133
Score = 68.5 bits (168), Expect = 6e-14
Identities = 23/146 (15%), Positives = 34/146 (23%), Gaps = 33/146 (22%)
Query: 387 CENKCHNGGTCIATTQ--TCVCPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDC 440
E +C + QC CQN G C + C C
Sbjct: 8 LERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTC 67
Query: 441 PKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCS 500
+ + GKNC+ + C G + C + C C+
Sbjct: 68 LEGFEGKNCE---------------LFTRKLCSLDNGDCDQ-----FCHEEQNSVVCSCA 107
Query: 501 PGYSGKKCDT-------CTCLNGGTC 519
GY+ C
Sbjct: 108 RGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 65.8 bits (161), Expect = 4e-13
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 12/133 (9%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
C+ ++ ++C + C N G C G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDG---------DQCETSPCQNQGKCKDGLGE 62
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVS- 631
+C CL + GK C + D C + +Q VC+C G++ +
Sbjct: 63 YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFC-HEEQNSVVCSCARGYTLADNGKACIP 121
Query: 632 CAHF-CFNGGTCR 643
+ C R
Sbjct: 122 TGPYPCGKQTLER 134
Score = 63.1 bits (154), Expect = 4e-12
Identities = 26/161 (16%), Positives = 37/161 (22%), Gaps = 36/161 (22%)
Query: 413 DTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY-------SQCKNYCVNGECSI 465
+ + L +C + + D K N S C+N G+C
Sbjct: 2 EMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQN---QGKCKD 58
Query: 466 TDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKN 525
C C G+ GK C+ + C C +
Sbjct: 59 GLGEYTCTCLEGFEGKNCEL------FTRKLCSLDN-----------GDCDQFCHEEQNS 101
Query: 526 NVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTC 566
VC C YT A P C
Sbjct: 102 VVCSCARGYTLADNGKAC---------IPTGPYPCGKQTLE 133
Score = 62.7 bits (153), Expect = 6e-12
Identities = 18/126 (14%), Positives = 27/126 (21%), Gaps = 16/126 (12%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKCDT----CT---CLNGGTCIPNSKNNVCKCPSQYTGRRC 539
C C N G C C C + G+ C
Sbjct: 17 CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 76
Query: 540 ECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYC 599
E C+ + + C + C C Y+ + P+ C
Sbjct: 77 ELFTRKL--------CSLDNGDCDQFCHEEQNSVVCSCARGYTLADN-GKACIPTGPYPC 127
Query: 600 DNAGLC 605
L
Sbjct: 128 GKQTLE 133
Score = 35.7 bits (83), Expect = 0.012
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 8/70 (11%)
Query: 603 GLCSYSKQGKPVCTCVNGWSGITCSERVS-CA-HFCFNGGTCREQNYSLDPDLKPICICP 660
CSY + + + C C N G C++ C C
Sbjct: 15 ETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEY------TCTCL 68
Query: 661 RGYAGVRCQT 670
G+ G C+
Sbjct: 69 EGFEGKNCEL 78
Score = 27.6 bits (62), Expect = 6.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPD 247
+ C+ PC C + +TC C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLE 69
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 74.2 bits (183), Expect = 7e-15
Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 11/186 (5%)
Query: 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
+ L+ P+G+AVD G +Y TD N ++ + L GLN P +A++
Sbjct: 64 NGLYQPQGLAVDGAG-TVYVTDFN----NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT- 117
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142
G ++ + G R+ + K + L + P G+ +D S +Y D +
Sbjct: 118 QGAVYVADRG-NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVVK 175
Query: 143 INLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
+ V + P+ + V +Y + + TN ++K+ + + L
Sbjct: 176 LEAESN--NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL 233
Query: 202 NRASDV 207
N V
Sbjct: 234 NTPLAV 239
Score = 65.7 bits (161), Expect = 5e-12
Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNN--IMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
P GVAVD G N+Y T ++ L GL +P +A++
Sbjct: 23 RLSPSGVAVDSAG-NVYVTS----EGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG- 76
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142
+G ++ T+ + ++ A+ N+ L + + +P G+ +D +Y AD +
Sbjct: 77 AGTVYVTDFNNR-VVTLAA-GSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVK 133
Query: 143 INLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
+ K + V+ T N P + V N+Y + N ++K+ N+ + ++
Sbjct: 134 LAAGSKTQTVLPFTGLND--PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI 191
Query: 202 NRASDV 207
+
Sbjct: 192 TAPWGI 197
Score = 65.7 bits (161), Expect = 6e-12
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 10/170 (5%)
Query: 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
L+ P G+AVD G +Y D G +N ++ + + L TGLN+P +A++
Sbjct: 105 DGLNYPEGLAVDTQG-AVYVADRG---NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN- 159
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142
SG ++ T+ R+ + N+ L +I P GI +D + +Y + +
Sbjct: 160 SGNVYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVK 217
Query: 143 INLNGKDRFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTNNILKINKFGN 191
+ P + V D +Y + + ++K+ +
Sbjct: 218 LLAGST--TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 69.3 bits (170), Expect = 4e-14
Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCHC 373
C C F++ + ++ + PCLN G+C D+ +Y+C C
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDIN----SYECWC 73
Query: 374 APSYTGARCESRICE---NKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ----CLNLKCQ 424
+ G CE N C C G+ Q+ + C
Sbjct: 74 QVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCG 133
Query: 425 NGGVCVNKTT 434
V + TT
Sbjct: 134 RVSVSHSPTT 143
Score = 58.9 bits (143), Expect = 1e-10
Identities = 29/140 (20%), Positives = 34/140 (24%), Gaps = 29/140 (20%)
Query: 388 ENKCHNGGTCIATTQTCVCPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDCPKF 443
E KC QC C NGG+C + EC C
Sbjct: 20 EEKCSFEEAREVF---ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVG 76
Query: 444 YYGKNCQYSQ---CKNYCVNGECSIT-DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMC 499
+ GKNC+ KN C DS C C+ GY C
Sbjct: 77 FEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK------------SC 124
Query: 500 SPGYSGKKCDTCTCLNGGTC 519
P C
Sbjct: 125 KP------AVPFPCGRVSVS 138
Score = 58.1 bits (141), Expect = 3e-10
Identities = 20/121 (16%), Positives = 29/121 (23%), Gaps = 13/121 (10%)
Query: 528 CKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587
+ ++C PN C N G C C C + GK C
Sbjct: 33 ENTEKTNEFWKQYVDG---------DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNC- 82
Query: 588 EREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV-SCAHF-CFNGGTCREQ 645
D+ C K +C+C G+ + F C
Sbjct: 83 -ELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSP 141
Query: 646 N 646
Sbjct: 142 T 142
Score = 52.4 bits (126), Expect = 3e-08
Identities = 21/116 (18%), Positives = 30/116 (25%), Gaps = 17/116 (14%)
Query: 497 CMCSPGYSGKKC----DTCT---CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCA 549
K D C CLNGG C + + C C + G+ CE
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA------ 86
Query: 550 SLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLC 605
N + K C C Y ++ P+ C +
Sbjct: 87 ---TCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPD-QKSCKPAVPFPCGRVSVS 138
Score = 38.1 bits (89), Expect = 0.002
Identities = 23/118 (19%), Positives = 29/118 (24%), Gaps = 15/118 (12%)
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV 614
C CS + E + D + C N GLC
Sbjct: 18 CIEEKCSFEEAREVFENTEKT-----NEFWKQYVDGDQCEPNP-CLNGGLCKDDINSY-E 70
Query: 615 CTCVNGWSGITCSERVSCAHF--CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
C C G+ G C +C D K +C C GY Q
Sbjct: 71 CWCQVGFEGKNCELDATCNIKNGRCKQFCK------TGADSKVLCSCTTGYRLAPDQK 122
Score = 28.1 bits (63), Expect = 5.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPD 247
+ C+ PC LC + +S+ C C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQV 75
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 71.8 bits (175), Expect = 2e-13
Identities = 33/136 (24%), Positives = 47/136 (34%), Gaps = 12/136 (8%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPT-YKCHCA 374
H T D+ C C+ N G C K P P P C
Sbjct: 300 NLHATVCVYDNSKLTCECEHNTTGPDCGKC----KKNYQGRPWSPGSYLPIPKGAANACI 355
Query: 375 PSYTGARCESRICE-NKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKT 433
PS + E C NGGTC + C+CP +TG C++ +C+ G C
Sbjct: 356 PSISSIGTNVCDNELLHCQNGGTCHNNVR-CLCPAAYTGILCEKL---RCEEAGSC-GSD 410
Query: 434 TGLECDCPKFYYGKNC 449
+G + P + +
Sbjct: 411 SG-QGAPPHGTHHHHH 425
Score = 71.4 bits (174), Expect = 3e-13
Identities = 36/229 (15%), Positives = 57/229 (24%), Gaps = 15/229 (6%)
Query: 324 DDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE 383
+ C + + T K+ + P L + Y
Sbjct: 199 HTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFT 258
Query: 384 SRICENKCHNGGTCIATTQTCVCPPGFTGDTC-QQCLNLKCQN-GGVCVNKTTGLECDCP 441
+ F + + KC VCV + L C+C
Sbjct: 259 VTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECE 318
Query: 442 KFYYGKNCQYSQCKNY---CVNGECSITDSGPKCMCSPGYSGKKCDTC-----TCLNG-- 491
G +C + G G C P S + C C NG
Sbjct: 319 HNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGT 378
Query: 492 -DSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRC 539
+ +C+C Y+G C+ C G+C +S P
Sbjct: 379 CHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDS--GQGAPPHGTHHHHH 425
Score = 51.8 bits (123), Expect = 5e-07
Identities = 33/205 (16%), Positives = 54/205 (26%), Gaps = 44/205 (21%)
Query: 415 CQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVN--GECSITDSGPKC 472
+L+ + V + E +++Y + + + C C +S C
Sbjct: 256 FFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTC 315
Query: 473 MCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPS 532
C +G C C Y G+ + L
Sbjct: 316 ECEHNTTGPDCGKCK-------------KNYQGRPWSPGSYLPIPKGAA----------- 351
Query: 533 QYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDS 592
C +S + +C N GTC C C Y+G C +
Sbjct: 352 ------NACIPSISSIGTNVCDNELLHCQNGGTCH---NNVRCLCPAAYTGILCEK---- 398
Query: 593 PSCHNYCDNAGLCSYSKQGKPVCTC 617
C+ AG C S G+
Sbjct: 399 --LR--CEEAGSCG-SDSGQGAPPH 418
Score = 44.8 bits (105), Expect = 7e-05
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 553 NKCTPNYCSNNG-TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQG 611
C+ + CV K +C+C +G C + + + G +G
Sbjct: 292 KVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGK--CKKNYQGRPWSPGSYLPIPKG 349
Query: 612 KPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
C+ S I + + C NGGTC C+CP Y G+ C+
Sbjct: 350 AA-NACIPSISSIGTNVCDNELLHCQNGGTCHN---------NVRCLCPAAYTGILCE 397
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 63.2 bits (153), Expect = 2e-10
Identities = 39/233 (16%), Positives = 55/233 (23%), Gaps = 33/233 (14%)
Query: 309 ARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPT 368
+ +C+ D + CQ N G CE+ P Q
Sbjct: 324 SSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQC----KPFYFQHPERD------IR 373
Query: 369 YKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGV 428
C P + + C C G+ C C
Sbjct: 374 DPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAE 433
Query: 429 CVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCT- 487
C+ G + C G C C +G++CD C
Sbjct: 434 DPYGCKSCACNPL----GTIPGGNPC--DSETGYCY---------CKRLVTGQRCDQCLP 478
Query: 488 CLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
G S C P CD C + + C C GR+C
Sbjct: 479 QHWGLSNDLDGCRP------CD-CDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 58.9 bits (142), Expect = 3e-09
Identities = 48/273 (17%), Positives = 74/273 (27%), Gaps = 36/273 (13%)
Query: 384 SRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLEC-DCPK 442
S N C+C G C+ C++ C C
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 320
Query: 443 FYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPG 502
+ +C + G C G+ C+ C +
Sbjct: 321 NEHSSSCHFDMAVFLATGNVSG----GVCDNCQHNTMGRNCEQCKPFYF----QHPERDI 372
Query: 503 YSGKKCDTCTC-----LNGGTCIPNSKNNV------CKCPSQYTGRRCE-CAVGDT-SCA 549
C+ CTC NGG C + +V C+C G RC+ C G A
Sbjct: 373 RDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSA 432
Query: 550 SLANKCTPNYCSNNGTCVLIEGKPS----CKCLPPYSGKQCTE-------REDSPSCHNY 598
C C+ GT S C C +G++C + +
Sbjct: 433 EDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRP 492
Query: 599 CDNAGLCSYSKQGKPV---CTCVNGWSGITCSE 628
CD + + C+C+ G C+E
Sbjct: 493 CDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 46.6 bits (110), Expect = 2e-05
Identities = 35/219 (15%), Positives = 53/219 (24%), Gaps = 6/219 (2%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTC 511
S+C E CMC G C+ C ++ + G + C C
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELC--MDFYHDLPWRPAEGRNSNACKKC 318
Query: 512 TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEG 571
C + + G C T + +
Sbjct: 319 NCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHN-TMGRNCEQCKPFYFQHPERDIRDPNL 377
Query: 572 KPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVS 631
C C P S + C +G+ C G+ ++ +
Sbjct: 378 CEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYG 437
Query: 632 CAH-FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
C C GT D + C C R G RC
Sbjct: 438 CKSCACNPLGTI-PGGNPCDSETGY-CYCKRLVTGQRCD 474
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/137 (16%), Positives = 33/137 (24%), Gaps = 30/137 (21%)
Query: 311 TCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNN-------------SMCPCLNQGM 357
C+ T C C+ + G C+ C C G
Sbjct: 389 ENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGT 448
Query: 358 CYPDLTHPEPTYKCHCAPSYTGARCE-----------------SRICENKCHNGGTCIAT 400
T C+C TG RC+ C+ +C
Sbjct: 449 IPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSED 508
Query: 401 TQTCVCPPGFTGDTCQQ 417
+ C C P G C +
Sbjct: 509 SGQCSCLPHMIGRQCNE 525
Score = 40.1 bits (93), Expect = 0.003
Identities = 28/180 (15%), Positives = 41/180 (22%), Gaps = 19/180 (10%)
Query: 497 CMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE-CAVG------DTSCA 549
C C +C +N C C G CE C +
Sbjct: 254 CFCYGH--ASECAPVDGVNEEVEGMVH--GHCMCRHNTKGLNCELCMDFYHDLPWRPAEG 309
Query: 550 SLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSK 609
+N C C+ + + + +G D+ + N C K
Sbjct: 310 RNSNACKKCNCNEHSSSCHFDMAVFLA-----TGNVSGGVCDNCQHNTMGRN---CEQCK 361
Query: 610 QGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
+ C NGG C + C C G RC
Sbjct: 362 PFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCD 421
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 59.9 bits (146), Expect = 6e-10
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 14/174 (8%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNN-IMVSTLEGRKKRTLLNTG-----LNEPYDIA 78
+P GVAV+ ++ D ++N+ I + EGR K G L P +A
Sbjct: 29 FTEPSGVAVNAQN-DIIVAD----TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVA 83
Query: 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR 138
+ SG + TE +I + G+ +Q P G+T+D R+ + K
Sbjct: 84 VVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVM 142
Query: 139 TIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGN 191
+ + NG + P + V + ++ S R + + N G
Sbjct: 143 RVIIFDQNGNVLHKF-GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ 195
Score = 38.3 bits (90), Expect = 0.005
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPL 82
+L P GV V+ ++ +D + + V EG+ R + G N P + +
Sbjct: 162 HLEFPNGVVVNDKQ-EIFISDNRA---HCVKVFNYEGQYLRQIGGEGITNYPIGVGINS- 216
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLV-DNNIQWPTGITIDYPSQRLYWAD 134
+G + + ++ + DG+ L + + + A
Sbjct: 217 NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALM-DDGSVVLAS 268
Score = 33.7 bits (78), Expect = 0.16
Identities = 25/177 (14%), Positives = 60/177 (33%), Gaps = 30/177 (16%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALE 80
+ L PRGV VD G + + +++ G + L P + +
Sbjct: 117 ATILQHPRGVTVDNKG-RIIVVECK---VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVN 172
Query: 81 PLSGRMFWTELGIKPRI-----SG---ASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
+F ++ + G I G+ N +P G+ I+ + +
Sbjct: 173 D-KQEIFISDNR-AHCVKVFNYEGQYLRQIGGEGITN-------YPIGVGIN-SNGEILI 222
Query: 133 ADPKA-RTIESINLNGKDRFV-VYHTEDNGYKPYKLEVFED-NLYFSTYRTNNILKI 186
AD + +G+ + ++ + + + + +D ++ ++ + L I
Sbjct: 223 ADNHNNFNLTIFTQDGQ--LISALESKVKHAQCFDVALMDDGSVVLASK--DYRLYI 275
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 58.0 bits (139), Expect = 7e-10
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 366 EPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQN 425
C G G T + T Q + C C+N
Sbjct: 102 VVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPG----GCRN 157
Query: 426 GGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC 458
GG C + C+CP ++G +C+ ++ ++
Sbjct: 158 GGFCNERRI---CECPDGFHGPHCEGTKHHHHH 187
Score = 45.7 bits (107), Expect = 1e-05
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 5/99 (5%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPG 477
+N+ + C G G +I + +
Sbjct: 87 TVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEG-NTILXTPQNAIFFKT 145
Query: 478 YSGKKCDTCTCLNG---DSGPKCMCSPGYSGKKCDTCTC 513
+C C NG + C C G+ G C+
Sbjct: 146 CQQAECP-GGCRNGGFCNERRICECPDGFHGPHCEGTKH 183
Score = 44.5 bits (104), Expect = 3e-05
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 404 CVCPPGFTGDTCQQC-LNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGE 462
C G + + + G + + K CQ ++C C NG
Sbjct: 107 FPCLGXQDGVAAFEVDVIVMNSEGNTILX-------TPQNAIFFKTCQQAECPGGCRNGG 159
Query: 463 CSITDSGPKCMCSPGYSGKKCDTCTC 488
+ C C G+ G C+
Sbjct: 160 --FCNERRICECPDGFHGPHCEGTKH 183
Score = 44.5 bits (104), Expect = 3e-05
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 470 PKCMCSPGYSGKKCDTCTC-LNGDSGPKCMCSPG------YSGKKCDTCTCLNGGTCIPN 522
C G + G + +P + C NGG C
Sbjct: 105 VGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNER 164
Query: 523 SKNNVCKCPSQYTGRRCE 540
+C+CP + G CE
Sbjct: 165 ---RICECPDGFHGPHCE 179
Score = 42.2 bits (98), Expect = 2e-04
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 599 CDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICI 658
+ + +G + ++ C C NGG C E+ IC
Sbjct: 118 AFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR---------ICE 168
Query: 659 CPRGYAGVRCQTLVHY 674
CP G+ G C+ H+
Sbjct: 169 CPDGFHGPHCEGTKHH 184
Score = 41.4 bits (96), Expect = 4e-04
Identities = 21/137 (15%), Positives = 31/137 (22%), Gaps = 22/137 (16%)
Query: 463 CSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPN 522
S+ M P + T C G + N
Sbjct: 73 LSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDV-----IVMN 127
Query: 523 SKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYS 582
S+ N Q C P C N G C + C+C +
Sbjct: 128 SEGNTILXTPQNAIFFKTCQ----------QAECPGGCRNGGFCN---ERRICECPDGFH 174
Query: 583 GKQCTEREDSPSCHNYC 599
G C + H++
Sbjct: 175 GPHC----EGTKHHHHH 187
Score = 38.0 bits (87), Expect = 0.004
Identities = 11/95 (11%), Positives = 22/95 (23%), Gaps = 7/95 (7%)
Query: 298 TSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGM 357
+ ++ + + + + +N + C N G
Sbjct: 101 SVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGF 160
Query: 358 CYPDLTHPEPTYKCHCAPSYTGARCESRICENKCH 392
C C C + G CE + H
Sbjct: 161 CNER-------RICECPDGFHGPHCEGTKHHHHHH 188
Score = 36.8 bits (84), Expect = 0.010
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 6/80 (7%)
Query: 558 NYCSNNGTCVL-IEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCT 616
+ + L + C C N G C+ + +C
Sbjct: 113 QDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCN----ERRICE 168
Query: 617 CVNGWSGITCSERVSCAHFC 636
C +G+ G C E H
Sbjct: 169 CPDGFHGPHC-EGTKHHHHH 187
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 57.4 bits (139), Expect = 5e-09
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY-----SQCKNYCVNGECSITDSGPK 471
C++ C + G C + G C C Y G NC+ + C
Sbjct: 7 PCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 472 CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGY 503
C C+ GY + + + S
Sbjct: 67 CSCAQGYRLGEDHKQCVPHDQCACGVLTSEKR 98
Score = 53.9 bits (130), Expect = 7e-08
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 8/107 (7%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG 564
G C + CL+ G+C + C C Y G CE A + C ++C
Sbjct: 5 GSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNE--CHPERTDGCQHFCLPG- 61
Query: 565 TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQG 611
+ +C C Y + ++
Sbjct: 62 -----QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 103
Score = 49.3 bits (118), Expect = 2e-06
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 382 CESRICENKCHNGGTCI--ATTQTCVCPPGFTGDTCQQCLN--LKCQNGG---VCVNKTT 434
C S C + G+C TC C PG+ G C+ N + G C+
Sbjct: 8 CIS----QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQE 63
Query: 435 GLECDCPKFYYGKNCQYSQCKNYCVN 460
C C + Y +
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCA 89
Score = 46.6 bits (111), Expect = 1e-05
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 19/104 (18%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE------REDSPSCHNYCDNAGLCS 606
+ C C +NG+C +C C P Y G C E + C ++C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG---- 61
Query: 607 YSKQGKPVCTCVNGWSGITCSE------RVSCAHFCFNGGTCRE 644
Q C+C G+ + + +C
Sbjct: 62 ---QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
Score = 45.5 bits (108), Expect = 4e-05
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAP 375
++G+C+ D + C C + G+ CE N P G C + +Y C CA
Sbjct: 14 LHNGSCQ-DSIWGYTCTCSPGYEGSNCELAKNECHPERTDG-CQHFCLPGQESYTCSCAQ 71
Query: 376 SYTGARCESRICENKCHNGGTCIATTQTCV 405
Y + + G + +
Sbjct: 72 GYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
Score = 44.3 bits (105), Expect = 8e-05
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 19/88 (21%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRI----------CENKCHNGGTCIAT 400
PCL+ G C + Y C C+P Y G+ CE C++ C G
Sbjct: 12 PCLHNGSCQDSIW----GYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ----E 63
Query: 401 TQTCVCPPGFT-GDTCQQCLNLKCQNGG 427
+ TC C G+ G+ +QC+ G
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 41.2 bits (97), Expect = 7e-04
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKC-----DTCTCLNGGT---CIPNSKNNVCKCPSQYTGRR 538
+C + G C CSPGY G C + G C+P ++ C C Y
Sbjct: 18 SCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGE 77
Query: 539 CECAVGDTSCASLANKCTPNYCSNNGTC 566
+ + +
Sbjct: 78 DHKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 39.7 bits (93), Expect = 0.002
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 599 CDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICI 658
C + G C S G CTC G+ G C + H G Q++ L C
Sbjct: 13 CLHNGSCQDSIWGY-TCTCSPGYEGSNCELAKNECHPERTDGC---QHFCLPGQESYTCS 68
Query: 659 CPRGYAGVRCQ 669
C +GY
Sbjct: 69 CAQGYRLGEDH 79
Score = 33.1 bits (76), Expect = 0.27
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLP 280
+ C +PC + C + +TC C E N K C C C G
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGY-EGSNCELAKNECHPERTDGCQHFCLPG--Q 62
Query: 281 SSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGT 320
S+TC C + C C + +
Sbjct: 63 ESYTCSCAQGYR----LGEDHKQCVPHDQCACGVLTSEKR 98
Score = 28.5 bits (64), Expect = 7.9
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 636 CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYISKKQSYVNSH 685
C + G+C++ + C C GY G C+ + +++ H
Sbjct: 13 CLHNGSCQDSIWGY------TCTCSPGYEGSNCELAKNECHPERTDGCQH 56
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 55.8 bits (134), Expect = 7e-09
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 21/203 (10%)
Query: 437 ECDCPKFYYGKNCQYSQCKNYCVNGECS--ITDSGPKCMCSPGYSGKKCDTCTCLNGDSG 494
+ C +N C +N + + + +C+ + + +
Sbjct: 22 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 81
Query: 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANK 554
P+C C D C G +C+C + Y G+ CEC S L
Sbjct: 82 PQCECRCRDQS--RDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQELEGS 135
Query: 555 CTPN----YCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCD--NAGLCSYS 608
C + CS G CV C C + + C+ N +C
Sbjct: 136 CRKDNNSIICSGLGDCV----CGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 191
Query: 609 KQGKPV---CTCVNGWSGITCSE 628
+G C C G+ G C
Sbjct: 192 GRGLCFCGKCRCHPGFEGSACQH 214
Score = 45.8 bits (108), Expect = 2e-05
Identities = 32/162 (19%), Positives = 41/162 (25%), Gaps = 36/162 (22%)
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCP 441
+ + CH G C C G+ G C+ CQ G + LE C
Sbjct: 89 RDQSRDRSLCHGKGFLEC--GICRCDTGYIGKNCE------CQTQGRS---SQELEGSCR 137
Query: 442 KFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSP 501
K C CV G+C C K G C C
Sbjct: 138 KDNNSIIC---SGLGDCVCGQCL---------CHTSDVPGKL--------IYGQYCECDT 177
Query: 502 GY-SGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542
C G C C+C + G C+
Sbjct: 178 INCERYNGQVCGGPGRGLCF----CGKCRCHPGFEGSACQHH 215
Score = 40.8 bits (95), Expect = 7e-04
Identities = 26/135 (19%), Positives = 33/135 (24%), Gaps = 25/135 (18%)
Query: 303 SCKVAPARTCYLDCN-HGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPD 361
C+ C+ G E C C + G CE +G C D
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLE-----CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 139
Query: 362 LTHPE-------PTYKCHCAPSYTGARCES------------RICENKCHNGGTCIATTQ 402
+C C S + R C G +
Sbjct: 140 NNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG 199
Query: 403 TCVCPPGFTGDTCQQ 417
C C PGF G CQ
Sbjct: 200 KCRCHPGFEGSACQH 214
Score = 28.0 bits (62), Expect = 9.7
Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 23/166 (13%)
Query: 510 TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLI 569
C NG N C + V T C + + V +
Sbjct: 22 DSFCSNG-VTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 80
Query: 570 EGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSER 629
+ C+C D + C G +C C G+ G C +
Sbjct: 81 LPQCECRC------------RDQSRDRSLCHGKGFLECG-----ICRCDTGYIGKNCECQ 123
Query: 630 VSCAHFCFNGGTCREQNYSLD-----PDLKPICICPRGYAGVRCQT 670
G+CR+ N S+ + C+C +
Sbjct: 124 TQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIY 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 8e-09
Identities = 75/522 (14%), Positives = 138/522 (26%), Gaps = 148/522 (28%)
Query: 3 SISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62
+ NV+R++ + L+ L L + V +D G ++ G
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLID--G----------------VL----GSG 162
Query: 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGIT 122
K + Y + + ++FW L + +D N + +
Sbjct: 163 KTWVALDVCLS-YKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK--LEVFEDNLYFSTYRT 180
+ R++ + R R + KPY+ L V N+
Sbjct: 221 SNIK-LRIHSIQAELR-----------RLLK-------SKPYENCLLVL-LNVQ-----N 255
Query: 181 NNILKINKFGN-----------SDFNVLANN------LNRASDVLILQENKQ--AHNVTN 221
N F + L+ L+ S L E K +
Sbjct: 256 AKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 222 HCDDKP---CHQSALCINLPSSHTCLCPDHL----------TEELNVTSGKMSCKV-APA 267
D P + +++ + D L ++L + S V PA
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPA 369
Query: 268 --RTCYLDC----NHGNLPSSHTCL--------CPDHLTEELNVTSGKMSCKVAPARTCY 313
R + ++P+ L + +L+ S + K T
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTIS 427
Query: 314 LDCNHG-----TCEFDDDFDPH--CICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPE 366
+ + ++++ H + N T+ ++ + P Y + H
Sbjct: 428 I---PSIYLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLDQYFYSHIGH-- 479
Query: 367 PTYKCHCAPSYTGARCES--------RICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC 418
H R R E K I T G +T QQ
Sbjct: 480 -----HLKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDSTAWNASGSILNTLQQ- 526
Query: 419 LNLKCQNGGVCVNKTT--GLECDCPKFY--YGKNCQYSQCKN 456
LK +C N L F +N S+ +
Sbjct: 527 --LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 39.1 bits (90), Expect = 0.006
Identities = 46/300 (15%), Positives = 76/300 (25%), Gaps = 121/300 (40%)
Query: 72 NEPYD-IALEP--LSG--RMFWTELGIKPRISGASIDGKNKF--NLVDNNIQW------- 117
E D I + +SG R+FWT L K + KF ++ N ++
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWT-LLSKQE------EMVQKFVEEVLRINYKFLMSPIKT 100
Query: 118 ----PTGITIDYPSQR--LYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED 171
P+ +T Y QR LY N F Y+ +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLY--------------NDNQVFAKYNV----SRLQPYLKLRQ 142
Query: 172 NLYFSTYRTNNILKINK---------FGNSDFNVLANNLNRASDVLILQENKQAH--NVT 220
L L+ K G + +A ++ + V + K N+
Sbjct: 143 ALL--------ELRPAKNVLIDGVLGSGKT---WVALDVCLSYKVQCKMDFK-IFWLNLK 190
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCY-LDCNHGNL 279
N C P+ + E L + Y +D N +
Sbjct: 191 N---------------------CNSPETVLEMLQ-------------KLLYQIDPNWTSR 216
Query: 280 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDD--------DFDPHC 331
H+ + + K C L + F+ C
Sbjct: 217 S-DHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLV-------LLNVQNAKAWNAFNLSC 266
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 57.7 bits (139), Expect = 8e-09
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 364 HPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQ 417
+ PT KC C+P + G C + CE C +GG C+ + C+C G+ G C+Q
Sbjct: 403 YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK-CLCKKGYLGPQCEQ 455
Score = 54.6 bits (131), Expect = 7e-08
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 15/116 (12%)
Query: 556 TPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVC 615
++NG I + + C C N K C
Sbjct: 356 KSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGK-----C 410
Query: 616 TCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671
C GW G C C C +GG C N C+C +GY G +C+ +
Sbjct: 411 CCSPGWEGDFC-RTAKCEPACRHGGVCVRPNK---------CLCKKGYLGPQCEQV 456
Score = 48.4 bits (115), Expect = 5e-06
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTC 511
S+C C NG C+ T KC CSPG+ G C T KC+
Sbjct: 393 SECSRLCRNGYCTPTG---KCCCSPGWEGDFCRTA--------------------KCEP- 428
Query: 512 TCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C +GG C+ + N C C Y G +CE
Sbjct: 429 ACRHGGVCV---RPNKCLCKKGYLGPQCE 454
Score = 43.8 bits (103), Expect = 2e-04
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 399 ATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC 458
+ C +C L C+NG +C C + G C+ ++C+ C
Sbjct: 376 LMPEECRATVQPAQTLTSECSRL-CRNGYCTPTG----KCCCSPGWEGDFCRTAKCEPAC 430
Query: 459 VNGECSITDSGPKCMCSPGYSGKKCD 484
+G + + KC+C GY G +C+
Sbjct: 431 RHGGVCVRPN--KCLCKKGYLGPQCE 454
Score = 36.1 bits (83), Expect = 0.037
Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 22/133 (16%)
Query: 465 ITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSK 524
++ S G K D L + + +C G C P K
Sbjct: 352 LSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCR--NGYCTPTGK 409
Query: 525 NNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPS-CKCLPPYSG 583
C C + G C A + C + G CV +P+ C C Y G
Sbjct: 410 ---CCCSPGWEGDFCRTAKCEP------------ACRHGGVCV----RPNKCLCKKGYLG 450
Query: 584 KQCTEREDSPSCH 596
QC + + H
Sbjct: 451 PQCEQVDHHHHHH 463
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 53.5 bits (129), Expect = 1e-08
Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 406 CPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYS---QCKNYC 458
QC + CQNGG C ++ C C + G+NC+ Q
Sbjct: 34 AERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN 93
Query: 459 VNGECSIT-----DSGPKCMCSPGYSGKKCDT 485
NG C + C C GYS
Sbjct: 94 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125
Score = 50.0 bits (120), Expect = 2e-07
Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 6/87 (6%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCHC 373
N G+C+ D C C F G CE + +C N G H C C
Sbjct: 56 QNGGSCK-DQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 374 APSYTGARCESRICE---NKCHNGGTC 397
Y+ C
Sbjct: 115 HEGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 44.2 bits (105), Expect = 2e-05
Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 30/133 (22%)
Query: 458 CVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGG 517
C +CS ++ + + +GD +C SP C NGG
Sbjct: 17 CKEEQCSFEEAREIFKDAERTKL---FWISYSDGD---QCASSP-----------CQNGG 59
Query: 518 TCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKP---- 573
+C ++ +C C + GR CE + N G
Sbjct: 60 SCKDQLQSYICFCLPAFEGRNCETHK---------DDQLICVNENGGCEQYCSDHTGTKR 110
Query: 574 SCKCLPPYSGKQC 586
SC+C YS
Sbjct: 111 SCRCHEGYSLLAD 123
Score = 43.9 bits (104), Expect = 3e-05
Identities = 21/111 (18%), Positives = 31/111 (27%), Gaps = 5/111 (4%)
Query: 562 NNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGW 621
C E + K + + + C N G C + +C C+ +
Sbjct: 18 KEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCK-DQLQSYICFCLPAF 76
Query: 622 SGITCSERVS-CAHF-CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
G C NGG Q S K C C GY+ +
Sbjct: 77 EGRNCETHKDDQLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGV 125
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 51.3 bits (123), Expect = 2e-08
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 471 KCMCSPGYSGKKCDTC-----TCLNGDSGPKCMCSPGYSG------KKCDTCTCLNGGTC 519
+ +C + L + C C+ G + K C C NGGTC
Sbjct: 3 QVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTC 62
Query: 520 IPNSKNN--VCKCPSQYTGRRCE 540
+ VC+CP + G+ CE
Sbjct: 63 QQALYFSDFVCQCPEGFAGKSCE 85
Score = 48.6 bits (116), Expect = 2e-07
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 18/93 (19%)
Query: 331 CICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE-- 388
IC++ ++ + + P L C C +
Sbjct: 4 VICRDEKTQMIYQQHQSWLRPVLRSNR----------VEYCWCNSGRAQ-CHSVPVKSCS 52
Query: 389 -NKCHNGGTCIATTQ----TCVCPPGFTGDTCQ 416
+C NGGTC C CP GF G +C+
Sbjct: 53 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 47.9 bits (114), Expect = 3e-07
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 368 TYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQ---CLNLKCQ 424
+Y+ C T + + + C C G C +C
Sbjct: 1 SYQVICRDEKTQMIYQQHQSWLRPVLRS---NRVEYCWCNSGRAQCHSVPVKSCSEPRCF 57
Query: 425 NGGVCVN--KTTGLECDCPKFYYGKNCQ 450
NGG C + C CP+ + GK+C+
Sbjct: 58 NGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 44.0 bits (104), Expect = 7e-06
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 574 SCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCA 633
C + + + C C +G + SC+
Sbjct: 3 QVICRDEKTQMIYQQHQSWLRPV----------LRSNRVEYCWCNSGRAQCHSVPVKSCS 52
Query: 634 HF-CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
CFNGGTC++ Y D +C CP G+AG C+
Sbjct: 53 EPRCFNGGTCQQALYFSDF----VCQCPEGFAGKSCEI 86
Score = 42.9 bits (101), Expect = 2e-05
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 330 HCICQENFYGTYCEKVN-NSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE 388
+C C + V S C N G C L + C C + G CE
Sbjct: 33 YCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQAL--YFSDFVCQCPEGFAGKSCEIDTRA 90
Score = 40.2 bits (94), Expect = 2e-04
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 496 KCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKC 555
+ +C + + +++ C C S + C
Sbjct: 3 QVICRDEKTQMIYQQHQS-WLRPVLRSNRVEYCWCNSGRAQ----------CHSVPVKSC 51
Query: 556 TPNYCSNNGTCVLIEGKP--SCKCLPPYSGKQC 586
+ C N GTC C+C ++GK C
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
Score = 32.5 bits (74), Expect = 0.074
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 471 KCMCSPGYSG------KKCDTCTCLNG--------DSGPKCMCSPGYSGKKCDT 510
C C+ G + K C C NG S C C G++GK C+
Sbjct: 33 YCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 32.1 bits (73), Expect = 0.11
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 575 CKCLPPYSGKQCTEREDSPSC-HNYCDNAGLC-SYSKQGKPVCTCVNGWSGITCSERVSC 632
C C + + C C N G C VC C G++G +C
Sbjct: 34 CWCNSGRAQCHSVPVKS---CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 90
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 55.2 bits (132), Expect = 7e-08
Identities = 39/312 (12%), Positives = 66/312 (21%), Gaps = 40/312 (12%)
Query: 359 YPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ-- 416
+ G + + PP G +
Sbjct: 132 LRAAALKLTLASVREREPFKG--WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEA 189
Query: 417 --QCLNLKCQNGGVCVNKTTGLECDCPK-FYYGKNCQYSQC--------KNYCVNGECSI 465
+ C NGGVC CDC + + GK+C + Y
Sbjct: 190 GEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQN 249
Query: 466 TDSGPKCMCSPGYSGKKCDTCTCLNGDSG-----------PKCMCSPGYSGKKCDTCTCL 514
+ + + + G S + + G L
Sbjct: 250 PIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSG-----AFEAL 304
Query: 515 NGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPS 574
+ N R+ +V + + + + G PS
Sbjct: 305 VEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTML-GSDDFFYVGGSPS 363
Query: 575 CKCLPPYSGKQ----CTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV 630
LP C + N L +KQG P ++G C
Sbjct: 364 TADLPGSPVSNNFMGCLK---EVVYKNNDVRLELSRLAKQGDP-KMKIHGVVAFKCENVA 419
Query: 631 SCAHFCFNGGTC 642
+ F
Sbjct: 420 TLDPITFETPES 431
Score = 45.6 bits (107), Expect = 6e-05
Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 13/223 (5%)
Query: 408 PGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITD 467
P + +T + CL+ C+N G+C + CDC Y + +G +
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKI 671
Query: 468 SGPKCMCSPGYSGK------KCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIP 521
P M + + + L G
Sbjct: 672 QLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETL 731
Query: 522 NSKNNVC-----KCPSQYTGRRCECAVGDTSCAS--LANKCTPNYCSNNGTCVLIEGKPS 574
+ N+ G+ + V D + +A T N T ++ E +
Sbjct: 732 FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYL 791
Query: 575 CKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
+ G + + + + C N + +
Sbjct: 792 SSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRN 834
Score = 44.1 bits (103), Expect = 2e-04
Identities = 41/319 (12%), Positives = 70/319 (21%), Gaps = 39/319 (12%)
Query: 392 HNGGTCIATTQTCVCPPGFTGDTCQQCLNLK----CQNGGVCVNKTTGLECDCPKFYYGK 447
T + F G + +G V ++ G+
Sbjct: 132 LRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGE 191
Query: 448 NCQYSQCKNYCVNGECSITDSGPKCMCS-PGYSGKKCDTCT--CLNGDSGPKCMCSPGYS 504
+ C N G CS+ D C CS G+ GK C + G + C
Sbjct: 192 EGEGGVCLN---GGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQ 248
Query: 505 GKKCDTCTCL---------NGGTCIPNSKNNVCKCPSQYTGR-RCECAVGDTSCASLANK 554
+ + NG + + G +G + +L
Sbjct: 249 NPIQSSSDEITLSFKTLQRNGLMLHTGKSADYV-NLALKNGAVSLVINLGSGAFEALVEP 307
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV 614
+ N + +Q T D +
Sbjct: 308 VNGKFNDNA----------WHDVKVTRNLRQVTISVDGILTTT-GYTQEDYTMLGSDDFF 356
Query: 615 CTC----VNGWSGITCSER-VSC-AHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRC 668
G S + C + R + L P + G +C
Sbjct: 357 YVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDP-KMKIHGVVAFKC 415
Query: 669 QTLVHYISKKQSYVNSHIS 687
+ + S IS
Sbjct: 416 ENVATLDPITFETPESFIS 434
Score = 40.6 bits (94), Expect = 0.002
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 548 CASLANKCTPNYCSNNGTCVLIEGKPSCKC-LPPYSGKQCTEREDSPSCHNYC 599
C + C + CSN G C+ SC C + +SG C + +
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 1065
Score = 37.9 bits (87), Expect = 0.015
Identities = 16/73 (21%), Positives = 24/73 (32%)
Query: 525 NNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGK 584
+ K Q + V + A C N C NNG C + C C
Sbjct: 592 DGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG 651
Query: 585 QCTEREDSPSCHN 597
+ ERE + ++
Sbjct: 652 RSCEREATVLSYD 664
Score = 37.9 bits (87), Expect = 0.015
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 414 TCQQCLNLKCQNGGVCVNKTTGLECDCPK-FYYGKNCQYSQCKNYCVNGECSIT 466
C C N GVC+ + G CDC + G C G IT
Sbjct: 1016 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQIT 1069
Score = 32.9 bits (74), Expect = 0.51
Identities = 33/275 (12%), Positives = 51/275 (18%), Gaps = 44/275 (16%)
Query: 271 YLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPH 330
+ + S D + + + C N G C DD
Sbjct: 158 RVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGG-VCL---NGGVCSVVDD-QAV 212
Query: 331 CICQENFY-GTYCEKVNNSMCP--CLNQGMCYPDLTHPEPTYKCHCAPS----------- 376
C C + G C + ++ CY +P + S
Sbjct: 213 CDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLML 272
Query: 377 YTGAR------------------CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC 418
+TG S E
Sbjct: 273 HTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTIS 332
Query: 419 LNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGY 478
++ G T L D + G + N C+ Y
Sbjct: 333 VDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMG-------CLKEVVY 385
Query: 479 SGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTC 513
G M G KC+
Sbjct: 386 KNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVAT 420
Score = 32.5 bits (73), Expect = 0.57
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 490 NGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCP-SQYTGRRC 539
NG C C +C N G C+ C C + ++G C
Sbjct: 1006 NGQIERGCEGPST----TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1052
Score = 32.1 bits (72), Expect = 0.79
Identities = 8/65 (12%), Positives = 16/65 (24%)
Query: 220 TNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNL 279
+ C +C + C C + + GK + Y +
Sbjct: 190 GEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQN 249
Query: 280 PSSHT 284
P +
Sbjct: 250 PIQSS 254
Score = 31.4 bits (70), Expect = 1.4
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 388 ENKCHNGGTCIA--TTQTCVCP-PGFTGDTCQQ 417
E+ C N G C+ +C C F+G C
Sbjct: 1022 EDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCND 1054
Score = 29.4 bits (65), Expect = 4.7
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 472 CMCSPGYSGKKCDTCTCLNGDSGPK-CMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKC 530
C+ G+ D S + K C + C N G C VC C
Sbjct: 585 CIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC 644
Query: 531 PSQ-YTGRRCE 540
Y GR CE
Sbjct: 645 SGTGYLGRSCE 655
Score = 29.4 bits (65), Expect = 4.9
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHC-APSYTGARCESRICENKCHNGGTCI 398
C NQG+C + C C S++G C GG I
Sbjct: 1024 SCSNQGVCLQQWD----GFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQI 1068
Score = 29.4 bits (65), Expect = 6.0
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 220 TNHCDDKPCHQSALCINLPSSHTCLCPDH 248
+ C + C +C+ +C C
Sbjct: 1017 STTCQEDSCSNQGVCLQQWDGFSCDCSMT 1045
Score = 29.0 bits (64), Expect = 6.3
Identities = 17/221 (7%), Positives = 42/221 (19%), Gaps = 23/221 (10%)
Query: 220 TNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNL 279
C PC + +C + + + C C + + +
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMH 678
Query: 280 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFD--------------D 325
+ + S A LD + +
Sbjct: 679 TEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAGYNLN 738
Query: 326 DFDPHC--ICQENFYGTYC---EKVNNSMCPCLNQGMCYPDL---THPEPTYKCHCAPSY 377
D + H + + ++ + + + ++ E Y ++
Sbjct: 739 DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNF 798
Query: 378 TGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC 418
G + C F
Sbjct: 799 IGHLQSLTFNGM-AYIDLCKNGDIDYCELNARFGFRNIIAD 838
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 49.3 bits (118), Expect = 2e-07
Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 18/108 (16%)
Query: 339 GTYCEKVNNSMC---PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCH--- 392
G C + C G C + ++ C C + G C+ + C
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIG----SFSCDCRSGWEGRFCQREVSFLNCSLDN 61
Query: 393 --NGGTCIATTQ--TCVCPPGFTGDTCQQ----CLNLKCQNGGVCVNK 432
C+ C C PG+ + C + K
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEK 109
Score = 45.9 bits (109), Expect = 2e-06
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 544 GDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH-NYCDNA 602
GD + C +GTC+ G SC C + G+ C +C +
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 603 GLCSYSKQGKPVCTCVNGWSG----ITCSERVSCAHFCFNGGTCRE 644
C + G C+C G+ + C V C E
Sbjct: 66 HYCL-EEVGWRRCSCAPGYKLGDDLLQCHPAVKFP--CGRPWKRME 108
Score = 45.9 bits (109), Expect = 3e-06
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 31/128 (24%)
Query: 412 GDTCQ-----QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSIT 466
GD C C G C++ CDC + G+ CQ + ++
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ--REVSFL-------- 55
Query: 467 DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK-------CDTCTCLNGGTC 519
C G CL +C C+PGY C
Sbjct: 56 ----NCSLDNGGCTH-----YCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKR 106
Query: 520 IPNSKNNV 527
+ ++++
Sbjct: 107 MEKKRSHL 114
Score = 42.0 bits (99), Expect = 6e-05
Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 18/94 (19%)
Query: 483 CDTCTCLNGDSGPKCMCSPGYSGKKCDTCT---------CLNGGTCIPNSKNNVCKCPSQ 533
C TC++G C C G+ G+ C C+ C C
Sbjct: 23 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 82
Query: 534 YTGRRCECAVGDTSCASLANKCTPNYCSNNGTCV 567
Y C + C +
Sbjct: 83 YKLGDDL-----LQC----HPAVKFPCGRPWKRM 107
Score = 40.9 bits (96), Expect = 1e-04
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNN----SMCPCLNQGMCYPDLTHPEPTYKC 371
C HGTC D C C+ + G +C++ + S+ C ++ +C
Sbjct: 23 CGHGTCI-DGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVG----WRRC 77
Query: 372 HCAPSYTGARCESRI---CENKCHNGGTCI 398
CAP Y + + C +
Sbjct: 78 SCAPGYKLGDDLLQCHPAVKFPCGRPWKRM 107
Score = 27.0 bits (60), Expect = 9.5
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 216 AHNVTNHCDDKPCHQSALCINLPSSHTCLCPD 247
H C CI+ S +C C
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRS 41
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 50.0 bits (119), Expect = 1e-06
Identities = 25/199 (12%), Positives = 57/199 (28%), Gaps = 14/199 (7%)
Query: 3 SISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62
+ G + + + N + + G+A G +L T S + + +G
Sbjct: 49 NHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTV 107
Query: 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIK---------PRISGASIDGKNKFNLVDN 113
+ L I + + P S + ++
Sbjct: 108 ETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166
Query: 114 NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV-FEDN 172
G+ LY ++ + + I ++ D+ E N
Sbjct: 167 VFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN 224
Query: 173 LYFSTYRTNNILKINKFGN 191
LY +T+ N++++I +
Sbjct: 225 LYGATHIYNSVVRIAPDRS 243
Score = 33.4 bits (76), Expect = 0.22
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 116 QWPTGITIDYPSQRLYWADPKARTIESINLNGK-DRFVVYHTEDNGYKPYKLEVFED-NL 173
+ + P ++ + + I SI +G + +G L + +L
Sbjct: 32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSG-----LAFTSNGDL 85
Query: 174 YFSTYRTNNILKI 186
+ + ++I +
Sbjct: 86 VATGWNADSIPVV 98
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 50.2 bits (119), Expect = 1e-06
Identities = 36/220 (16%), Positives = 52/220 (23%), Gaps = 5/220 (2%)
Query: 410 FTGDTCQQCLNLKCQNGGVCVNKTTGLECD--CPKFYYGKNCQYSQCKNYCVNGECSITD 467
+ + ++ + +NK EC CP GK + N C T
Sbjct: 127 YLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCW-TH 185
Query: 468 SGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTC-TCLNGGTCIPNSKNN 526
S + +C C L S CS KC C G C+
Sbjct: 186 SHCQKVCPTICKSHGCT-AEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPP 244
Query: 527 VCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
C C + + Y +N C+ C
Sbjct: 245 YYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPC 304
Query: 587 TEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITC 626
+ S Q CT +NG I
Sbjct: 305 LGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINI 344
Score = 42.5 bits (99), Expect = 4e-04
Identities = 29/250 (11%), Positives = 55/250 (22%), Gaps = 24/250 (9%)
Query: 354 NQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGD 413
N +CY + ++ C + C G +
Sbjct: 122 NNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPAT-VINGQFVE 180
Query: 414 TCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY-------SQCKNYCVNGECSIT 466
C + + +C + E C NC C+N+ ++G C T
Sbjct: 181 RCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVET 240
Query: 467 DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN 526
C P Y + C S ++ ++ C
Sbjct: 241 -------CPPPYYHFQDWRCVN--FSFCQDLHHKCKNSRRQGCHQYVIHNNKC------- 284
Query: 527 VCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
+ +CPS YT + + C +
Sbjct: 285 IPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINI 344
Query: 587 TEREDSPSCH 596
+ +
Sbjct: 345 RGGNNLAAEL 354
Score = 40.6 bits (94), Expect = 0.002
Identities = 31/222 (13%), Positives = 50/222 (22%), Gaps = 11/222 (4%)
Query: 315 DCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCA 374
+ + + +CP +G T + C
Sbjct: 124 ELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCW 183
Query: 375 PSYTGARCESRIC-ENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKT 433
+ IC + C G C + C C C N G CV
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNF--YLDGRCVET- 240
Query: 434 TGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDS 493
CP YY ++C + +S + KC C +G +
Sbjct: 241 ------CPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKC-IPECPSGYT 293
Query: 494 GPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYT 535
C L G +S + +
Sbjct: 294 MNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTV 335
Score = 33.7 bits (76), Expect = 0.21
Identities = 26/224 (11%), Positives = 45/224 (20%), Gaps = 26/224 (11%)
Query: 352 CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQ-TCVCPPGF 410
+ + L + P + C + VCP
Sbjct: 137 LDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTIC 196
Query: 411 TGDTC-QQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSG 469
C + L + G C +C + +Y +C C
Sbjct: 197 KSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDG----RCVETCPPPYY------ 246
Query: 470 PKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCK 529
C+N S ++ ++ CIP +
Sbjct: 247 ------------HFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTM 294
Query: 530 CPSQYTGRRC--ECAVGDTSCASLANKCTPNYCSNNGTCVLIEG 571
S C C + C +I G
Sbjct: 295 NSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 49.4 bits (118), Expect = 2e-06
Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 15/202 (7%)
Query: 2 ASISSGNVTRVKREMNLKTVLSNL---HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL 58
S + +++ ++ V++ V + + T G N+ +
Sbjct: 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSF 115
Query: 59 EGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNI--- 115
K + + + IA+ P + + + L D
Sbjct: 116 LKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVR--RFKIDADGVLFDTGQEFI 172
Query: 116 ---QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN 172
P IT + A+ +I + + + + P + V D
Sbjct: 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDG 232
Query: 173 --LYFSTYRTNNILKINKFGNS 192
+Y T T ++ N+ +
Sbjct: 233 STVYVLTESTVDVFNFNQLSGT 254
Score = 46.7 bits (111), Expect = 2e-05
Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 19/184 (10%)
Query: 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMV---STLEGRKKRTLLNTGLNEPYDIALEPL 82
+D A+ N+ T ++ + G + D+ + P
Sbjct: 40 YDFVDTAITSDCSNVVVTSDF---CQTLVQIETQLEPPKVVAIQ--EGQSSMADVDITP- 93
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQ---WPTGITIDYPSQRLYWAD-PKAR 138
+ T G+ + S N + I GI I L D A
Sbjct: 94 DDQFAVTVTGLNHPFNMQSYSFLK--NKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN 151
Query: 139 TIESINL--NGKDRFVVYHTEDNGYKPYKLEVFEDN--LYFSTYRTNNILKINKFGNSDF 194
T+ + +G G +P+ + D + + N+I + +
Sbjct: 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211
Query: 195 NVLA 198
+L
Sbjct: 212 TLLN 215
Score = 39.0 bits (91), Expect = 0.004
Identities = 13/135 (9%), Positives = 41/135 (30%), Gaps = 21/135 (15%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMV---STLEGRKKRTLLNTGLNEPYDIALEPLSG 84
P + G + + N+I + E + T N P I +
Sbjct: 178 PFNITFTPDGNFAFVANLI---GNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233
Query: 85 RMFWTELGIKPRISGASIDGKN----KFNLVDNNI-------QWPTGITIDYPSQRLYWA 133
++ + + + + + + + + + ++ +L+ +
Sbjct: 234 TVY---VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290
Query: 134 DPKARTIESINLNGK 148
+R ++ ++GK
Sbjct: 291 ANISRELKVFTISGK 305
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 49.9 bits (118), Expect = 3e-06
Identities = 51/405 (12%), Positives = 91/405 (22%), Gaps = 46/405 (11%)
Query: 304 CKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLT 363
K P + N + C + + Q C+ +
Sbjct: 495 AKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWS 554
Query: 364 HPEPTYK-------CHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTG--DT 414
+ TYK + AP G RCE + + Q C+ D
Sbjct: 555 TCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDL 614
Query: 415 CQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSIT--DSGPKC 472
+ + C N E + G++ + S + G G
Sbjct: 615 PEIEADSGCPQPVPPENGFIRNEKQL--YLVGEDVEISCLTGFETVGYQYFRCLPDGTWR 672
Query: 473 MCSPGYSGKKCDTCTCLNGDSGP------------KCMCSPGYSGKKCDTCTCLNG---- 516
+C + + C G+ TC
Sbjct: 673 QGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWTP 732
Query: 517 --------GTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVL 568
C+ + +G C C + C + + + C +
Sbjct: 733 PISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDC----SHHSEDLCVFDTDSND 788
Query: 569 IEGKPSCKCLPPY-SGKQCTEREDSPSCHNYCD-NAGLCSYSKQGKPVCTCVNGWSGITC 626
P+CK L Q SC + GL G+ TC
Sbjct: 789 YFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYD--TC 846
Query: 627 SERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671
+ C+ + C + C+ + +
Sbjct: 847 YDWEKCSAST-SKCVCLLPPQCFKGGNQLYCVKMGSSTSEKTLNI 890
Score = 36.0 bits (82), Expect = 0.054
Identities = 28/191 (14%), Positives = 36/191 (18%), Gaps = 11/191 (5%)
Query: 370 KCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVC 429
AP R + C N P C C N G
Sbjct: 463 DFELAPIVDLVR--NIPCAVTKRNNLRKALQEYAAKFDP---------CQCAPCPNNGRP 511
Query: 430 VNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCL 489
T C C YG+NC+ + C Y + C
Sbjct: 512 TLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNP 571
Query: 490 NGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCA 549
G K + C N G N + + C
Sbjct: 572 APQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPEN 631
Query: 550 SLANKCTPNYC 560
Y
Sbjct: 632 GFIRNEKQLYL 642
Score = 30.6 bits (68), Expect = 2.5
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 4/117 (3%)
Query: 528 CKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587
PSQ+ G+ C + + C G+ + L C
Sbjct: 85 VLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCG 144
Query: 588 EREDSPSCHNYCDNAGLCSYSKQGKP-VCTCVNGWSGITCSERVSCAHFCFNGGTCR 643
+ D C +C+ P V NG+ + R F GG C+
Sbjct: 145 DNSDERDC---GRTKAVCTRKYNPIPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICK 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-06
Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 65/175 (37%)
Query: 1 MASISSGNVTRVKREMNLKTVLSNLHDPRG----VAVDWVGKNLYWTDAGGRSSNNIMVS 56
M SIS N+T+ + + + N H P G +++ N + N++VS
Sbjct: 338 MLSIS--NLTQEQVQDYVNKT--NSHLPAGKQVEISL----VN---------GAKNLVVS 380
Query: 57 ----TLEG-----RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107
+L G RK + +GL D + P S R K + S N+
Sbjct: 381 GPPQSLYGLNLTLRKAKA--PSGL----DQSRIPFSER--------KLKFS-------NR 419
Query: 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKART---IESINLNGKD-RFVVYHTED 158
F L P + + S L A +++ N KD + VY T D
Sbjct: 420 F-L-------P--VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Score = 43.5 bits (102), Expect = 3e-04
Identities = 58/303 (19%), Positives = 101/303 (33%), Gaps = 104/303 (34%)
Query: 75 YDIALEPLSGRMFWTELGIK-----PRIS-GASIDGKNKFNLVDNNIQWPT------GIT 122
+ + ++ +F+ +G++ P S SI + ++NN P+ +T
Sbjct: 293 FVSVRKAIT-VLFF--IGVRCYEAYPNTSLPPSILEDS----LENNEGVPSPMLSISNLT 345
Query: 123 -------IDYPSQRLYWADPKARTIESINL-NGKDRFVVYHTEDNGYKPYKLEVFEDNLY 174
++ + L P + + I+L NG VV + G P L L
Sbjct: 346 QEQVQDYVNKTNSHL----PAGKQV-EISLVNGAKNLVV--S---GP-PQSLYGLNLTLR 394
Query: 175 --------------FSTYR----TNNILKINK-FGNSDFNVLANNLNRASDVLILQENKQ 215
FS R +N L + F +S L ASD+ + ++
Sbjct: 395 KAKAPSGLDQSRIPFSE-RKLKFSNRFLPVASPF-HSHL------LVPASDL--INKDLV 444
Query: 216 AHNVTNHCDDKPCHQSALCINLPSSHT------CLCPDHLTEELN--VTSGKM---SCKV 264
+NV+ + + I P T + ++E + + + +
Sbjct: 445 KNNVS-------FNAKDIQI--PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 265 APARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFD 324
A T LD G P + L LT +G +V A T LD N D
Sbjct: 496 FKA-THILDF--G--PGGASGLGV--LTHRNKDGTG---VRVIVAGT--LDINP-----D 538
Query: 325 DDF 327
DD+
Sbjct: 539 DDY 541
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 46.3 bits (110), Expect = 2e-05
Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 37/179 (20%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPLS 83
GVA+D NL R + ++ + + G + E + ++P +
Sbjct: 23 PGQVSGVALDSKN-NLVIFH---RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN 78
Query: 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESI 143
+ GKN F P G++ID + D + +
Sbjct: 79 AEIL-------------QSSGKNLFY-------LPHGLSID-TDGNYWVTDVALHQVFKL 117
Query: 144 NLNGKDRFVVYHTEDNG--------YKPYKLEVFED--NLYFSTYRTNN-ILKINKFGN 191
+ + K+ ++ +P + V ++ S N+ I++ + G
Sbjct: 118 DPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK 176
Score = 41.3 bits (97), Expect = 8e-04
Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 31/190 (16%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG---------LNEPY 75
P VAV+ ++ +D G ++ I+ + G+ + P+
Sbjct: 142 FCQPTDVAVEPSTGAVFVSD--GYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPH 199
Query: 76 DIALEPLSG------------RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITI 123
+AL P + F T+ R + G+N F I + G
Sbjct: 200 SLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF-----AISYIPGFLF 254
Query: 124 DYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK-PYKLEVFED-NLYFSTYRTN 181
+ + Y+ D + +N + + V+ + P+ + ED +Y TN
Sbjct: 255 A-VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN 313
Query: 182 NILKINKFGN 191
+ K
Sbjct: 314 TVWKFTLTEK 323
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 46.3 bits (110), Expect = 2e-05
Identities = 23/176 (13%), Positives = 63/176 (35%), Gaps = 19/176 (10%)
Query: 26 HDPRGVAVDWVGKNLYWTDAGGRS------SNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
P G ++ + L++ + + + L ++ +P ++
Sbjct: 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA 148
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNI----QWPTGITIDYPSQRLYWADP 135
+ + ++ + +G + I +DG N + I + TG+ +D +RLY +
Sbjct: 149 DDATNTVYISGIGKESVIW--VVDGGN--IKLKTAIQNTGKMSTGLALDSEGKRLYTTNA 204
Query: 136 KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN----LYFSTYRTNNILKIN 187
I +I+ D+G + + + + D + + + +L ++
Sbjct: 205 DGELI-TIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259
Score = 39.0 bits (91), Expect = 0.004
Identities = 31/205 (15%), Positives = 56/205 (27%), Gaps = 50/205 (24%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87
PR + D +Y + G S + V + K + NTG +AL+ R++
Sbjct: 143 PRELVADDATNTVYISGIGKESVIWV-VDGGNIKLKTAIQNTG-KMSTGLALDSEGKRLY 200
Query: 88 -------------------WT----ELGIKPRISGASIDGKNKF----NLVDNNIQ---- 116
+ G + S+D + + +
Sbjct: 201 TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260
Query: 117 ------------WPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPY 164
+ + Y +A + I+ K VV T D P
Sbjct: 261 RNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDA--KSYKVV-KTFDTPTHPN 317
Query: 165 KLEVFEDN--LYFSTYRTNNILKIN 187
L + D LY S + + +
Sbjct: 318 SLALSADGKTLYVSVKQKSTKQQEA 342
Score = 36.7 bits (85), Expect = 0.020
Identities = 15/186 (8%), Positives = 48/186 (25%), Gaps = 42/186 (22%)
Query: 28 PRGVAVDWVGKNLYWTDAGGR---SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84
+A L+ + R + + ++ +P+ + +
Sbjct: 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINN-TT 100
Query: 85 RMFWT----------------------ELGIKPRISGASIDGKNKFNLVDNNIQWPTGIT 122
+ W L + R P +
Sbjct: 101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQ-------------PRELV 147
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLY-FSTYRTN 181
D + +Y + ++ + ++G + + ++ G L + + ++T
Sbjct: 148 ADDATNTVYISGIGKESVIWV-VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADG 206
Query: 182 NILKIN 187
++ I+
Sbjct: 207 ELITID 212
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 44.3 bits (103), Expect = 4e-05
Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 8/166 (4%)
Query: 458 CVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGG 517
C NG+ + CMC+ G +TC N C G C
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXN-------ECXXETLGXACGEFGQCIEN 65
Query: 518 TCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKC 577
C C YT C + + +
Sbjct: 66 PDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXV 125
Query: 578 LPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSG 623
P CT ++ + +C + +G C C+ G++
Sbjct: 126 PNPEDEXXCTXTGETACQLXCNTDNEVC-XNVEGVYXCQCMEGFTF 170
Score = 36.2 bits (82), Expect = 0.017
Identities = 22/171 (12%), Positives = 38/171 (22%), Gaps = 21/171 (12%)
Query: 383 ESRICENKCHNGGTCIATTQT--CVCPPGFTGDTCQQC----------LNLKCQNGGVCV 430
S + + G + + C+C G + C L C G C+
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCI 63
Query: 431 NKTT-----GLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDT 485
C C + Y + + + +G C
Sbjct: 64 ENPDPAQVNMYXCGCIEGYTLXEDT-CVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAI 122
Query: 486 CTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTG 536
N + C C + C C+C +T
Sbjct: 123 GXVPNPEDEXXCT---XTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 35.0 bits (79), Expect = 0.043
Identities = 22/165 (13%), Positives = 36/165 (21%), Gaps = 6/165 (3%)
Query: 507 KCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSC--ASLANKCTPNYCSNNG 564
T G + S + C C C +L C
Sbjct: 6 AVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIEN 65
Query: 565 TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCS--YSKQGKPVCTCVNGWS 622
C C+ Y+ + T D N ++ S+ C+C G
Sbjct: 66 PDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXV 125
Query: 623 GITCSERVSCA--HFCFNGGTCREQNYSLDPDLKPICICPRGYAG 665
E + + + C C G+
Sbjct: 126 PNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 33.5 bits (75), Expect = 0.14
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 9/127 (7%)
Query: 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGK---------QCTEREDSPSCHNYCDNA 602
A+ T + NG V + C C +C +C +
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCI 63
Query: 603 GLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRG 662
++ C C+ G++ + + + G + L C C G
Sbjct: 64 ENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
Query: 663 YAGVRCQ 669
Sbjct: 124 XVPNPED 130
Score = 33.1 bits (74), Expect = 0.16
Identities = 20/152 (13%), Positives = 30/152 (19%), Gaps = 16/152 (10%)
Query: 342 CEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATT 401
C Y C C YT + + N G
Sbjct: 47 CXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECI 106
Query: 402 QTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNG 461
+ G +C ++ C E C N
Sbjct: 107 VEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTG---ETACQL------------XCNTDNE 151
Query: 462 ECSITDSGPKCMCSPGYSGKKCDTCTCLNGDS 493
C + C C G++ + CL
Sbjct: 152 VCXNVEGVYXCQCMEGFTF-DXEXNVCLGPHH 182
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 42.0 bits (98), Expect = 5e-05
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 553 NKCTPNYCSNNGTCVLIE-GKPSCKCLPPYSGKQCTEREDSPSCHNY---CDNAGLCSYS 608
+KC N C G +CL + S +C C C+
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 609 KQGKPVCTCVNGWS-----GITCSERVSCAHF 635
+ + C C S G+ CS H
Sbjct: 71 DKKEVECKCTKEGSEPLFEGVFCSSSSGPHHH 102
Score = 27.8 bits (61), Expect = 4.3
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 504 SGKKCDTCTCLNGGTCIPNSKNN-VCKCPSQYTGRRCECAVGDTSCASLANKCTPN-YCS 561
S KC C +C + +C +C C P C+
Sbjct: 9 SAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECT 68
Query: 562 NNGTCVLIEGKPSCKCLPPYSG 583
+ + + CKC S
Sbjct: 69 MDD-----KKEVECKCTKEGSE 85
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 42.7 bits (101), Expect = 7e-05
Identities = 28/143 (19%), Positives = 41/143 (28%), Gaps = 28/143 (19%)
Query: 456 NYCVNGECSITDSGPKCMCSPGYSGKKC-------DTCTCLNGDSGPKCMCSPGYSGKKC 508
+ C+NG C + C CS + TC +C + + K
Sbjct: 10 SPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKS 69
Query: 509 DTCTCLNGGTCIPNSKNNV-CKCPSQYTGRRC-------ECAVGDTSCASLANKCTPNYC 560
C+ L P + V C Y+ + EC V C
Sbjct: 70 QCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVC------------ 117
Query: 561 SNNGTCVLIEGKPSCKCLPPYSG 583
NG CV G C+C +
Sbjct: 118 -KNGLCVNTRGSFKCQCPSGMTL 139
Score = 41.2 bits (97), Expect = 2e-04
Identities = 30/137 (21%), Positives = 42/137 (30%), Gaps = 22/137 (16%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYS-------QCKNYCVNGECSITDSGP 470
C + C NG VC N C+C + C ++G C I +G
Sbjct: 7 CESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGA 65
Query: 471 KCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCT----------CLNGGTCI 520
S C +C GYS K C G C+
Sbjct: 66 TLKSQCCSSLGAAWGSPCTLC--QVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCV 123
Query: 521 PNSKNN-VCKCPSQYTG 536
N++ + C+CPS T
Sbjct: 124 -NTRGSFKCQCPSGMTL 139
Score = 39.6 bits (93), Expect = 6e-04
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 20/126 (15%)
Query: 330 HCICQENFYGTYCEK--VNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRIC 387
C C + + C + + + + ++C S +
Sbjct: 25 ICECSSESTLDPTKTICIETIKGTCWQTVIDG--------RCEININGATLKSQCCSSLG 76
Query: 388 ENKCHNGGTCIATTQTCVCPPGFTGDTCQQC-------LNLKCQNGGVCVNKTTGLECDC 440
G C +C G++ QC + G+CVN +C C
Sbjct: 77 ---AAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQC 133
Query: 441 PKFYYG 446
P
Sbjct: 134 PSGMTL 139
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 43.1 bits (101), Expect = 7e-05
Identities = 34/168 (20%), Positives = 44/168 (26%), Gaps = 12/168 (7%)
Query: 381 RCESRICENKCHNGGTCIA----TTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNK---- 432
RC + +C N C C G C Q GG
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCC 61
Query: 433 TTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGD 492
+ C Y G CQ C+ G + P +C + + C G
Sbjct: 62 SQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGC 121
Query: 493 SGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C + GK C N C SK C Y G C+
Sbjct: 122 QSGAC-STDKPCGKDAGGRVCTNNYCC---SKWGSCGIGPGYCGAGCQ 165
Score = 30.4 bits (68), Expect = 1.1
Identities = 41/179 (22%), Positives = 52/179 (29%), Gaps = 25/179 (13%)
Query: 416 QQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCS 475
+Q N++C N C C Y GK CQ C G + + C
Sbjct: 5 EQGSNMECPNNLCCSQYGY---CGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCC 61
Query: 476 PGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCD---TCTCLNGGTCIPN----SKNNVC 528
Y C C G G C C GG PN S+ C
Sbjct: 62 SQY-----GYCGF------GAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFC 110
Query: 529 KCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587
S++ G C+ T + C+NN C SC P Y G C
Sbjct: 111 GLGSEFCGGGCQSGACSTDKPCGKD-AGGRVCTNNYCCS---KWGSCGIGPGYCGAGCQ 165
Score = 28.8 bits (64), Expect = 4.1
Identities = 29/167 (17%), Positives = 40/167 (23%), Gaps = 28/167 (16%)
Query: 330 HCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYK--------CHCAPSYTGAR 381
+C ++ G C+ T+ + + +C G
Sbjct: 23 YCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGP 82
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCP 441
C + I G C C GF G + C G C
Sbjct: 83 CRADIKCGSQAGGKLC--PNNLCCSQWGFCGLGSEFC----------------GGGCQSG 124
Query: 442 KFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTC 488
K C C N C C PGY G C + C
Sbjct: 125 ACSTDKPCGKDAGGRVCTNNYCCSKWG--SCGIGPGYCGAGCQSGGC 169
Score = 28.1 bits (62), Expect = 8.2
Identities = 32/182 (17%), Positives = 39/182 (21%), Gaps = 22/182 (12%)
Query: 449 CQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKC 508
C C N C C Y GK C C C G C
Sbjct: 3 CGEQGSNMECPNNLCCSQYG--YCGMGGDYCGKGCQNGAC-----WTSKRCGSQAGGATC 55
Query: 509 DTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVL 568
C S+ C ++Y G C+ N C
Sbjct: 56 TNNQC--------CSQYGYCGFGAEYCGAGCQGGPCRADIKC--GSQAGGKLCPNNLCCS 105
Query: 569 IEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQ---GKPVCTCVNGWSGIT 625
G C + G C S D G + C G+ G
Sbjct: 106 QWG--FCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAG 163
Query: 626 CS 627
C
Sbjct: 164 CQ 165
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 44.1 bits (103), Expect = 7e-05
Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 22/162 (13%)
Query: 437 ECDCPKFYYGKNCQYSQCKNYCVN--GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSG 494
+ C +N C +N + + +C+ + + +
Sbjct: 122 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 181
Query: 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANK 554
P+C C + D C G +C+C + Y G+ CEC S L
Sbjct: 182 PQCECR--CRDQSRDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQELEGS 235
Query: 555 CTPN----YCSNNGTCVLIEGKPSCKCLPP------YSGKQC 586
C + CS G CV G+ C C G+ C
Sbjct: 236 CRKDNNSIICSGLGDCV--CGQ--CLCHTSDVPGKLIYGQYC 273
Score = 39.5 bits (91), Expect = 0.002
Identities = 26/160 (16%), Positives = 38/160 (23%), Gaps = 13/160 (8%)
Query: 395 GTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQC 454
+ C C ++ K T EC + + + ++
Sbjct: 116 TLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDI 175
Query: 455 KNYCVNG--ECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCT 512
V EC D G +C C C G G C C + +
Sbjct: 176 VTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGS 235
Query: 513 CLNGGTCIPNSKNNVCKC-----------PSQYTGRRCEC 541
C I S C C G+ CE
Sbjct: 236 CRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCEH 275
Score = 31.7 bits (71), Expect = 0.61
Identities = 22/151 (14%), Positives = 33/151 (21%), Gaps = 24/151 (15%)
Query: 485 TCTCLNGDSGP---KCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCEC 541
C NG + + C + CI + +T
Sbjct: 122 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQE--QSFVIRALGFTDIVTVQ 179
Query: 542 AVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDN 601
+ C + C G C+C Y GK C + S
Sbjct: 180 VLPQCECRCRDQSRDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQE---- 231
Query: 602 AGLCSYSKQGKPVCTCVNGWSGITCSERVSC 632
+C + I CS C
Sbjct: 232 -----------LEGSCRKDNNSIICSGLGDC 251
Score = 29.4 bits (65), Expect = 4.0
Identities = 23/137 (16%), Positives = 35/137 (25%), Gaps = 18/137 (13%)
Query: 510 TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLI 569
C NG N C + V T C + + V +
Sbjct: 122 DSFCSNG-VTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 180
Query: 570 EGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSER 629
+ C+C D + C G +C C G+ G C +
Sbjct: 181 LPQCECRC------------RDQSRDRSLCHGKGFLECG-----ICRCDTGYIGKNCECQ 223
Query: 630 VSCAHFCFNGGTCREQN 646
G+CR+ N
Sbjct: 224 TQGRSSQELEGSCRKDN 240
Score = 28.7 bits (63), Expect = 6.0
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 29/96 (30%)
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ-------------QCLN----LKCQ 424
+ + CH G C C G+ G C+ C + C
Sbjct: 189 RDQSRDRSLCHGKGFLEC--GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICS 246
Query: 425 NGGVCVNKTTGLECDC------PKFYYGKNCQYSQC 454
G CV +C C K YG+ C++
Sbjct: 247 GLGDCVCG----QCLCHTSDVPGKLIYGQYCEHHHH 278
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 42.3 bits (100), Expect = 1e-04
Identities = 21/138 (15%), Positives = 30/138 (21%), Gaps = 28/138 (20%)
Query: 403 TCVCPPGFTGD----TCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC 458
C CPP F + C + C C
Sbjct: 25 ICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA 84
Query: 459 VNGECSI------TDSGPKCMCSPGYSGKK-----------------CDTCTCLNGDSGP 495
C + ++ C G+ C C+N
Sbjct: 85 WGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSF 144
Query: 496 KCMCSPGYSGKKCDTCTC 513
+C C GY + DT C
Sbjct: 145 QCRCPTGYYLNE-DTRVC 161
Score = 39.7 bits (93), Expect = 0.001
Identities = 14/108 (12%), Positives = 22/108 (20%), Gaps = 14/108 (12%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKC-------DTCTCLNGGTCIPNSKNNVCKCPSQYTGRRC 539
C+N C C P + + C ++ + C +
Sbjct: 16 NCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKA 75
Query: 540 ECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587
C K C E K C + T
Sbjct: 76 SCCCSL-------GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPIT 116
Score = 30.0 bits (68), Expect = 1.5
Identities = 19/122 (15%), Positives = 27/122 (22%), Gaps = 12/122 (9%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGK 612
N+C +G CV G C C P + + C G
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPT-RVGCVDTRSGNCYLDIRPR-GDNGD 61
Query: 613 PVCTCVNGWSGI----TCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRC 668
C+ G CS + C Y +C G+
Sbjct: 62 TACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYK------ILCPGGEGFRPNPI 115
Query: 669 QT 670
Sbjct: 116 TV 117
Score = 28.9 bits (65), Expect = 3.5
Identities = 32/203 (15%), Positives = 44/203 (21%), Gaps = 61/203 (30%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLP 280
N C D S C+N P S+ C CP C D GN
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPT------------RVGCV-DTRSGNCY 50
Query: 281 SSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGT 340
+G D C + +
Sbjct: 51 LDIRPRG----------DNG---------------------------DTACSNEIGVGVS 73
Query: 341 YCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE--------NKCH 392
+ P + E C + + I E
Sbjct: 74 KASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPI-TVILEDIDECQELPGLC 132
Query: 393 NGGTCIAT--TQTCVCPPGFTGD 413
GG CI T + C CP G+ +
Sbjct: 133 QGGKCINTFGSFQCRCPTGYYLN 155
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 44.2 bits (104), Expect = 1e-04
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 548 CASLANKCTPNYCSNNGTCVLIEGKPSCKC-LPPYSGKQCTEREDSPSCHNYCDNAGLCS 606
C + C + CSN G C+ SC C + +SG C D + + + G +
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC---NDPGTTYIFSKGGGQIT 237
Query: 607 YSKQ 610
Y
Sbjct: 238 YKWP 241
Score = 43.8 bits (103), Expect = 1e-04
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 414 TCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY-GKNCQYSQCKNYCVNGECSITDSGPK 471
C C N GVC+ + G CDC + G C G IT P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP 242
Score = 37.3 bits (86), Expect = 0.014
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 490 NGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCP-SQYTGRRCE 540
NG C C +C N G C+ C C + ++G C
Sbjct: 174 NGQIERGCEGPST----TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN 221
Score = 35.4 bits (81), Expect = 0.061
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 379 GARCESRICE-NKCHNGGTCIA--TTQTCVCP-PGFTGDTCQQCLNLKCQNGG 427
G S C+ + C N G C+ +C C F+G C + G
Sbjct: 180 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 33.4 bits (76), Expect = 0.25
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 14/71 (19%)
Query: 329 PHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCA-PSYTGARCESRIC 387
C C NQG+C + C C+ S++G C
Sbjct: 179 RGCEGPSTTC---------QEDSCSNQGVCLQQWD----GFSCDCSMTSFSGPLCNDPGT 225
Query: 388 ENKCHNGGTCI 398
GG I
Sbjct: 226 TYIFSKGGGQI 236
Score = 31.9 bits (72), Expect = 0.71
Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 449 CQYSQCKNYCVNGECSITDSGPKCMCS-PGYSGKKCDTCTCLNGDSGPKCMCS 500
CQ C N G C G C CS +SG C+ S +
Sbjct: 188 CQEDSCSN---QGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQIT 237
Score = 31.1 bits (70), Expect = 1.4
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 220 TNHCDDKPCHQSALCINLPSSHTCLCPDH 248
+ C + C +C+ +C C
Sbjct: 185 STTCQEDSCSNQGVCLQQWDGFSCDCSMT 213
Score = 30.0 bits (67), Expect = 2.8
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 16/89 (17%)
Query: 588 EREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNY 647
E + + C N G C+ W G +C C+ F+G C +
Sbjct: 182 EGPSTTCQEDSCSNQG------------VCLQQWDGFSC----DCSMTSFSGPLCNDPGT 225
Query: 648 SLDPDLKPICICPRGYAGVRCQTLVHYIS 676
+ I + R T ++
Sbjct: 226 TYIFSKGGGQITYKWPPNDRPSTRADRLA 254
Score = 28.4 bits (63), Expect = 9.9
Identities = 8/45 (17%), Positives = 10/45 (22%), Gaps = 2/45 (4%)
Query: 316 CNHGTCEFDDDFDPHCICQENFY-GTYCEKVNNSMCPCLNQGMCY 359
N G C C C + G C + G
Sbjct: 194 SNQGVC-LQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQIT 237
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 43.5 bits (102), Expect = 1e-04
Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 24/175 (13%)
Query: 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
+ GK +Y N I+ E K L G+ P + ++ +M
Sbjct: 132 STEQMVQY--GKYVYVNCWS--YQNRILKIDTETDKVVDELTIGIQ-PTSLVMDK-YNKM 185
Query: 87 FWTELGIKPRISGASIDGK-NKFNLVDNNI---------QWPTGITIDYPSQRLYWADPK 136
+ G + + + WP+ + ++ LYW +
Sbjct: 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-- 243
Query: 137 ARTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFST---YRTNNILKI 186
I + + V E K Y L V +Y + Y+ I+
Sbjct: 244 -NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297
Score = 37.3 bits (86), Expect = 0.012
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNN-IMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
G+ V+ +Y DA + + +G+ G+ P +
Sbjct: 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDE-FYVGII-PGAFCWKL 321
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 43.7 bits (103), Expect = 1e-04
Identities = 28/212 (13%), Positives = 60/212 (28%), Gaps = 28/212 (13%)
Query: 2 ASISSGNVTRVKREMNLKT--VLSNL----HDPRGVAVDWVGKNLYWTDAGGRSSNNIMV 55
+ + + V +LKT + + + + D + +Y S +I V
Sbjct: 186 SQMQANAVHVF----DLKTLAYKATVDLTGKWSKILLYDPIRDLVY---CSNWISEDISV 238
Query: 56 STLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGAS----IDGKNKFNLV 111
+ + + + P + L ++ + + SG +
Sbjct: 239 IDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK--EKL 295
Query: 112 DNNI---QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV 168
+ I I ++Y +D IE +L V + KP + +
Sbjct: 296 IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL---KEKKVQKSIPVFDKPNTIAL 352
Query: 169 FEDN--LYFSTYRTNNILKINKFGNSDFNVLA 198
D LY S N+ + +
Sbjct: 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384
Score = 36.4 bits (84), Expect = 0.030
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 20/135 (14%)
Query: 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
+ R + +Y +D + I V L+ +K + + ++P IAL P +
Sbjct: 304 NKRHIVSGNTENKIYVSDMC---CSKIEVYDLKEKKVQKSIPVF-DKPNTIALSPDGKYL 359
Query: 87 F-----------WTELGIKPRISGASIDGKNKFNLVDNNI---QWPTGITIDYPSQRLYW 132
+ ID + V PTG+ + ++ L
Sbjct: 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT--DTVKEFWEAGNQPTGLDVSPDNRYLVI 417
Query: 133 ADPKARTIESINLNG 147
+D I +G
Sbjct: 418 SDFLDHQIRVYRRDG 432
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 43.7 bits (102), Expect = 2e-04
Identities = 22/146 (15%), Positives = 33/146 (22%), Gaps = 8/146 (5%)
Query: 349 MCPCLNQGMCYPDLTHPEPTYKCHCAPSYTG----ARCESRICENKCHNGGTCIATTQTC 404
+PT S RC + C C
Sbjct: 229 FLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQC 288
Query: 405 VCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPK-FYYGKNCQYSQC---KNYCVN 460
C G +C +C Q + EC + +C Y + N
Sbjct: 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQN 348
Query: 461 GECSITDSGPKCMCSPGYSGKKCDTC 486
+ G C +G C+ C
Sbjct: 349 QDNVYQGGGVCLDCQHHTTGINCERC 374
Score = 36.4 bits (83), Expect = 0.032
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 319 GTCEFDDDFDPHCICQENFYGTYCEK-------VNNSMCPCLNQGMCYPDLTHPEPTYKC 371
+ D F C CQ N G C++ + C H Y C
Sbjct: 276 DAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHG-HAYDC 334
Query: 372 HCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC 418
+ P S+ +N GG C C TG C++C
Sbjct: 335 YYDPEVDRREA-SQNQDNVYQGGGVC------LDCQHHTTGINCERC 374
Score = 29.5 bits (65), Expect = 4.4
Identities = 20/157 (12%), Positives = 31/157 (19%), Gaps = 23/157 (14%)
Query: 478 YSGKKCDTCTCLNGDSGPKCMCSPGYSGK---KCDTCTCLNGGTCIPNSKNN-----VCK 529
P YS K C C C
Sbjct: 230 LRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCA 289
Query: 530 CPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTER 589
C G C+ +C P + N + +C +
Sbjct: 290 CQHNTCGGSCD-------------RCCPGF--NQQPWKPATTDSANECQSCNCHGHAYDC 334
Query: 590 EDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITC 626
P + + + G C + +GI C
Sbjct: 335 YYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINC 371
Score = 28.3 bits (62), Expect = 9.4
Identities = 18/127 (14%), Positives = 25/127 (19%), Gaps = 25/127 (19%)
Query: 548 CASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE----REDSPSCHNYCDNAG 603
C A+ C + C C G C P D+A
Sbjct: 268 CHGHADVCDAKDPLDPFRLQ-------CACQHNTCGGSCDRCCPGFNQQPWKPATTDSAN 320
Query: 604 LCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGY 663
C C + + GG C C
Sbjct: 321 ECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVC--------------LDCQHHT 366
Query: 664 AGVRCQT 670
G+ C+
Sbjct: 367 TGINCER 373
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 43.7 bits (103), Expect = 2e-04
Identities = 16/128 (12%), Positives = 27/128 (21%), Gaps = 15/128 (11%)
Query: 499 CSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTS--------CAS 550
G + L+G + + C S + C
Sbjct: 260 SESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQK 319
Query: 551 LANKCTP----NYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCS 606
L Y +C EGK C L S T+ +
Sbjct: 320 LCTNAVRCQFFTYTPAQASCN--EGKGKC-YLKLSSNGSPTKILHGRGGISGYTLRLCKM 376
Query: 607 YSKQGKPV 614
++ +
Sbjct: 377 DNECTTKI 384
Score = 38.3 bits (89), Expect = 0.009
Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 18/144 (12%)
Query: 402 QTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNG 461
C+ +G + K +G + + C +Y + + V
Sbjct: 253 NLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELD-IVAA 311
Query: 462 ECSITDSGPKC--MCSPGYS----GKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLN 515
+ C +C+ +C G KC +G + T +
Sbjct: 312 KSH-----EACQKLCTNAVRCQFFTYTPAQASCNEG--KGKCYLKLSSNG----SPTKIL 360
Query: 516 GGTCIPNSKNNVCKCPSQYTGRRC 539
G + +
Sbjct: 361 HGRGGISGYTLRLCKMDNECTTKI 384
Score = 37.5 bits (87), Expect = 0.017
Identities = 13/142 (9%), Positives = 31/142 (21%), Gaps = 14/142 (9%)
Query: 537 RRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGK--------QCTE 588
+R C + + + + + + + C +
Sbjct: 251 QRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVA 310
Query: 589 REDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYS 648
+ +C C NA C + +C G + + G Y+
Sbjct: 311 AKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYT 370
Query: 649 LDPDLKPICICPRGYAGVRCQT 670
L + +
Sbjct: 371 LR------LCKMDNECTTKIKP 386
Score = 35.2 bits (81), Expect = 0.075
Identities = 17/141 (12%), Positives = 28/141 (19%), Gaps = 11/141 (7%)
Query: 455 KNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKC-----D 509
+N C+ + S SG +C C +
Sbjct: 252 RNLCLLKTSESGLPSTRIKKSKALSGFSLQSCR-----HSIPVFCHSSFYHDTDFLGEEL 306
Query: 510 TCTCLNG-GTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVL 568
C N V YT + C G C + +G +
Sbjct: 307 DIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGI 366
Query: 569 IEGKPSCKCLPPYSGKQCTER 589
+ + R
Sbjct: 367 SGYTLRLCKMDNECTTKIKPR 387
Score = 33.7 bits (77), Expect = 0.26
Identities = 19/145 (13%), Positives = 30/145 (20%), Gaps = 10/145 (6%)
Query: 283 HTCLCPDHLTEELNVTSGKMSCKVAPARTCYLD--------CNHGTCEFDDDFDPHCICQ 334
CL ++E S + C + L G C
Sbjct: 234 PGCLFFTFFSQEWPKESQRNLCLL-KTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCH 292
Query: 335 ENFYGTYCEKVNNSMCPCLN-QGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHN 393
+FY C T+ P+ C K +
Sbjct: 293 SSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSS 352
Query: 394 GGTCIATTQTCVCPPGFTGDTCQQC 418
G+ G+T C+
Sbjct: 353 NGSPTKILHGRGGISGYTLRLCKMD 377
Score = 31.4 bits (71), Expect = 1.4
Identities = 24/168 (14%), Positives = 44/168 (26%), Gaps = 20/168 (11%)
Query: 234 CINLPSSH-TCLCPDHLTEELNVTSGKMSCKVAPARTCYLD--------CNHG----NLP 280
C + + H CL ++E S + C + L G +
Sbjct: 226 CGRICTHHPGCLFFTFFSQEWPKESQRNLCLL-KTSESGLPSTRIKKSKALSGFSLQSCR 284
Query: 281 SSHTCLCPDHLTEELNVTSGKMSCKVAP-ARTCYLDCNHGT-CEFDDDFDPHCICQENFY 338
S C + + ++ A C C + C+F C E
Sbjct: 285 HSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKG 344
Query: 339 GTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRI 386
Y + +N + G T + + + + RI
Sbjct: 345 KCYLKLSSNGSPTKILHGRG----GISGYTLRLCKMDNECTTKIKPRI 388
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 41.3 bits (97), Expect = 2e-04
Identities = 35/171 (20%), Positives = 50/171 (29%), Gaps = 38/171 (22%)
Query: 390 KCHNGGTCIATTQT-----CVCPPGFTGDTCQQCLNLKCQN-GGVCVNKTTGLECDCPKF 443
C G +C +T CP G G C+ C + + G C C
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND- 60
Query: 444 YYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC---------TCLNGDSG 494
C + GEC C +G CD C D
Sbjct: 61 -NIDPNAVGNCNR--LTGEC--------LKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 109
Query: 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE-CAVG 544
C C+P + ++ +C + G C+C +GR C C G
Sbjct: 110 KACACNPYGTVQQQSSCNPVTG----------QCQCLPHVSGRDCGTCDPG 150
Score = 32.9 bits (75), Expect = 0.20
Identities = 26/164 (15%), Positives = 42/164 (25%), Gaps = 43/164 (26%)
Query: 285 CLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHC-ICQENFYGTYCE 343
C CP + + + ++ C C GT C +C + ++G
Sbjct: 1 CPCPGGSSCAIVPKTKEVVC---------THCPTGTA------GKRCELCDDGYFGDPLG 45
Query: 344 KVNNSM----CPC-LNQGMCYPDLTHPEPTYKCHCAPSYTGARCE-----------SRIC 387
C C N + C + G C+ +
Sbjct: 46 SNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNP 105
Query: 388 ENKC-----------HNGGTCIATTQTCVCPPGFTGDTCQQCLN 420
+KC +C T C C P +G C C
Sbjct: 106 ADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDP 149
Score = 30.5 bits (69), Expect = 0.88
Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 38/139 (27%)
Query: 484 DTCTCLNGDSGPKCMCSPGYSGKKCDTC----------TCLNGGTCIP------------ 521
C G +GK+C+ C + C P
Sbjct: 8 SCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAV 67
Query: 522 ---NSKNNVC-KCPSQYTGRRCE-CA---VGDTSCASLANKCTPNYCSNNGT------CV 567
N C KC G C+ C G+ + A+KC C+ GT C
Sbjct: 68 GNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCN 127
Query: 568 LIEGKPSCKCLPPYSGKQC 586
+ G+ C+CLP SG+ C
Sbjct: 128 PVTGQ--CQCLPHVSGRDC 144
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 43.2 bits (101), Expect = 2e-04
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 16/138 (11%)
Query: 357 MCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNG-----GTCIATTQTCVCPPGFT 411
+ + E + SY A + + NG C C
Sbjct: 222 LNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTY 281
Query: 412 GDTCQQCL---NLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDS 468
G C++CL N + + + L CDC ++ G C
Sbjct: 282 GVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHC----- 336
Query: 469 GPKCMCSPGYSGKKCDTC 486
C G KC+ C
Sbjct: 337 ---TNCRDNTDGAKCERC 351
Score = 41.7 bits (97), Expect = 6e-04
Identities = 33/231 (14%), Positives = 60/231 (25%), Gaps = 39/231 (16%)
Query: 342 CEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTG--ARCESRICENKCHNGGTCIA 399
C + + P + + L Y +P + R+ N+ + G +
Sbjct: 174 CTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVF 233
Query: 400 TTQTCVCPPGFTGDTCQQCLNLKCQNGGVCV--NKTTGLECDCPKFYYGKNCQYSQCKNY 457
+ + KC N+ L C+C YG +C+
Sbjct: 234 NEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEK------ 287
Query: 458 CVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCL--- 514
C P ++ + T + C C+ D
Sbjct: 288 ----------------CLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTG 331
Query: 515 NGGTCIPNSKNNVCKCPSQYTGRRCE-CAVGDTSCASLANKCTPNYCSNNG 564
+GG C C G +CE C + C+P ++
Sbjct: 332 HGGHC--------TNCRDNTDGAKCERCRENFFRLGN-TEACSPAAAHHHH 373
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 40.4 bits (95), Expect = 3e-04
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 20/114 (17%)
Query: 418 CLNLKCQNGGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNGECS---ITDSGPKCM 473
C C+ C C C + + + +C+ +C C ++ C
Sbjct: 7 CFRANCEYQ--CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCE 64
Query: 474 CSPGYSGKKCDTCT--------------CLNGDSGPKCMCSPGYSGKKCDTCTC 513
C GY CT C N +C+C P + C
Sbjct: 65 CPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 38.9 bits (91), Expect = 8e-04
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 369 YKCHCAPSYTGARCESRICENKCHNGG---TCIATTQ-TCVCPPGFTGDTCQQCLNL-KC 423
Y C CA + E C+ C+ C TQ +C CP G+ D C ++ +C
Sbjct: 24 YLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDEC 83
Query: 424 QNGG----VCVNKTTGLECDCPKFYYG 446
+NGG VC N EC C
Sbjct: 84 ENGGFCSGVCHNLPGTFECICGPDSAL 110
Score = 35.8 bits (83), Expect = 0.009
Identities = 25/121 (20%), Positives = 33/121 (27%), Gaps = 23/121 (19%)
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLE 437
C CE +C CVC GF + Q + C T
Sbjct: 7 CFRANCEYQCQPLDQTSY---LCVCAEGFAPIPHEPHRCQMFCNQTACPADCDP-NTQAS 62
Query: 438 CDCPKFYY---GKNCQ-------YSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCT 487
C+CP+ Y G C C C N +C+C P +
Sbjct: 63 CECPEGYILDDGFICTDIDECENGGFCSGVCHN-----LPGTFECICGPDSALAGQIGTD 117
Query: 488 C 488
C
Sbjct: 118 C 118
Score = 32.7 bits (75), Expect = 0.094
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 20/87 (22%)
Query: 449 CQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGD------------SGPK 496
C + C+ C + + C+C+ G++ + C +
Sbjct: 7 CFRANCEYQCQP----LDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQAS 62
Query: 497 CMCSPGYSGKKCDTCT----CLNGGTC 519
C C GY CT C NGG C
Sbjct: 63 CECPEGYILDDGFICTDIDECENGGFC 89
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 42.4 bits (99), Expect = 3e-04
Identities = 26/193 (13%), Positives = 49/193 (25%), Gaps = 43/193 (22%)
Query: 368 TYKCHCAPSYTGARCESRI--CENK-------CHNGGTCIATTQTCVCPPGFTGDTCQQC 418
TY + G + EN+ GG + G
Sbjct: 52 TYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVL---------GARDKQNIVA 102
Query: 419 LNLKCQNGGVCVNKTTGLECDCPKFYYGKNC---------QYSQCKNYCVN-GECSITDS 468
+++K +GG + TT + P + + Q+ + G +
Sbjct: 103 VSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTR 162
Query: 469 GPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK-------------CDTCTCLN 515
G + + + D L+G G+ G T
Sbjct: 163 GKQNVINVDAKSN--DGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNP 220
Query: 516 GGTCIPNSKNNVC 528
GG + ++N
Sbjct: 221 GGFWMIGARNGQN 233
Score = 37.0 bits (85), Expect = 0.016
Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 23/170 (13%)
Query: 368 TYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGG 427
TY + + + GG+ V G G ++ K +GG
Sbjct: 119 TYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGG 178
Query: 428 VCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCT 487
++ T + P + G Y V + + P +PG
Sbjct: 179 KTLSGTMTYNGEGPIGFRGTLTSPD---TYTVENQWG-GSTAP---WNPG--------GF 223
Query: 488 CLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGR 537
+ G + + + + +GG + + + P + R
Sbjct: 224 WMIGARNGQNVVALNVASS--------DGGKTLAGTMIYNGEGPIGFRAR 265
Score = 30.1 bits (67), Expect = 2.5
Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 26/150 (17%)
Query: 419 LNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGY 478
L++K +GG + T + P + G + NY V + G PG
Sbjct: 36 LDIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSAN---NYTVENQW----GGTSAPWQPG- 87
Query: 479 SGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRR 538
+ G + + + +GG + + + P +
Sbjct: 88 -------GVWVLGARDKQNIV--------AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEV 132
Query: 539 CECAVGDTSCASLANKCTPNYCSNNGTCVL 568
+ P + G VL
Sbjct: 133 TDGDTYSVE-NQWGGSAAP--WHSGGVWVL 159
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 38.0 bits (88), Expect = 5e-04
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
CLN C+ P Y C CA + G RCE +
Sbjct: 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
Score = 36.1 bits (83), Expect = 0.002
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 493 SGPKCMCSPGYSGKKCDTCTCLNGGTC----IPNSKNNVCKCPSQYTGRRCE 540
+ P C + D CLN C I + C+C + G+RCE
Sbjct: 1 TFPTYKCPETF-----DAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 34.1 bits (78), Expect = 0.011
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 635 FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
+C N C + C C G+ G RC+
Sbjct: 15 YCLNDAHC--FAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 33.7 bits (77), Expect = 0.014
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 381 RCESRICENKCHNGGTCI------ATTQTCVCPPGFTGDTCQ 416
+C C N C +C C GF G C+
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 29.5 bits (66), Expect = 0.45
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 558 NYCSNNGTCVLIEG----KPSCKCLPPYSGKQC 586
YC N+ C ++ SC+C + G++C
Sbjct: 14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 27.2 bits (60), Expect = 3.4
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 400 TTQTCVCPPGFTGDTCQQCLNLKCQNGGVC----VNKTTGLECDCPKFYYGKNCQYSQ 453
T T CP F C N C + C+C + G+ C+Y +
Sbjct: 1 TFPTYKCPETFDAWYCL--------NDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
Score = 26.0 bits (57), Expect = 8.8
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 448 NCQYSQCKNYCVN-GEC----SITDSGPKCMCSPGYSGKKCDT 485
C + YC+N C C C+ G+ G++C+
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 42.1 bits (99), Expect = 5e-04
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 19/166 (11%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMV-STLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
P G + G +Y +A SN++ + T T + G + P +A+ P G+
Sbjct: 34 PMGAVISPDGTKVYVANAH---SNDVSIIDTATNNVIAT-VPAGSS-PQGVAVSP-DGKQ 87
Query: 87 FWTELGIKPRISGASIDGKNKFNLVDNNI---QWPTGITIDYPSQRLYWADPKARTIESI 143
+ +S ID + N V + + P G+ + ++LY + +T+ I
Sbjct: 88 VYVTNMASSTLS--VIDTTS--NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143
Query: 144 NLNGKDRFVVYHTEDNGYKPYKLEVFEDN--LYFSTYRTNNILKIN 187
N V +T G P + V D +Y + + + +I I+
Sbjct: 144 NT---VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID 186
Score = 41.3 bits (97), Expect = 0.001
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87
P+G+AV G +Y + S +I V + P IA+ P + +
Sbjct: 160 PKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEAA-PSGIAVNPEGTKAY 215
Query: 88 WTELGIKP-RISGASIDGKNKFNLVDNNI---QWPTGITIDYPSQRLYWADPKARTIESI 143
T + +S ID N + I P GI + +++Y A T+ I
Sbjct: 216 VTNVDKYFNTVS--MIDTGT--NKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271
Query: 144 NLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN 182
+ + T G PY F ++ +
Sbjct: 272 DTATNT---ITATMAVGKNPYASGQFIGSIPVQPVYPSA 307
Score = 39.8 bits (93), Expect = 0.003
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 32/200 (16%)
Query: 2 ASISSGNVTRVKREMNLKT--VLSNL---HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVS 56
A+ S +V+ + + T V++ + P+GVAV GK +Y +S+ + V
Sbjct: 49 ANAHSNDVSII----DTATNNVIATVPAGSSPQGVAVSPDGKQVY---VTNMASSTLSVI 101
Query: 57 TLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISG--ASIDGKNKFNLVDNN 114
+ TG P +AL P +++ T G + I+ V N
Sbjct: 102 DTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG-----DKTVSVINTVT--KAVINT 153
Query: 115 I---QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED 171
+ + P GI + ++Y A+ + +I I+ V T P + V +
Sbjct: 154 VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPE 210
Query: 172 N--LYFSTYR--TNNILKIN 187
Y + N + I+
Sbjct: 211 GTKAYVTNVDKYFNTVSMID 230
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 42.0 bits (98), Expect = 6e-04
Identities = 27/218 (12%), Positives = 50/218 (22%), Gaps = 39/218 (17%)
Query: 3 SISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLY-WTDAGGRSSNNIMVSTLEGR 61
V+ TV S L R + ++ D N + T E
Sbjct: 165 DFEKEYVS---------TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN-NIQWPTG 120
K T P++G +++ ++ + L + W
Sbjct: 216 FKVITELTKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFH 274
Query: 121 ITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNG-----------------YKP 163
I Y I + + K + + G + P
Sbjct: 275 IQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAP 334
Query: 164 YKLEVF----------EDNLYFSTYRTNNILKINKFGN 191
+ E + YF + I + G
Sbjct: 335 RQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGR 372
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 37.1 bits (86), Expect = 6e-04
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 633 AHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
+C NGG C ++ C C GY+G RCQT
Sbjct: 11 DGYCLNGGVC----MHIESLDSYTCNCVIGYSGDRCQT 44
Score = 35.9 bits (83), Expect = 0.002
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
CLN G+C +Y C+C Y+G RC++R
Sbjct: 13 YCLNGGVCMH--IESLDSYTCNCVIGYSGDRCQTR 45
Score = 35.6 bits (82), Expect = 0.002
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 513 CLNGGTC--IPNSKNNVCKCPSQYTGRRCE 540
CLNGG C I + + C C Y+G RC+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 33.2 bits (76), Expect = 0.016
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 391 CHNGGTCIATTQ----TCVCPPGFTGDTCQ 416
C NGG C+ TC C G++GD CQ
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 32.9 bits (75), Expect = 0.021
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 553 NKCTPNYCSNNGTCVLIEG--KPSCKCLPPYSGKQCTERE 590
YC N G C+ IE +C C+ YSG +C R+
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46
Score = 30.6 bits (69), Expect = 0.19
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 415 CQQCLNLKCQNGGVC--VNKTTGLECDCPKFYYGKNCQYSQCKNY 457
C + C NGGVC + C+C Y G CQ + +
Sbjct: 6 CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDLRWW 50
Score = 27.1 bits (60), Expect = 2.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 592 SPSCHNYCDNAGLCSYSKQ-GKPVCTCVNGWSGITC 626
S YC N G+C + + C CV G+SG C
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 25.9 bits (57), Expect = 8.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 485 TCTCLNGDSGPKCMCSPGYSGKKCDT 510
C + C C GYSG +C T
Sbjct: 19 VCMHIESLDSYTCNCVIGYSGDRCQT 44
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 39.4 bits (92), Expect = 7e-04
Identities = 30/153 (19%), Positives = 42/153 (27%), Gaps = 35/153 (22%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTG---------------DTCQQCLNLKCQNGGVCVN 431
C C +C+ T C C PGF+ + C + C C N
Sbjct: 5 CARWCPQDSSCVNAT-ACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWN 63
Query: 432 KTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCM----CSPGYSGKKCDT-C 486
+C C Y + + +S C CS G CD+
Sbjct: 64 TEGSYDCVCSPGYEPVS-----------GAKTFKNESENTCQDVDECSSGQHQ--CDSST 110
Query: 487 TCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTC 519
C N C C PG+ + C
Sbjct: 111 VCFNTVGSYSCRCRPGWKPRH-GIPNNQKDTVC 142
Score = 27.9 bits (62), Expect = 7.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 227 PCHQSALCINLPSSHTCLCPD 247
C S +C N S++C C
Sbjct: 105 QCDSSTVCFNTVGSYSCRCRP 125
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 36.7 bits (86), Expect = 7e-04
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 382 CESRICENKCHNGGTCIATTQ--TCVCPPGFTGDTCQ 416
CES N C NGG+C C CP GF G C+
Sbjct: 6 CES----NPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 35.9 bits (84), Expect = 0.001
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
QC + C NGG C + EC CP + GKNC+
Sbjct: 5 QCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 33.6 bits (78), Expect = 0.008
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C++ CLNGG+C + + C CP + G+ CE
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 32.5 bits (75), Expect = 0.021
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE 383
PCLN G C D+ +Y+C C + G CE
Sbjct: 10 PCLNGGSCKDDIN----SYECWCPFGFEGKNCE 38
Score = 31.3 bits (72), Expect = 0.068
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
++C N C N G+C C C + GK C
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 29.0 bits (66), Expect = 0.40
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 636 CFNGGTCREQ--NYSLDPDLKPICICPRGYAGVRCQ 669
C NGG+C++ +Y C CP G+ G C+
Sbjct: 11 CLNGGSCKDDINSYE--------CWCPFGFEGKNCE 38
Score = 26.7 bits (60), Expect = 2.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPD 247
+ C+ PC C + +S+ C CP
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPF 30
Score = 25.9 bits (58), Expect = 5.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKCD 509
+C + + +C C G+ GK C+
Sbjct: 16 SCKDDINSYECWCPFGFEGKNCE 38
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 41.1 bits (96), Expect = 0.001
Identities = 23/182 (12%), Positives = 47/182 (25%), Gaps = 27/182 (14%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTL----------LNTGLNEP 74
G+A + R + + +++ K T+ +
Sbjct: 130 FKYMWGIAAVGNN-TVLAYQ---RDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRV 185
Query: 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD 134
Y I E + ++ + G + +D + LY+ D
Sbjct: 186 YSIGWEG-THTVYVYMKASGWAPTRIGQLGSTFSG-------KIGAVALDETEEWLYFVD 237
Query: 135 PKARTIESINLNGKDRFVVYH----TEDNGYKPYKLEVFED-NLYFSTYRTNNILKINKF 189
+ + + PY + F D N Y S +++ KI
Sbjct: 238 SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297
Query: 190 GN 191
G
Sbjct: 298 GE 299
Score = 34.5 bits (79), Expect = 0.11
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGG----R--SSNNIMVSTLEGRKKR------TLLNTGLN 72
P G+ VD G N Y D R + VST+ G+ T L N
Sbjct: 322 FAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFN 380
Query: 73 EPYDIALEPLSGRMF 87
PYDI + G +
Sbjct: 381 YPYDICYDG-EGGYW 394
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 36.7 bits (85), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
+C + G C ++ K C C GY G RCQ
Sbjct: 12 GYCLHDGVC----MYIEALDKYACNCVVGYIGERCQ 43
Score = 35.6 bits (82), Expect = 0.003
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 513 CLNGGTC--IPNSKNNVCKCPSQYTGRRCE 540
CL+ G C I C C Y G RC+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 33.7 bits (77), Expect = 0.011
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 352 CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
CL+ G+C Y C+C Y G RC+ R
Sbjct: 14 CLHDGVCM--YIEALDKYACNCVVGYIGERCQYR 45
Score = 33.3 bits (76), Expect = 0.018
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 553 NKCTP---NYCSNNGTCVLIE--GKPSCKCLPPYSGKQCTERE 590
++C YC ++G C+ IE K +C C+ Y G++C R+
Sbjct: 4 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46
Score = 31.7 bits (72), Expect = 0.066
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 391 CHNGGTCI----ATTQTCVCPPGFTGDTCQ 416
C + G C+ C C G+ G+ CQ
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 27.9 bits (62), Expect = 1.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 423 CQNGGVC--VNKTTGLECDCPKFYYGKNCQYSQCKNY 457
C + GVC + C+C Y G+ CQY K +
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYRDLKWW 50
Score = 27.9 bits (62), Expect = 1.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 592 SPSCHNYCDNAGLCSYSKQ-GKPVCTCVNGWSGITCSER 629
S YC + G+C Y + K C CV G+ G C R
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45
Score = 26.7 bits (59), Expect = 4.3
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 317 NHGTCEFDDDFD-PHCICQENFYGTYCE 343
+ G C + + D C C + G C+
Sbjct: 16 HDGVCMYIEALDKYACNCVVGYIGERCQ 43
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 41.0 bits (95), Expect = 0.001
Identities = 35/255 (13%), Positives = 59/255 (23%), Gaps = 23/255 (9%)
Query: 330 HCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICEN 389
++N Y V+ S+ P+ CE N
Sbjct: 110 AIRIEKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKT-TIN 168
Query: 390 KCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNC 449
+N +CP C C C + C P +
Sbjct: 169 NEYNYRCWTTNRCQKMCPS--------TCGKRACTENNECCHPECLGSCSAPD----NDT 216
Query: 450 QYSQCKNYCVNGECSITDSGPKCMCSPGY---SGKKCDTCTCLNGDSGPKCMCSPGYSGK 506
C++Y G C C P G +C + S G+
Sbjct: 217 ACVACRHYYYAGVCVPA-------CPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIH 269
Query: 507 KCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTC 566
+ G S++ C + CE + S+ + C+
Sbjct: 270 DGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGN 329
Query: 567 VLIEGKPSCKCLPPY 581
+LI +
Sbjct: 330 LLINIRRGNNIASEL 344
Score = 36.3 bits (83), Expect = 0.033
Identities = 23/210 (10%), Positives = 45/210 (21%), Gaps = 31/210 (14%)
Query: 424 QNGGVCVNKTTGLE-------CDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSP 476
G + + K L ++ C + + P C +
Sbjct: 107 TRGAIRIEKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTT 166
Query: 477 GYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVC-------- 528
+ T C + + C G+C + C
Sbjct: 167 INNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYY 226
Query: 529 ------KCPSQY---TGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLP 579
CP G RC + S + + + ++G C+ +C
Sbjct: 227 AGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECM-------QECPS 279
Query: 580 PYSGKQCTEREDSPSCHNYCDNAGLCSYSK 609
+ P +K
Sbjct: 280 GFIRNGSQSMYCIPCEGPCPKVCEEEKKTK 309
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 36.4 bits (84), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 352 CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
CLN C+ P Y C CA + G RCE +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
Score = 34.1 bits (78), Expect = 0.009
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 499 CSPGYSGKKCDTCTCLNGGTC----IPNSKNNVCKCPSQYTGRRCE 540
C + D CLN C I + C+C + G+RCE
Sbjct: 7 CPETF-----DAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 32.6 bits (74), Expect = 0.030
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 381 RCESRICENKCHNGGTCIATTQT------CVCPPGFTGDTCQ 416
+C C N C A C C GF G C+
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 32.6 bits (74), Expect = 0.034
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 635 FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
+C N C + C C G+ G RC+
Sbjct: 15 YCLNDAHC--FAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 29.1 bits (65), Expect = 0.53
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 558 NYCSNNGTCVLIE----GKPSCKCLPPYSGKQCTERE 590
YC N+ C ++ SC+C + G++C +E
Sbjct: 14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
Score = 26.0 bits (57), Expect = 6.3
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 448 NCQYSQCKNYCVN-GEC----SITDSGPKCMCSPGYSGKKCDT 485
C + YC+N C C C+ G+ G++C+
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 40.4 bits (93), Expect = 0.002
Identities = 37/391 (9%), Positives = 78/391 (19%), Gaps = 2/391 (0%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCL-CPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNL 279
+ D + A + P C C + VT + P +
Sbjct: 200 PYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKY 259
Query: 280 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYG 339
C+ ++ +S +C + D
Sbjct: 260 TYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLM 319
Query: 340 TYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIA 399
+ ++++ +N +L + E +
Sbjct: 320 SAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLN 379
Query: 400 TTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCV 459
F+ + + + G+ + +F K
Sbjct: 380 IQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDN 439
Query: 460 NGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTC 519
+ C + S + +C+ S C +C
Sbjct: 440 SNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSC 499
Query: 520 IPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLP 579
S+ +C D+ C +C TC KC
Sbjct: 500 RRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKM-EDGLLTCHGPGPDNCTKCSH 558
Query: 580 PYSGKQCTEREDSPSCHNYCDNAGLCSYSKQ 610
G C E+ ++
Sbjct: 559 FKDGPNCVEKCPDGLQGANSFIFKYADPDRE 589
Score = 39.3 bits (90), Expect = 0.005
Identities = 29/275 (10%), Positives = 49/275 (17%), Gaps = 10/275 (3%)
Query: 385 RICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFY 444
+ +NK I P + C +
Sbjct: 124 YVDQNKFLCYADTIHWQDIVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQT 183
Query: 445 YGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYS 504
+ QC C S G C C N C +
Sbjct: 184 LTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFV 243
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG 564
N V KCP + C C +
Sbjct: 244 YNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSC----------VRACPSSKMEVEE 293
Query: 565 TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGI 624
+ + + C G + + + + + G +
Sbjct: 294 NGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDP 353
Query: 625 TCSERVSCAHFCFNGGTCREQNYSLDPDLKPICIC 659
+ T RE L+ P +
Sbjct: 354 YNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMT 388
Score = 33.5 bits (75), Expect = 0.27
Identities = 30/290 (10%), Positives = 54/290 (18%), Gaps = 11/290 (3%)
Query: 339 GTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCI 398
+ N Y + + S C S E + + C
Sbjct: 241 TFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCK 300
Query: 399 ATTQTC-VCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNY 457
T C G + + N +N T Y+ +
Sbjct: 301 PCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAI 360
Query: 458 CVNGECS------ITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTC 511
IT P + + G S ++ T
Sbjct: 361 DPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITS 420
Query: 512 TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCAS----LANKCTPNYCSNNGTCV 567
I + + ++ N+ N + C
Sbjct: 421 LQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCN 480
Query: 568 LIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
+ C P C C C+ + +C
Sbjct: 481 HLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVE 530
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 40.4 bits (94), Expect = 0.002
Identities = 42/325 (12%), Positives = 68/325 (20%), Gaps = 63/325 (19%)
Query: 368 TYKCHCAPSYTGARCESRICENKCHNGGT------CIATTQTCVCPPGFTGDTCQQCLNL 421
Y + + +G C++ ++ +G C P C
Sbjct: 173 NYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRELRPWC--FTTD 230
Query: 422 KCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKC--------- 472
+ +C C P G Q + G ++T SG C
Sbjct: 231 PNKRWELCDIP----RCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPH 286
Query: 473 ---MCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCK 529
+ K D C N D C S + + C K C
Sbjct: 287 THNRTPENFPCKNLDENYCRNPDGKRAPWCHTTNSQVRWEYC------------KIPSCD 334
Query: 530 CPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPS---CKCLPPYSGKQC 586
T + A G +GK+C
Sbjct: 335 SSPVSTEQLAPTAP---------------PELTPVVQDCYHGDGQSYRGTSSTTTTGKKC 379
Query: 587 -TEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQ 645
+ +P H + C + G C C +
Sbjct: 380 QSWSSMTPHRHQKTPENYPNAGLTMN--YCRNPDADKGPWC----FTTDPSVRWEYCNLK 433
Query: 646 NYSLDPDLKPICICPRGYAGVRCQT 670
S + P +T
Sbjct: 434 KCSGTEA--SVVAPPPVVLLPDVET 456
Score = 35.0 bits (80), Expect = 0.097
Identities = 55/338 (16%), Positives = 85/338 (25%), Gaps = 65/338 (19%)
Query: 387 CENKC--HNGGTCIAT-----TQTCVCPPGFTGDTCQQCL---NLKCQNGGVC------- 429
C KC TC A Q CV + + L + +
Sbjct: 30 CAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSSIIIRMRDVVLFEKKVYLSECKTGNG 89
Query: 430 ------VNKT-TGLEC--------DCPKFYYGKNCQYSQCKNYCVNGE-------CSITD 467
++KT G+ C P+F + +NYC N + C TD
Sbjct: 90 KNYRGTMSKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQGPWCYTTD 149
Query: 468 SGPKCMCSPGYSGKKCDTCTCLNGD-SGPKCMCSPGYSGKKC----DTCTCLNGGT--CI 520
+ Y C++ S SG +C +G
Sbjct: 150 PEKRY----DYCDILECEEECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKF 205
Query: 521 PNS--KNNVCKCPSQYTGRRCECAVGDT---SCASLANKCTPNYCSNNGTCVLIEGK-PS 574
PN K N C+ P + C + C P C+ G+
Sbjct: 206 PNKNLKKNYCRNPDRELRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYR 265
Query: 575 CKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITC------SE 628
SG C + + + H + + C +G C
Sbjct: 266 GNVAVTVSGHTC-QHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWCHTTNSQVR 324
Query: 629 RVSCAHF-CFNGGTCREQNYSLDPDLKPICICPRGYAG 665
C C + EQ P + + Y G
Sbjct: 325 WEYCKIPSCDSSPVSTEQLAPTAPP-ELTPVVQDCYHG 361
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 36.6 bits (84), Expect = 0.003
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 553 NKCTPNYCSNNGTCVLIE-GKPSCKCLPPYS--GKQCTEREDSPSCHNY--CDNAGLCSY 607
++C N C G +CL + +C + C C
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKM 64
Query: 608 SKQGKPVCTCVNGWS-----GITCSER 629
+ + + VC C S G+ CS
Sbjct: 65 NDKNEIVCKCTKEGSEPLFEGVFCSHH 91
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 39.5 bits (91), Expect = 0.004
Identities = 39/228 (17%), Positives = 60/228 (26%), Gaps = 16/228 (7%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECD--CPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMC 474
+ ++ + +NK EC CP GK + N C T S + +C
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERC-WTHSHCQKVC 192
Query: 475 SPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLN-GGTCIPNSKNNVCKCPSQ 533
C T L S CS KC C G C+
Sbjct: 193 PTICKSHGC-TAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDW 251
Query: 534 YTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSP 593
C C + + Y +N C+ +C Y+ +P
Sbjct: 252 RCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIP-------ECPSGYTMNSSN-LLCTP 303
Query: 594 SCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGT 641
C C C + K + + + C+ GG
Sbjct: 304 -CLGPCPKV--CHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGN 348
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 39.1 bits (90), Expect = 0.004
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 15/202 (7%)
Query: 433 TTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCD-TCTCLNG 491
++ + + +C C NG C + ++C C +
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSP 204
Query: 492 DSGPKCMCSPGYSGKKCDTCT----CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTS 547
C+ G +G + C + TC + P+ Y +
Sbjct: 205 SDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGK-YSF 263
Query: 548 CASLANKCTPNY-CSNNGTCVL--------IEGKPSCKCLPPYSGKQCTEREDSPSCHNY 598
A+ KC NY +++G+CV +E KC +
Sbjct: 264 GATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKD 323
Query: 599 CDNAGLCSYSKQGKPVCTCVNG 620
+ + +
Sbjct: 324 SLSINATNIKHFKNCTSISGDL 345
Score = 38.0 bits (87), Expect = 0.009
Identities = 29/209 (13%), Positives = 43/209 (20%), Gaps = 18/209 (8%)
Query: 411 TGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGP 470
+ C C + C C + S
Sbjct: 148 FLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC 207
Query: 471 KCM-CSPGYSGKKCDTCT-CLNGDSGPKCM--CSPGYSGKKCDTCTCLNGGTCIPNSKNN 526
C+ G +G + C C C C P +N
Sbjct: 208 CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATC 267
Query: 527 VCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
V KCP Y + C C + + +G CK K C
Sbjct: 268 VKKCPRNYV-------------VTDHGSCVRA-CGADSYEMEEDGVRKCKKCEGPCRKVC 313
Query: 587 TEREDSPSCHNYCDNAGLCSYSKQGKPVC 615
+ NA + K +
Sbjct: 314 NGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 33.0 bits (74), Expect = 0.37
Identities = 26/223 (11%), Positives = 46/223 (20%), Gaps = 21/223 (9%)
Query: 438 CDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKC 497
+ P ++ Q+ + S+ C C +C
Sbjct: 127 SNNPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQK--CDPSCPNGSCWGAGEENCQ 184
Query: 498 MCSPGYSGKKCD-TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCT 556
+ ++C C + C N C P + C + +C C
Sbjct: 185 KLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKD---TCP 241
Query: 557 PNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCT 616
P N T + K+C P + D+ G V
Sbjct: 242 PLMLYNPTTYQMDVNPEGKYSFGATCVKKC------PRNYVVTDH---------GSCVRA 286
Query: 617 CVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICIC 659
C + C +
Sbjct: 287 CGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINA 329
Score = 33.0 bits (74), Expect = 0.40
Identities = 29/204 (14%), Positives = 47/204 (23%), Gaps = 9/204 (4%)
Query: 312 CYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKC 371
C G E + IC + G + C NQ C T P +
Sbjct: 170 CPNGSCWGAGEENCQKLTKIICAQQCSGRCRG--KSPSDCCHNQ--CAAGCTGPRESDCL 225
Query: 372 HCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVN 431
C A C+ C TT P C+ +N V +
Sbjct: 226 VCRKFRDEATCKD-----TCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDH 280
Query: 432 KTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNG 491
+ C + ++ K + + S +
Sbjct: 281 GSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTS 340
Query: 492 DSGPKCMCSPGYSGKKCDTCTCLN 515
SG + + G L+
Sbjct: 341 ISGDLHILPVAFRGDSFTHTPPLD 364
Score = 31.1 bits (69), Expect = 1.3
Identities = 34/228 (14%), Positives = 49/228 (21%), Gaps = 33/228 (14%)
Query: 332 ICQENFYGTYCEKVNNSMCPCLN------QGMCY-PDLTHPEPTYKCHCAPSYTGARCES 384
I +F N + C G C+ + + K CA +G RC
Sbjct: 143 IVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSG-RCRG 201
Query: 385 RICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLN-LKCQNGGVCVNKTTGLECDCPKF 443
+ + CHN C G TG CL K ++ C + CP
Sbjct: 202 KSPSDCCHN-----------QCAAGCTGPRESDCLVCRKFRDEATCKDT-------CPPL 243
Query: 444 YYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGY 503
Y N + P +
Sbjct: 244 MLYNPTTYQMDVNPE----GKYSFGATCVKKCPRNYVVTDHGSCVRACGAD--SYEMEED 297
Query: 504 SGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASL 551
+KC C C S + L
Sbjct: 298 GVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDL 345
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 39.2 bits (90), Expect = 0.005
Identities = 24/140 (17%), Positives = 43/140 (30%)
Query: 528 CKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587
P+++ G C + D + S + C G+ + L + C
Sbjct: 33 LLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCL 92
Query: 588 EREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNY 647
+ D C + CS + G++ +T + S + GG C
Sbjct: 93 DGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYN 152
Query: 648 SLDPDLKPICICPRGYAGVR 667
+L+ C R Y G
Sbjct: 153 GEWRELRYDSTCERLYYGDD 172
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 39.3 bits (91), Expect = 0.005
Identities = 52/372 (13%), Positives = 82/372 (22%), Gaps = 45/372 (12%)
Query: 296 NVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQ 355
N + K C +G C C +
Sbjct: 256 NGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGWIPAPRCTLKPCDYPDIKHG 315
Query: 356 GMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVC------PPG 409
G+ + ++ P SY C+ C P
Sbjct: 316 GLYHENMRRPYFPVAVGKYYSYY--------CDEHFETPSGSYWDHIHCTQDGWSPAVPC 367
Query: 410 FTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSG 469
N QN G + ++ C Y Q + C+ S T
Sbjct: 368 LRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVT---CMENGWSPT--- 421
Query: 470 PKCMCSPGYSGKKCD------TCTCLNGDSGPKCM--CSPGY---SGKKCDTCTCLNGGT 518
P+C+ S D + + K C GY G+ + C G
Sbjct: 422 PRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGKDGW 481
Query: 519 CIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG--TCVLIEGKPSCK 576
+ C P R +L +C Y SN G T ++ G
Sbjct: 482 SAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNGWS 541
Query: 577 CLPPYSGKQCTEREDSPSCHNYCDNAGLCS-----------YSKQGKPVCTCV-NGWSGI 624
LP ++C + ++ G C G S
Sbjct: 542 DLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPD 601
Query: 625 TCSERVSCAHFC 636
+
Sbjct: 602 LPICKEQVQSCG 613
Score = 38.6 bits (89), Expect = 0.008
Identities = 51/410 (12%), Positives = 90/410 (21%), Gaps = 57/410 (13%)
Query: 269 TCYLDCNHG-NLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDF 327
+ +C+ + + C + K+ ++ L + +F
Sbjct: 696 SVEFNCSESFTMIGHRSITCIH--GVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEF 753
Query: 328 DPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRIC 387
D + C + G P++ + P
Sbjct: 754 DHNSNI-----RYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTT 808
Query: 388 EN---------KCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVN-KTTGLE 437
N C + C G + C +
Sbjct: 809 LNYRDGEKVSVLCQENYLIQ-EGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSR 867
Query: 438 CDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKC 497
+ +G Y+ C G+ + + TC G
Sbjct: 868 SSQESYAHGTKLSYT---------------------CEGGFRISEENETTCYMGKWSSPP 906
Query: 498 MCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTP 557
C C + ++ G S + Y C G KC
Sbjct: 907 QCEG----LPCKSPPEISHGVVAHMSDSYQYGEEVTYK-----CFEGFGIDGPAIAKCLG 957
Query: 558 NYCSNNGTCVLIEGKPSCKCLP-PYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCT 616
S+ +C+ C LP + E++D Y G T
Sbjct: 958 EKWSHPPSCIKT----DCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVT 1013
Query: 617 CVNG-WSGITCSERVSCAHFCF--NGGTCREQNYSLDPDLKPICICPRGY 663
C+N W+G SC + N Q + C Y
Sbjct: 1014 CINSRWTGRPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPY 1063
Score = 34.7 bits (79), Expect = 0.12
Identities = 47/423 (11%), Positives = 94/423 (22%), Gaps = 35/423 (8%)
Query: 268 RTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDF 327
TC + C + N + A C G D +
Sbjct: 411 VTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGET 470
Query: 328 DPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCH--CAPSYTGARCESR 385
C ++ + + + P D T + C Y +
Sbjct: 471 SGSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTT 530
Query: 386 ICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY 445
+NG + + C + ++L L+ C +
Sbjct: 531 GSIVCGYNGWSDLPICYERECEL------PKIDVHLVPDRKKDQYKVGEVLKFSCKPGFT 584
Query: 446 GKNCQYSQCKNYCVNGECSITDSGPKCMCSPG---YSGKKCDTCTCLNGDSGPKCMCSPG 502
QC ++ ++ + I + P K T + C+P
Sbjct: 585 IVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPR 644
Query: 503 YSGKKCDTCTCLNGG--------------TCIPNSKNNVCKCPSQYTGR----RCECAVG 544
+ K + C++G IP ++ + S C+
Sbjct: 645 FLMKGPNKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSES 704
Query: 545 DTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGL 604
T + C + CV I+ CK ++ + + + +
Sbjct: 705 FTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHN--SNIRYR 762
Query: 605 CSYSKQGKPVCTCVNGWSGITCSERVSCAHFC----FNGGTCREQNYSLDPDLKPICICP 660
C + W + K +C
Sbjct: 763 CRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQ 822
Query: 661 RGY 663
Y
Sbjct: 823 ENY 825
Score = 34.3 bits (78), Expect = 0.17
Identities = 49/326 (15%), Positives = 83/326 (25%), Gaps = 44/326 (13%)
Query: 386 ICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVN--KTTGLECDCPKF 443
C+ G + C + C +KC N + ++
Sbjct: 91 KAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREY 150
Query: 444 YYGKNCQYSQCKNYCVNGECSIT------DSGPKCMCSPGYSGKKCDTCTCLNGDSGP-- 495
++G+ ++ Y + G+ + S K C C + +NG
Sbjct: 151 HFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVE----ISCKSPDVINGSPISQK 206
Query: 496 ---------KCMCSPGYSGKKCDTCTCLNGG-----TCIPNSKNNVCKCPSQYTGRRCEC 541
+ C+ GY + C G +C S +N Y+ R +
Sbjct: 207 IIYKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSCDNPYIPNGDYSPLRIKH 266
Query: 542 AVGDT---SCAS---LANKCTPNYCSNNGTCVLIEGKPSCKCLPP---------YSGKQC 586
GD C + A + C++ G P +
Sbjct: 267 RTGDEITYQCRNGFYPATRGNTAKCTSTGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPY 326
Query: 587 TEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQN 646
YCD + +GWS R + N G +
Sbjct: 327 FPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLEN-GYNQNHG 385
Query: 647 YSLDPDLKPICICPRGYAGVRCQTLV 672
C GYA + QT V
Sbjct: 386 RKFVQGKSIDVACHPGYALPKAQTTV 411
Score = 32.0 bits (72), Expect = 0.96
Identities = 58/427 (13%), Positives = 107/427 (25%), Gaps = 64/427 (14%)
Query: 266 PARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDD 325
+ + C + TC+ + +N + T +C+ G E +
Sbjct: 468 GETSGSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDG-YESNT 526
Query: 326 DFDPHCICQENFYGTY---CEKVNNSMCPCLNQGMCYPDLTHPEP--TYKCHCAPSYTGA 380
I + C + + + + K C P +T
Sbjct: 527 GSTTGSIVCGYNGWSDLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIV 586
Query: 381 RCESRICENKCHNGG--TCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLEC 438
S C + + C Q+C PP ++ + + V E
Sbjct: 587 GPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVV-------EY 639
Query: 439 DCPKFYYGKNCQYSQCKN--------------------YCVNGECSITDSGPK------C 472
C + K QC + +G ++
Sbjct: 640 YCNPRFLMKGPNKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEF 699
Query: 473 MCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPS 532
CS ++ + TC++G C KKC + + + N K
Sbjct: 700 NCSESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNI 759
Query: 533 QYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDS 592
+Y R E + C C + + + + T +
Sbjct: 760 RYRCRGKEGWIHTV--------CINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNY 811
Query: 593 P---SCHNYCDNAGLCSYSKQGKPVCTCVNG-WSG-------ITCSERVSCAHFCFNGGT 641
C Y Q TC +G W I CS+ H N
Sbjct: 812 RDGEKVSVLCQEN----YLIQEGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSR 867
Query: 642 CREQNYS 648
+++Y+
Sbjct: 868 SSQESYA 874
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 37.8 bits (87), Expect = 0.011
Identities = 53/322 (16%), Positives = 78/322 (24%), Gaps = 56/322 (17%)
Query: 338 YGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTC 397
Y + +N+ CL + + +C TG C+ G C
Sbjct: 187 IEEYHDFLNSGGGACL-----FNKPSKLLDPPECGNGFIETGEECDCGTPAECVLEGAEC 241
Query: 398 IATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ------- 450
G C++C G VC + +CD + G + Q
Sbjct: 242 CKKCTLTQDSQCSDGLCCKKCKFQP--MGTVC--REAVNDCDIRETCSGNSSQCAPNIHK 297
Query: 451 --YSQCKN---YCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCS----- 500
C C G C D K + + LN + K C
Sbjct: 298 MDGYSCDGVQGICFGGRCKTRDRQCKYIWGQKVTASDKYCYEKLNIEGTEKGNCGKDKDT 357
Query: 501 ---PGYSGKKCDTCTCLNGGT--CIPNSKNNVCKCPSQYTGRRCECAVGDTSCAS----- 550
C C N G + + GR C+ G
Sbjct: 358 WIQCNKRDVLCGYLLCTNIGNIPRLGELDGEITSTLVVQQGRTLNCSGGHVKLEEDVDLG 417
Query: 551 ---LANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSY 607
C P C+ + CL G C+ G+CS
Sbjct: 418 YVEDGTPCGPQMMCLEHRCLPVASFNFSTCLSSKEGTICSGN-------------GVCSN 464
Query: 608 SKQGKPVCTCVNGWSGITCSER 629
+ C C W G C+
Sbjct: 465 ELK----CVCNRHWIGSDCNTY 482
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 37.5 bits (87), Expect = 0.012
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 3 SISSGNVTRVKRE--MNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG 60
+I+ G R+ E N +S G + + GG+ I L
Sbjct: 297 NINGGAPQRITWEGSQNQDADVS----SDG------KFMVMVSSNGGQQH--IAKQDLAT 344
Query: 61 RKKRTLLNTGLNEPYDIALEPLSGRM--FWTELGIKPRISGASIDGKNKFNLVDNN 114
+ L +T L+E +A P +G M + + G+ ++ S DG+ K L +
Sbjct: 345 GGVQVLSSTFLDETPSLA--P-NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATD 397
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 37.3 bits (85), Expect = 0.013
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 14/90 (15%)
Query: 384 SRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKF 443
S C + C G CI+ C C G+T N + +
Sbjct: 191 SEPCPSYCSGHGDCISGV--CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKL-------- 240
Query: 444 YYGKNCQYSQCKNYCVNGECSITDSGPKCM 473
+ + + V C + G
Sbjct: 241 ----SPLWYKITGGQVGTGCGTLNDGRSLY 266
Score = 35.0 bits (79), Expect = 0.079
Identities = 27/155 (17%), Positives = 42/155 (27%), Gaps = 13/155 (8%)
Query: 519 CIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCL 578
C P S C+ S+ GD + P +++ T + S +
Sbjct: 120 CFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKN 179
Query: 579 PPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFN 638
P G C +YC G C VC C G++ + + +
Sbjct: 180 VPPFGLDGVYIS--EPCPSYCSGHGDCISG-----VCFCDLGYTAAQGTCVSNTPNHSEM 232
Query: 639 GGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVH 673
+ L G G C TL
Sbjct: 233 FDRFEGKLSPL------WYKITGGQVGTGCGTLND 261
Score = 33.5 bits (75), Expect = 0.24
Identities = 22/163 (13%), Positives = 40/163 (24%), Gaps = 10/163 (6%)
Query: 395 GTCIATTQTCVCPPGFTGDTCQQCLNL----KCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
G ++ V G + + + + + + + + P F
Sbjct: 131 GNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGVYI 190
Query: 451 YSQCKNYCV-NGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCD 509
C +YC +G+C C C GY+ + + S S
Sbjct: 191 SEPCPSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYK 246
Query: 510 TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLA 552
G C + + R DT L
Sbjct: 247 ITGGQVGTGCGTLNDGRSL-YFNGLGKREARTVPLDTRNIRLV 288
Score = 31.9 bits (71), Expect = 0.74
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 485 TCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVG 544
+ + P Y + C + C G CI + VC C YT + C
Sbjct: 171 IQESSSQKNVPPFGLDGVYISEPCPS-YCSGHGDCI----SGVCFCDLGYTAAQGTCVSN 225
Query: 545 DTSCASLANKCTPNYCSNNGTCVLIEGKPSC 575
+ + + ++ + C
Sbjct: 226 TPNHSEMFDRFEGKLSPLWYKITGGQVGTGC 256
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 37.7 bits (87), Expect = 0.014
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 418 CLNLKCQNGGVCVNKTTGL---ECDC-PKFYYGKNCQYS 452
C CQ+ G+CV GL +CDC Y G NC
Sbjct: 5 CCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTIP 41
Score = 31.2 bits (70), Expect = 1.2
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 347 NSMC--PCLNQGMCYPDLTHPEPTYKCHCAPS-YTGARCESR 385
N C PC +QG+C + Y+C C + Y+G C
Sbjct: 3 NPCCYYPCQHQGIC---VRFGLDRYQCDCTRTGYSGPNCTIP 41
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 37.8 bits (87), Expect = 0.014
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 418 CLNLKCQNGGVCVNKTTGL---ECDC-PKFYYGKNCQYS 452
C + CQN G C+ +TG +CDC +YG+NC
Sbjct: 4 CCSNPCQNRGECM--STGFDQYKCDCTRTGFYGENCTTP 40
Score = 31.6 bits (71), Expect = 1.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 347 NSMC--PCLNQGMCYPDLTHPEPTYKCHCAPS-YTGARCESR 385
N C PC N+G C ++ YKC C + + G C +
Sbjct: 2 NPCCSNPCQNRGEC---MSTGFDQYKCDCTRTGFYGENCTTP 40
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 37.0 bits (85), Expect = 0.016
Identities = 10/62 (16%), Positives = 15/62 (24%), Gaps = 2/62 (3%)
Query: 482 KCDTC-TCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
+C C + +G C C Y+G C + S E
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTG-NGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFE 72
Query: 541 CA 542
Sbjct: 73 NT 74
Score = 32.0 bits (72), Expect = 0.63
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 11/70 (15%)
Query: 459 VNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGT 518
V+ EC +G C C Y+G C G G +
Sbjct: 17 VHAECRDYATGFCCRCVANYTG-NGRQCVA-----EGSPQRVNG-----KVKGRIFVGSS 65
Query: 519 CIPNSKNNVC 528
+P N
Sbjct: 66 QVPVVFENTD 75
Score = 30.1 bits (67), Expect = 2.1
Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 228 CHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLC 287
C A C + + C C + T + S + G+
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNG-KVKGRIFVGSSQVPVVFEN 73
Query: 288 PD 289
D
Sbjct: 74 TD 75
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 36.6 bits (84), Expect = 0.021
Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 39/217 (17%)
Query: 11 RVKREMNLKTVLSNLHD------PRGVAVDWVGKNLYWTDAGGR-SSNNIMVSTLE---- 59
V E T L+ D V VD +Y+TD +
Sbjct: 105 VVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164
Query: 60 GR--------KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNL- 110
GR K+ TLL L+ P + S + E +I ++G K
Sbjct: 165 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL-SHQIVKYWLEGPKKGTAE 223
Query: 111 VDNNIQWPTGITID--------YPSQRLYWADPKAR-TIESINLNGKDRFVVYHTEDNGY 161
V I P I + + + + G ++
Sbjct: 224 VLVKIPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN---ILEVIPLPPP 280
Query: 162 KPYKL--EVFEDN--LYFSTYRTNNI--LKINKFGNS 192
+ ++ E + LY T ++ L +K GNS
Sbjct: 281 FAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKKGNS 317
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 33.2 bits (75), Expect = 0.022
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 508 CDTCTCLNGGTC-----IPNSKNNVCKCPSQYTGRRCE 540
+ C+NGG C + N +CKC +TG RC
Sbjct: 9 KEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 33.2 bits (75), Expect = 0.026
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPS-----CKCLPPYSGKQCTER 589
+ +C N G C +++ + CKC P ++G +CTE
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48
Score = 33.2 bits (75), Expect = 0.027
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 635 FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672
FC NGG C L + +C C G+ G RC V
Sbjct: 13 FCVNGGECFMVK-DLSNPSRYLCKCQPGFTGARCTENV 49
Score = 31.6 bits (71), Expect = 0.097
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 351 PCLNQGMCYPDLTHPEPT-YKCHCAPSYTGARCESRI 386
C+N G C+ P+ Y C C P +TGARC +
Sbjct: 13 FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
Score = 29.3 bits (65), Expect = 0.55
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 391 CHNGGTCI-------ATTQTCVCPPGFTGDTCQQ 417
C NGG C + C C PGFTG C +
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47
Score = 25.9 bits (56), Expect = 9.5
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 415 CQQCLNLKCQNGGVC-----VNKTTGLECDCPKFYYGKNCQ 450
C + C NGG C ++ + C C + G C
Sbjct: 6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 34.8 bits (80), Expect = 0.038
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 342 CEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENK 390
C + C G C + + Y C+C Y G +C+ + +
Sbjct: 117 CYTASCQPWSCSGHGECVEIINN----YTCNCDVGYYGPQCQFVQVDPR 161
Score = 32.9 bits (75), Expect = 0.16
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQC 454
C C G CV C+C YYG CQ+ Q
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQV 158
Score = 32.1 bits (73), Expect = 0.33
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C +C G C+ N C C Y G +C+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 30.9 bits (70), Expect = 0.67
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSP 593
C P CS +G CV I +C C Y G QC + P
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQVDP 160
Score = 29.4 bits (66), Expect = 2.4
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 382 CESRIC-ENKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ 417
C + C C G C+ TC C G+ G CQ
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 34.4 bits (79), Expect = 0.048
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 382 CE-SRICENKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ 417
C + C G C+ T TC C PGF+G C+Q
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 34.4 bits (79), Expect = 0.053
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 342 CEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE 383
C + C G C + + Y C C P ++G +CE
Sbjct: 117 CYTAACTNTSCSGHGECVETINN----YTCKCDPGFSGLKCE 154
Score = 32.8 bits (75), Expect = 0.16
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAV 543
C +C G C+ N CKC ++G +CE V
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
Score = 32.0 bits (73), Expect = 0.32
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 415 CQ--QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY 451
C C N C G CV C C + G C+
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 30.9 bits (70), Expect = 0.75
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 554 KCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
CT CS +G CV +CKC P +SG +C
Sbjct: 121 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 27.8 bits (62), Expect = 8.3
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 438 CDCPKFYYGKNCQYSQCKN-YCVN-GECSITDSGPKCMCSPGYSGKKCD 484
C K C + C N C GEC T + C C PG+SG KC+
Sbjct: 109 CSKKKLAL---CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 27.4 bits (61), Expect = 9.8
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 13/60 (21%)
Query: 615 CTCVNGWSGITCSERVSCAHFCFNGGTCRE--QNYSLDPDLKPICICPRGYAGVRCQTLV 672
C+ C C G C E NY+ C C G++G++C+ +V
Sbjct: 109 CSKKKLA---LCYTAACTNTSCSGHGECVETINNYT--------CKCDPGFSGLKCEQIV 157
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 35.7 bits (81), Expect = 0.055
Identities = 28/144 (19%), Positives = 42/144 (29%), Gaps = 18/144 (12%)
Query: 370 KCHCAPSYTGARCESR----ICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQN 425
+ A S ARC SR C C + C+
Sbjct: 14 ESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEP----CKE 69
Query: 426 GGVCVNKTTGLECDC--PKFYYG--KNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGK 481
G C+ PK Y +C++ + G+C P + G++
Sbjct: 70 SGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDC------PAPEKASGFAAA 123
Query: 482 KCDTCTCLNGDSGPKCMCSPGYSG 505
++C N SG K CS G
Sbjct: 124 CVESCEVDNECSGVKKCCSNGCGH 147
Score = 35.7 bits (81), Expect = 0.058
Identities = 21/175 (12%), Positives = 37/175 (21%), Gaps = 27/175 (15%)
Query: 394 GGTCIATTQTCVCPPGFTGDTCQ-QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYS 452
G + C +CL+L+ ++ N
Sbjct: 5 GAAAARRLDESLSAGSVQRARCASRCLSLQIT------------RISAFFQHFQNNGSLV 52
Query: 453 QCKNYCVNGECSITDSGPKCMCSPGYSGKKCD-TCTCLNGDSGPKCMCSPGYSGKKCDTC 511
C+N + +CS C S +C C L +C+ S +
Sbjct: 53 WCQN---HKQCS--KCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVK 107
Query: 512 TCLNGGTCIPNSKNNVC--------KCPSQYTGRRCECAVGDTSCASLANKCTPN 558
+ C +C C +L
Sbjct: 108 QGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLK 162
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 35.8 bits (81), Expect = 0.057
Identities = 26/208 (12%), Positives = 42/208 (20%), Gaps = 2/208 (0%)
Query: 370 KCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVC 429
C N T + C G G C
Sbjct: 160 APERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKP-RECCHLFCAGGC 218
Query: 430 VNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCL 489
T C F+ C+ N + ++ P+ + G + K L
Sbjct: 219 TGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVLETNPEGKYAYGATCVKECPGHLL 278
Query: 490 NGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCA 549
+ C K C NG V + + R C G+
Sbjct: 279 RDNGACVRSCPQDKMDKGG-ECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRIL 337
Query: 550 SLANKCTPNYCSNNGTCVLIEGKPSCKC 577
+ +N +
Sbjct: 338 DQTFSGFQDVYANYTMGPRYIPLDPERL 365
Score = 31.9 bits (71), Expect = 0.88
Identities = 35/286 (12%), Positives = 53/286 (18%), Gaps = 21/286 (7%)
Query: 323 FDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARC 382
+ D + C K + S + T CA
Sbjct: 146 VSNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPK 205
Query: 383 ESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLK------------CQNGGVCV 430
C C G T C F C++ G
Sbjct: 206 PRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVLETNPEGKYAY 265
Query: 431 NKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPG---------YSGK 481
T EC C S ++ G + +GP PG S +
Sbjct: 266 GATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFR 325
Query: 482 KCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCEC 541
C + + V +
Sbjct: 326 NCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHP 385
Query: 542 AVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587
+ S + L K S L + KQ +
Sbjct: 386 QFRNLSYFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQIS 431
Score = 31.1 bits (69), Expect = 1.5
Identities = 26/302 (8%), Positives = 55/302 (18%), Gaps = 15/302 (4%)
Query: 269 TCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFD 328
C +C + T + + K A TC +C +
Sbjct: 237 VCKEECPPMRKYNPTTYVLETN-----------PEGKYAYGATCVKECPGHLLRDNGACV 285
Query: 329 PHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE 388
C + G C N + +
Sbjct: 286 RSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRILDQTFSGFQ 345
Query: 389 NKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQN-GGVCVNKTTGLECDCPKFYYGK 447
+ N + L + N + +
Sbjct: 346 DVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFRNLSYFRNLETIHGRQLM 405
Query: 448 NCQYSQCKNYCVNGECSITDSGPKCMCSPGY---SGKKCDTCTCLNGDSGPKCMCSPGYS 504
++ + + + + C + +
Sbjct: 406 ESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVN 465
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG 564
NG C + C C+ + +C + + Y +N
Sbjct: 466 ENLRADLCEKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFNGTCIADCGYISNAYKFDNR 525
Query: 565 TC 566
TC
Sbjct: 526 TC 527
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 35.8 bits (81), Expect = 0.060
Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 8/105 (7%)
Query: 539 CECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNY 598
+ + CS +G CV + SC C + G C E E S
Sbjct: 520 FDKQQTWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQWGGLYCDEPETSLPTQLK 575
Query: 599 CDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCR 643
+ S T G C S F+GG R
Sbjct: 576 DNFNRAPSNQNW----LTVSGGKLSTVCGAVASGLALHFSGGCSR 616
Score = 35.4 bits (80), Expect = 0.066
Identities = 21/111 (18%), Positives = 29/111 (26%), Gaps = 8/111 (7%)
Query: 485 TCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVG 544
+ + Y G C C G C+ C C Q+ G C+
Sbjct: 515 HQPAPFDKQQTWAIDN-VYIGDGCLDM-CSGHGRCV----QGSCVCDEQWGGLYCDEP-- 566
Query: 545 DTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSC 595
+TS + SN + GK S C SG
Sbjct: 567 ETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRL 617
Score = 32.7 bits (73), Expect = 0.46
Identities = 20/172 (11%), Positives = 38/172 (22%), Gaps = 13/172 (7%)
Query: 378 TGARCESRICENKCHNGGTCIATTQTCVCPPGFTG-DTCQQCLNLKCQNGGVCVNKTTGL 436
G + + N Q + F L ++
Sbjct: 459 LGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPA 518
Query: 437 ECDCPKFYYGKNCQYSQ-CKNYCV-NGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSG 494
D + + N C + C +G C C+C + G CD
Sbjct: 519 PFDKQQTWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQWGGLYCDEPET-----S 569
Query: 495 PKCMCSPGYSGKKCDTCTC-LNGGTCIPNSKNNVCKCPSQYTGRRCECAVGD 545
++ + ++GG ++G V
Sbjct: 570 LPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTV 621
Score = 32.3 bits (72), Expect = 0.64
Identities = 14/116 (12%), Positives = 24/116 (20%), Gaps = 12/116 (10%)
Query: 328 DPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRIC 387
Q+ + + + C G C C C + G C+
Sbjct: 517 PAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQG--------SCVCDEQWGGLYCDEPET 568
Query: 388 ENKC---HNGGTCIATTQTCVCPPGFTGDTCQQ-CLNLKCQNGGVCVNKTTGLECD 439
N + G C L G C ++ +
Sbjct: 569 SLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLN 624
Score = 31.9 bits (71), Expect = 0.77
Identities = 18/123 (14%), Positives = 31/123 (25%), Gaps = 14/123 (11%)
Query: 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQG 611
P+Y + T ++ C + C G C
Sbjct: 497 ITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYI---GDGCLDMCSGHGRCVQGS-- 551
Query: 612 KPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671
C C W G+ C E + + T + N++ P + G C +
Sbjct: 552 ---CVCDEQWGGLYCDEPET------SLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAV 602
Query: 672 VHY 674
Sbjct: 603 ASG 605
Score = 30.8 bits (68), Expect = 2.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLN 420
CE C+ G+CI T+ C+C PG++G TC+
Sbjct: 188 CEEMCYGHGSCINGTK-CICDPGYSGPTCKISTK 220
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 33.1 bits (76), Expect = 0.068
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 24/105 (22%)
Query: 460 NGECSITDSGPKCMCSPGYSGKKC---DTC---------TCLNGDSGPKCMCSPGYSGKK 507
+ S + + + C C + G +C+C G+
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVA 62
Query: 508 CDTCT----CLNGGTCIPNSKNNV----CKCPSQYT----GRRCE 540
C C + TC N C+C + + C+
Sbjct: 63 QRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 31.1 bits (71), Expect = 0.29
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 425 NGGVCVNKTTGLECDCPKFYYGKNCQYS---QCKNYCVNGECSITDSGPKCMCSPGY--- 478
+ + + + Y + + N + C+ G +C+C G+
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61
Query: 479 SGKKC---------DTC--TCLNGDSGPKCMCSPGY 503
+ ++C DTC C+N + G KC C G+
Sbjct: 62 AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 97
Score = 28.1 bits (63), Expect = 3.3
Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 18/89 (20%)
Query: 403 TCVCPPGFTGDTCQQCLNLKCQNGG---VCVNKTTGLECDCPKFYY---GKNCQ------ 450
NGG VC + G EC CP + + C+
Sbjct: 14 DIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 73
Query: 451 -YSQCKNYCVNGECSITDSGPKCMCSPGY 478
C CVN + G KC C G+
Sbjct: 74 DPDTCSQLCVN-----LEGGYKCQCEEGF 97
Score = 27.3 bits (61), Expect = 7.4
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 18/86 (20%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKC---DTCTCLNGG---TCIPNSKNNVCKCPSQYTGRRCE 540
+ S + + + C NGG C C CP +
Sbjct: 5 HHHHPMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQL---- 60
Query: 541 CAVGDTSCASLANKCTPNYCSNNGTC 566
V C + + C + TC
Sbjct: 61 --VAQRRCEDI------DECQDPDTC 78
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 35.4 bits (80), Expect = 0.068
Identities = 34/339 (10%), Positives = 62/339 (18%), Gaps = 15/339 (4%)
Query: 269 TCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSC-----KVAPARTCYLDCNHGTCEF 323
TC C L + T + + + + + V +C C + E
Sbjct: 235 TCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEM 294
Query: 324 DDDFDPHCI-CQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARC 382
++D C C+ L+ + R
Sbjct: 295 EEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRG 354
Query: 383 ESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPK 442
+S I T + + +L + T
Sbjct: 355 DSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSL 414
Query: 443 FYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPG 502
N ++ + + C T
Sbjct: 415 AVVSLNITSLGLRSLKEISDGD---------VIISGNKNLCYANTINWKKLFGTSGQKTK 465
Query: 503 YSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSN 562
+ + G C C P C C
Sbjct: 466 IISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREF 525
Query: 563 NGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDN 601
I+ P C ++ C +Y D
Sbjct: 526 VENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDG 564
Score = 29.2 bits (64), Expect = 5.4
Identities = 29/259 (11%), Positives = 56/259 (21%), Gaps = 6/259 (2%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYG 446
C++ C TT P C+ KC V + + + Y
Sbjct: 236 CKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVK-KCPRNYVVTDHGSCVRACGADSYEM 294
Query: 447 KNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGK 506
+ +CK G C +G +
Sbjct: 295 EEDGVRKCKKCE--GPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAF 352
Query: 507 KCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTC 566
+ D+ T K + + + A + +G
Sbjct: 353 RGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQF 412
Query: 567 VLIEGKPSCKCLPPYSGKQCTEREDSPSCH---NYCDNAGLCSYSKQGKPVCTCVNGWSG 623
L + L S K+ ++ + S + Y + ++
Sbjct: 413 SLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGE 472
Query: 624 ITCSERVSCAHFCFNGGTC 642
C H + C
Sbjct: 473 NKCKATGQVCHALCSPEGC 491
Score = 29.2 bits (64), Expect = 5.5
Identities = 32/276 (11%), Positives = 55/276 (19%), Gaps = 10/276 (3%)
Query: 323 FDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARC 382
DF + + C+K + S G + +
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKS 203
Query: 383 ESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPK 442
S C N+C G T + VC TC+ C + T ++ +
Sbjct: 204 PSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDT----CPPLMLYNPTTYQMDVNPE- 258
Query: 443 FYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC-TCLNGDSG-PKCMCS 500
GK + C C C + D C + K
Sbjct: 259 ---GKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNG 315
Query: 501 PGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYC 560
G K N + R +
Sbjct: 316 IGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVK 375
Query: 561 SNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH 596
G ++ + L + +
Sbjct: 376 EITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQ 411
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 34.9 bits (80), Expect = 0.093
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 552 ANKCTPNYCSNNGTCVLIEGKPSCKC-LPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQ 610
A C+ CS +G CV P L P S P + +
Sbjct: 336 ALLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAV 395
Query: 611 GKPVCTCVNGWSGITCSER 629
+ C C GW C +
Sbjct: 396 -EFKCRCYPGWQAPWCERK 413
Score = 30.3 bits (68), Expect = 2.1
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 7/75 (9%)
Query: 348 SMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCES-----RICENKCHNGGTCIATTQ 402
S C G C P P+ + + +A
Sbjct: 340 SQALCSGHGRCVRR--TSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEF 397
Query: 403 TCVCPPGFTGDTCQQ 417
C C PG+ C++
Sbjct: 398 KCRCYPGWQAPWCER 412
Score = 29.9 bits (67), Expect = 2.9
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 295 LNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLN 354
LNVTSG + C C HG C P + N + L
Sbjct: 330 LNVTSGALLC---SQALCS---GHGRCVRRTS-HPKALLLLNPASFSIQLTPGGGPLSLR 382
Query: 355 QGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
+ D +KC C P + CE +
Sbjct: 383 GALSLEDQAQMAVEFKCRCYPGWQAPWCERK 413
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response,
innate immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 35.2 bits (80), Expect = 0.095
Identities = 44/365 (12%), Positives = 80/365 (21%), Gaps = 29/365 (7%)
Query: 268 RTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHG-------- 319
C + + D +L + C+ G
Sbjct: 297 MRCTPQGDWSPAAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSA 356
Query: 320 -----TCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCA 374
+C++ F + N + + +
Sbjct: 357 SYCVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRG 416
Query: 375 PSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTT 434
S+ + C + G + C LK Q T
Sbjct: 417 TSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFPIGT 476
Query: 435 GLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSG 494
L+ +C YYG+ + N + + +G G
Sbjct: 477 SLKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSR- 535
Query: 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANK 554
C+ G+ + C+ G S C G A GD
Sbjct: 536 INYSCTTGHRLIGHSSAECILSGNAAHWSTKPPI-CQRIPCGLPPTIANGDFIS------ 588
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV 614
+ +C P G++ E PS + ++ + +S P
Sbjct: 589 TNRENFHYGSVV-------TYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGP-APQ 640
Query: 615 CTCVN 619
C N
Sbjct: 641 CIIPN 645
Score = 32.1 bits (72), Expect = 0.75
Identities = 28/228 (12%), Positives = 49/228 (21%), Gaps = 21/228 (9%)
Query: 363 THPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLK 422
+ P + G R+ G + + VC GF +
Sbjct: 1206 SPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKV----SFVCDEGFRLKGSSVSHCVL 1261
Query: 423 CQNGGV---CVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYS 479
+ V + C P + + E S T P ++
Sbjct: 1262 VGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISYTCD-PHPDRGMTFN 1320
Query: 480 GKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYT-GRR 538
T C + G SP + P + + ++ G
Sbjct: 1321 LIGESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTS 1380
Query: 539 CECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
+C P Y + +E K C
Sbjct: 1381 LNY------------ECRPGYFGKMFSISCLENLVWSSVEDNCRRKSC 1416
Score = 29.0 bits (64), Expect = 7.0
Identities = 45/396 (11%), Positives = 77/396 (19%), Gaps = 51/396 (12%)
Query: 310 RTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTY 369
C L N ICQ G N + Y +
Sbjct: 1002 AECILSGNTAHWS-----TKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNL 1056
Query: 370 KCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVC 429
+ S C + G C+ P +C +NG +
Sbjct: 1057 GSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIP--------NKCTPPNVENGILV 1108
Query: 430 VNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSIT--------DSGPKC---MCSPG- 477
+ F + ++ + + G + P C P
Sbjct: 1109 S-------DNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPE 1161
Query: 478 --YSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNS----KNNVCKCP 531
+ + C PGY + + C G P + +
Sbjct: 1162 ILHGEHTPSHQDNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPEAPRCAVKSCDDFL 1221
Query: 532 SQYTGRRCECAVGDTSCASLANKCTPNY---------CSNNGTCVLIEGKPSC----KCL 578
Q R + A ++ C + C G L C
Sbjct: 1222 GQLPHGRVLFPLNLQLGAKVSFVCDEGFRLKGSSVSHCVLVGMRSLWNNSVPVCEHIFCP 1281
Query: 579 PPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFN 638
P + Y + + + G S I C+ +
Sbjct: 1282 NPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSS 1341
Query: 639 GGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHY 674
E + P
Sbjct: 1342 PAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPV 1377
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 31.8 bits (73), Expect = 0.10
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFY--YGKNCQYS---QCKNYCVNGECSITDSGPKC 472
C G C+N C+CP Y G C + N C NG C G +C
Sbjct: 8 CKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFEC 67
Query: 473 MCSPGYSGKKCDTC 486
C G+ TC
Sbjct: 68 TCEEGFEPGPMMTC 81
Score = 30.6 bits (70), Expect = 0.25
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 456 NYCVNGECSITDSGPKCMCSPGYS--GKKC---DTC---------TCLNGDSGPKCMCSP 501
+ C +G+C TD +C C GY G +C D C TC N G +C C
Sbjct: 12 DVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEE 71
Query: 502 GYSGKKCDTC 511
G+ TC
Sbjct: 72 GFEPGPMMTC 81
Score = 28.7 bits (65), Expect = 1.5
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 221 NHCDDKPCHQSALCINLPSSHTCLCPD 247
+ C + + CIN S+ C CP
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPF 32
Score = 26.4 bits (59), Expect = 9.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 220 TNHCDDKPCHQSALCINLPSSHTCLCPD 247
T+ C + C N+ C C +
Sbjct: 44 TDECSVGNPCGNGTCKNVIGGFECTCEE 71
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 30.5 bits (69), Expect = 0.13
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
FCF+G TCR + + D KP C+C GY G RC+
Sbjct: 14 QFCFHG-TCR---FLVQED-KPACVCHSGYVGARCE 44
Score = 28.6 bits (64), Expect = 0.81
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 316 CNHGTCEFDDDFD-PHCICQENFYGTYCEKV 345
C HGTC F D P C+C + G CE
Sbjct: 16 CFHGTCRFLVQEDKPACVCHSGYVGARCEHA 46
Score = 27.9 bits (62), Expect = 1.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 513 CLNGGTC--IPNSKNNVCKCPSQYTGRRCE 540
C +G TC + C C S Y G RCE
Sbjct: 16 CFHG-TCRFLVQEDKPACVCHSGYVGARCE 44
Score = 26.7 bits (59), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 558 NYCSNNGTCVLIEG--KPSCKCLPPYSGKQC 586
+C + GTC + KP+C C Y G +C
Sbjct: 14 QFCFH-GTCRFLVQEDKPACVCHSGYVGARC 43
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 30.6 bits (69), Expect = 0.13
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672
+C +G C Y +D + C C GY GVRC+
Sbjct: 12 GYCLHG-QCI---YLVDMS-QNYCRCEVGYTGVRCEHFF 45
Score = 28.6 bits (64), Expect = 0.73
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 513 CLNGGTC-IPNSKNNVCKCPSQYTGRRCE 540
CL+G + + N C+C YTG RCE
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGVRCE 42
Score = 26.7 bits (59), Expect = 3.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 316 CNHGTCEFDDDFD-PHCICQENFYGTYCE 343
C HG C + D +C C+ + G CE
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGVRCE 42
Score = 25.9 bits (57), Expect = 6.5
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 558 NYCSNNGTCVLIEG--KPSCKCLPPYSGKQC 586
YC + G C+ + + C+C Y+G +C
Sbjct: 12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRC 41
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 32.0 bits (72), Expect = 0.13
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 553 NKCTPNYCSNNGTCVLIE-GKPSCKCLPPYS--GKQCTEREDSPSCHN---YCDNAGLCS 606
++C C N C + CKCL Y G +C E +P+C+ CD C+
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVE-NPNPTCNENNGGCDADAKCT 63
Query: 607 YSKQG----KPVCTCVNGWS-----GITCSER 629
G K C C S GI CS
Sbjct: 64 EEDSGSNGKKITCECTKPDSYPLFDGIFCSHH 95
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 34.4 bits (79), Expect = 0.14
Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 44/190 (23%)
Query: 13 KREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL-NTGL 71
++ L L N + + ++ W+ + Y + NNI+V E L N+
Sbjct: 2 RKTYTLTDYLKNTYRLKLYSLRWISDHEYLY----KQENNILVFNAEYGNSSVFLENSTF 57
Query: 72 NEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNI--QWPTGITIDY---- 125
+E I+ SI +F L++ N QW T Y
Sbjct: 58 DE-------------------FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98
Query: 126 -PSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNIL 184
++L + + + + + Y V+ +++Y
Sbjct: 99 LNKRQLITEERIPNNTQWVTWSPVGHKLAY-------------VWNNDIYVKIEPNLPSY 145
Query: 185 KINKFGNSDF 194
+I G D
Sbjct: 146 RITWTGKEDI 155
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 30.5 bits (69), Expect = 0.14
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 631 SCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
H+C G CR + + P C+C GY G RC+
Sbjct: 11 QYKHYCIKG-RCR---FVVAEQ-TPSCVCDEGYIGARCE 44
Score = 28.6 bits (64), Expect = 0.83
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 316 CNHGTCEFDDDFD-PHCICQENFYGTYCEKV 345
C G C F P C+C E + G CE+V
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCERV 46
Score = 27.5 bits (61), Expect = 1.9
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 513 CLNGGTC--IPNSKNNVCKCPSQYTGRRCE 540
C+ G C + + C C Y G RCE
Sbjct: 16 CIKG-RCRFVVAEQTPSCVCDEGYIGARCE 44
Score = 26.7 bits (59), Expect = 4.0
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 558 NYCSNNGTCVLIEG--KPSCKCLPPYSGKQC 586
+YC G C + PSC C Y G +C
Sbjct: 14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARC 43
Score = 25.9 bits (57), Expect = 6.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 352 CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE 383
C+ G C + P+ C C Y GARCE
Sbjct: 16 CIK-GRCRFVVAEQTPS--CVCDEGYIGARCE 44
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 34.1 bits (78), Expect = 0.16
Identities = 13/125 (10%), Positives = 31/125 (24%), Gaps = 10/125 (8%)
Query: 402 QTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ--CKNYCV 459
+ Q + C+N P + + Y + +
Sbjct: 49 KHQDFNSAV------QLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETG 102
Query: 460 NGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTC 519
+G +D + + + T +G+ C P + K + T
Sbjct: 103 DGLDEDSDRAIEGATATSEYQTFFNPATFGSGE--ADCGLRPLFEKKSLEDKTERELLES 160
Query: 520 IPNSK 524
+ +
Sbjct: 161 YIDGR 165
Score = 31.0 bits (70), Expect = 1.5
Identities = 11/114 (9%), Positives = 20/114 (17%), Gaps = 6/114 (5%)
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCP 441
++ EN C N + C C C+ E
Sbjct: 55 SAVQLVENFCRNPDGD---EEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDR 111
Query: 442 KFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGP 495
+ + N + + D +S
Sbjct: 112 A---IEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYI 162
Score = 29.8 bits (67), Expect = 3.6
Identities = 21/167 (12%), Positives = 38/167 (22%), Gaps = 36/167 (21%)
Query: 512 TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEG 571
CL + + + S + N+C N
Sbjct: 35 PCLAWASAQAKALSKHQDFNSA-------------------VQLVENFCRNPDGD----- 70
Query: 572 KPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVS 631
+ C Y + + + + + G + G T + S
Sbjct: 71 EEGVWC---YVAGKPGDFGYCDLNYCEEA---VEEETGDGLDEDSD-RAIEGATAT---S 120
Query: 632 CAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYISKK 678
FN T D L+P+ + L YI +
Sbjct: 121 EYQTFFNPATFGSGEA--DCGLRPLFEKKSLEDKTERELLESYIDGR 165
Score = 28.7 bits (64), Expect = 6.9
Identities = 15/154 (9%), Positives = 28/154 (18%), Gaps = 29/154 (18%)
Query: 479 SGKKCD---TCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYT 535
G C + S + C N C
Sbjct: 32 HGLPCLAWASAQAKALSKHQDF-----NSAVQLVENFCRNPDGDEEG-----VWCYV--- 78
Query: 536 GRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSC 595
C + + +G + S + + + + +P+
Sbjct: 79 ---AGKPGDFGYCDLNYCEEAVEEETGDGLD-----EDSDRAIEGATATSEYQTFFNPAT 130
Query: 596 HNY----CDNAGLCSYSKQGKPVCTCVNGWSGIT 625
C L K + S I
Sbjct: 131 FGSGEADCGLRPLFE-KKSLEDKTERELLESYID 163
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 32.8 bits (75), Expect = 0.17
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY 451
C ++ C G C+ C C +YG C+Y
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 155
Score = 32.8 bits (75), Expect = 0.19
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 507 KCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C +C G C+ N C C + G CE
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 32.1 bits (73), Expect = 0.33
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 342 CEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE 383
C + C QG C + + Y C C P + G CE
Sbjct: 117 CYTASCQDMSCSKQGECLETIGN----YTCSCYPGFYGPECE 154
Score = 30.1 bits (68), Expect = 1.3
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 382 CE-SRICENKCHNGGTCIATTQ--TCVCPPGFTGDTCQQCLN 420
C + + C G C+ T TC C PGF G C+ +
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRD 158
Score = 30.1 bits (68), Expect = 1.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 554 KCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
C CS G C+ G +C C P + G +C
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 33.7 bits (76), Expect = 0.19
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 492 DSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCEC 541
+ C C+ + + C+ G + + VC C GR CE
Sbjct: 450 ELHTLCDCNCSDTQPQAPHCSDGQG-----HLQCGVCSCAPGRLGRLCES 494
Score = 31.1 bits (69), Expect = 1.6
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 350 CPCLNQGMCYPDLTHPEPTY---KCHCAPSYTGARCESRICENKCH 392
C C + P + + C CAP G CESR EN
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLENLYF 502
Score = 28.7 bits (63), Expect = 8.6
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 462 ECSITDSGPKC-MCSPGYSGKKCDTCTCLNGDSGPKCMCSPG 502
+C+ +D+ P+ CS G +C C+C G G C
Sbjct: 456 DCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGL 497
Score = 28.4 bits (62), Expect = 9.6
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 10/62 (16%)
Query: 535 TGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPS 594
C+C DT + P+ G G C C P G+ C R
Sbjct: 451 LHTLCDCNCSDTQPQA------PHCSDGQGHLQ--CGV--CSCAPGRLGRLCESRGLENL 500
Query: 595 CH 596
Sbjct: 501 YF 502
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 31.2 bits (70), Expect = 0.20
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 631 SCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671
FC +G C+ Y + P CIC GY G RC L
Sbjct: 43 KYKDFCIHG-ECK---YVKELR-APSCICHPGYHGERCHGL 78
Score = 30.8 bits (69), Expect = 0.28
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 316 CNHGTCEFDDDFD-PHCICQENFYGTYCE 343
C HG C++ + P CIC ++G C
Sbjct: 48 CIHGECKYVKELRAPSCICHPGYHGERCH 76
Score = 28.2 bits (62), Expect = 2.1
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 558 NYCSNNGTCVLIE--GKPSCKCLPPYSGKQC 586
++C + G C ++ PSC C P Y G++C
Sbjct: 46 DFCIH-GECKYVKELRAPSCICHPGYHGERC 75
Score = 27.8 bits (61), Expect = 2.7
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 513 CLNGGTC--IPNSKNNVCKCPSQYTGRRCE 540
C++G C + + C C Y G RC
Sbjct: 48 CIHG-ECKYVKELRAPSCICHPGYHGERCH 76
Score = 27.0 bits (59), Expect = 5.8
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 352 CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE 383
C++ G C C C P Y G RC
Sbjct: 48 CIH-GECK--YVKELRAPSCICHPGYHGERCH 76
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 33.5 bits (77), Expect = 0.21
Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 24/155 (15%)
Query: 4 ISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK 63
+ + L + H G ++ G +L G R + G +
Sbjct: 47 VRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQG-HLIACSHGLR---RLERQREPGGEW 102
Query: 64 RTLLNT----GLNEPYDIALEPLSGRMFWTELG-----------IKPRISGAS---IDGK 105
++ ++ LN P D+ L P G +++++ + + G +
Sbjct: 103 ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161
Query: 106 NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
+ + P G+ PS L +D
Sbjct: 162 GTLSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNAT 195
Score = 28.5 bits (64), Expect = 7.6
Identities = 13/114 (11%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 102 IDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK-DRFVVYHTEDNG 160
+ + + W G + ++D + + + +G+ + NG
Sbjct: 14 FPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNG 73
Query: 161 YKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN-----LNRASDVLI 209
+ K + +L ++ + + ++ +A++ LN +DV +
Sbjct: 74 HCLNK----QGHLIACSHGLRRLERQR-EPGGEWESIADSFEGKKLNSPNDVCL 122
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 33.1 bits (74), Expect = 0.32
Identities = 25/249 (10%), Positives = 39/249 (15%), Gaps = 4/249 (1%)
Query: 411 TGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGP 470
+ + C K QC +C +
Sbjct: 152 DAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDE 211
Query: 471 KCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKC 530
G C C N C K N T V C
Sbjct: 212 CAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASC 271
Query: 531 PSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTERE 590
P + + C +C+ S Q +
Sbjct: 272 PHNFVVDQTSC----VRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSS 327
Query: 591 DSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLD 650
+ N G + G + V G +
Sbjct: 328 NIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHM 387
Query: 651 PDLKPICIC 659
+
Sbjct: 388 HNFSVFSNL 396
Score = 32.7 bits (73), Expect = 0.49
Identities = 33/350 (9%), Positives = 59/350 (16%), Gaps = 9/350 (2%)
Query: 261 SCKVAPARTCYLDCNHGNLPSSHTCLCPDHLT--EELNVTSGKMSCKVAPARTCYLDCNH 318
P T C H N + CP L + K C C H
Sbjct: 214 GGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPH 273
Query: 319 GTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYT 378
C + K+ + T +
Sbjct: 274 NFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFV 333
Query: 379 GARC-------ESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVN 431
+ + + V + V
Sbjct: 334 NCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVF 393
Query: 432 KTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNG 491
+ G + + N G S+ + +
Sbjct: 394 SNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTK 453
Query: 492 DSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASL 551
+ G C P + C P C C +
Sbjct: 454 VLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTH 513
Query: 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDN 601
N P C+ + + + + C ++ D
Sbjct: 514 CNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDG 563
Score = 32.3 bits (72), Expect = 0.58
Identities = 33/284 (11%), Positives = 61/284 (21%), Gaps = 16/284 (5%)
Query: 386 ICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY 445
C +C T P C+ C + V + C K
Sbjct: 235 ACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCV-ASCPHNFVVDQTSCVRACPPDKMEV 293
Query: 446 G-KNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYS 504
+ + C T SG + + CT + G+ G
Sbjct: 294 DKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDP 353
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG 564
K V + + + + S S N G
Sbjct: 354 WHKIPALDPEKLNVF-----RTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRG 408
Query: 565 TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGI 624
+LI + L S K+ + S + +++K +
Sbjct: 409 FSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHN 468
Query: 625 TCSERV---------SCAHFCFNGGTCREQNYSLDPDLKPICIC 659
C+ G + + +C+
Sbjct: 469 RPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVT 512
Score = 31.9 bits (71), Expect = 0.77
Identities = 60/457 (13%), Positives = 102/457 (22%), Gaps = 42/457 (9%)
Query: 206 DVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVA 265
V I + +K H T D + A + + +C + + G C+
Sbjct: 127 GVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTL 186
Query: 266 PARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGK--MSCK-VAPARTCYLDCNHGT-- 320
C CN + C D + +C+ + C C
Sbjct: 187 TKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVY 246
Query: 321 ----------CEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYK 370
+ C+ + CP + L EP
Sbjct: 247 NKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGG 306
Query: 371 C---HCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGG 427
C + +G+R ++ N G GD + L +
Sbjct: 307 LCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLN 366
Query: 428 VCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCD--- 484
V + + +S N G S+ + G + +
Sbjct: 367 VFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRS 426
Query: 485 TCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRC--ECA 542
G Y T + K+N + G+ C C+
Sbjct: 427 LKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCS 486
Query: 543 VGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNA 602
G + S G CV + + +C CH C
Sbjct: 487 SGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFS------CHPECQP- 539
Query: 603 GLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNG 639
+G CAHF
Sbjct: 540 ------------MEGTATCNGSGSDTCAQCAHFRDGP 564
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 33.1 bits (75), Expect = 0.37
Identities = 49/346 (14%), Positives = 79/346 (22%), Gaps = 53/346 (15%)
Query: 220 TNHCDDKPCHQSALCINLPS-SHTCL-CPDHLTEELNVTSGKMSCKVAPARTCYLDCNHG 277
+ C PC A C + P S +C CP C + P
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPR 62
Query: 278 --NLPSSHTCL-CPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQ 334
N CL CP + CE ++
Sbjct: 63 CVNTQPGFHCLPCPP----------RYRGNQPVGVGLEAAKTEKQVCEPENP-------- 104
Query: 335 ENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICEN----- 389
C+ + C C +P YKC C Y G +
Sbjct: 105 -------CKDKTH---NCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWP 154
Query: 390 ----KCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY 445
C T C P + + + + T + +C +
Sbjct: 155 NLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFN 214
Query: 446 GKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSG 505
+ Y + + C + + G C + + C Y+
Sbjct: 215 PRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNT 274
Query: 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGR---RCECAVGDTSC 548
+ DT G ++ CP + VGD
Sbjct: 275 DQRDTDGDGVG--------DHCDNCPLVHNPDQTDVDNDLVGDQCD 312
Score = 31.9 bits (72), Expect = 0.85
Identities = 42/285 (14%), Positives = 67/285 (23%), Gaps = 30/285 (10%)
Query: 225 DKPCHQSALCINLPSSHTCL-CPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSH 283
+ C+N CL CP V G + K + C + + +H
Sbjct: 54 CFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAK-TEKQVCEPENPCKD--KTH 110
Query: 284 TCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCE 343
C + + C +T Y + C D D D
Sbjct: 111 NCHKHAECIYLGHFSDPMYKC---ECQTGY-AGDGLICGEDSDLDGWPNLNLVCATNATY 166
Query: 344 KVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQT 403
CP L E K + + + K + +
Sbjct: 167 HCIKDNCPHLPNSGQ-------EDFDKDGIGDACDDDDDNDGVTDEKDNCQLLF--NPRQ 217
Query: 404 CVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGK-----NCQY---SQCK 455
GD C C + N G C NC Y + +
Sbjct: 218 ADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQR 277
Query: 456 NYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCS 500
+ +G D+ C ++ + D L GD
Sbjct: 278 DTDGDGVGDHCDN-----CPLVHNPDQTDVDNDLVGDQCDNNEDI 317
Score = 30.8 bits (69), Expect = 2.1
Identities = 29/141 (20%), Positives = 42/141 (29%), Gaps = 24/141 (17%)
Query: 508 CDTCTCLNGGTCI--PNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGT 565
C + C G C P+ + CP + G C D CA + + C S
Sbjct: 6 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDE-CALVPDICFS--TSKVPR 62
Query: 566 CVLIEGKPSCK-CLPPYSGKQ--CTEREDSPSCHNYCDNAGLCS---------------- 606
CV + C C P Y G Q E + + C+ C
Sbjct: 63 CVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLG 122
Query: 607 YSKQGKPVCTCVNGWSGITCS 627
+ C C G++G
Sbjct: 123 HFSDPMYKCECQTGYAGDGLI 143
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 32.7 bits (74), Expect = 0.42
Identities = 32/179 (17%), Positives = 50/179 (27%), Gaps = 26/179 (14%)
Query: 354 NQGMCYPDLTHPEPTYK-CHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTG 412
++ C + C + E + C A T C
Sbjct: 195 DRPQCILNKPLSTDIVSPPICGNYFVEVGEECDCGSPQACQSACCNAAT----CQFKGAE 250
Query: 413 DTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY---GKNCQYSQCKNYCVNGECSITDSG 469
C+ + C +C TG +CP G CQ +Q YC NG C +
Sbjct: 251 TECRVAKD-DCDLPELC----TGQSAECPTDSLQRNGHPCQNNQS--YCYNGTCPTLTNQ 303
Query: 470 PKCMCSPGYSG---------KKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTC 519
+ P ++ + D + + G K C+ KC C T
Sbjct: 304 CITLLGPHFTVSPKGCFNLNMRGDDGSFCRMEDGTKIPCAAKD--VKCGRLYCTEKNTM 360
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 32.4 bits (74), Expect = 0.51
Identities = 20/132 (15%), Positives = 34/132 (25%), Gaps = 23/132 (17%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT----GLNEPYDIAL---- 79
P G D L+ D ++V +G + + D A
Sbjct: 73 PAGCQCDRDANQLFVADMRLG----LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG 128
Query: 80 -----EPLSGRMFWTELGIKPRISGA--SIDGKNKFNLVDNNIQWPTGITI----DYPSQ 128
P G+ + VD Q+P GI + D
Sbjct: 129 NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPY 188
Query: 129 RLYWADPKARTI 140
+L A+ + +
Sbjct: 189 QLIVAETPTKKL 200
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 28.5 bits (63), Expect = 0.83
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 513 CLNGGTC--IPNSKNNVCKCPSQYTGRRCE 540
CLNGG I + + C C Y+G RC+
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
Score = 26.6 bits (58), Expect = 3.7
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 635 FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
+C NGG ++ C C GY+G RCQ
Sbjct: 10 YCLNGGVX----MHIESLDSYTCNCVIGYSGDRCQ 40
Score = 26.6 bits (58), Expect = 4.0
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 555 CTPNYCSNNGTCVLIEG--KPSCKCLPPYSGKQCTERE 590
YC N G + IE +C C+ YSG +C R+
Sbjct: 6 SYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD 43
Score = 25.8 bits (56), Expect = 6.5
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 423 CQNGGVC--VNKTTGLECDCPKFYYGKNCQYSQCK 455
C NGGV + C+C Y G CQ +
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRDLR 45
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 30.2 bits (67), Expect = 0.91
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 511 CTCLNGGTC---IPNSKNNVCKCPSQYTGRRCEC 541
C CLNGGTC S + C CP ++ G+ CE
Sbjct: 1 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 34
Score = 27.5 bits (60), Expect = 8.5
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 423 CQNGGVCVNKTTGLE---CDCPKFYYGKNCQYSQCKNYCVN------GECSITDSGPKCM 473
C NGG CV+ C+CPK + G++C+ + K G+ S G C+
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCL 62
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 31.6 bits (71), Expect = 1.0
Identities = 47/318 (14%), Positives = 79/318 (24%), Gaps = 30/318 (9%)
Query: 363 THPEPTYKCHCAPSYTGARCESRICENKCHNGGTC-IATTQTCVCPPGFTGDTCQQCLNL 421
P A + N G+ + T C G+ + +
Sbjct: 119 GPTRLPTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKI---I 175
Query: 422 KCQNGGVCVNKT-TGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSG 480
C + G T E C N + + V + C GY
Sbjct: 176 NCLSSGKWSAVPPTCEEARCKSLGRFPNGKVKEPPILRVGVTANFF-------CDEGYRL 228
Query: 481 KKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVC-------KCPSQ 533
+ + C+ G P C + + G I NS NV C
Sbjct: 229 QGPPSSRCVIAGQGVAWTKMPVCEEIFCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPD 288
Query: 534 YTGRRCECAVGDTSCASLAN-KCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDS 592
+G+++ + + T + C L C G+ + ++D
Sbjct: 289 PEEGVNFILIGESTLRCTVDSQKTGTWSGPAPRCELSTSAVQCPHPQILRGRMVSGQKDR 348
Query: 593 PSCHNYCD---NAGLCSYSKQGKPVCTCV--NGWSGITCSERVSCAHFCF--NGGTCREQ 645
+ ++ G ++ +G C W C NG
Sbjct: 349 YTYNDTVIFACMFG---FTLKGSKQIRCNAQGTWEPSAPVCEKECQAPPNILNGQKEDRH 405
Query: 646 NYSLDPDLKPICICPRGY 663
DP C GY
Sbjct: 406 MVRFDPGTSIKYSCNPGY 423
Score = 31.3 bits (70), Expect = 1.5
Identities = 31/213 (14%), Positives = 51/213 (23%), Gaps = 35/213 (16%)
Query: 365 PEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQ 424
+ P + R + + C G + + C + C
Sbjct: 452 EATGRQLLTKPQHQFVRPD---VNSSCGEGYKLSGSVYQECQGTIPWFMEIRLCKEITCP 508
Query: 425 NGGVCVNKTTGLECDCPKFYYGKNCQYS------QCKNYCVNGECSIT----------DS 468
V N F YG Y+ + + + GE +I S
Sbjct: 509 PPPVIYNGAHTGSSLED-FPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTWS 567
Query: 469 GPKCMCSPGYSGKKCDTCTCLNG----------DSGPKCM--CSPGYSGKKCDTCTCLNG 516
GP +C +C NG C G++ K C
Sbjct: 568 GPAPLCKLSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKAD 627
Query: 517 GTC---IPNSKNNVCKCPSQYTGRRCECAVGDT 546
T IP + C+ Q + +
Sbjct: 628 NTWDPEIPVCEKETCQHVRQSLQELPAGSRVEL 660
Score = 29.7 bits (66), Expect = 4.8
Identities = 31/303 (10%), Positives = 68/303 (22%), Gaps = 27/303 (8%)
Query: 320 TCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTG 379
+ +C+E F + +N + Y + ++
Sbjct: 238 IAGQGVAWTKMPVCEEIFCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFIL 297
Query: 380 ARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECD 439
+ C GT C + QC + + G +
Sbjct: 298 IGESTLRCTVDSQKTGTWSGPAPRCELS-----TSAVQCPHPQILRGRMVS-------GQ 345
Query: 440 CPKFYYGKNCQYSQCKNYCVNGECSIT------DSGPKCMC--------SPGYSGKKCDT 485
++ Y ++ + + G I +C + K+
Sbjct: 346 KDRYTYNDTVIFACMFGFTLKGSKQIRCNAQGTWEPSAPVCEKECQAPPNILNGQKEDRH 405
Query: 486 CTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGD 545
+ + K C+PGY ++ C + G P +
Sbjct: 406 MVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQCKVAACEATGRQLLTKPQHQ 465
Query: 546 TSCASLANKCTPNY-CSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGL 604
+ + C Y S + P + C + + +
Sbjct: 466 FVRPDVNSSCGEGYKLSGSVYQECQGTIPWFMEIRLCKEITCPPPPVIYNGAHTGSSLED 525
Query: 605 CSY 607
Y
Sbjct: 526 FPY 528
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 31.1 bits (70), Expect = 1.4
Identities = 10/53 (18%), Positives = 13/53 (24%), Gaps = 4/53 (7%)
Query: 579 PPYSGKQCTEREDSPSC----HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCS 627
P C + C C + G C C GW+G
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGIL 57
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural
genomics, joint center F structural genomics, JCSG; HET:
MSE; 1.75A {Bacteroides vulgatus}
Length = 369
Score = 30.9 bits (69), Expect = 1.4
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 9/97 (9%)
Query: 112 DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK--DRFVVYHTEDN------GYKP 163
N + G SQ + A + SIN G+ + E G
Sbjct: 75 PNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQGEIIRNYNFQTPEGRFTPLSFGSYY 134
Query: 164 YKLEVFEDN-LYFSTYRTNNILKINKFGNSDFNVLAN 199
+D+ ++ +K + + +
Sbjct: 135 NAPAFIKDSCIFLRQEILKPDMKKEDWPRTHMFASQD 171
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 30.9 bits (70), Expect = 1.5
Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 25/155 (16%)
Query: 476 PGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYT 535
Y K + C ++G + + G+ K T C G+ + C
Sbjct: 33 AKYILKDSFSIFC---ETGYELLQ--GHLPLKSFTAVCQKDGSW----DRPMPACSIVDC 83
Query: 536 GRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSC 595
G + G + T Y + C + T + +
Sbjct: 84 GPPDDLPSGRVEYITGPGVTT--YKAVI----------QYSCEETF----YTMKVNDGKY 127
Query: 596 HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV 630
D S ++ PVC V G S T ++
Sbjct: 128 VCEADGFWTSSKGEKSLPVCEPVCGLSARTTGGQI 162
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 30.3 bits (68), Expect = 1.7
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 15/72 (20%)
Query: 445 YGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYS 504
Y + C + CVN C+ C + +S K C +
Sbjct: 150 YKSGPPCADCPSACVNRLCT-----NPCNYNNDFSNCKSLAKKSK---------CQTEWI 195
Query: 505 GKKCD-TCTCLN 515
KKC +C C N
Sbjct: 196 KKKCPASCFCHN 207
Score = 28.3 bits (63), Expect = 7.0
Identities = 10/48 (20%), Positives = 12/48 (25%)
Query: 585 QCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSC 632
C + C N C+ S K C W C C
Sbjct: 158 DCPSACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASCFC 205
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 27.6 bits (61), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 558 NYCSNNGTCVLIEG--KPSCKCLPPYSGKQCTER 589
N+C + G C IE +CKC Y G++C E+
Sbjct: 18 NFCIH-GECKYIEHLEAVTCKCQQEYFGERCGEK 50
Score = 25.6 bits (56), Expect = 9.4
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRC 668
+FC +G C+ Y + C C + Y G RC
Sbjct: 18 NFCIHG-ECK---YIEHLE-AVTCKCQQEYFGERC 47
>2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel, hydrola; 0.86A
{Vibrio SP}
Length = 333
Score = 30.5 bits (68), Expect = 2.0
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 33 VDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78
VDWVG + + N + K LN + Y +A
Sbjct: 176 VDWVGLSYFAPQDCNWDRVNEAAQFARSKGKPLFLNESTPQRYQVA 221
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 30.4 bits (68), Expect = 2.4
Identities = 36/164 (21%), Positives = 49/164 (29%), Gaps = 26/164 (15%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKT---------TGLE 437
C + C + TC C G C QC G C TG
Sbjct: 242 CRDPCCDATTCKLRQGA-QCAEG---LCCDQCRFKG--AGTECRAAKDECDMADVCTGRS 295
Query: 438 CDCPKFYY--GKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGP 495
+C + G+ C+ + YC NG+C I + PG + D C N +
Sbjct: 296 AECTDRFQRNGQPCKNNNG--YCYNGKCPIMADQCIALFGPGATV-SQDACFQFNREGNH 352
Query: 496 KCMCSPGYSGKKCDTCTCLNGG----TCIPNSKNNVCKCPSQYT 535
C C + C PNS N C Y+
Sbjct: 353 YGYC--RKEQNTKIACEPQDVKCGRLYCFPNSPENKNPCNIYYS 394
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 30.2 bits (68), Expect = 2.5
Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 9/89 (10%)
Query: 509 DTCTCLNG--GTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTC 566
D CT +G G C+P C + G A A+ C
Sbjct: 30 DDCTTPDGDQGQCMP-----FSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGV 84
Query: 567 VLIEGKPSCKCLPPYSGKQCTEREDSPSC 595
+ +++ C
Sbjct: 85 RHFCCPSANIQHNSKVMSLFK--DENFDC 111
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 30.3 bits (67), Expect = 2.7
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 359 YPDLTHPEPTYKCHCAPSYTGARCESRICEN--KCHNG-GTCIATTQTCVCPPGFTGDTC 415
+ D + T+ C C C+++ N +C+NG GT C C PG+ G C
Sbjct: 421 FKDSLIVQVTFDCDC-------ACQAQAEPNSHRCNNGNGTF--ECGVCRCGPGWLGSQC 471
Query: 416 Q 416
+
Sbjct: 472 E 472
Score = 30.3 bits (67), Expect = 2.7
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 9/48 (18%)
Query: 437 ECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCD 484
+C C + + + G C C PG+ G +C+
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFECG---------VCRCGPGWLGSQCE 472
Score = 28.7 bits (63), Expect = 7.9
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 9/114 (7%)
Query: 398 IATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNY 457
++ + C + C+ LK + + C + + S
Sbjct: 366 LSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCP-------QEKEKSFTIKP 418
Query: 458 CVNGECSITDSGPKCMCS-PGYSGKKCDTCTCLNGD-SGPKCMCSPGYSGKKCD 509
+ I C C+ + C NG C C PG+ G +C+
Sbjct: 419 VGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 30.3 bits (68), Expect = 2.9
Identities = 19/123 (15%), Positives = 31/123 (25%), Gaps = 11/123 (8%)
Query: 371 CHCAPSYTGARCESRICENKCHNGGTCIATTQTCV----CPPGFTGDTCQQC--LNLKCQ 424
YT +C NG I+ + C C C+ C C+
Sbjct: 191 FADVVCYTQKADSPMDDFFQCVNG-KYISQMKACDGINDCGDQSDELCCKACQGKGFHCK 249
Query: 425 NGGVCVNKTTGLECDCPKFYYGKNCQYSQCK-NYCVNGECSITDSGPKCMCSPGYSGKKC 483
+ GVC+ +C+ + E I + S
Sbjct: 250 S-GVCIPSQY--QCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPK 306
Query: 484 DTC 486
+C
Sbjct: 307 LSC 309
Score = 29.1 bits (65), Expect = 6.0
Identities = 18/147 (12%), Positives = 34/147 (23%), Gaps = 19/147 (12%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTG-------DTCQQCLNLKCQNG------GVCVNKT 433
C + C T + + F +C NG C
Sbjct: 168 CRGLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDG-- 225
Query: 434 TGLECDCPKFYYGKNCQYSQCKNY-CVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGD 492
DC C+ Q K + C +G C + + +
Sbjct: 226 ---INDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVA 282
Query: 493 SGPKCMCSPGYSGKKCDTCTCLNGGTC 519
+ + ++ + L +C
Sbjct: 283 QEETEILTADMDAERRRIKSLLPKLSC 309
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB:
1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 29.7 bits (66), Expect = 3.1
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 358 CYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTC 397
P P + C A +Y C + C + H+
Sbjct: 42 GQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCT 81
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 29.4 bits (65), Expect = 3.4
Identities = 18/121 (14%), Positives = 27/121 (22%), Gaps = 15/121 (12%)
Query: 446 GKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSG 505
G C C + +G C + C + G C +P +
Sbjct: 1 GATCLSQYCADKARDGVCDEACNSHAC----QWDGGDCSLTME-----------NPWANC 45
Query: 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGT 565
C C C + + D CA N N+
Sbjct: 46 SSPLPCWDYINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCNQGCNSEE 105
Query: 566 C 566
C
Sbjct: 106 C 106
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 29.5 bits (65), Expect = 3.5
Identities = 11/58 (18%), Positives = 17/58 (29%)
Query: 525 NNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYS 582
+G C + C C C ++ G+P C+C P S
Sbjct: 43 TAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCS 100
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 29.8 bits (66), Expect = 3.7
Identities = 13/116 (11%), Positives = 28/116 (24%), Gaps = 3/116 (2%)
Query: 528 CKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587
PSQ+ G C + + C C + + L
Sbjct: 35 LLQPSQFHGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGD 94
Query: 588 EREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCR 643
+ +++ Y + + +N ++ S + G C
Sbjct: 95 QSDEANCRRIYKKCQHEMDQYWGIGSLASGINLFTN---SFEGPVLDHRYYAGGCS 147
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 29.5 bits (65), Expect = 4.2
Identities = 15/114 (13%), Positives = 25/114 (21%), Gaps = 18/114 (15%)
Query: 264 VAPARTCYLDCNHGNLPSSHTCLC-----------PDH----LTEELNVTSGKMSCKVAP 308
+ +C C C C D L K C
Sbjct: 17 TNTSGSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVR 76
Query: 309 ARTCYLDCNHGTCEFDD---DFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCY 359
C+ D ++ C + ++ CE++ CP
Sbjct: 77 NEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPL 130
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 29.6 bits (66), Expect = 4.4
Identities = 43/240 (17%), Positives = 69/240 (28%), Gaps = 25/240 (10%)
Query: 336 NFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGG 395
Y C ++ +C ++ C + C++ C K G
Sbjct: 194 TRYKPKCIFNPPLRKDIVSPPVCGNEIWEEGEECDCGSPANCQNPCCDAATC--KLKPGA 251
Query: 396 TCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY---GKNCQYS 452
C C G C++ + +C C TG +CP+ GK CQ +
Sbjct: 252 ECGNGLCCYQCKIKTAGTVCRRARD-ECDVPEHC----TGQSAECPRDQLQQNGKPCQNN 306
Query: 453 QCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCT 512
+ YC NG+C I + + +C + + C
Sbjct: 307 R--GYCYNGDCPIMRNQCISLFGSRA---NVAKDSCFQENLKGSYYGYCRKENGRKIPCA 361
Query: 513 CLNG----GTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPN-YCSNNGTCV 567
+ C+ NS N C Y+ C KC C+N CV
Sbjct: 362 PQDVKCGRLFCLNNSPRNKNPCNMHYS-----CMDQHKGMVDPGTKCEDGKVCNNKRQCV 416
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 29.0 bits (65), Expect = 4.5
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 7/72 (9%)
Query: 518 TCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKC 577
+ ++ K +CEC + C N +IE C
Sbjct: 45 ENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLL--MIECSSRCPN 102
Query: 578 LPPYSGKQCTER 589
G C+ R
Sbjct: 103 -----GDYCSNR 109
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 29.6 bits (65), Expect = 4.9
Identities = 21/190 (11%), Positives = 34/190 (17%), Gaps = 9/190 (4%)
Query: 386 ICENKCHNGGTCIATTQTCVCPP--GFTGDTCQQCLNLKCQNG---GVCVNKTTGLECDC 440
+ + C C G + + CQ C +G T C
Sbjct: 160 PVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQC 219
Query: 441 PKFYYGKNC-QYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMC 499
G C ++ +G C + + + G S
Sbjct: 220 AAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCP 279
Query: 500 SPGY---SGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCT 556
G C N + KC + A
Sbjct: 280 YNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDN 339
Query: 557 PNYCSNNGTC 566
Sbjct: 340 VQEFDGCKKI 349
Score = 29.2 bits (64), Expect = 6.2
Identities = 49/366 (13%), Positives = 78/366 (21%), Gaps = 40/366 (10%)
Query: 314 LDCNHGTCEFDDDFDPHCICQENFY---GTYCEKVNNSMCPCLNQGMC---YPDLTHPEP 367
N+ D D + C +C + C L +C P
Sbjct: 152 FRKNNQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLP 211
Query: 368 TYKCH--CAPSYTGAR----------CESRICENKCHNGGTCIATTQTCVCPPGFTGDTC 415
T CH CA TG + S ICE C T T + P
Sbjct: 212 TDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFG 271
Query: 416 QQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKN---------------CQYSQCKNYCVN 460
C+ N + L C Y +
Sbjct: 272 ASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRG 331
Query: 461 GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCI 520
+D+ + G +GD + +T + G I
Sbjct: 332 ARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLYI 391
Query: 521 PNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCT-------PNYCSNNGTCVLIEGKP 573
+++ R + SL + + LI
Sbjct: 392 SAWPDSLRDLSVFQNLRIIRGRILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALIHRNA 451
Query: 574 SCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCA 633
+ Q H+ C G ++ V+C+
Sbjct: 452 HLCFVHTVPWDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCS 511
Query: 634 HFCFNG 639
HF
Sbjct: 512 HFLRGQ 517
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 28.4 bits (62), Expect = 5.0
Identities = 26/132 (19%), Positives = 39/132 (29%), Gaps = 28/132 (21%)
Query: 418 CLNLKCQNGGVCVNKTTGLE---CDCPKFYYGKNCQYSQCKNY------CVNGECSITDS 468
N C NGG CV+ C+CPK + G++C+ + K G+ S
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTM 69
Query: 469 GPKCM-----------------CSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK--CD 509
G C+ + K + C + P C G C
Sbjct: 70 GRPCLPWNSATVLQQTYHAHRSDALQLGLGKHNYCRNPDNRRRPWCYVQVGLKPLVQECM 129
Query: 510 TCTCLNGGTCIP 521
C +G
Sbjct: 130 VHDCADGKKPSS 141
Score = 27.6 bits (60), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 508 CDTCTCLNGGTC---IPNSKNNVCKCPSQYTGRRCEC 541
C CLNGGTC S + C CP ++ G+ CE
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 46
>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice
dwarf virus} SCOP: e.28.1.2
Length = 1019
Score = 29.4 bits (65), Expect = 5.3
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 183 ILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKP 227
+ +NK G+ + + LA +L DV+ Q + P
Sbjct: 155 SVTLNKLGDRNMDALAEHLLFEHDVVNAQRENRIFYQRKSAPAVP 199
>3iyp_F Complement decay-accelerating factor; virus, receptor, complex,
echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo
sapiens}
Length = 381
Score = 28.9 bits (64), Expect = 5.6
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 19/130 (14%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSIT---------- 466
+C + C N ++ + + Y ++ Y+ K + + GE SI
Sbjct: 219 ECREIYCPAPPQIDNGI--IQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEW 276
Query: 467 -DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGT---CIPN 522
P+C G S T + + +K T T P
Sbjct: 277 SGPPPECR---GKSLTSKVPPTVQKPTTVNVPTTEVSPTSQKTTTKTTTPNAQATRSTPV 333
Query: 523 SKNNVCKCPS 532
S+ +
Sbjct: 334 SRTTKHFHET 343
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 28.7 bits (63), Expect = 6.0
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 4/113 (3%)
Query: 537 RRCECAVGDTSCASLANKCTPNY----CSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDS 592
C+ G+ C+ N + CS N S +C +S C + +S
Sbjct: 8 PECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNS 67
Query: 593 PSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQ 645
C + C + +S C + + A ++G C E
Sbjct: 68 AGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEH 120
Score = 28.7 bits (63), Expect = 6.3
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 447 KNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDT-CTCLNGDSGPKCMCSPGYSG 505
+ C+ +C+ N CS+ + C G+ G C + C +S
Sbjct: 3 EACELPECQEDAGNKVCSLQCNNHAC----GWDGGDCSLNFNDPWKNCTQSLQCWKYFSD 58
Query: 506 KKCD----TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNY 559
CD + CL G + + +C Y + C+ D C N +
Sbjct: 59 GHCDSQCNSAGCLFDGF---DCQRAEGQCNPLY-DQYCKDHFSDGHCDQGCNSAECEW 112
Score = 27.9 bits (61), Expect = 9.8
Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 13/110 (11%)
Query: 312 CYLDCNHGTCEFD------------DDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCY 359
C L CN+ C +D + C + F +C+ NS + C
Sbjct: 19 CSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQ 78
Query: 360 PDLTHPEPTYKCHCAPSYTGARCESRICENKCH-NGGTCIATTQTCVCPP 408
P Y +C ++ C+ +C +G C +
Sbjct: 79 RAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAG 128
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 29.0 bits (64), Expect = 6.5
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 105 KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPY 164
N +V + GI I + +Y A+ A I +
Sbjct: 210 PNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV- 268
Query: 165 KLEVFEDNLYF 175
DN+
Sbjct: 269 ------DNISV 273
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 28.2 bits (62), Expect = 9.2
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 3/96 (3%)
Query: 315 DCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCA 374
DC+ + + C + F +C+ NS + C P Y +C
Sbjct: 34 DCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCK 93
Query: 375 PSYTGARCESRICENK--CHNGGTCIATTQTCVCPP 408
++ C+ C + +G C +
Sbjct: 94 DHFSDGHCDQG-CNSAECEWDGLDCAEHVPERLAAG 128
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 28.1 bits (61), Expect = 9.3
Identities = 28/239 (11%), Positives = 51/239 (21%), Gaps = 17/239 (7%)
Query: 370 KCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQ----CLNLKCQN 425
+ + C S + T C C N+ C
Sbjct: 14 QVLYKTELSKEECCSTGRLSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGP 73
Query: 426 GGVC-VNKTTGLECDCPKFYYGKNCQYSQC-------KNYCVNGECSITDSGPKCMCSPG 477
G C +NK C C + C +N C + + + G
Sbjct: 74 GKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQG 133
Query: 478 YSGKKCDTCTCLNGDS---GPKCMCSPGYSGKKCDTCTCLNGGTCIPNSK--NNVCKCPS 532
K C C + + C C + ++ C
Sbjct: 134 RCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRK 193
Query: 533 QYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTERED 591
+ A C C+ C+ +C ++ ++
Sbjct: 194 ATCLLGRSIGLAYEGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDE 252
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 28.5 bits (63), Expect = 9.5
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 11/135 (8%)
Query: 321 CEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGA 380
F ++ C + +C V CL + + + T C
Sbjct: 238 LTFGPEYSV-CPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVDKT 296
Query: 381 RCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDC 440
+ + + + G + C G + C N +N G C
Sbjct: 297 KKKYYSTSSHGNWGSWGSWGQCSRSCGGG-VQFAYRHCNNPAPRNNGRY--------CTG 347
Query: 441 PKFYYGKNCQYSQCK 455
+ Y ++C C
Sbjct: 348 KRAIY-RSCSLMPCP 361
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.459
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,849,624
Number of extensions: 690483
Number of successful extensions: 6189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2614
Number of HSP's successfully gapped: 1094
Length of query: 713
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 613
Effective length of database: 3,909,693
Effective search space: 2396641809
Effective search space used: 2396641809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)