BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6572
(1416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 249/709 (35%), Positives = 355/709 (50%), Gaps = 80/709 (11%)
Query: 206 KANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNS-TGQCIP 264
+ N FQC + K CIS WVCDG+ +C D SDE+ C C +F C +CIP
Sbjct: 5 RCERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 63
Query: 265 ITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
W CDG DC + SDE Q C +TC + F+C +G+C+ + CD + DC D SDE
Sbjct: 64 QFWRCDGQVDCDNGSDE---QGC-PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 119
Query: 325 ---PIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPS------CPKTDCDNSTHF 375
P+++ ++C + C+ + + CD + DC D SDE P + D + F
Sbjct: 120 ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAF 179
Query: 376 E--CQNGNCIPSVLLCNGVNDCDDNSDEDM--------------------------NHAE 407
E C +G CI S C+G DC D SDE+ +
Sbjct: 180 EFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYD 239
Query: 408 CRSLKD--------LCKHPSHFLCSNGLCINETLTCNDINDCGDNSDE--FSCFVNECNV 457
C+ + D LC+ P+ F C +G CI CN DC D SDE C NEC
Sbjct: 240 CKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD 299
Query: 458 SHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRNTLGSYS 516
++GG C+H C DLKIGY+C C G+Q+ + + C D +EC D CS C N G Y
Sbjct: 300 NNGG--CSHVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVNLEGGYK 355
Query: 517 CSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVT-QAGVMTIRIHNQTNAVGLDFD 575
C C G+ L CKA + L FTN++ +R++T T I N N V LD +
Sbjct: 356 CQCEEGFQLDPHTKACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 414
Query: 576 WVDNCLYWSDVTMH---GSSIRRSCNNSQPELLFP--ATSPDGLTVDWVGRNLYWCDKGL 630
N +YWSD++ + + R+ S + + +PDGL VDW+ N+YW D L
Sbjct: 415 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 474
Query: 631 DTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVI 690
T+ VA G RK L + +PR I ++P +G+MYWTDWG A I K ++G + +
Sbjct: 475 GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534
Query: 691 ISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFAL 750
+++N+ WPN +T+ + L+W D+ I+ D+NG N K I ++ L H F+L
Sbjct: 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI----LEDEKRLAHPFSL 590
Query: 751 AVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE- 809
AVFED +FWTD ++I ++ TG + + +NL+ P D+ ++H Q P N CE
Sbjct: 591 AVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHQLTQ-PRGVNWCER 648
Query: 810 ---NNGGCQGLCLLKP--NGHR---QCACPDNFILESDGKTCRHNCSAG 850
+NGGCQ LCL P N H CACPD +L D ++C A
Sbjct: 649 TTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAA 697
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 165/520 (31%), Positives = 229/520 (44%), Gaps = 103/520 (19%)
Query: 887 HCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELH--CVDYTCLNTQFKCKRDPAQGTGD 944
C +FQC + KC+ +CDG C D SDE C+ TC + F C G +
Sbjct: 5 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCG-----GRVN 59
Query: 945 HCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDE 1003
CI RCDG DC G DE C PK C+ +EF+C D KCIS VCD DCLD SDE
Sbjct: 60 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 119
Query: 1004 PADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCN 1063
A C TCGP +C++ CIP+ W CD D DC + DE P +C
Sbjct: 120 -ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ--------------RCR 164
Query: 1064 NYKCIPGSWHXXXXXXXXXXXXEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHS 1123
G + +P CS EF C +G+CI + C+G DC D S
Sbjct: 165 GLYVFQG-----------------DSSP--CSAFEFHCLSGECIHSSWRCDGGPDCKDKS 205
Query: 1124 DEINCNIS-CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC--TTKCK-PNMFTCA 1179
DE NC ++ C +EF+CS +CI CD + DC D SDE C T C+ PN F C
Sbjct: 206 DEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCH 264
Query: 1180 NHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGD 1239
+ +CI+L+ C+ DC D SD EP + +C N+C+ C +
Sbjct: 265 SGECITLDKVCNMARDCRDWSD-----------EPIK-ECGTNECLDNNGGCSHV----- 307
Query: 1240 NSDESHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQI 1299
C +K+ E C +G + + C+ ++C D TCSQ+
Sbjct: 308 ------CNDLKIGYEC--LCPDGFQLVAQRRCEDIDECQDPD-------------TCSQL 346
Query: 1300 CIEKKISNTERTFSCHCAEGYHMVHGKNKTSSCVANGKSALLLIA--HTTLKVLDPYASR 1357
C+ N E + C C EG+ + T +C A G A L H K+ +
Sbjct: 347 CV-----NLEGGYKCQCEEGFQL---DPHTKACKAVGSIAYLFFTNRHEVRKM-----TL 393
Query: 1358 AKSEISPLNLDATKIYSVDLLYEDRNNIMVYWVDRHAKVI 1397
+SE + L + + ++D +YW D ++I
Sbjct: 394 DRSEYTSLIPNLRNVVALDTEVASNR---IYWSDLSQRMI 430
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 136/294 (46%), Gaps = 38/294 (12%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKCILSSHTCNNINDCGDG 59
CI + CD C D SDE C C+ G F C N+CI C+ DC +G
Sbjct: 18 CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNG 77
Query: 60 SDEADC--STCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNP 117
SDE C TC D F C G CI + CD D DC D SDE CP+ C
Sbjct: 78 SDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPA------S 131
Query: 118 IHCNFTSACIEESYICDGQNDCFDMSDE--QNCDQI----KDVSPKMNCSGDKFLCRNGN 171
CN +S CI + + CD DC D SDE Q C + D SP CS +F C +G
Sbjct: 132 FQCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP---CSAFEFHCLSGE 187
Query: 172 CILSRWRXXXXXXXXXXXXXLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTY 231
CI S WR SDE NC +TC+ + FQC ++ CI S CD Y
Sbjct: 188 CIHSSWRCDGGPDCKD-----KSDEENCAV-ATCRPDE--FQC-SDGNCIHGSRQCDREY 238
Query: 232 DCTDRSDE----NSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
DC D SDE N T C +F+C+S G+CI + VC+ DC D SDE
Sbjct: 239 DCKDMSDEVGCVNVTLCEGPN----KFKCHS-GECITLDKVCNMARDCRDWSDE 287
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 141/325 (43%), Gaps = 70/325 (21%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEAD----CSTCGNDTFHCD--MGMCIHKA 84
C F+C + KCI C+ +C DGSDE+ TC + F C + CI +
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 65
Query: 85 LRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSD 144
RCD DC + SDE CP C++ + C+ CI ++CD DC D SD
Sbjct: 66 WRCDGQVDCDNGSDEQGCPPKTCSQ------DEFRCH-DGKCISRQFVCDSDRDCLDGSD 118
Query: 145 EQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRXXXXXXXXXXXXXLSSDEMNCDTEST 204
E +C P + C F C + CI W CD +
Sbjct: 119 EASC-------PVLTCGPASFQCNSSTCIPQLWA--------------------CDNDPD 151
Query: 205 CKANNN----------VFQCDNNK-----------TCISKSWVCDGTYDCTDRSDENSTY 243
C+ ++ VFQ D++ CI SW CDG DC D+SDE +
Sbjct: 152 CEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN-- 209
Query: 244 CAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEG--YFKCL 301
CA + C EF+C S G CI + CD DC D SDE C+NV C EG FKC
Sbjct: 210 CAVATCRPDEFQC-SDGNCIHGSRQCDREYDCKDMSDE---VGCVNVTLC-EGPNKFKCH 264
Query: 302 NGRCLLENYYCDGENDCGDNSDEPI 326
+G C+ + C+ DC D SDEPI
Sbjct: 265 SGECITLDKVCNMARDCRDWSDEPI 289
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 127/295 (43%), Gaps = 27/295 (9%)
Query: 846 NCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE-HDQCPQFHCLPGQFQCNN--TKCLH 902
C +F C+ KCI + W CD +C D SDE + C C G F C +C+
Sbjct: 5 RCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 63
Query: 903 PNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLG 962
CDG +C + SDE C TC +F+C CIS CD DC G
Sbjct: 64 QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCH-------DGKCISRQFVCDSDRDCLDG 116
Query: 963 EDEHDCMPKNCTANEFQCDVK-CISLALVCDKVFDCLDRSDE-PADCT--------SQTC 1012
DE C C FQC+ CI CD DC D SDE P C S C
Sbjct: 117 SDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 176
Query: 1013 GPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSW 1072
C +G CI +W+CDG DC ++ DE +CA + TC P F+C++ CI GS
Sbjct: 177 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDE-ENCA---VATCRPDEFQCSDGNCIHGSR 232
Query: 1073 HXXXXXXXXXXXXEKNCTPRNCSES--EFRCANGKCIRPHYVCNGENDCADHSDE 1125
E C E +F+C +G+CI VCN DC D SDE
Sbjct: 233 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 287
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 95/227 (41%), Gaps = 19/227 (8%)
Query: 823 NGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQ 882
NG + CP + + + C + QF+C+ DC D SDE
Sbjct: 76 NGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDR-------------DCLDGSDEA-S 121
Query: 883 CPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDEL--HCVD-YTCLNTQFKCKRDPA 939
CP C P FQCN++ C+ CD +C D SDE C Y C
Sbjct: 122 CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF 181
Query: 940 QGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQC-DVKCISLALVCDKVFDCL 998
CI RCDG PDC DE +C C +EFQC D CI + CD+ +DC
Sbjct: 182 HCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCK 241
Query: 999 DRSDEPADCTSQTC-GPDYIRCDTGRCIPKTWQCDGDVDCPNREDEP 1044
D SDE C GP+ +C +G CI C+ DC + DEP
Sbjct: 242 DMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 288
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTI 906
CSA +F C + +CI W+CD DC DKSDE + C C P +FQC++ C+H +
Sbjct: 176 CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEEN-CAVATCRPDEFQCSDGNCIHGSRQ 233
Query: 907 CDGVNNCGDMSDELHCVDYTCLN--TQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGED 964
CD +C DMSDE+ CV+ T +FKC CI+L C+ DC D
Sbjct: 234 CDREYDCKDMSDEVGCVNVTLCEGPNKFKCH-------SGECITLDKVCNMARDCRDWSD 286
Query: 965 E--HDCMPKNCTANEFQCDVKCISLAL 989
E +C C N C C L +
Sbjct: 287 EPIKECGTNECLDNNGGCSHVCNDLKI 313
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 1208 AGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESH--CPSIKLCSEANFKCAN--GN 1263
G CE N F+C++ KCI +CDG C D SDES C S+ C +F C
Sbjct: 2 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT-CKSGDFSCGGRVNR 60
Query: 1264 CIKKELECDQYNDCGDNSDEEGCDSPLC---KFRTCSQICIEKKI 1305
CI + CD DC + SDE+GC C +FR CI ++
Sbjct: 61 CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQF 105
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 249/709 (35%), Positives = 355/709 (50%), Gaps = 80/709 (11%)
Query: 206 KANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNS-TGQCIP 264
+ N FQC + K CIS WVCDG+ +C D SDE+ C C +F C +CIP
Sbjct: 23 RCERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 81
Query: 265 ITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
W CDG DC + SDE Q C +TC + F+C +G+C+ + CD + DC D SDE
Sbjct: 82 QFWRCDGQVDCDNGSDE---QGC-PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 137
Query: 325 ---PIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPS------CPKTDCDNSTHF 375
P+++ ++C + C+ + + CD + DC D SDE P + D + F
Sbjct: 138 ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAF 197
Query: 376 E--CQNGNCIPSVLLCNGVNDCDDNSDEDM--------------------------NHAE 407
E C +G CI S C+G DC D SDE+ +
Sbjct: 198 EFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYD 257
Query: 408 CRSLKD--------LCKHPSHFLCSNGLCINETLTCNDINDCGDNSDE--FSCFVNECNV 457
C+ + D LC+ P+ F C +G CI CN DC D SDE C NEC
Sbjct: 258 CKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD 317
Query: 458 SHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRNTLGSYS 516
++GG C+H C DLKIGY+C C G+Q+ + + C D +EC D CS C N G Y
Sbjct: 318 NNGG--CSHVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVNLEGGYK 373
Query: 517 CSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVT-QAGVMTIRIHNQTNAVGLDFD 575
C C G+ L CKA + L FTN++ +R++T T I N N V LD +
Sbjct: 374 CQCEEGFQLDPHTKACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 432
Query: 576 WVDNCLYWSDVTMH---GSSIRRSCNNSQPELLFP--ATSPDGLTVDWVGRNLYWCDKGL 630
N +YWSD++ + + R+ S + + +PDGL VDW+ N+YW D L
Sbjct: 433 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 492
Query: 631 DTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVI 690
T+ VA G RK L + +PR I ++P +G+MYWTDWG A I K ++G + +
Sbjct: 493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552
Query: 691 ISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFAL 750
+++N+ WPN +T+ + L+W D+ I+ D+NG N K I ++ L H F+L
Sbjct: 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI----LEDEKRLAHPFSL 608
Query: 751 AVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE- 809
AVFED +FWTD ++I ++ TG + + +NL+ P D+ ++H Q P N CE
Sbjct: 609 AVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQ-PRGVNWCER 666
Query: 810 ---NNGGCQGLCLLKP--NGHR---QCACPDNFILESDGKTCRHNCSAG 850
+NGGCQ LCL P N H CACPD +L D ++C A
Sbjct: 667 TTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAA 715
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 165/520 (31%), Positives = 229/520 (44%), Gaps = 103/520 (19%)
Query: 887 HCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELH--CVDYTCLNTQFKCKRDPAQGTGD 944
C +FQC + KC+ +CDG C D SDE C+ TC + F C G +
Sbjct: 23 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCG-----GRVN 77
Query: 945 HCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDE 1003
CI RCDG DC G DE C PK C+ +EF+C D KCIS VCD DCLD SDE
Sbjct: 78 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 137
Query: 1004 PADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCN 1063
A C TCGP +C++ CIP+ W CD D DC + DE P +C
Sbjct: 138 -ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ--------------RCR 182
Query: 1064 NYKCIPGSWHXXXXXXXXXXXXEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHS 1123
G + +P CS EF C +G+CI + C+G DC D S
Sbjct: 183 GLYVFQG-----------------DSSP--CSAFEFHCLSGECIHSSWRCDGGPDCKDKS 223
Query: 1124 DEINCNIS-CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC--TTKCK-PNMFTCA 1179
DE NC ++ C +EF+CS +CI CD + DC D SDE C T C+ PN F C
Sbjct: 224 DEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCH 282
Query: 1180 NHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGD 1239
+ +CI+L+ C+ DC D SD EP + +C N+C+ C +
Sbjct: 283 SGECITLDKVCNMARDCRDWSD-----------EPIK-ECGTNECLDNNGGCSHV----- 325
Query: 1240 NSDESHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQI 1299
C +K+ E C +G + + C+ ++C D TCSQ+
Sbjct: 326 ------CNDLKIGYEC--LCPDGFQLVAQRRCEDIDECQDPD-------------TCSQL 364
Query: 1300 CIEKKISNTERTFSCHCAEGYHMVHGKNKTSSCVANGKSALLLIA--HTTLKVLDPYASR 1357
C+ N E + C C EG+ + T +C A G A L H K+ +
Sbjct: 365 CV-----NLEGGYKCQCEEGFQL---DPHTKACKAVGSIAYLFFTNRHEVRKM-----TL 411
Query: 1358 AKSEISPLNLDATKIYSVDLLYEDRNNIMVYWVDRHAKVI 1397
+SE + L + + ++D +YW D ++I
Sbjct: 412 DRSEYTSLIPNLRNVVALDTEVASNR---IYWSDLSQRMI 448
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 136/294 (46%), Gaps = 38/294 (12%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKCILSSHTCNNINDCGDG 59
CI + CD C D SDE C C+ G F C N+CI C+ DC +G
Sbjct: 36 CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNG 95
Query: 60 SDEADC--STCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNP 117
SDE C TC D F C G CI + CD D DC D SDE CP+ C
Sbjct: 96 SDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPA------S 149
Query: 118 IHCNFTSACIEESYICDGQNDCFDMSDE--QNCDQI----KDVSPKMNCSGDKFLCRNGN 171
CN +S CI + + CD DC D SDE Q C + D SP CS +F C +G
Sbjct: 150 FQCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP---CSAFEFHCLSGE 205
Query: 172 CILSRWRXXXXXXXXXXXXXLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTY 231
CI S WR SDE NC +TC+ + FQC ++ CI S CD Y
Sbjct: 206 CIHSSWRCDGGPDCKD-----KSDEENCAV-ATCRPDE--FQC-SDGNCIHGSRQCDREY 256
Query: 232 DCTDRSDE----NSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
DC D SDE N T C +F+C+S G+CI + VC+ DC D SDE
Sbjct: 257 DCKDMSDEVGCVNVTLCEGPN----KFKCHS-GECITLDKVCNMARDCRDWSDE 305
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 141/325 (43%), Gaps = 70/325 (21%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEAD----CSTCGNDTFHCD--MGMCIHKA 84
C F+C + KCI C+ +C DGSDE+ TC + F C + CI +
Sbjct: 24 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 83
Query: 85 LRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSD 144
RCD DC + SDE CP C++ + C+ CI ++CD DC D SD
Sbjct: 84 WRCDGQVDCDNGSDEQGCPPKTCSQ------DEFRCH-DGKCISRQFVCDSDRDCLDGSD 136
Query: 145 EQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRXXXXXXXXXXXXXLSSDEMNCDTEST 204
E +C P + C F C + CI W CD +
Sbjct: 137 EASC-------PVLTCGPASFQCNSSTCIPQLW--------------------ACDNDPD 169
Query: 205 CKANNN----------VFQCDNNK-----------TCISKSWVCDGTYDCTDRSDENSTY 243
C+ ++ VFQ D++ CI SW CDG DC D+SDE +
Sbjct: 170 CEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN-- 227
Query: 244 CAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEG--YFKCL 301
CA + C EF+C S G CI + CD DC D SDE C+NV C EG FKC
Sbjct: 228 CAVATCRPDEFQC-SDGNCIHGSRQCDREYDCKDMSDE---VGCVNVTLC-EGPNKFKCH 282
Query: 302 NGRCLLENYYCDGENDCGDNSDEPI 326
+G C+ + C+ DC D SDEPI
Sbjct: 283 SGECITLDKVCNMARDCRDWSDEPI 307
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 128/301 (42%), Gaps = 27/301 (8%)
Query: 840 GKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE-HDQCPQFHCLPGQFQCNN- 897
G C +F C+ KCI + W CD +C D SDE + C C G F C
Sbjct: 17 GTAVGDRCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGR 75
Query: 898 -TKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGH 956
+C+ CDG +C + SDE C TC +F+C CIS CD
Sbjct: 76 VNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCH-------DGKCISRQFVCDSD 128
Query: 957 PDCPLGEDEHDCMPKNCTANEFQCDVK-CISLALVCDKVFDCLDRSDE-PADCT------ 1008
DC G DE C C FQC+ CI CD DC D SDE P C
Sbjct: 129 RDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQ 188
Query: 1009 --SQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYK 1066
S C C +G CI +W+CDG DC ++ DE +CA + TC P F+C++
Sbjct: 189 GDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE-ENCA---VATCRPDEFQCSDGN 244
Query: 1067 CIPGSWHXXXXXXXXXXXXEKNCTPRNCSES--EFRCANGKCIRPHYVCNGENDCADHSD 1124
CI GS E C E +F+C +G+CI VCN DC D SD
Sbjct: 245 CIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSD 304
Query: 1125 E 1125
E
Sbjct: 305 E 305
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 95/227 (41%), Gaps = 19/227 (8%)
Query: 823 NGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQ 882
NG + CP + + + C + QF+C+ DC D SDE
Sbjct: 94 NGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDR-------------DCLDGSDEA-S 139
Query: 883 CPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDEL--HCVD-YTCLNTQFKCKRDPA 939
CP C P FQCN++ C+ CD +C D SDE C Y C
Sbjct: 140 CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF 199
Query: 940 QGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQC-DVKCISLALVCDKVFDCL 998
CI RCDG PDC DE +C C +EFQC D CI + CD+ +DC
Sbjct: 200 HCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCK 259
Query: 999 DRSDEPADCTSQTC-GPDYIRCDTGRCIPKTWQCDGDVDCPNREDEP 1044
D SDE C GP+ +C +G CI C+ DC + DEP
Sbjct: 260 DMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 306
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTI 906
CSA +F C + +CI W+CD DC DKSDE + C C P +FQC++ C+H +
Sbjct: 194 CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEEN-CAVATCRPDEFQCSDGNCIHGSRQ 251
Query: 907 CDGVNNCGDMSDELHCVDYTCLN--TQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGED 964
CD +C DMSDE+ CV+ T +FKC CI+L C+ DC D
Sbjct: 252 CDREYDCKDMSDEVGCVNVTLCEGPNKFKCH-------SGECITLDKVCNMARDCRDWSD 304
Query: 965 E--HDCMPKNCTANEFQCDVKCISLAL 989
E +C C N C C L +
Sbjct: 305 EPIKECGTNECLDNNGGCSHVCNDLKI 331
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 1208 AGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESH--CPSIKLCSEANFKCAN--GN 1263
G CE N F+C++ KCI +CDG C D SDES C S+ C +F C
Sbjct: 20 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT-CKSGDFSCGGRVNR 78
Query: 1264 CIKKELECDQYNDCGDNSDEEGCDSPLC---KFRTCSQICIEKKI 1305
CI + CD DC + SDE+GC C +FR CI ++
Sbjct: 79 CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQF 123
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 287 bits (735), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 163/385 (42%), Positives = 219/385 (56%), Gaps = 19/385 (4%)
Query: 455 CNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRP-CSHYCRNTLG 513
CNV++GG CA +C ++ +C C GY++ ED C D NEC + CS C N+ G
Sbjct: 6 CNVNNGG--CAQKCQMIRGAVQCTCHTGYRL-TEDGRTCQDVNECAEEGYCSQGCTNSEG 62
Query: 514 SYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVT-QAGVMTIRIHNQTNAVGL 572
++ C C GY L D+ CKA P LLF N+ IR+V T+ ++N NA+ L
Sbjct: 63 AFQCWCEAGYELRPDRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIAL 121
Query: 573 DFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPA--TSPDGLTVDWVGRNLYWCDKGL 630
DF ++WSDVT+ +R + N S E + SP GL VDWV LYW D G
Sbjct: 122 DFHHRRELVFWSDVTL-DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180
Query: 631 DTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVI 690
IEVA LDG RKVL+ + L++PR IAL+P G +YWTDWG I + MDGS ++I
Sbjct: 181 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 240
Query: 691 ISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFAL 750
+L WPN LTI Y ++W DA I ++L+G + K ++S+ L H FA+
Sbjct: 241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------GLPHPFAI 294
Query: 751 AVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCEN 810
VFED L+WTDW KSI +K+TGKN +++N +H PMD+ HP RQ K+ +N
Sbjct: 295 TVFEDSLYWTDWHTKSINSANKFTGKN-QEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDN 353
Query: 811 NGGCQGLCLLKPNGHR-QCACPDNF 834
NGGC LCL P+G CACP F
Sbjct: 354 NGGCTHLCL--PSGQNYTCACPTGF 376
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 1296 CSQICIEKKISNTERTFSCHCAEGYHMVHGKNKTSSCVANGKSALLLIAHTT-LKVLDPY 1354
CSQ C +N+E F C C GY + + SC A G +LL A+ ++ + P+
Sbjct: 53 CSQGC-----TNSEGAFQCWCEAGYEL---RPDRRSCKALGPEPVLLFANRIDIRQVLPH 104
Query: 1355 ASRAKSEISPLNLDATKIYSVDLLYEDRNNIMVYWVDRHAKVIKMASISSGNVTRV 1410
+SE + L + ++D + +V+W D I A+++ NV V
Sbjct: 105 ----RSEYTLLLNNLENAIALDFHHRRE---LVFWSDVTLDRILRANLNGSNVEEV 153
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 269 bits (687), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 167/447 (37%), Positives = 239/447 (53%), Gaps = 29/447 (6%)
Query: 415 CKHPSHFLCSNGLCINETLTCNDINDCGDNSDE--FSCFVNECNVSHGGQLCAHECIDLK 472
C+ P+ F C +G CI CN DC D SDE C NEC ++GG C+H C DLK
Sbjct: 1 CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG--CSHVCNDLK 58
Query: 473 IGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRNTLGSYSCSCAPGYALLSDKHG 531
IGY+C C G+Q+ + + C D +EC D CS C N G Y C C G+ L
Sbjct: 59 IGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 116
Query: 532 CKATSDVPPNLLFTNKYYIREVT-QAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMH- 589
CKA + L FTN++ +R++T T I N N V LD + N +YWSD++
Sbjct: 117 CKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 175
Query: 590 --GSSIRRSCNNSQPELLFP--ATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKV 645
+ + R+ S + + +PDGL VDW+ N+YW D L T+ VA G RK
Sbjct: 176 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 235
Query: 646 LINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISY 705
L + +PR I ++P +G+MYWTDWG A I K ++G + ++++N+ WPN +T+
Sbjct: 236 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 295
Query: 706 ETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMK 765
+ L+W D+ I+ D+NG N K I ++ L H F+LAVFED +FWTD +
Sbjct: 296 LSGRLYWVDSKLHSISSIDVNGGNRKTI----LEDEKRLAHPFSLAVFEDKVFWTDIINE 351
Query: 766 SIERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE----NNGGCQGLCLLK 821
+I ++ TG + + +NL+ P D+ ++H Q P N CE +NGGCQ LCL
Sbjct: 352 AIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPA 409
Query: 822 P--NGHR---QCACPDNFILESDGKTC 843
P N H CACPD +L D ++C
Sbjct: 410 PQINPHSPKFTCACPDGMLLARDMRSC 436
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 56/227 (24%)
Query: 1173 PNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCD 1232
PN F C + +CI+L+ C+ DC D SD EP + +C N+C+ C
Sbjct: 4 PNKFKCHSGECITLDKVCNMARDCRDWSD-----------EPIK-ECGTNECLDNNGGCS 51
Query: 1233 GIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCK 1292
+ C +K+ E C +G + + C+ ++C D
Sbjct: 52 HV-----------CNDLKIGYEC--LCPDGFQLVAQRRCEDIDECQDPD----------- 87
Query: 1293 FRTCSQICIEKKISNTERTFSCHCAEGYHMVHGKNKTSSCVANGKSALLLIA--HTTLKV 1350
TCSQ+C+ N E + C C EG+ + T +C A G A L H K+
Sbjct: 88 --TCSQLCV-----NLEGGYKCQCEEGFQL---DPHTKACKAVGSIAYLFFTNRHEVRKM 137
Query: 1351 LDPYASRAKSEISPLNLDATKIYSVDLLYEDRNNIMVYWVDRHAKVI 1397
+ +SE + L + + ++D E +N +YW D ++I
Sbjct: 138 -----TLDRSEYTSLIPNLRNVVALDT--EVASN-RIYWSDLSQRMI 176
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1098 EFRCANGKCIRPHYVCNGENDCADHSDE 1125
+F+C +G+CI VCN DC D SDE
Sbjct: 6 KFKCHSGECITLDKVCNMARDCRDWSDE 33
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 298 FKCLNGRCLLENYYCDGENDCGDNSDEPI 326
FKC +G C+ + C+ DC D SDEPI
Sbjct: 7 FKCHSGECITLDKVCNMARDCRDWSDEPI 35
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 261 bits (667), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/344 (42%), Positives = 195/344 (56%), Gaps = 16/344 (4%)
Query: 496 TNECLDRP-CSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVT 554
NEC + CS C N+ G++ C C GY L D+ CKA P LLF N+ IR+V
Sbjct: 1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPVLLFANRIDIRQVL 59
Query: 555 -QAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPA--TSP 611
T+ ++N NA+ LDF ++WSDVT+ +R + N S E + SP
Sbjct: 60 PHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTL-DRILRANLNGSNVEEVVSTGLESP 118
Query: 612 DGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDW 671
GL VDWV LYW D G IEVA LDG RKVL+ + L++PR IAL+P G +YWTDW
Sbjct: 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178
Query: 672 GQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIK 731
G I + MDGS ++I +L WPN LTI Y ++W DA I ++L+G + K
Sbjct: 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238
Query: 732 IIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMD 791
++S+ L H FA+ VFED L+WTDW KSI +K+TGKN +++N +H PMD
Sbjct: 239 AVISQ------GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKN-QEIIRNKLHFPMD 291
Query: 792 LRVYHPYRQTPLKDNPCENNGGCQGLCLLKPNGHR-QCACPDNF 834
+ HP RQ K+ +NNGGC LCL P+G CACP F
Sbjct: 292 IHTLHPQRQPAGKNRCGDNNGGCTHLCL--PSGQNYTCACPTGF 333
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 1296 CSQICIEKKISNTERTFSCHCAEGYHMVHGKNKTSSCVANGKSALLLIAHTT-LKVLDPY 1354
CSQ C +N+E F C C GY + + SC A G +LL A+ ++ + P+
Sbjct: 10 CSQGC-----TNSEGAFQCWCEAGYEL---RPDRRSCKALGPEPVLLFANRIDIRQVLPH 61
Query: 1355 ASRAKSEISPLNLDATKIYSVDLLYEDRNNIMVYWVDRHAKVIKMASISSGNVTRV 1410
+SE + L + ++D + +V+W D I A+++ NV V
Sbjct: 62 ----RSEYTLLLNNLENAIALDFHHRRE---LVFWSDVTLDRILRANLNGSNVEEV 110
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/407 (37%), Positives = 220/407 (54%), Gaps = 27/407 (6%)
Query: 453 NECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRNT 511
NEC ++GG C+H C DLKIGY+C C G+Q+ + + C D +EC D CS C N
Sbjct: 1 NECLDNNGG--CSHVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVNL 56
Query: 512 LGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVT-QAGVMTIRIHNQTNAV 570
G Y C C G+ L CKA + L FTN++ +R++T T I N N V
Sbjct: 57 EGGYKCQCEEGFQLDPHTKACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV 115
Query: 571 GLDFDWVDNCLYWSDVTMH---GSSIRRSCNNSQPELLFP--ATSPDGLTVDWVGRNLYW 625
LD + N +YWSD++ + + R+ S + + +PDGL VDW+ N+YW
Sbjct: 116 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW 175
Query: 626 CDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGS 685
D L T+ VA G RK L + +PR I ++P +G+MYWTDWG A I K ++G
Sbjct: 176 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235
Query: 686 NPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLH 745
+ ++++N+ WPN +T+ + L+W D+ I+ D+NG N K I ++ L
Sbjct: 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI----LEDEKRLA 291
Query: 746 HVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKD 805
H F+LAVFED +FWTD ++I ++ TG + + +NL+ P D+ ++H Q P
Sbjct: 292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQ-PRGV 349
Query: 806 NPCE----NNGGCQGLCLLKP--NGHR---QCACPDNFILESDGKTC 843
N CE +NGGCQ LCL P N H CACPD +L D ++C
Sbjct: 350 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 1295 TCSQICIEKKISNTERTFSCHCAEGYHMVHGKNKTSSCVANGKSALLLIA--HTTLKVLD 1352
TCSQ+C+ N E + C C EG+ + T +C A G A L H K+
Sbjct: 48 TCSQLCV-----NLEGGYKCQCEEGFQL---DPHTKACKAVGSIAYLFFTNRHEVRKM-- 97
Query: 1353 PYASRAKSEISPLNLDATKIYSVDLLYEDRNNIMVYWVDRHAKVI 1397
+ +SE + L + + ++D E +N +YW D ++I
Sbjct: 98 ---TLDRSEYTSLIPNLRNVVALDT--EVASN-RIYWSDLSQRMI 136
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 198/350 (56%), Gaps = 25/350 (7%)
Query: 504 CSHYCRNTLGS--YSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVTQAGV--- 558
CSH C + Y C+C G LL + CK LL + +R ++
Sbjct: 282 CSHLCLMSPVKPFYQCACPTGVKLLENGKTCK--DGATELLLLARRTDLRRISLDTPDFT 339
Query: 559 -MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSC---NNSQPELLFPATSPDGL 614
+ +++ + +A+ +D+D V+ +YW+D + +IRRS + SQ + PDG+
Sbjct: 340 DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR--AIRRSFIDGSGSQFVVTAQIAHPDGI 397
Query: 615 TVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQN 674
VDWV RNLYW D G D IEV +L+G RK+LI++ L+EPR I L+P GYMYWTDWG+
Sbjct: 398 AVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI 457
Query: 675 AHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIV 734
I +A +DGS+ V+++ +L WPN L + Y+ +++WGDA D I V + +G +++V
Sbjct: 458 PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 517
Query: 735 SRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRV 794
++ H+F + D+++WTDW+ +SIER K + + V+ + + M L+
Sbjct: 518 EDKIP------HIFGFTLLGDYVYWTDWQRRSIERVHKRSAER--EVIIDQLPDLMGLKA 569
Query: 795 YHPYRQTPLKDNPC-ENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
+ +R + NPC E NGGC LCL +P G R CACP F L SD KTC
Sbjct: 570 TNVHRV--IGSNPCAEENGGCSHLCLYRPQGLR-CACPIGFELISDMKTC 616
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 184/327 (56%), Gaps = 19/327 (5%)
Query: 540 PNLLFTNKYYIREVTQAGV---MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRS 596
P LL+ N+ +R V TI + +A +DF + +YWSDV+ +I+R+
Sbjct: 10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE--AIKRT 67
Query: 597 CNNS----QPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQ 652
N Q ++ SPDGL DW+G LYW D + IEV+ LDG RKVL + L
Sbjct: 68 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 127
Query: 653 EPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFW 712
+PR IAL+P+ G+MYWTDWG+ I +A MDGS+ +II+ + WPN LT+ YE +L+W
Sbjct: 128 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 187
Query: 713 GDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDK 772
DA ++I S+L+G N + +V +L H FAL +FED L+WTDW SI C+K
Sbjct: 188 ADAKLNFIHKSNLDGTNRQAVVKG------SLPHPFALTLFEDILYWTDWSTHSILACNK 241
Query: 773 YTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE-NNGGCQGLCLLKP-NGHRQCAC 830
YTG+ + + + PMD+ + RQ P NPC +NGGC LCL+ P QCAC
Sbjct: 242 YTGEGLREIHSD-IFSPMDIHAFSQQRQ-PNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 299
Query: 831 PDNFILESDGKTCRHNCSAGQFLCEKT 857
P L +GKTC+ + L +T
Sbjct: 300 PTGVKLLENGKTCKDGATELLLLARRT 326
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 198/350 (56%), Gaps = 25/350 (7%)
Query: 504 CSHYCRNTLGS--YSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVTQAGV--- 558
CSH C + Y C+C G LL + CK LL + +R ++
Sbjct: 274 CSHLCLMSPVKPFYQCACPTGVKLLENGKTCK--DGATELLLLARRTDLRRISLDTPDFT 331
Query: 559 -MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSC---NNSQPELLFPATSPDGL 614
+ +++ + +A+ +D+D V+ +YW+D + +IRRS + SQ + PDG+
Sbjct: 332 DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR--AIRRSFIDGSGSQFVVTAQIAHPDGI 389
Query: 615 TVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQN 674
VDWV RNLYW D G D IEV +L+G RK+LI++ L+EPR I L+P GYMYWTDWG+
Sbjct: 390 AVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI 449
Query: 675 AHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIV 734
I +A +DGS+ V+++ +L WPN L + Y+ +++WGDA D I V + +G +++V
Sbjct: 450 PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 509
Query: 735 SRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRV 794
++ H+F + D+++WTDW+ +SIER K + + V+ + + M L+
Sbjct: 510 EDKIP------HIFGFTLLGDYVYWTDWQRRSIERVHKRSAER--EVIIDQLPDLMGLKA 561
Query: 795 YHPYRQTPLKDNPC-ENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
+ +R + NPC E NGGC LCL +P G R CACP F L SD KTC
Sbjct: 562 TNVHRV--IGSNPCAEENGGCSHLCLYRPQGLR-CACPIGFELISDMKTC 608
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 184/327 (56%), Gaps = 19/327 (5%)
Query: 540 PNLLFTNKYYIREVTQAGV---MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRS 596
P LL+ N+ +R V TI + +A +DF + +YWSDV+ +I+R+
Sbjct: 2 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE--AIKRT 59
Query: 597 CNNS----QPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQ 652
N Q ++ SPDGL DW+G LYW D + IEV+ LDG RKVL + L
Sbjct: 60 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 119
Query: 653 EPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFW 712
+PR IAL+P+ G+MYWTDWG+ I +A MDGS+ +II+ + WPN LT+ YE +L+W
Sbjct: 120 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 179
Query: 713 GDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDK 772
DA ++I S+L+G N + +V +L H FAL +FED L+WTDW SI C+K
Sbjct: 180 ADAKLNFIHKSNLDGTNRQAVVKG------SLPHPFALTLFEDILYWTDWSTHSILACNK 233
Query: 773 YTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE-NNGGCQGLCLLKP-NGHRQCAC 830
YTG+ + + + PMD+ + RQ P NPC +NGGC LCL+ P QCAC
Sbjct: 234 YTGEGLREIHSD-IFSPMDIHAFSQQRQ-PNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 291
Query: 831 PDNFILESDGKTCRHNCSAGQFLCEKT 857
P L +GKTC+ + L +T
Sbjct: 292 PTGVKLLENGKTCKDGATELLLLARRT 318
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 229 bits (584), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 180/314 (57%), Gaps = 19/314 (6%)
Query: 540 PNLLFTNKYYIREVTQAGV---MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRS 596
P LL+ N+ +R V TI + +A +DF + +YWSDV+ +I+R+
Sbjct: 5 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE--AIKRT 62
Query: 597 CNNS----QPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQ 652
N Q ++ SPDGL DW+G LYW D + IEV+ LDG RKVL + L
Sbjct: 63 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 653 EPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFW 712
+PR IAL+P+ G+MYWTDWG+ I +A MDGS+ +II+ + WPN LT+ YE +L+W
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 182
Query: 713 GDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDK 772
DA ++I S+L+G N + +V +L H FAL +FED L+WTDW SI C+K
Sbjct: 183 ADAKLNFIHKSNLDGTNRQAVVKG------SLPHPFALTLFEDILYWTDWSTHSILACNK 236
Query: 773 YTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE-NNGGCQGLCLLKP-NGHRQCAC 830
YTG+ + + + PMD+ + RQ P NPC +NGGC LCL+ P QCAC
Sbjct: 237 YTGEGLREIHSD-IFSPMDIHAFSQQRQ-PNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 294
Query: 831 PDNFILESDGKTCR 844
P L +GKTC+
Sbjct: 295 PTGVKLLENGKTCK 308
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 182/325 (56%), Gaps = 19/325 (5%)
Query: 540 PNLLFTNKYYIREVTQAGV---MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRS 596
P LL+ N+ +R V TI + +A +DF + +YWSDV+ +I+R+
Sbjct: 2 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE--AIKRT 59
Query: 597 CNNS----QPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQ 652
N Q ++ SPDGL DW+G LYW D + IEV+ LDG RKVL + L
Sbjct: 60 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 119
Query: 653 EPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFW 712
+PR IAL+P+ G+MYWTDWG+ I +A MDGS+ +II+ + WPN LT+ YE +L+W
Sbjct: 120 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 179
Query: 713 GDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDK 772
DA ++I S+L+G N + +V +L H FAL +FED L+WTDW SI C+K
Sbjct: 180 ADAKLNFIHKSNLDGTNRQAVVKG------SLPHPFALTLFEDILYWTDWSTHSILACNK 233
Query: 773 YTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE-NNGGCQGLCLLKP-NGHRQCAC 830
YTG+ + + + PMD+ + RQ P NPC +NGGC LCL+ P QCAC
Sbjct: 234 YTGEGLREIHSD-IFSPMDIHAFSQQRQ-PNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 291
Query: 831 PDNFILESDGKTCRHNCSAGQFLCE 855
P L +GKTC+ + L
Sbjct: 292 PTGVKLLENGKTCKDGATELLLLAR 316
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 214 bits (544), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 176/308 (57%), Gaps = 18/308 (5%)
Query: 542 LLFTNKYYIREV---TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCN 598
LLF+ + IR + T + I + A LDFD DN +YW+D+++ S R N
Sbjct: 7 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS-RAFMN 65
Query: 599 NSQPE--LLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRG 656
S E + F P+G+ VDW+G+NLYW D G + IEV+KLDG+ R+VL+ K L PR
Sbjct: 66 GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRA 125
Query: 657 IALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAH 716
+AL+PA G+MYWT+WG I +A MDGS ++ N+ N LTI Y L+W D
Sbjct: 126 LALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLD 184
Query: 717 EDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGK 776
+ I S++ G N ++I +L H F L ++D+++WTDW +SIER +K +G+
Sbjct: 185 TNLIESSNMLGLNREVIAD-------DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 237
Query: 777 NCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPC-ENNGGCQGLCLLKPNGHRQCACPDNFI 835
N T +++ + MD+ V+H RQ+ N C +NG C LCL P G C CP ++
Sbjct: 238 NRT-IIQGHLDYVMDILVFHSSRQSGW--NECASSNGHCSHLCLAVPVGGFVCGCPAHYS 294
Query: 836 LESDGKTC 843
L +D +TC
Sbjct: 295 LNADNRTC 302
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 174/356 (48%), Gaps = 28/356 (7%)
Query: 504 CSHYCRNT-LGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVT----QAGV 558
CSH C +G + C C Y+L +D C A + LLF+ K I + Q+
Sbjct: 273 CSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF---LLFSQKSAINRMVIDEQQSPD 329
Query: 559 MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPATS-------- 610
+ + IH+ N +D+D +D LYW D + IR++ + +S
Sbjct: 330 IILPIHSLRNVRAIDYDPLDKQLYWIDSRQN--MIRKAQEDGSQGFTVVVSSVPSQNLEI 387
Query: 611 -PDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWT 669
P L++D R +YW + + I V +LDGR V++ PR I +NP GYMY+T
Sbjct: 388 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFT 447
Query: 670 DWGQNA-HIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGE 728
+ + + I +A +DG+ +V+ LS P AL + +LFW D+ I SDL+G
Sbjct: 448 NLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 507
Query: 729 NIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHK 788
N +I++ N+ L VFE+ L+W D + + IE+ D TG+ + V+ + +
Sbjct: 508 N-RIVLEDS-----NILQPVGLTVFENWLYWIDKQQQMIEKID-MTGREGRTKVQARIAQ 560
Query: 789 PMDLRVYHPYRQTPLKDNPC-ENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
D+ + +PC ++NGGC +CL+K +G +C+CP + +L D +C
Sbjct: 561 LSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 616
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 176/308 (57%), Gaps = 18/308 (5%)
Query: 542 LLFTNKYYIREV---TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCN 598
LLF+ + IR + T + I + A LDFD DN +YW+D+++ S R N
Sbjct: 9 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS-RAFMN 67
Query: 599 NSQPE--LLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRG 656
S E + F P+G+ VDW+G+NLYW D G + IEV+KLDG+ R+VL+ K L PR
Sbjct: 68 GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRA 127
Query: 657 IALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAH 716
+AL+PA G+MYWT+WG I +A MDGS ++ N+ N LTI Y L+W D
Sbjct: 128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLD 186
Query: 717 EDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGK 776
+ I S++ G N ++I +L H F L ++D+++WTDW +SIER +K +G+
Sbjct: 187 TNLIESSNMLGLNREVIAD-------DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239
Query: 777 NCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPC-ENNGGCQGLCLLKPNGHRQCACPDNFI 835
N T +++ + MD+ V+H RQ+ N C +NG C LCL P G C CP ++
Sbjct: 240 NRT-IIQGHLDYVMDILVFHSSRQSGW--NECASSNGHCSHLCLAVPVGGFVCGCPAHYS 296
Query: 836 LESDGKTC 843
L +D +TC
Sbjct: 297 LNADNRTC 304
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 174/356 (48%), Gaps = 28/356 (7%)
Query: 504 CSHYCRNT-LGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVT----QAGV 558
CSH C +G + C C Y+L +D C A + LLF+ K I + Q+
Sbjct: 275 CSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF---LLFSQKSAINRMVIDEQQSPD 331
Query: 559 MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPATS-------- 610
+ + IH+ N +D+D +D LYW D + IR++ + +S
Sbjct: 332 IILPIHSLRNVRAIDYDPLDKQLYWIDSRQN--MIRKAQEDGSQGFTVVVSSVPSQNLEI 389
Query: 611 -PDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWT 669
P L++D R +YW + + I V +LDGR V++ PR + +NP GYMY+T
Sbjct: 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFT 449
Query: 670 DWGQNA-HIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGE 728
+ + + I +A +DG+ +V+ LS P AL + +LFW D+ I SDL+G
Sbjct: 450 NLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509
Query: 729 NIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHK 788
N +I++ N+ L VFE+ L+W D + + IE+ D TG+ + V+ + +
Sbjct: 510 N-RIVLEDS-----NILQPVGLTVFENWLYWIDKQQQMIEKID-MTGREGRTKVQARIAQ 562
Query: 789 PMDLRVYHPYRQTPLKDNPC-ENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
D+ + +PC ++NGGC +CL+K +G +C+CP + +L D +C
Sbjct: 563 LSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 618
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 176/308 (57%), Gaps = 18/308 (5%)
Query: 542 LLFTNKYYIREV---TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCN 598
LLF+ + IR + T + I + A LDFD DN +YW+D+++ S R N
Sbjct: 14 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS-RAFMN 72
Query: 599 NSQPE--LLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRG 656
S E + F P+G+ VDW+G+NLYW D G + IEV+KLDG+ R+VL+ K L PR
Sbjct: 73 GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRA 132
Query: 657 IALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAH 716
+AL+PA G+MYWT+WG I +A MDGS ++ N+ N LTI Y L+W D
Sbjct: 133 LALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLD 191
Query: 717 EDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGK 776
+ I S++ G N ++I +L H F L ++D+++WTDW +SIER +K +G+
Sbjct: 192 TNLIESSNMLGLNREVIAD-------DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 244
Query: 777 NCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPC-ENNGGCQGLCLLKPNGHRQCACPDNFI 835
N T +++ + MD+ V+H RQ+ N C +NG C LCL P G C CP ++
Sbjct: 245 NRT-IIQGHLDYVMDILVFHSSRQSGW--NECASSNGHCSHLCLAVPVGGFVCGCPAHYS 301
Query: 836 LESDGKTC 843
L +D +TC
Sbjct: 302 LNADNRTC 309
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 174/356 (48%), Gaps = 28/356 (7%)
Query: 504 CSHYCRNT-LGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVT----QAGV 558
CSH C +G + C C Y+L +D C A + LLF+ K I + Q+
Sbjct: 280 CSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF---LLFSQKSAINRMVIDEQQSPD 336
Query: 559 MTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPATS-------- 610
+ + IH+ N +D+D +D LYW D + IR++ + +S
Sbjct: 337 IILPIHSLRNVRAIDYDPLDKQLYWID--SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEI 394
Query: 611 -PDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWT 669
P L++D R +YW + + I V +LDGR V++ PR I +NP GYMY+T
Sbjct: 395 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFT 454
Query: 670 DWGQNA-HIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGE 728
+ + + I +A +DG+ +V+ LS P AL + +LFW D+ I SDL+G
Sbjct: 455 NLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 514
Query: 729 NIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHK 788
N +I++ N+ L VFE+ L+W D + + IE+ D TG+ + V+ + +
Sbjct: 515 N-RIVLEDS-----NILQPVGLTVFENWLYWIDKQQQMIEKID-MTGREGRTKVQARIAQ 567
Query: 789 PMDLRVYHPYRQTPLKDNPC-ENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
D+ + +PC ++NGGC +CL+K +G +C+CP + +L D +C
Sbjct: 568 LSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 623
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 193 bits (490), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 173/317 (54%), Gaps = 21/317 (6%)
Query: 542 LLFTNKYYIREVT-QAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMH---GSSIRRSC 597
L FTN++ +R++T T I N N V LD + N +YWSD++ + + R+
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63
Query: 598 NNSQPELLFP--ATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPR 655
S + + +PDGL VDW+ N+YW D L T+ VA G RK L + +PR
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR 123
Query: 656 GIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDA 715
I ++P +G+MYWTDWG A I K ++G + ++++N+ WPN +T+ + L+W D+
Sbjct: 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183
Query: 716 HEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTG 775
I+ D+NG N K I ++ L H F+LAVFED +FWTD ++I ++ TG
Sbjct: 184 KLHSISSIDVNGGNRKTI----LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239
Query: 776 KNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE----NNGGCQGLCLLKP--NGHR--- 826
+ + +NL+ P D+ ++H Q P N CE +NGGCQ LCL P N H
Sbjct: 240 SDVNLLAENLL-SPEDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKF 297
Query: 827 QCACPDNFILESDGKTC 843
CACPD +L D ++C
Sbjct: 298 TCACPDGMLLARDMRSC 314
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 141 bits (355), Expect = 3e-33, Method: Composition-based stats.
Identities = 81/237 (34%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 570 VGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPAT--SPDGLTVDWVGRNLYWCD 627
+GL FD VD +YW+D++ S R S + +P + SP+G+ +D +GR ++W D
Sbjct: 39 IGLAFDCVDKVVYWTDIS-EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD 97
Query: 628 KGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQ-NAHIGKAKMDGSN 686
LD IEVAK+DG R+VL + GL PRGI +P G +YWTDW + N I + MDG+N
Sbjct: 98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157
Query: 687 PKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHH 746
+++ NL PN LT +++L W DA E + R L +
Sbjct: 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH-------RAECLNPAQPGRRKVLEGLQY 210
Query: 747 VFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPL 803
FA+ + +L++TDW+ S+ D + K MD +HP++QT L
Sbjct: 211 PFAVTSYGKNLYYTDWKTNSVIAMDL------------AISKEMD--TFHPHKQTRL 253
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor
Ligand-Binding Modules 3-4 And The Receptor Associated
Protein (Rap)
Length = 80
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTT-KCKPNMFTCANHQCISLNWR 1189
+CS+ EF+C H CIS VCD D DC DGSDEA+C C P F C + CI W
Sbjct: 2 TCSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 1190 CDGEPDCSDNSDEIESICAG 1209
CD +PDC D SDE C G
Sbjct: 61 CDNDPDCEDGSDEWPQRCRG 80
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 971 KNCTANEFQC-DVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTW 1029
K C+ EF+C D KCIS VCD DCLD SDE A C TCGP +C++ CIP+ W
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQLW 59
Query: 1030 QCDGDVDCPNREDEPP 1045
CD D DC + DE P
Sbjct: 60 ACDNDPDCEDGSDEWP 75
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 1092 RNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNI-SCSKNEFKCSHPAHCISSDL 1150
+ CS++EFRC +GKCI +VC+ + DC D SDE +C + +C F+C+ + CI
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS-STCIPQLW 59
Query: 1151 VCDGDTDCWDGSDE 1164
CD D DC DGSDE
Sbjct: 60 ACDNDPDCEDGSDE 73
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 29 RDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCS--TCGNDTFHCDMGMCIHKALR 86
+ C F+C + KCI C++ DC DGSDEA C TCG +F C+ CI +
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 87 CDVDPDCPDASDE 99
CD DPDC D SDE
Sbjct: 61 CDNDPDCEDGSDE 73
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1211 ACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELE 1270
C F+C + KCI R +CD +C D SDE+ CP + C A+F+C + CI +
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP-VLTCGPASFQCNSSTCIPQLWA 60
Query: 1271 CDQYNDCGDNSDE 1283
CD DC D SDE
Sbjct: 61 CDNDPDCEDGSDE 73
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 291 ETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE---PIVSMWKLVWKCLNGRCLLENYY 347
+TC + F+C +G+C+ + CD + DC D SDE P+++ ++C + C+ + +
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 348 CDGENDCGDNSDEPP 362
CD + DC D SDE P
Sbjct: 61 CDNDPDCEDGSDEWP 75
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSAC 126
TC F C G CI + CD D DC D SDE CP+ C CN +S C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPAS------FQCN-SSTC 54
Query: 127 IEESYICDGQNDCFDMSDE 145
I + + CD DC D SDE
Sbjct: 55 IPQLWACDNDPDCEDGSDE 73
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVN 393
++C +G+C+ + CD + DC D SDE SCP C F+C + CIP + C+
Sbjct: 8 FRCHDGKCISRQFVCDSDRDCLDGSDEA-SCPVLTC-GPASFQCNSSTCIPQLWACDNDP 65
Query: 394 DCDDNSDE 401
DC+D SDE
Sbjct: 66 DCEDGSDE 73
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGRCLLE 308
C+ EFRC+ G+CI +VCD DC+D SDE V TC F+C + C+ +
Sbjct: 3 CSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDEAS----CPVLTCGPASFQCNSSTCIPQ 57
Query: 309 NYYCDGENDCGDNSDE 324
+ CD + DC D SDE
Sbjct: 58 LWACDNDPDCEDGSDE 73
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAM 1230
C F C + +CIS + CD + DC D SDE + C L C P F+C ++ CI +
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 1231 CDGIDNCGDNSDE 1243
CD +C D SDE
Sbjct: 61 CDNDPDCEDGSDE 73
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 845 HNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPN 904
CS +F C KCI + CD+ DC D SDE CP C P FQCN++ C+
Sbjct: 1 KTCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEA-SCPVLTCGPASFQCNSSTCIPQL 58
Query: 905 TICDGVNNCGDMSDE 919
CD +C D SDE
Sbjct: 59 WACDNDPDCEDGSDE 73
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCI 947
C +F+C++ KC+ +CD +C D SDE C TC F+C CI
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQC-------NSSTCI 55
Query: 948 SLLNRCDGHPDCPLGEDEHDCMPKNCTA 975
L CD PDC G DE P+ C
Sbjct: 56 PQLWACDNDPDCEDGSDE---WPQRCRG 80
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 371 NSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCIN 430
+ F C +G CI +C+ DC D SDE A C L P+ F C++ CI
Sbjct: 4 SQAEFRCHDGKCISRQFVCDSDRDCLDGSDE----ASCPVLT---CGPASFQCNSSTCIP 56
Query: 431 ETLTCNDINDCGDNSDEF 448
+ C++ DC D SDE+
Sbjct: 57 QLWACDNDPDCEDGSDEW 74
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSD 61
CI CD +C D SDE C + C P F+C+++ CI C+N DC DGSD
Sbjct: 15 CISRQFVCDSDRDCLDGSDEA--SCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 72
Query: 62 E 62
E
Sbjct: 73 E 73
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 1250 KLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLC---KFRTCSQICIEK 1303
K CS+A F+C +G CI ++ CD DC D SDE C C F+ S CI +
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQ 57
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHXXXXXXXXXXXXEKNCTPRNCSESEFRCANGKCIRPHYVC 1113
TC F+C++ KCI + E +C C + F+C + CI + C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 1114 NGENDCADHSDE 1125
+ + DC D SDE
Sbjct: 62 DNDPDCEDGSDE 73
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 126 CIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRW 177
CI ++CD DC D SDE +C P + C F C + CI W
Sbjct: 15 CISRQFVCDSDRDCLDGSDEASC-------PVLTCGPASFQCNSSTCIPQLW 59
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQCDVK-C 984
TC +F+C CIS CD DC G DE C C FQC+ C
Sbjct: 2 TCSQAEFRCH-------DGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTC 54
Query: 985 ISLALVCDKVFDCLDRSDE 1003
I CD DC D SDE
Sbjct: 55 IPQLWACDNDPDCEDGSDE 73
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 159 NCSGDKFLCRNGNCILSRWRXXXXXXXXXXXXXLSSDEMNCDTESTCKANNNVFQCDNNK 218
CS +F C +G CI ++ SDE +C + A+ FQC N+
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLD-----GSDEASCPVLTCGPAS---FQC-NSS 52
Query: 219 TCISKSWVCDGTYDCTDRSDENSTYC 244
TCI + W CD DC D SDE C
Sbjct: 53 TCIPQLWACDNDPDCEDGSDEWPQRC 78
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 419 SHFLCSNGLCINETLTCNDINDCGDNSDEFSCFVNECN 456
+ F C +G CI+ C+ DC D SDE SC V C
Sbjct: 6 AEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCG 43
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 845 HNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLP-GQFQCNNTKCLHP 903
C QF C + +CIP W CD DDCGD+SDE C C P QF CNN +C++
Sbjct: 3 RTCPPNQFSC-ASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCINI 61
Query: 904 NTICDGVNNCGDMSDELHC 922
N CD N+CGD SDE C
Sbjct: 62 NWRCDNDNDCGDNSDEAGC 80
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEP-NRFKCKNNKCIHRYA 1229
C PN F+CA+ +CI ++W CD + DC D SDE S CA C P +F C N +CI+
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS-CAYPTCFPLTQFTCNNGRCININW 63
Query: 1230 MCDGIDNCGDNSDESHC 1246
CD ++CGDNSDE+ C
Sbjct: 64 RCDNDNDCGDNSDEAGC 80
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 1208 AGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSE-ANFKCANGNCIK 1266
+ C PN+F C + +CI CD D+CGD SDES + C F C NG CI
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Query: 1267 KELECDQYNDCGDNSDEEGC 1286
CD NDCGDNSDE GC
Sbjct: 61 INWRCDNDNDCGDNSDEAGC 80
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 253 EFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCME-GYFKCLNGRCLLENYY 311
+F C ++G+CIPI+W CD DC D+SDE S TC F C NGRC+ N+
Sbjct: 9 QFSC-ASGRCIPISWTCDLDDDCGDRSDESAS---CAYPTCFPLTQFTCNNGRCININWR 64
Query: 312 CDGENDCGDNSDE 324
CD +NDCGDNSDE
Sbjct: 65 CDNDNDCGDNSDE 77
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 289 NVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLV-----WKCLNGRCLL 343
+ TC F C +GRC+ ++ CD ++DCGD SDE + + C NGRC+
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Query: 344 ENYYCDGENDCGDNSDE 360
N+ CD +NDCGDNSDE
Sbjct: 61 INWRCDNDNDCGDNSDE 77
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 1008 TSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDP-TYFKCNNYK 1066
+++TC P+ C +GRCIP +W CD D DC +R DE SCA P TC P T F CNN +
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYP---TCFPLTQFTCNNGR 57
Query: 1067 CIPGSWH 1073
CI +W
Sbjct: 58 CININWR 64
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVN 393
+ C +GRC+ ++ CD ++DCGD SDE SC C T F C NG CI C+ N
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDN 69
Query: 394 DCDDNSDE 401
DC DNSDE
Sbjct: 70 DCGDNSDE 77
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 971 KNCTANEFQC-DVKCISLALVCDKVFDCLDRSDEPADCTSQTCGP-DYIRCDTGRCIPKT 1028
+ C N+F C +CI ++ CD DC DRSDE A C TC P C+ GRCI
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININ 62
Query: 1029 WQCDGDVDCPNREDE 1043
W+CD D DC + DE
Sbjct: 63 WRCDNDNDCGDNSDE 77
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 374 HFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCINETL 433
F C +G CIP C+ +DC D SDE + A C + F C+NG CIN
Sbjct: 9 QFSCASGRCIPISWTCDLDDDCGDRSDESASCA-----YPTCFPLTQFTCNNGRCININW 63
Query: 434 TCNDINDCGDNSDEFSC 450
C++ NDCGDNSDE C
Sbjct: 64 RCDNDNDCGDNSDEAGC 80
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 210 NVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSEC-NLFEFRCNSTGQCIPITWV 268
N F C + + CI SW CD DC DRSDE S CA+ C L +F CN+ G+CI I W
Sbjct: 8 NQFSCASGR-CIPISWTCDLDDDCGDRSDE-SASCAYPTCFPLTQFTCNN-GRCININWR 64
Query: 269 CDGVTDCIDKSDE 281
CD DC D SDE
Sbjct: 65 CDNDNDCGDNSDE 77
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 27 AMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCSTCGNDT------FHCDMGMC 80
+ R C P F C + +CI S TC+ +DCGD SDE+ ++C T F C+ G C
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDES--ASCAYPTCFPLTQFTCNNGRC 58
Query: 81 IHKALRCDVDPDCPDASDEMHC 102
I+ RCD D DC D SDE C
Sbjct: 59 ININWRCDNDNDCGDNSDEAGC 80
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRP-GYFKCDNNKCILSSHTCNNINDCGDGS 60
CIP + TCD +C D+SDE CA C P F C+N +CI + C+N NDCGD S
Sbjct: 17 CIPISWTCDLDDDCGDRSDES-ASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNS 75
Query: 61 DEADCS 66
DEA CS
Sbjct: 76 DEAGCS 81
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 1090 TPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSK------NEFKCSHPA 1143
+ R C ++F CA+G+CI + C+ ++DC D SDE + SC+ +F C++
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE---SASCAYPTCFPLTQFTCNN-G 56
Query: 1144 HCISSDLVCDGDTDCWDGSDEANCT 1168
CI+ + CD D DC D SDEA C+
Sbjct: 57 RCININWRCDNDNDCGDNSDEAGCS 81
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHXXXXXXXXXXXXEK-NCTPRNCSE-SEFRCANGKCIRPHY 1111
TC P F C + +CIP SW E +C C ++F C NG+CI ++
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Query: 1112 VCNGENDCADHSDEINCN 1129
C+ +NDC D+SDE C+
Sbjct: 64 RCDNDNDCGDNSDEAGCS 81
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDE-MHCPMTNCTEKYPLMTNPIHCNFTSA 125
TC + F C G CI + CD+D DC D SDE C C +PL CN
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTC---FPLTQ--FTCN-NGR 57
Query: 126 CIEESYICDGQNDCFDMSDEQNC 148
CI ++ CD NDC D SDE C
Sbjct: 58 CININWRCDNDNDCGDNSDEAGC 80
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDE-LHCVDYTCLN-TQFKCKRDPAQGTGDH 945
C P QF C + +C+ + CD ++CGD SDE C TC TQF C
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG-------R 57
Query: 946 CISLLNRCDGHPDCPLGEDEHDC 968
CI++ RCD DC DE C
Sbjct: 58 CININWRCDNDNDCGDNSDEAGC 80
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 1248 SIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTC 1296
S + C F CA+G CI CD +DCGD SDE S C + TC
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE----SASCAYPTC 45
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 418 PSHFLCSNGLCINETLTCNDINDCGDNSDE 447
P+ F C++G CI + TC+ +DCGD SDE
Sbjct: 7 PNQFSCASGRCIPISWTCDLDDDCGDRSDE 36
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 123 TSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWR 178
+ CI S+ CD +DC D SDE P +F C NG CI WR
Sbjct: 14 SGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLT-----QFTCNNGRCININWR 64
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 56/127 (44%), Gaps = 24/127 (18%)
Query: 35 YFKCDNNKCILSSHTCNNINDCGDGSDEADCSTCGNDTFHCDMGMCIHKALRCDVDPDCP 94
+F+C N K I C+ INDCGD SDE C C FHC G+CI +C+ + DC
Sbjct: 208 FFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCI 267
Query: 95 DASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDV 154
DE+ C F S EE+ I DM E+ +IK +
Sbjct: 268 TGEDEVGCA-----------------GFASVAQEETEILTA-----DMDAERR--RIKSL 303
Query: 155 SPKMNCS 161
PK++C
Sbjct: 304 LPKLSCG 310
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 1217 FKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQYND 1276
F+C N K I + CDGI++CGD SDE C K C F C +G CI + +C+ D
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCC---KACQGKGFHCKSGVCIPSQYQCNGEVD 265
Query: 1277 CGDNSDEEGC 1286
C DE GC
Sbjct: 266 CITGEDEVGC 275
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 893 FQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNR 952
FQC N K + CDG+N+CGD SDEL C C F CK CI +
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCC--KACQGKGFHCKSGV-------CIPSQYQ 259
Query: 953 CDGHPDCPLGEDEHDCMPKNCTANE 977
C+G DC GEDE C A E
Sbjct: 260 CNGEVDCITGEDEVGCAGFASVAQE 284
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 240 NSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFK 299
NST C H C E S +C G D D D + M+ +F+
Sbjct: 159 NSTECLHVHCRGLE---TSLAECTFTKRRTMGYQDFADVVCYTQKAD-----SPMDDFFQ 210
Query: 300 CLNGRCLLENYYCDGENDCGDNSDEPIVSM-WKLVWKCLNGRCLLENYYCDGENDCGDNS 358
C+NG+ + + CDG NDCGD SDE + C +G C+ Y C+GE DC
Sbjct: 211 CVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGE 270
Query: 359 DE 360
DE
Sbjct: 271 DE 272
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 978 FQC-DVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVD 1036
FQC + K IS CD + DC D+SDE + C C +G CIP +QC+G+VD
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDE---LCCKACQGKGFHCKSGVCIPSQYQCNGEVD 265
Query: 1037 CPNREDE 1043
C EDE
Sbjct: 266 CITGEDE 272
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 1137 FKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDC 1196
F+C + + IS CDG DC D SDE C C+ F C + CI ++C+GE DC
Sbjct: 209 FQCVNGKY-ISQMKACDGINDCGDQSDEL-CCKACQGKGFHCKSGVCIPSQYQCNGEVDC 266
Query: 1197 SDNSDEIESICAGLA 1211
DE+ CAG A
Sbjct: 267 ITGEDEVG--CAGFA 279
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 196 EMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFR 255
++ C T+ ++ FQC N K IS+ CDG DC D+SDE C + C F
Sbjct: 193 DVVCYTQKADSPMDDFFQCVNGKY-ISQMKACDGINDCGDQSDE---LCCKA-CQGKGFH 247
Query: 256 CNSTGQCIPITWVCDGVTDCIDKSDE 281
C S G CIP + C+G DCI DE
Sbjct: 248 CKS-GVCIPSQYQCNGEVDCITGEDE 272
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 366 KTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSN 425
K D F+C NG I + C+G+NDC D SDE C++ + F C +
Sbjct: 200 KADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELC----CKACQG-----KGFHCKS 250
Query: 426 GLCINETLTCNDINDCGDNSDEFSC 450
G+CI CN DC DE C
Sbjct: 251 GVCIPSQYQCNGEVDCITGEDEVGC 275
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 1174 NMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDG 1233
+ F C N + IS CDG DC D SDE+ C AC+ F CK+ CI C+G
Sbjct: 207 DFFQCVNGKYISQMKACDGINDCGDQSDEL--CCK--ACQGKGFHCKSGVCIPSQYQCNG 262
Query: 1234 IDNCGDNSDESHCPSIKLCSE 1254
+C DE C ++
Sbjct: 263 EVDCITGEDEVGCAGFASVAQ 283
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 70 NDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEE 129
+D F C G I + CD DC D SDE+ C C K HC + CI
Sbjct: 206 DDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA--CQGK------GFHCK-SGVCIPS 256
Query: 130 SYICDGQNDCFDMSDEQNCDQIKDVS 155
Y C+G+ DC DE C V+
Sbjct: 257 QYQCNGEVDCITGEDEVGCAGFASVA 282
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 1092 RNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
+ C F C +G CI Y CNGE DC DE+ C
Sbjct: 239 KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 7 QTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCS 66
+ CD + +C D+SDE L C + C+ F C + CI S + CN DC G DE C+
Sbjct: 221 KACDGINDCGDQSDE--LCC--KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCA 276
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 401 EDMNHAECRSLKDLCKHPSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
+D C + K F C NG I++ C+ INDCGD SDE C
Sbjct: 189 QDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCC 238
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 127 IEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWR 178
I + CDG NDC D SDE C C G F C++G CI S+++
Sbjct: 217 ISQMKACDGINDCGDQSDELCCKA---------CQGKGFHCKSGVCIPSQYQ 259
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1170 KCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKC--KNNKCIHR 1227
+C+ N F C + +CIS W CDG +C D SDE + C + C+ F C + N+CI +
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 66
Query: 1228 YAMCDGIDNCGDNSDESHC 1246
+ CDG +C + SDE C
Sbjct: 67 FWRCDGQVDCDNGSDEQGC 85
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 206 KANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNS-TGQCIP 264
+ N FQC + K CIS WVCDG+ +C D SDE+ C C +F C +CIP
Sbjct: 7 RCERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 65
Query: 265 ITWVCDGVTDCIDKSDEH 282
W CDG DC + SDE
Sbjct: 66 QFWRCDGQVDCDNGSDEQ 83
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 969 MPKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDEPAD-CTSQTCGPDYIRCD--TGRC 1024
+ C NEFQC D KCIS VCD +C D SDE + C S TC C RC
Sbjct: 4 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRC 63
Query: 1025 IPKTWQCDGDVDCPNREDE 1043
IP+ W+CDG VDC N DE
Sbjct: 64 IPQFWRCDGQVDCDNGSDE 82
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 1132 CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCT---TKCKPNMFTCANH--QCISL 1186
C +NEF+C CIS VCDG +C DGSDE+ T CK F+C +CI
Sbjct: 8 CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 66
Query: 1187 NWRCDGEPDCSDNSDE 1202
WRCDG+ DC + SDE
Sbjct: 67 FWRCDGQVDCDNGSDE 82
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 1094 CSESEFRCANGKCIRPHYVCNGENDCADHSDEIN---CNISCSKNEFKCSHPA-HCISSD 1149
C +EF+C +GKCI +VC+G +C D SDE +++C +F C CI
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 67
Query: 1150 LVCDGDTDCWDGSDEANC 1167
CDG DC +GSDE C
Sbjct: 68 WRCDGQVDCDNGSDEQGC 85
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 887 HCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELH--CVDYTCLNTQFKCKRDPAQGTGD 944
C +FQC + KC+ +CDG C D SDE C+ TC + F C G +
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCG-----GRVN 61
Query: 945 HCISLLNRCDGHPDCPLGEDEHDC 968
CI RCDG DC G DE C
Sbjct: 62 RCIPQFWRCDGQVDCDNGSDEQGC 85
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 1208 AGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESH--CPSIKLCSEANFKCAN--GN 1263
G CE N F+C++ KCI +CDG C D SDES C S+ C +F C
Sbjct: 4 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV-TCKSGDFSCGGRVNR 62
Query: 1264 CIKKELECDQYNDCGDNSDEEGC 1286
CI + CD DC + SDE+GC
Sbjct: 63 CIPQFWRCDGQVDCDNGSDEQGC 85
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEP-PSCPKTDCDNSTHFECQN--GNCIPSVLLCN 390
++C +G+C+ + CDG +C D SDE +C C S F C CIP C+
Sbjct: 13 FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTC-KSGDFSCGGRVNRCIPQFWRCD 71
Query: 391 GVNDCDDNSDE 401
G DCD+ SDE
Sbjct: 72 GQVDCDNGSDE 82
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEAD----CSTCGNDTFHCD--MGMCIHKA 84
C F+C + KCI C+ +C DGSDE+ TC + F C + CI +
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 67
Query: 85 LRCDVDPDCPDASDEMHC 102
RCD DC + SDE C
Sbjct: 68 WRCDGQVDCDNGSDEQGC 85
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 68 CGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACI 127
C + F C G CI CD +C D SDE + T K + N CI
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVN---RCI 64
Query: 128 EESYICDGQNDCFDMSDEQNC 148
+ + CDGQ DC + SDEQ C
Sbjct: 65 PQFWRCDGQVDCDNGSDEQGC 85
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKCILSSHTCNNINDCGDG 59
CI + CD C D SDE C C+ G F C N+CI C+ DC +G
Sbjct: 20 CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNG 79
Query: 60 SDEADC 65
SDE C
Sbjct: 80 SDEQGC 85
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 291 ETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNG---------RC 341
+ C F+C +G+C+ + CDG +C D SDE + + C +G RC
Sbjct: 6 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT--CKSGDFSCGGRVNRC 63
Query: 342 LLENYYCDGENDCGDNSDE 360
+ + + CDG+ DC + SDE
Sbjct: 64 IPQFWRCDGQVDCDNGSDE 82
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE-HDQCPQFHCLPGQFQCNN--TKCLHP 903
C +F C+ KCI + W CD +C D SDE + C C G F C +C+
Sbjct: 8 CERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 66
Query: 904 NTICDGVNNCGDMSDELHC 922
CDG +C + SDE C
Sbjct: 67 FWRCDGQVDCDNGSDEQGC 85
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 374 HFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGL--CINE 431
F+CQ+G CI +C+G +C D SDE L CK F C + CI +
Sbjct: 12 EFQCQDGKCISYKWVCDGSAECQDGSDESQETC----LSVTCK-SGDFSCGGRVNRCIPQ 66
Query: 432 TLTCNDINDCGDNSDEFSC 450
C+ DC + SDE C
Sbjct: 67 FWRCDGQVDCDNGSDEQGC 85
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 933 KCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHD--CMPKNCTANEFQCDV---KCISL 987
+C+R+ Q CIS CDG +C G DE C+ C + +F C +CI
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 66
Query: 988 ALVCDKVFDCLDRSDEPA 1005
CD DC + SDE
Sbjct: 67 FWRCDGQVDCDNGSDEQG 84
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 1055 CDPTYFKCNNYKCIPGSW--HXXXXXXXXXXXXEKNCTPRNCSESEFRCAN--GKCIRPH 1110
C+ F+C + KCI W ++ C C +F C +CI
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 67
Query: 1111 YVCNGENDCADHSDEINC 1128
+ C+G+ DC + SDE C
Sbjct: 68 WRCDGQVDCDNGSDEQGC 85
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDE------------ADCSTCGNDTFHCDMG 78
C P F+C+++ CI C+N DC DGSDE D S C FHC G
Sbjct: 7 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG 66
Query: 79 MCIHKALRCDVDPDCPDASDEMHCPMTN 106
CIH + RCD PDC D SDE +C +
Sbjct: 67 ECIHSSWRCDGGPDCKDKSDEENCAVAT 94
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGL--------ACEPNRFKCKNN 1222
C P F C + CI W CD +PDC D SDE C GL C F C +
Sbjct: 7 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG 66
Query: 1223 KCIHRYAMCDGIDNCGDNSDESHC 1246
+CIH CDG +C D SDE +C
Sbjct: 67 ECIHSSWRCDGGPDCKDKSDEENC 90
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCA--------HSECNLFEFRCNSTGQCI 263
FQC N+ TCI + W CD DC D SDE C S C+ FEF C S G+CI
Sbjct: 12 FQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS-GECI 69
Query: 264 PITWVCDGVTDCIDKSDEHH 283
+W CDG DC DKSDE +
Sbjct: 70 HSSWRCDGGPDCKDKSDEEN 89
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 33/121 (27%)
Query: 1011 TCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPG 1070
TCGP +C++ CIP+ W CD D DC + DE P +C G
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ--------------RCRGLYVFQG 51
Query: 1071 SWHXXXXXXXXXXXXEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNI 1130
+ +P CS EF C +G+CI + C+G DC D SDE NC +
Sbjct: 52 -----------------DSSP--CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAV 92
Query: 1131 S 1131
+
Sbjct: 93 A 93
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKY-------PLMTNPIH 119
TCG +F C+ CI + CD DPDC D SDE C Y P H
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW---PQRCRGLYVFQGDSSPCSAFEFH 62
Query: 120 CNFTSACIEESYICDGQNDCFDMSDEQNC 148
C + CI S+ CDG DC D SDE+NC
Sbjct: 63 C-LSGECIHSSWRCDGGPDCKDKSDEENC 90
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNV-------ETCMEGYFKCL 301
C F+CNS+ CIP W CD DC D SDE Q C + C F CL
Sbjct: 7 CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEW-PQRCRGLYVFQGDSSPCSAFEFHCL 64
Query: 302 NGRCLLENYYCDGENDCGDNSDE 324
+G C+ ++ CDG DC D SDE
Sbjct: 65 SGECIHSSWRCDGGPDCKDKSDE 87
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 1130 ISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDE-----------ANCTTKCKPNMFTC 1178
++C F+C+ + CI CD D DC DGSDE ++ C F C
Sbjct: 5 LTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC 63
Query: 1179 ANHQCISLNWRCDGEPDCSDNSDE 1202
+ +CI +WRCDG PDC D SDE
Sbjct: 64 LSGECIHSSWRCDGGPDCKDKSDE 87
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 1210 LACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDE--SHCPSIKL-------CSEANFKCA 1260
L C P F+C ++ CI + CD +C D SDE C + + CS F C
Sbjct: 5 LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL 64
Query: 1261 NGNCIKKELECDQYNDCGDNSDEEGC 1286
+G CI CD DC D SDEE C
Sbjct: 65 SGECIHSSWRCDGGPDCKDKSDEENC 90
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 846 NCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQ-CPQFHCLPG--------QFQCN 896
C F C + CIP W CD DC D SDE Q C + G +F C
Sbjct: 6 TCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL 64
Query: 897 NTKCLHPNTICDGVNNCGDMSDELHCVDYT 926
+ +C+H + CDG +C D SDE +C T
Sbjct: 65 SGECIHSSWRCDGGPDCKDKSDEENCAVAT 94
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 373 THFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPS-----HFLCSNGL 427
F+C + CIP + C+ DC+D SDE CR L S F C +G
Sbjct: 10 ASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR--CRGLYVFQGDSSPCSAFEFHCLSGE 67
Query: 428 CINETLTCNDINDCGDNSDEFSCFV 452
CI+ + C+ DC D SDE +C V
Sbjct: 68 CIHSSWRCDGGPDCKDKSDEENCAV 92
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 290 VETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE-PIVSMWKLVWK------------C 336
V TC F+C + C+ + + CD + DC D SDE P V++ C
Sbjct: 4 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC 63
Query: 337 LNGRCLLENYYCDGENDCGDNSDE 360
L+G C+ ++ CDG DC D SDE
Sbjct: 64 LSGECIHSSWRCDGGPDCKDKSDE 87
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 1093 NCSESEFRCANGKCIRPHYVCNGENDCADHSDEI-----------NCNISCSKNEFKCSH 1141
C + F+C + CI + C+ + DC D SDE + CS EF C
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 65
Query: 1142 PAHCISSDLVCDGDTDCWDGSDEANCTTK 1170
CI S CDG DC D SDE NC
Sbjct: 66 -GECIHSSWRCDGGPDCKDKSDEENCAVA 93
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 972 NCTANEFQCDVK-CISLALVCDKVFDCLDRSDE-PADCT--------SQTCGPDYIRCDT 1021
C FQC+ CI CD DC D SDE P C S C C +
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 65
Query: 1022 GRCIPKTWQCDGDVDCPNREDE 1043
G CI +W+CDG DC ++ DE
Sbjct: 66 GECIHSSWRCDGGPDCKDKSDE 87
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 325 PIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPS------CPKTDCDNSTHFE-- 376
P+++ ++C + C+ + + CD + DC D SDE P + D + FE
Sbjct: 3 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 62
Query: 377 CQNGNCIPSVLLCNGVNDCDDNSDED 402
C +G CI S C+G DC D SDE+
Sbjct: 63 CLSGECIHSSWRCDGGPDCKDKSDEE 88
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 884 PQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDEL--HCVD-YTCLNTQFKCKRDPAQ 940
P C P FQCN++ C+ CD +C D SDE C Y C
Sbjct: 3 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 62
Query: 941 GTGDHCISLLNRCDGHPDCPLGEDEHDCM 969
CI RCDG PDC DE +C
Sbjct: 63 CLSGECIHSSWRCDGGPDCKDKSDEENCA 91
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 112 PLMT---NPIHCNFTSACIEESYICDGQNDCFDMSDE--QNCDQI----KDVSPKMNCSG 162
P++T CN +S CI + + CD DC D SDE Q C + D SP CS
Sbjct: 3 PVLTCGPASFQCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP---CSA 58
Query: 163 DKFLCRNGNCILSRWR 178
+F C +G CI S WR
Sbjct: 59 FEFHCLSGECIHSSWR 74
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 1 MCIPFNQTCDRVYNCHDKSDEGI-----LYCAMRDCRP---GYFKCDNNKCILSSHTCNN 52
CIP CD +C D SDE LY D P F C + +CI SS C+
Sbjct: 18 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDG 77
Query: 53 INDCGDGSDEADCST 67
DC D SDE +C+
Sbjct: 78 GPDCKDKSDEENCAV 92
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 41/106 (38%)
Query: 155 SPKMNCSGDKFLCRNGNCILSRWRXXXXXXXXXXXXXLSSDEMNCDTESTCKANNN---- 210
SP + C F C + CI W CD + C+ ++
Sbjct: 2 SPVLTCGPASFQCNSSTCIPQLWA--------------------CDNDPDCEDGSDEWPQ 41
Query: 211 ------VFQCDNNK-----------TCISKSWVCDGTYDCTDRSDE 239
VFQ D++ CI SW CDG DC D+SDE
Sbjct: 42 RCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 87
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRN 510
NEC ++GG C+H C DLKIGY+C C G+Q+ + + C D +EC D CS C N
Sbjct: 2 TNECLDNNGG--CSHVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVN 57
Query: 511 TLGSYSCSCAPGYALLSDKHGCKAT 535
G Y C C G+ L CKA
Sbjct: 58 LEGGYKCQCEEGFQLDPHTKACKAV 82
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 422 LCSNGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRK 481
LC +G + C DI++C D C+ C++L+ GYKC C +
Sbjct: 26 LCPDGFQLVAQRRCEDIDECQDPD-----------------TCSQLCVNLEGGYKCQCEE 68
Query: 482 GYQVHPEDK 490
G+Q+ P K
Sbjct: 69 GFQLDPHTK 77
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRN 510
NEC ++GG C+H C DLKIGY+C C G+Q+ + + C D +EC D CS C N
Sbjct: 29 TNECLDNNGG--CSHVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVN 84
Query: 511 TLGSYSCSCAPGYALLSDKHGCK 533
G Y C C G+ L CK
Sbjct: 85 LEGGYKCQCEEGFQLDPHTKACK 107
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 422 LCSNGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRK 481
LC +G + C DI++C D C+ C++L+ GYKC C +
Sbjct: 53 LCPDGFQLVAQRRCEDIDECQDPD-----------------TCSQLCVNLEGGYKCQCEE 95
Query: 482 GYQVHPEDK 490
G+Q+ P K
Sbjct: 96 GFQLDPHTK 104
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 414 LCKHPSHFLCSNGLCINETLTCNDINDCGDNSDE--FSCFVNECNVSHGGQLCAHECIDL 471
LC+ P+ F C +G CI CN DC D SDE C NEC ++GG C+H C DL
Sbjct: 5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG--CSHVCNDL 62
Query: 472 KIGYKCACRKGYQVHPEDK 490
KIGY+C C G+Q+ + +
Sbjct: 63 KIGYECLCPDGFQLVAQRR 81
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 1248 SIKLCSEAN-FKCANGNCIKKELECDQYNDCGDNSDEE----GCDSPLCKFRTCSQICIE 1302
++ LC N FKC +G CI + C+ DC D SDE G + L CS +C +
Sbjct: 2 NVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCND 61
Query: 1303 KKISNTERTFSCHCAEGYHMV 1323
KI + C C +G+ +V
Sbjct: 62 LKIG-----YECLCPDGFQLV 77
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRN 510
NEC ++GG C+H C DLKIGY+C C G+Q+ + + C D +EC D CS C N
Sbjct: 2 TNECLDNNGG--CSHVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVN 57
Query: 511 TLGSYSCSCAPGYALLSDKHGCK 533
G Y C C G+ L CK
Sbjct: 58 LEGGYKCQCEEGFQLDPHTKACK 80
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 422 LCSNGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRK 481
LC +G + C DI++C D C+ C++L+ GYKC C +
Sbjct: 26 LCPDGFQLVAQRRCEDIDECQDPD-----------------TCSQLCVNLEGGYKCQCEE 68
Query: 482 GYQVHPEDK 490
G+Q+ P K
Sbjct: 69 GFQLDPHTK 77
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRN 510
NEC ++GG C+H C DLKIGY+C C G+Q+ + + C D +EC D CS C N
Sbjct: 5 TNECLDNNGG--CSHVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVN 60
Query: 511 TLGSYSCSCAPGYALLSDKHGCK 533
G Y C C G+ L CK
Sbjct: 61 LEGGYKCQCEEGFQLDPHTKACK 83
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 422 LCSNGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRK 481
LC +G + C DI++C D C+ C++L+ GYKC C +
Sbjct: 29 LCPDGFQLVAQRRCEDIDECQDPD-----------------TCSQLCVNLEGGYKCQCEE 71
Query: 482 GYQVHPEDK 490
G+Q+ P K
Sbjct: 72 GFQLDPHTK 80
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRN 510
NEC ++GG C++ C DLKIGY+C C G+Q+ + + C D +EC D CS C N
Sbjct: 29 TNECLDNNGG--CSYVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVN 84
Query: 511 TLGSYSCSCAPGYALLSDKHGCK 533
G Y C C G+ L CK
Sbjct: 85 LEGGYKCQCEEGFQLDPHTKACK 107
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 23/100 (23%)
Query: 391 GVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
G N+C DN + C + + K LC +G + C DI++C D
Sbjct: 28 GTNECLDN------NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPD----- 76
Query: 451 FVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDK 490
C+ C++L+ GYKC C +G+Q+ P K
Sbjct: 77 ------------TCSQLCVNLEGGYKCQCEEGFQLDPHTK 104
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR-PCSHYCRN 510
NEC ++GG C++ C DLKIGY+C C G+Q+ + + C D +EC D CS C N
Sbjct: 5 TNECLDNNGG--CSYVCNDLKIGYECLCPDGFQLVAQRR--CEDIDECQDPDTCSQLCVN 60
Query: 511 TLGSYSCSCAPGYALLSDKHGCK 533
G Y C C G+ L CK
Sbjct: 61 LEGGYKCQCEEGFQLDPHTKACK 83
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 23/100 (23%)
Query: 391 GVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
G N+C DN + C + + K LC +G + C DI++C D
Sbjct: 4 GTNECLDN------NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPD----- 52
Query: 451 FVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDK 490
C+ C++L+ GYKC C +G+Q+ P K
Sbjct: 53 ------------TCSQLCVNLEGGYKCQCEEGFQLDPHTK 80
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 1170 KCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESIC 1207
+C+P F CAN +CI W+CDG+ DC DNSDE ++C
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALC 42
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 292 TCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
C G F C N RC+ E + CDG+NDC DNSDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 1090 TPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEI 1126
+P C EF CAN +CI+ + C+G+NDC D+SDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPPS 363
+ C N RC+ E + CDG+NDC DNSDE P+
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 37.4 bits (85), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDES 1244
C+P F C N++CI CDG ++C DNSDE+
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 1248 SIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDE 1283
S C F CAN CI++ +CD NDC DNSDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEA 63
C+PG F C N++CI C+ NDC D SDEA
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 1008 TSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPS 1046
+ C P C RCI + W+CDGD DC + DE P+
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 887 HCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDE 919
C PG+F C N++C+ CDG N+C D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 417 HPSHFLCSNGLCINETLTCNDINDCGDNSDE 447
P F C+N CI E C+ NDC DNSDE
Sbjct: 7 QPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDENSTYC 244
F C N++ CI + W CDG DC D SDE C
Sbjct: 11 FACANSR-CIQERWKCDGDNDCLDNSDEAPALC 42
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEA 1165
C EF C++ + CI CDGD DC D SDEA
Sbjct: 5 QCQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEA 38
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 248 ECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
+C EF C + +CI W CDG DC+D SDE
Sbjct: 5 QCQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDE 37
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 846 NCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
C G+F C + +CI WKCD +DC D SDE
Sbjct: 5 QCQPGEFACANS-RCIQERWKCDGDNDCLDNSDE 37
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 124 SACIEESYICDGQNDCFDMSDE 145
S CI+E + CDG NDC D SDE
Sbjct: 16 SRCIQERWKCDGDNDCLDNSDE 37
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 361 PPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDE 401
PP C F C N CI C+G NDC DNSDE
Sbjct: 3 PPQC------QPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 1092 RNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCN 1129
+CS ++F+C +G+CI H+ C+G+NDC D+SDE + N
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 292 TCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
+C FKC +GRC+ E++ CDG+NDCGD SDE
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 1009 SQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
S +C +C++GRCIP+ W CDGD DC + DE
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHS 284
C+ +F+CNS G+CIP W CDG DC D SDE H+
Sbjct: 5 CSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 845 HNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
H+CS+ QF C + +CIP W CD +DCGD SDE
Sbjct: 3 HSCSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDE 360
+KC +GRC+ E++ CDG+NDCGD SDE
Sbjct: 10 FKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELH 921
C QF+CN+ +C+ + CDG N+CGD SDE H
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38
Score = 37.7 bits (86), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1211 ACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESH 1245
+C +FKC + +CI + CDG ++CGD SDE+H
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38
Score = 37.0 bits (84), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 371 NSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAEC 408
+ST F+C +G CIP C+G NDC D SDE HA C
Sbjct: 6 SSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE--THANC 41
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDE 1283
CS FKC +G CI + CD NDCGD SDE
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 1170 KCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICA 1208
C F C + +CI +W CDG+ DC D SDE + C
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDE--ANCTTK 1170
SCS +FKC+ CI CDGD DC D SDE ANCT +
Sbjct: 4 SCSSTQFKCN-SGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTN 106
+C + F C+ G CI + CD D DC D SDE H TN
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 419 SHFLCSNGLCINETLTCNDINDCGDNSDE 447
+ F C++G CI E TC+ NDCGD SDE
Sbjct: 8 TQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEA 63
C FKC++ +CI TC+ NDCGD SDE
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCA 245
F+C N+ CI + W CDG DC D SDE C
Sbjct: 10 FKC-NSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 491 HLCVDTNEC---LDRPCSHYCRNTLGSYSCSCAPGYALLSDKHGC 532
++ D NEC +D PCSH+C N +G Y CSC P Y L D C
Sbjct: 112 YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 494 VDTNECLDRP----------CSHYCRNTLGSYSCSCAPGYALLSDKHGCKA 534
VD +EC R C H C N +G Y CSC PGY L D+H C+A
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 482 GYQVHPEDKHLCVDTNECLDR-----PCSHYCRNTLGSYSCSCAPGYALLSDKHGCKA 534
G+ H ++ VD +EC +R C HYC N +G Y CSC GY L +D C+
Sbjct: 111 GFDAH----YMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRV 164
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 482 GYQVHPEDKHLCVDTNECLDR-----PCSHYCRNTLGSYSCSCAPGYALLSDKHGCKA 534
G+ H ++ VD +EC +R C HYC N +G Y CSC GY L +D C+
Sbjct: 111 GFDAH----YMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRV 164
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSV-LLCNGV 392
++C +GRC+ C+GENDCGDNSDE DC + + N IPSV L+ NG
Sbjct: 123 FRCDSGRCIARKLECNGENDCGDNSDE------RDCGRTKAVCTRKYNPIPSVQLMGNGF 176
Query: 393 N 393
+
Sbjct: 177 H 177
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 1256 NFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
F+C +G CI ++LEC+ NDCGDNSDE C
Sbjct: 122 KFRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 61 DEADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTN--CTEKY------P 112
+EADC + F CD G CI + L C+ + DC D SDE C T CT KY
Sbjct: 115 EEADC----KNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPSVQ 170
Query: 113 LMTNPIH 119
LM N H
Sbjct: 171 LMGNGFH 177
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 1096 ESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
+++FRC +G+CI CNGENDC D+SDE +C
Sbjct: 120 KNKFRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 298 FKCLNGRCLLENYYCDGENDCGDNSDE 324
F+C +GRC+ C+GENDCGDNSDE
Sbjct: 123 FRCDSGRCIARKLECNGENDCGDNSDE 149
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 366 KTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKH-----PSH 420
+ DC N F C +G CI L CNG NDC DNSDE +C K +C PS
Sbjct: 116 EADCKNK--FRCDSGRCIARKLECNGENDCGDNSDE----RDCGRTKAVCTRKYNPIPSV 169
Query: 421 FLCSNGL 427
L NG
Sbjct: 170 QLMGNGF 176
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 36 FKCDNNKCILSSHTCNNINDCGDGSDEADC 65
F+CD+ +CI CN NDCGD SDE DC
Sbjct: 123 FRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 1215 NRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIK 1250
N+F+C + +CI R C+G ++CGDNSDE C K
Sbjct: 121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTK 156
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 421 FLCSNGLCINETLTCNDINDCGDNSDEFSC 450
F C +G CI L CN NDCGDNSDE C
Sbjct: 123 FRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 1003 EPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
E ADC ++ RCD+GRCI + +C+G+ DC + DE
Sbjct: 115 EEADCKNK------FRCDSGRCIARKLECNGENDCGDNSDE 149
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 1163 DEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
+EA+C N F C + +CI+ C+GE DC DNSDE
Sbjct: 115 EEADCK-----NKFRCDSGRCIARKLECNGENDCGDNSDE 149
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1134 KNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
KN+F+C CI+ L C+G+ DC D SDE +C
Sbjct: 120 KNKFRCDS-GRCIARKLECNGENDCGDNSDERDC 152
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 116 NPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDV 154
N C+ + CI C+G+NDC D SDE++C + K V
Sbjct: 121 NKFRCD-SGRCIARKLECNGENDCGDNSDERDCGRTKAV 158
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 892 QFQCNNTKCLHPNTICDGVNNCGDMSDELHC 922
+F+C++ +C+ C+G N+CGD SDE C
Sbjct: 122 KFRCDSGRCIARKLECNGENDCGDNSDERDC 152
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
C+ EF+C G CIP+ W CDG TDC+D SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
C +EF+C CI CDGDTDC D SDE +C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 1171 CKPNMFTC-ANHQCISLNWRCDGEPDCSDNSDE 1202
C + F C + CI L WRCDG+ DC D+SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 208 NNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENS 241
+ + FQC + CI W CDG DC D SDE S
Sbjct: 5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 115 TNPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQI 151
T+ C CI + CDG DC D SDE++C+ +
Sbjct: 6 TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 1091 PRNCSESEFRC-ANGKCIRPHYVCNGENDCADHSDEINCN 1129
P C EF+C +G CI + C+G+ DC D SDE +C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 68 CGNDTFHCDM-GMCIHKALRCDVDPDCPDASDEMHC 102
C D F C + G+CI RCD D DC D+SDE C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 846 NCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
C +F C CIP W+CD DC D SDE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 970 PKNCTANEFQC--DVKCISLALVCDKVFDCLDRSDEPA 1005
P C +EFQC D CI L CD DC+D SDE +
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1022 GRCIPKTWQCDGDVDCPNREDE 1043
G CIP W+CDGD DC + DE
Sbjct: 15 GLCIPLRWRCDGDTDCMDSSDE 36
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 1091 PRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCN 1129
P +C ++++ C N +CI ++VC+ +NDC D SDE NCN
Sbjct: 4 PASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
C +TC NHQCIS NW CD + DC D SDE
Sbjct: 7 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDE 38
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHC 922
CL Q+ C+N +C+ N +CD N+CGD SDE +C
Sbjct: 7 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 41
Score = 37.4 bits (85), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 292 TCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
+C++ + C N +C+ +N+ CD +NDCGD SDE
Sbjct: 6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDE 38
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 27 AMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCST 67
A C + CDN++CI + C+ NDCGDGSDE +C++
Sbjct: 3 APASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNS 43
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1244 SHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDS 1288
+H P+ C + + C N CI K CD NDCGD SDE+ C+S
Sbjct: 1 THAPA--SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNS 43
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 1208 AGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIK 1250
A +C ++ C N++CI + +CD ++CGD SDE +C S +
Sbjct: 3 APASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNSTE 45
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
SC ++ C + CIS + VCD D DC DGSDE NC
Sbjct: 6 SCLDTQYTCDN-HQCISKNWVCDTDNDCGDGSDEKNC 41
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDE 360
+ C N +C+ +N+ CD +NDCGD SDE
Sbjct: 12 YTCDNHQCISKNWVCDTDNDCGDGSDE 38
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDE 239
+ CDN++ CISK+WVCD DC D SDE
Sbjct: 12 YTCDNHQ-CISKNWVCDTDNDCGDGSDE 38
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 66 STCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMT 105
++C + + CD CI K CD D DC D SDE +C T
Sbjct: 5 ASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNST 44
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 126 CIEESYICDGQNDCFDMSDEQNCDQIK 152
CI ++++CD NDC D SDE+NC+ +
Sbjct: 19 CISKNWVCDTDNDCGDGSDEKNCNSTE 45
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 419 SHFLCSNGLCINETLTCNDINDCGDNSDEFSCFVNE 454
+ + C N CI++ C+ NDCGD SDE +C E
Sbjct: 10 TQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNSTE 45
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
C Q+ C+ +CI W CDT +DCGD SDE
Sbjct: 7 CLDTQYTCDN-HQCISKNWVCDTDNDCGDGSDE 38
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1170 KCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGL 1210
+C+ N F C + +CIS W CDG +C D SDE + C +
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV 47
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 206 KANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYC 244
+ N FQC + K CIS WVCDG+ +C D SDE+ C
Sbjct: 7 RCERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETC 44
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 1208 AGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESH 1245
G CE N F+C++ KCI +CDG C D SDES
Sbjct: 4 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ 41
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1093 NCSESEFRCANGKCIRPHYVCNGENDCADHSDE 1125
C +EF+C +GKCI +VC+G +C D SDE
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1132 CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCT 1168
C +NEF+C CIS VCDG +C DGSDE+ T
Sbjct: 8 CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQET 43
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNV 290
C EF+C G+CI WVCDG +C D SDE + CL+V
Sbjct: 8 CERNEFQCQD-GKCISYKWVCDGSAECQDGSDESQ-ETCLSV 47
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 969 MPKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDEPAD 1006
+ C NEFQC D KCIS VCD +C D SDE +
Sbjct: 4 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 887 HCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNT 930
C +FQC + KC+ +CDG C D SDE TCL+
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ---ETCLSV 47
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 374 HFECQNGNCIPSVLLCNGVNDCDDNSDE 401
F+CQ+G CI +C+G +C D SDE
Sbjct: 12 EFQCQDGKCISYKWVCDGSAECQDGSDE 39
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 293 CMEGYFKCLNGRCLLENYYCDGENDCGDNSDEP 325
C F+C +G+C+ + CDG +C D SDE
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDES 40
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 452 VNECNVSHGGQLCAH-ECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPC---SHY 507
++EC +S LC +C++ ++C C +GY+ C+D +EC P
Sbjct: 3 IDECRISP--DLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGV 60
Query: 508 CRNTLGSYSCSCAPGYALLSDKHGC 532
C NT GSY C C PG+ L + C
Sbjct: 61 CHNTEGSYRCECPPGHQLSPNISAC 85
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 1130 ISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTK 1170
++C+ +FKC+ + CI+S CDG DC D SDEA C T+
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTR 45
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 1252 CSEANFKCANGN-CIKKELECDQYNDCGDNSDEEGC 1286
C+ A FKCA+G+ CI CD DC DNSDE GC
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 1093 NCSESEFRCANGK-CIRPHYVCNGENDCADHSDEINC 1128
NC+ ++F+CA+G CI Y C+G DC D+SDE C
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 1210 LACEPNRFKCKN-NKCIHRYAMCDGIDNCGDNSDESHCPS 1248
L C +FKC + + CI+ CDG+ +C DNSDE+ CP+
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDE 239
F+C + +CI+ + CDG YDC D SDE
Sbjct: 12 FKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 290 VETCMEGYFKCLNGR-CLLENYYCDGENDCGDNSDE 324
V C FKC +G C+ Y CDG DC DNSDE
Sbjct: 4 VLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 30 DCRPGYFKC-DNNKCILSSHTCNNINDCGDGSDEADCST 67
+C FKC D + CI S + C+ + DC D SDEA C T
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1171 CKPNMFTCAN-HQCISLNWRCDGEPDCSDNSDE 1202
C F CA+ CI+ +RCDG DC DNSDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 969 MPKNCTANEFQC--DVKCISLALVCDKVFDCLDRSDEPADCTSQTCG 1013
M NCT+ +F+C CI+ CD V+DC D SDE A C ++ G
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE-AGCPTRPPG 48
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
C +F+C CI + CDGV DC D SDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 372 STHFECQNGN-CIPSVLLCNGVNDCDDNSDE 401
S F+C +G+ CI S C+GV DC DNSDE
Sbjct: 9 SAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 846 NCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
NC++ QF C CI ++CD DC D SDE
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 419 SHFLCSNGL-CINETLTCNDINDCGDNSDEFSC 450
+ F C++G CIN C+ + DC DNSDE C
Sbjct: 10 AQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 503 PCSHYCRNTLGSYSCSCAPGYALLSDKHGCKA 534
PC HYC LG Y CSC GY L +KH C A
Sbjct: 132 PCDHYCHXYLGGYYCSCRVGYILHQNKHTCSA 163
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 452 VNECNVSHGGQL-CAHECIDLKIGYKCACRKGYQVHPEDKHLC 493
V+EC S G + C H C GY C+CR GY +H ++KH C
Sbjct: 120 VDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILH-QNKHTC 161
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 495 DTNECLDRP-----CSHYCRNTLGSYSCSCAPGYALLSDKHGCKATS 536
D +EC P C H+C N LG + CSC GY L +K C S
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 452 VNECNVSHG-GQLCAHECIDLKIGYKCACRKGYQVHPEDKHLC 493
++EC V+ G C H C + G+ C+CR GY +H +K C
Sbjct: 124 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLH-RNKRTC 165
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 68 CGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHC 102
C FHC G CIH + RCD PDC D SDE +C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
C+ FEF C S G+CI +W CDG DC DKSDE
Sbjct: 2 CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDE 33
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
C F C + +CI +WRCDG PDC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 1094 CSESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
CS EF C +G+CI + C+G DC D SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 18/35 (51%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
CS F C +G CI CD DC D SDEE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 293 CMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
C F CL+G C+ ++ CDG DC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 112 PLMTNPIHCNFTSACIEESYICDGQNDCFDMSDEQNC 148
P HC + CI S+ CDG DC D SDE+NC
Sbjct: 1 PCSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1012 CGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
C C +G CI +W+CDG DC ++ DE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC 1246
C F C + +CIH CDG +C D SDE +C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 1132 CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCT 1168
CS EF C CI S CDG DC D SDE NC
Sbjct: 2 CSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 332 LVWKCLNGRCLLENYYCDGENDCGDNSDE 360
+ CL+G C+ ++ CDG DC D SDE
Sbjct: 5 FEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 885 QFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCV 923
+FHCL G+ C+H + CDG +C D SDE +C
Sbjct: 6 EFHCLSGE-------CIHSSWRCDGGPDCKDKSDEENCA 37
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 464 CAH-ECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPG 522
C H CID + C CR G++ + + + C+HYC +G CSCAPG
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 75
Query: 523 YALLSDKHGCKATSDVP 539
Y L D C P
Sbjct: 76 YKLGDDLLQCHPAVKFP 92
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 1135 NEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
+F+C C+ LVC+GD DC DGSDE +C
Sbjct: 68 QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 1005 ADCTSQT-------CGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDP 1057
A C+S T CG D+ +TGRC+ + C+GD DC + DE C D D
Sbjct: 52 ASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDE-DDCEDVRAIDED- 109
Query: 1058 TYFKCNNYKCIPGS 1071
C+ Y+ IPGS
Sbjct: 110 ----CSQYEPIPGS 119
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 1217 FKCKNNKCIHRYAM----CDGIDNCGDNSDESHCPSIKLCSEA-----NFKCA-NGNCIK 1266
F C++ K HR + G GD D++ C S C +F+C G C+K
Sbjct: 21 FPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLK 80
Query: 1267 KELECDQYNDCGDNSDEEGCDSPLCKFRTCSQ 1298
+ L C+ DC D SDE+ C+ CSQ
Sbjct: 81 RHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ 112
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 253 EFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVE 291
+F+C TG+C+ VC+G DC+D SDE +D ++
Sbjct: 69 DFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAID 107
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 118 IHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDV 154
C T C++ +C+G DC D SDE +C+ ++ +
Sbjct: 70 FQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAI 106
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 195 DEMNCDTESTCKAN---NNVFQCDNNKTCISKSWVCDGTYDCTDRSDEN 240
D+ +C + +TC FQC C+ + VC+G DC D SDE+
Sbjct: 50 DQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDED 98
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 30 DCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCST---------CGNDTFHC-DMGM 79
DC P K ++ +L + GD D+A CS+ CG D F C + G
Sbjct: 19 DCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQD-FQCKETGR 77
Query: 80 CIHKALRCDVDPDCPDASDEMHC 102
C+ + L C+ D DC D SDE C
Sbjct: 78 CLKRHLVCNGDQDCLDGSDEDDC 100
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 340 RCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTH----FEC-QNGNCIPSVLLCNGVND 394
R LL+ G GD D+ T C F+C + G C+ L+CNG D
Sbjct: 31 RSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQD 90
Query: 395 CDDNSDED 402
C D SDED
Sbjct: 91 CLDGSDED 98
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 819 LLKPNGHRQCACPDNFILE---SDGKTCRHNCSAGQ-FLCEKTMKCIPFWWKCDTQDDCG 874
LL+PN C + + S TC GQ F C++T +C+ C+ DC
Sbjct: 33 LLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCL 92
Query: 875 DKSDEHD---------QCPQFHCLPG 891
D SDE D C Q+ +PG
Sbjct: 93 DGSDEDDCEDVRAIDEDCSQYEPIPG 118
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 463 LCAH-ECIDLKIGYKCACRKGYQVHPEDKHLCVDTNEC-LDRPCSH-YCRNTLGSYSCSC 519
+C H +CI+ Y+C C GY + + CVDT+EC + PC + C+N +G + C+C
Sbjct: 13 VCKHGQCINTDGSYRCECPFGYILAGNE---CVDTDECSVGNPCGNGTCKNVIGGFECTC 69
Query: 520 APGY 523
G+
Sbjct: 70 EEGF 73
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 452 VNECNVSHGGQLCAH--ECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSH--Y 507
V+EC++ G C H +CI+ ++C C +GY P + +D NEC+ PC +
Sbjct: 5 VDECSL--GANPCEHAGKCINTLGSFECQCLQGY-TGPRCE---IDVNECVSNPCQNDAT 58
Query: 508 CRNTLGSYSCSCAPGY 523
C + +G + C C PGY
Sbjct: 59 CLDQIGEFQCICMPGY 74
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 468 CIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSH--YCRNTLGSYSCSCAPGYA 524
C+D ++C C GY E H V+T+EC PC H C + + + C C G+
Sbjct: 59 CLDQIGEFQCICMPGY----EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 113
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 452 VNECNVSHGGQLCAH--ECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSH--Y 507
V+EC++ G C H +CI+ ++C C +GY P + +D NEC+ PC +
Sbjct: 3 VDECSL--GANPCEHAGKCINTLGSFECQCLQGY-TGPRCE---IDVNECVSNPCQNDAT 56
Query: 508 CRNTLGSYSCSCAPGY 523
C + +G + C C PGY
Sbjct: 57 CLDQIGEFQCICMPGY 72
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 468 CIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSH--YCRNTLGSYSCSCAPGYA 524
C+D ++C C GY E H V+T+EC PC H C + + + C C G+
Sbjct: 57 CLDQIGEFQCICMPGY----EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 111
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 1137 FKCSHPAHCISSDLVCDGDTDCWDGSDEANCT---TKCKPNM 1175
F C+ C++ L+C+GD DC D SDEANC KC+ M
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEM 112
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 377 CQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKH 417
Q G C+ LLCNG NDC D SDE A CR + C+H
Sbjct: 74 AQTGRCVNRRLLCNGDNDCGDQSDE----ANCRRIYKKCQH 110
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 1099 FRCAN-GKCIRPHYVCNGENDCADHSDEINCN 1129
F CA G+C+ +CNG+NDC D SDE NC
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR 102
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 421 FLCSN-GLCINETLTCNDINDCGDNSDEFSC 450
F+C+ G C+N L CN NDCGD SDE +C
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 120 CNFTSACIEESYICDGQNDCFDMSDEQNCDQI 151
C T C+ +C+G NDC D SDE NC +I
Sbjct: 73 CAQTGRCVNRRLLCNGDNDCGDQSDEANCRRI 104
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 295 EGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
EG+ GRC+ C+G+NDCGD SDE
Sbjct: 69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDE 98
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 1207 CAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSI 1249
C G C + +C++R +C+G ++CGD SDE++C I
Sbjct: 68 CEGFVC------AQTGRCVNRRLLCNGDNDCGDQSDEANCRRI 104
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 1256 NFKCAN-GNCIKKELECDQYNDCGDNSDEEGC 1286
F CA G C+ + L C+ NDCGD SDE C
Sbjct: 70 GFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 338 NGRCLLENYYCDGENDCGDNSDE 360
GRC+ C+G+NDCGD SDE
Sbjct: 76 TGRCVNRRLLCNGDNDCGDQSDE 98
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 841 KTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
+ CR F+C +T +C+ C+ +DCGD+SDE
Sbjct: 60 RPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDE 98
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 34 GYFKCDNNKCILSSHTCNNINDCGDGSDEADC 65
G+ +C+ CN NDCGD SDEA+C
Sbjct: 70 GFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues 130-14
Length = 80
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 1171 CKPNMFTC-ANHQCISLNWRCDGEPDCSDNSDEIESICAG 1209
C P+ F+C H C+ W CDG+ DC+D +D ESI AG
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGAD--ESIAAG 46
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCL 288
C F C T C+P W+CDG DC D +DE + CL
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL 48
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 1009 SQTCGPDYIRC-DTGRCIPKTWQCDGDVDCPNREDE 1043
+TCGP C T C+P+ W CDGD DC + DE
Sbjct: 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDEN 240
F C C+ + W+CDG DC D +DE+
Sbjct: 14 FSCPGTHVCVPERWLCDGDKDCADGADES 42
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEA 1165
+C + F C C+ +CDGD DC DG+DE+
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 42
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 839 DGKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
+GKTC F C T C+P W CD DC D +DE
Sbjct: 5 EGKTC----GPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 288 LNVETCMEGYFKCLNGR-CLLENYYCDGENDCGDNSDEPIVS 328
L +TC F C C+ E + CDG+ DC D +DE I +
Sbjct: 4 LEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 45
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
Length = 40
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 1011 TCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPP 1045
TCGP +C++ CIP+ W CD D DC + DE P
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 35
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 20/39 (51%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAG 1209
C P F C + CI W CD +PDC D SDE C G
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRG 40
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEM 100
TCG +F C+ CI + CD DPDC D SDE
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 34
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDE 62
C P F+C+++ CI C+N DC DGSDE
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
C F+CNS+ CIP W CD DC D SDE
Sbjct: 2 CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDE 33
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDENSTYC 244
FQC N+ TCI + W CD DC D SDE C
Sbjct: 7 FQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRC 38
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 468 CIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSHYCRNTLGSYSCSC--APGYAL 525
C ++ ++C C +GY+ + + K C D +EC + C+ C N G Y+C C G+ L
Sbjct: 18 CKNIPGDFECECPEGYRYNLKSKS-CEDIDECSENMCAQLCVNYPGGYTCYCDGKKGFKL 76
Query: 526 LSDKHGCKATS 536
D+ C+ S
Sbjct: 77 AQDQKSCEVVS 87
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCV 923
C P +FQC++ C+H + CD +C DMSDE+ CV
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV 38
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHC 102
TC D F C G CIH + +CD + DC D SDE+ C
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
C F+C++GNCI +CD+ DC D SDE GC
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 1094 CSESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
C EF+C++G CI C+ E DC D SDE+ C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEI 1203
C+P+ F C++ CI + +CD E DC D SDE+
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEV 35
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC 65
CRP F+C + CI S C+ DC D SDE C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 1011 TCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
TC PD +C G CI + QCD + DC + DE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 1211 ACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC 1246
C P+ F+C + CIH CD +C D SDE C
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 417 HPSHFLCSNGLCINETLTCNDINDCGDNSDEFSCF 451
P F CS+G CI+ + C+ DC D SDE C
Sbjct: 4 RPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV 38
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 27/109 (24%)
Query: 434 TCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQ-------VH 486
TC+DIN+C S + SC G+ +C + + Y C C GY+
Sbjct: 40 TCDDINECATLS-KVSC----------GKF--SDCWNTEGSYDCVCSPGYEPVSGAKTFK 86
Query: 487 PEDKHLCVDTNECLDRP----CSHYCRNTLGSYSCSCAPGYALLSDKHG 531
E ++ C D +EC S C NT+GSYSC C PG+ +HG
Sbjct: 87 NESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWK---PRHG 132
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 477 CACRKGYQVHPE----DKHLCVDTNECL---DRPCSHY--CRNTLGSYSCSCAPGYALLS 527
C C G+ E C D NEC C + C NT GSY C C+PGY +S
Sbjct: 21 CRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVS 80
Query: 528 DKHGCKATSD 537
K S+
Sbjct: 81 GAKTFKNESE 90
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCL 288
C F C T C+P W+CDG DC D +DE + CL
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL 46
Score = 37.7 bits (86), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 1171 CKPNMFTC-ANHQCISLNWRCDGEPDCSDNSDEIESICAG 1209
C P+ F+C H C+ W CDG+ DC+D +D ESI AG
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGAD--ESIAAG 44
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 1009 SQTCGPDYIRC-DTGRCIPKTWQCDGDVDCPNREDE 1043
+TCGP C T C+P+ W CDGD DC + DE
Sbjct: 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 838 SDGKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
S+GKTC + F C T C+P W CD DC D +DE
Sbjct: 2 SEGKTCGPS----SFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDEN 240
F C C+ + W+CDG DC D +DE+
Sbjct: 12 FSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEA 1165
+C + F C C+ +CDGD DC DG+DE+
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 291 ETCMEGYFKCLNGR-CLLENYYCDGENDCGDNSDEPIVS 328
+TC F C C+ E + CDG+ DC D +DE I +
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 37.4 bits (85), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPS 1248
CE ++F+C+N +CI CD D+C D+SDE CP
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 1168 TTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
+C+ + F C N +CI WRCD + DC D+SDE
Sbjct: 5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 846 NCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQ 885
C QF C + +CIP W+CD DDC D SDE D CP+
Sbjct: 7 ECEKDQFQC-RNERCIPSVWRCDEDDDCLDHSDE-DDCPK 44
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 1092 RNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
+ C + +F+C N +CI + C+ ++DC DHSDE +C
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 363 SCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDED 402
S P +C+ F+C+N CIPSV C+ +DC D+SDED
Sbjct: 2 SGPAKECEKD-QFQCRNERCIPSVWRCDEDDDCLDHSDED 40
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 18/36 (50%)
Query: 68 CGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCP 103
C D F C CI RCD D DC D SDE CP
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1009 SQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
++ C D +C RCIP W+CD D DC + DE
Sbjct: 5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 28 MRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC 65
++C F+C N +CI S C+ +DC D SDE DC
Sbjct: 5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1250 KLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
K C + F+C N CI CD+ +DC D+SDE+ C
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 247 SECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
EC +F+C + +CIP W CD DC+D SDE
Sbjct: 6 KECEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDE 39
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 290 VETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
+ C + F+C N RC+ + CD ++DC D+SDE
Sbjct: 5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 884 PQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHC 922
P C QFQC N +C+ CD ++C D SDE C
Sbjct: 4 PAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 66 STCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHC 102
+TC D F C G CIH + +CD + DC D SDE+ C
Sbjct: 2 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCV 923
C P +FQC++ C+H + CD +C D+SDE+ CV
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGCV 39
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 1249 IKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
+ C F+C++GNCI +CD+ DC D SDE GC
Sbjct: 1 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 1094 CSESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
C EF+C++G CI C+ E DC D SDE+ C
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 1168 TTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEI 1203
C+P+ F C++ CI + +CD E DC D SDE+
Sbjct: 1 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEV 36
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC 65
CRP F+C + CI S C+ DC D SDE C
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 1011 TCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
TC PD +C G CI + QCD + DC + DE
Sbjct: 3 TCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDE 35
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 1211 ACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC 1246
C P+ F+C + CIH CD +C D SDE C
Sbjct: 3 TCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 417 HPSHFLCSNGLCINETLTCNDINDCGDNSDEFSCF 451
P F CS+G CI+ + C+ DC D SDE C
Sbjct: 5 RPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGCV 39
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 462 QLCAH--ECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR---PCSHYCRNTLGSYS 516
Q C H C D GY C C GY E + + NEC C H+C SY+
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 517 CSCAPGYALLSDKHGC 532
CSCA GY L D C
Sbjct: 67 CSCAQGYRLGEDHKQC 82
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 464 CAHECIDLKIG-YKCACRKGYQVHPEDKHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPG 522
C H IG + C CR G++ + + + C+HYC +G CSCAPG
Sbjct: 23 CGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 82
Query: 523 YALLSDKHGCKATSDVP 539
Y L D C P
Sbjct: 83 YKLGDDLLQCHPAVKFP 99
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 788 KPMDLRV-----YHPYRQTPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKT 842
+PM +V Y Y+Q + NN G G L P A P NF GKT
Sbjct: 798 QPMSRQVVDDTKYKDYQQVGILHQ--HNNSGFVGY--LAPTMREGQAYPANFPYPLIGKT 853
Query: 843 CRHNCSAGQFLCEKTMKCIPF 863
+ + +FLC++T+ IPF
Sbjct: 854 AVDSITQKKFLCDRTLWRIPF 874
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 788 KPMDLRV-----YHPYRQTPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKT 842
+PM +V Y Y+Q + NN G G L P A P NF GKT
Sbjct: 799 QPMSRQVVDDTKYKDYQQVGILHQ--HNNSGFVGY--LAPTMREGQAYPANFPYPLIGKT 854
Query: 843 CRHNCSAGQFLCEKTMKCIPF 863
+ + +FLC++T+ IPF
Sbjct: 855 AVDSITQKKFLCDRTLWRIPF 875
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQ-----VHPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAP 521
C D Y C C ++ H +D+ +CV+ N C YC + G+ SC C
Sbjct: 61 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNEN----GGCEQYCSDHTGTKRSCRCHE 116
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 117 GYSLLADGVSCTPTVEYP 134
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQ-----VHPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAP 521
C D Y C C ++ H +D+ +CV+ N C YC + G+ SC C
Sbjct: 61 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENG----GCEQYCSDHTGTKRSCRCHE 116
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 117 GYSLLADGVSCTPTVEYP 134
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQ-----VHPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAP 521
C D Y C C ++ H +D+ +CV+ N C YC + G+ SC C
Sbjct: 61 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENG----GCEQYCSDHTGTKRSCRCHE 116
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 117 GYSLLADGVSCTPTVEYP 134
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of Tva
Length = 47
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 1168 TTKCKPNMFTC-----ANHQCISLNWRCDGEPDCSDNSDE 1202
+++C P F C A+ +C +W CDG PDC D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 1132 CSKNEFKCSHP----AHCISSDLVCDGDTDCWDGSDEANCTTK 1170
C +F+CS P C D +CDG DC DG DE C T
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 247 SECNLFEFRCN----STGQCIPITWVCDGVTDCIDKSDE 281
S C +FRC+ + G+C P W+CDG DC D DE
Sbjct: 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 1093 NCSESEFRC-----ANGKCIRPHYVCNGENDCADHSDEINCNIS 1131
C +FRC A+G+C ++C+G DC D DE C S
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 927 CLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
C QF+C P G C CDGHPDC G DE C
Sbjct: 5 CPPGQFRCSEPP--GAHGECYPQDWLCDGHPDCDDGRDEWGC 44
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQ-----VHPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAP 521
C D Y C C ++ H +D+ +CV+ N C YC + G+ SC C
Sbjct: 61 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENG----GCEQYCSDHTGTKRSCRCHE 116
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 117 GYSLLADGVSCTPTVEYP 134
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQ-----VHPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAP 521
C D Y C C ++ H +D+ +CV+ N C YC + G+ SC C
Sbjct: 14 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNEN----GGCEQYCSDHTGTKRSCRCHE 69
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 70 GYSLLADGVSCTPTVEYP 87
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQ-----VHPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAP 521
C D Y C C ++ H +D+ +CV+ N C YC + G+ SC C
Sbjct: 20 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNEN----GGCEQYCSDHTGTKRSCRCHE 75
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 76 GYSLLADGVSCTPTVEYP 93
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQ-----VHPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAP 521
C D Y C C ++ H +D+ +CV+ N C YC + G+ SC C
Sbjct: 13 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNEN----GGCEQYCSDHTGTKRSCRCHE 68
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 69 GYSLLADGVSCTPTVEYP 86
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 924 DYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQCDV 982
D +C + +C D Q CIS L CDGH DC GEDE DC ++F DV
Sbjct: 52 DPSCDEHEHQCGGDDPQ-----CISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDV 105
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 1131 SCSKNEFKCS-HPAHCISSDLVCDGDTDCWDGSDEANCTTKCK 1172
SC ++E +C CIS VCDG DC +G DE +CT K
Sbjct: 54 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTK 96
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQ-----VHPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAP 521
C D Y C C ++ H +D+ +CV+ N C YC + G+ SC C
Sbjct: 13 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENG----GCEQYCSDHTGTKRSCRCHE 68
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 69 GYSLLADGVSCTPTVEYP 86
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 1023 RCIPKTWQCDGDVDCPNREDE 1043
RCIP+ W+CDG VDC N DE
Sbjct: 20 RCIPQFWRCDGQVDCDNGSDE 40
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 847 CSAGQFLCE-KTMKCIPFWWKCDTQDDCGDKSDEH 880
C +G F C + +CIP +W+CD Q DC + SDE
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ 41
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1168 TTKCKPNMFTCANH--QCISLNWRCDGEPDCSDNSDE 1202
+ CK F+C +CI WRCDG+ DC + SDE
Sbjct: 4 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1171 CKPNMFTCANH--QCISLNWRCDGEPDCSDNSDE 1202
C+ + +C H QCI ++WRCDGE DC DE
Sbjct: 3 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 36
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 249 CNLFEFRCNS-TGQCIPITWVCDGVTDCIDKSDE 281
C + E C + + QCIP++W CDG DC DE
Sbjct: 3 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 36
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 1010 QTCGPDYIRCD--TGRCIPKTWQCDGDVDCPNREDE 1043
+TC I C + +CIP +W+CDG+ DC + EDE
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 36
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1) Receptor
Ldla Module
Length = 43
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
CS G F C KC+P C+ DDCG+++DE
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 31 CRPGYFKCDN-NKCILSSHTCNNINDCGDGSDEADCS 66
C GYF C N KC+ CN ++DCG+ +DE +C
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 374 HFECQN-GNCIPSVLLCNGVNDCDDNSDED 402
+F C N C+P +L CNGV+DC + +DED
Sbjct: 11 YFPCGNITKCLPQLLHCNGVDDCGNQADED 40
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 1210 LACEPNRFKCKN-NKCIHRYAMCDGIDNCGDNSDESHC 1246
+ C F C N KC+ + C+G+D+CG+ +DE +C
Sbjct: 5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 248 ECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
+C+L F C + +C+P C+GV DC +++DE
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1171 CKPNMFTCANH--QCISLNWRCDGEPDCSDNSDE 1202
C+ + +C H QCI ++WRCDGE DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 249 CNLFEFRCNS-TGQCIPITWVCDGVTDCIDKSDE 281
C + E C + + QCIP++W CDG DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 1023 RCIPKTWQCDGDVDCPNREDE 1043
+CIP +W+CDG+ DC + EDE
Sbjct: 14 QCIPVSWRCDGENDCDSGEDE 34
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding Domain
Of Tva
Length = 47
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 1131 SCSKNEFKCSHP----AHCISSDLVCDGDTDCWDGSDEANC 1167
SC +F+CS P C D +CDG DC DG DE C
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 1170 KCKPNMFTC-----ANHQCISLNWRCDGEPDCSDNSDE 1202
C P F C A+ +C +W CDG PDC D DE
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 249 CNLFEFRCN----STGQCIPITWVCDGVTDCIDKSDE 281
C +FRC+ + G+C P W+CDG DC D DE
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
+C QF+C P G C CDGHPDC G DE C
Sbjct: 6 SCPPGQFRCSEPP--GAHGECYPQDWLCDGHPDCDDGRDEWGC 46
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 598 NNSQPELLFPATS-PDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRG 656
+N+Q L F + P+GL VD G +Y D+G + + + + VL GL +P G
Sbjct: 96 SNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG 154
Query: 657 IALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTI 703
+A++ + G +Y TD N + K + + +N V+ +++ P + +
Sbjct: 155 VAVDNS-GNVYVTD-TDNNRVVKLEAESNNQVVLPFTDITAPWGIAV 199
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein
pdb|1Y89|B Chain B, Crystal Structure Of Devb Protein
Length = 238
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 666 MYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDL 725
+ ++ GQ HI + GS PK + S P A I ++ +WGD E +A D
Sbjct: 22 LAYSQQGQPVHISLS--GGSTPKXLFKLLASQPYANDIQWKNLHFWWGD--ERCVAPDDA 77
Query: 726 N---GENIKIIVSRRMDPTINLHHVFA 749
GE ++ S+ P N+H +
Sbjct: 78 ESNYGEANALLFSKINXPAQNIHRILG 104
>pdb|1KLI|L Chain L, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|L Chain L, Crystal Structure Of Uninhibited Factor Viia
Length = 69
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 486 HPEDKHLCVDTNECLDRPCSHYCRNTLGS-YSCSCAPGYALLSDKHGCKATSDVP 539
H +D+ +CV+ N C YC + G+ SC C GY+LL+D C T + P
Sbjct: 1 HKDDQLICVNENG----GCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 51
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 476 KCACRKGYQVHPEDKHLCVDTNECLDRP-CSHYCRNTLGSYSCSCAPGYAL 525
C C +GY + +D +C D +EC + CS C N G++ C C P AL
Sbjct: 62 SCECPEGYIL--DDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSAL 110
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 476 KCACRKGYQVHPEDKHLCVDTNECLDRP-CSHYCRNTLGSYSCSCAPGYAL 525
C C +GY + +D +C D +EC + CS C N G++ C C P AL
Sbjct: 62 SCECPEGYIL--DDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSAL 110
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 494 VDTNECLDRP--CSHYCRNTLGSYSCSCAPGYALLSDKHGCKAT 535
D NECLD S C NT GSY C C P + L + GC T
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDT 44
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 475 YKCACRKGYQVHPEDKHLCV-DTNECLDRPC---SHYCRNTLGSYSCSCAPGYALLSDKH 530
YK C G P + + D +EC + P C NT GS+ C C GY L D
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTR 159
Query: 531 GC 532
C
Sbjct: 160 VC 161
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 494 VDTNECLDRP--CSHYCRNTLGSYSCSCAPGYALLSDKHGCKAT 535
D NECLD S C NT GSY C C P + L + GC T
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDT 44
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 475 YKCACRKGYQVHPEDKHLCV-DTNECLDRPC---SHYCRNTLGSYSCSCAPGYALLSDKH 530
YK C G P + + D +EC + P C NT GS+ C C GY L D
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTR 159
Query: 531 GC 532
C
Sbjct: 160 VC 161
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 495 DTNECLDRPCSH--YCRNTLGSYSCSCAPGY 523
D NEC+ PC + C + +G + C C PGY
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGY 31
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 477 CACRKGYQVHPEDKHLCVDTNECL-DRPCS---HYCRNTLGSYSCSCAPGYALLSDKHGC 532
C+C G +PED+ C T E C+ C+N G Y C C G+ +K+ C
Sbjct: 118 CSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTFDKEKNVC 177
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 504 CSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVP 539
C +CR CSCA GY L D C +T P
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP 43
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 467 ECIDLKIGYKCACRKGYQVH-PEDKHLCVDTNECLDRPCSHY--CRNTLGSYSCSCAPGY 523
+C+++ I A K H + KH T C D CS C T+G+Y+CSC PG+
Sbjct: 89 DCVEIYIKSPSAPGKWNDEHCLKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGF 148
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 504 CSHYCRNTLGSYSCSCAPGYALLSDKHGC 532
C H+C SY+CSCA GY L D C
Sbjct: 13 CQHFCLPGQESYTCSCAQGYRLGEDHKQC 41
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 1024 CIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWH 1073
CI CDG DC N DE P CD + K N +WH
Sbjct: 67 CISDLLVCDGHKDCHNAHDEDPDV-------CDTSVVKAGNVFSGTSTWH 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,180,742
Number of Sequences: 62578
Number of extensions: 2204402
Number of successful extensions: 5435
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 3604
Number of HSP's gapped (non-prelim): 1121
length of query: 1416
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1305
effective length of database: 8,027,179
effective search space: 10475468595
effective search space used: 10475468595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)