RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6572
(1416 letters)
>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat
class B. This domain is also known as the YWTD motif
after the most conserved region of the repeat. The YWTD
repeat is found in multiple tandem repeats and has been
predicted to form a beta-propeller structure.
Length = 42
Score = 60.3 bits (147), Expect = 1e-11
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 664 GYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTI 703
G +YWTD A I A ++GS+ + + S++L WPN + +
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAV 40
Score = 42.9 bits (102), Expect = 1e-05
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 621 RNLYWCDKGLD-TIEVAKLDGRFRKVLINKGLQEPRGIALNP 661
LYW D L +I VA L+G R+ L ++ LQ P GIA++P
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
Score = 33.3 bits (77), Expect = 0.038
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 708 NELFWGDAHED-YIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFE 754
L+W D+ I+V+DLNG + + + S +L +AV
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSE------DLQWPNGIAVDP 42
Score = 32.1 bits (74), Expect = 0.090
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 755 DHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYH 796
L+WTD +++ G + ++ + P + V
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain. Type
"B" repeats in low-density lipoprotein (LDL) receptor
that plays a central role in mammalian cholesterol
metabolism. Also present in a variety of molecules
similar to gp300/megalin.
Length = 43
Score = 56.1 bits (136), Expect = 4e-10
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 611 PDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFR 643
P+GL VDW+ LYW D GLD IEVA LDG R
Sbjct: 11 PNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Score = 55.3 bits (134), Expect = 6e-10
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 644 KVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSN 686
+ L++ GL P G+A++ G +YWTDWG I A +DG+N
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTN 42
Score = 48.8 bits (117), Expect = 1e-07
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 688 KVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGEN 729
+ ++S L PN L + + L+W D D I V++L+G N
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
Score = 44.5 bits (106), Expect = 5e-06
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 743 NLHHVFALAV--FEDHLFWTDWEMKSIERCDKYTGKNC 778
L H LAV E L+WTDW + IE + G N
Sbjct: 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTNR 43
Score = 33.7 bits (78), Expect = 0.027
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 560 TIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRS 596
T+ + GL DW++ LYW+D + I +
Sbjct: 2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLD--VIEVA 36
>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a
cysteine-rich repeat that plays a central role in
mammalian cholesterol metabolism; the receptor protein
binds LDL and transports it into cells by endocytosis; 7
successive cysteine-rich repeats of about 40 amino acids
are present in the N-terminal of this multidomain
membrane protein; other homologous domains occur in
related receptors, including the very low-density
lipoprotein receptor and the LDL receptor-related
protein/alpha 2-macroglobulin receptor, and in proteins
which are functionally unrelated, such as the C9
component of complement; the binding of calcium is
required for in vitro formation of the native disulfide
isomer and is necessary in establishing and maintaining
the modular structure.
Length = 35
Score = 55.3 bits (134), Expect = 6e-10
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 1055 CDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNC 1089
C P F+C N +CIP SW CD +DDCGDGSDE+NC
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 52.6 bits (127), Expect = 5e-09
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 1094 CSESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
C +EFRCANG+CI +VC+GE+DC D SDE NC
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 51.1 bits (123), Expect = 2e-08
Identities = 20/32 (62%), Positives = 22/32 (68%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
C PN F CAN +CI +W CDGE DC D SDE
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Score = 49.5 bits (119), Expect = 7e-08
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC 1246
C PN F+C N +CI +CDG D+CGD SDE +C
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 47.6 bits (114), Expect = 3e-07
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 160 CSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNC 199
C ++F C NG CI S W CDG++DC DG SDE NC
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDG-----SDEENC 35
Score = 47.6 bits (114), Expect = 3e-07
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC 65
C P F+C N +CI SS C+ +DCGDGSDE +C
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 45.7 bits (109), Expect = 1e-06
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHC 922
C P +F+C N +C+ + +CDG ++CGD SDE +C
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 45.7 bits (109), Expect = 2e-06
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
C F+CANG CI CD +DCGD SDEE C
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 45.3 bits (108), Expect = 2e-06
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 1012 CGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
C P+ RC GRCIP +W CDG+ DC + DE
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Score = 44.1 bits (105), Expect = 5e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 68 CGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHC 102
C + F C G CI + CD + DC D SDE +C
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 43.3 bits (103), Expect = 9e-06
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHH 283
C EFRC + G+CIP +WVCDG DC D SDE +
Sbjct: 1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEEN 34
Score = 43.0 bits (102), Expect = 1e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 293 CMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
C F+C NGRC+ ++ CDGE+DCGD SDE
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Score = 43.0 bits (102), Expect = 1e-05
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 1132 CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
C NEF+C++ CI S VCDG+ DC DGSDE NC
Sbjct: 1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35
Score = 42.2 bits (100), Expect = 2e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 372 STHFECQNGNCIPSVLLCNGVNDCDDNSDED 402
F C NG CIPS +C+G +DC D SDE+
Sbjct: 3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Score = 41.0 bits (97), Expect = 6e-05
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHD 881
C +F C +CIP W CD +DDCGD SDE +
Sbjct: 1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDEEN 34
Score = 40.3 bits (95), Expect = 1e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 417 HPSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
P+ F C+NG CI + C+ +DCGD SDE +C
Sbjct: 2 PPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 38.7 bits (91), Expect = 4e-04
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDEN 240
F+C N + CI SWVCDG DC D SDE
Sbjct: 6 FRCANGR-CIPSSWVCDGEDDCGDGSDEE 33
Score = 37.6 bits (88), Expect = 0.001
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 973 CTANEFQC-DVKCISLALVCDKVFDCLDRSDE 1003
C NEF+C + +CI + VCD DC D SDE
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Score = 36.8 bits (86), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDE 360
++C NGRC+ ++ CDGE+DCGD SDE
Sbjct: 6 FRCANGRCIPSSWVCDGEDDCGDGSDE 32
Score = 36.0 bits (84), Expect = 0.003
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 927 CLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
C +F+C CI CDG DC G DE +C
Sbjct: 1 CPPNEFRCA-------NGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 34.5 bits (80), Expect = 0.012
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 126 CIEESYICDGQNDCFDMSDEQNC 148
CI S++CDG++DC D SDE+NC
Sbjct: 13 CIPSSWVCDGEDDCGDGSDEENC 35
Score = 26.4 bits (59), Expect = 9.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 2 CIPFNQTCDRVYNCHDKSDE 21
CIP + CD +C D SDE
Sbjct: 13 CIPSSWVCDGEDDCGDGSDE 32
>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain
class A.
Length = 37
Score = 50.8 bits (122), Expect = 3e-08
Identities = 23/36 (63%), Positives = 26/36 (72%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNC 1089
TC P F+C + +CIP SW CD D DC DGSDEKNC
Sbjct: 2 TCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 49.2 bits (118), Expect = 8e-08
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 1092 RNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
C EF+C +G+CI +VC+G+ DC D SDE NC
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 48.1 bits (115), Expect = 2e-07
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 1169 TKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIE 1204
+ C P+ F C + +CI ++W CDG+PDC D SDE
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKN 36
Score = 44.6 bits (106), Expect = 4e-06
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 66 STCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHC 102
STCG D F C G CI + CD DPDC D SDE +C
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 43.8 bits (104), Expect = 7e-06
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 1011 TCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
TCGPD +C +G CIP +W CDGD DC + DE
Sbjct: 2 TCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDE 34
Score = 43.4 bits (103), Expect = 9e-06
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC 1246
C P+ F+C + +CI +CDG +C D SDE +C
Sbjct: 3 CGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 42.7 bits (101), Expect = 2e-05
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 1132 CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
C +EF+C CI VCDGD DC DGSDE NC
Sbjct: 3 CGPDEFQCGS-GECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 42.7 bits (101), Expect = 2e-05
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 247 SECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
S C EF+C S G+CIP++WVCDG DC D SDE
Sbjct: 1 STCGPDEFQCGS-GECIPMSWVCDGDPDCEDGSDE 34
Score = 42.7 bits (101), Expect = 2e-05
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 29 RDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC 65
C P F+C + +CI S C+ DC DGSDE +C
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 41.9 bits (99), Expect = 3e-05
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 160 CSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNC 199
C D+F C +G CI W CDGD DC DG SDE NC
Sbjct: 3 CGPDEFQCGSGECIPMSWVCDGDPDCEDG-----SDEKNC 37
Score = 41.9 bits (99), Expect = 3e-05
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
C F+C +G CI CD DC D SDE+ C
Sbjct: 3 CGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 40.7 bits (96), Expect = 8e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHC 922
C P +FQC + +C+ + +CDG +C D SDE +C
Sbjct: 3 CGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 39.2 bits (92), Expect = 3e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 292 TCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
TC F+C +G C+ ++ CDG+ DC D SDE
Sbjct: 2 TCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDE 34
Score = 38.4 bits (90), Expect = 6e-04
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 203 STCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE 239
STC + FQC + + CI SWVCDG DC D SDE
Sbjct: 1 STCG--PDEFQCGSGE-CIPMSWVCDGDPDCEDGSDE 34
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 374 HFECQNGNCIPSVLLCNGVNDCDDNSDED 402
F+C +G CIP +C+G DC+D SDE
Sbjct: 7 EFQCGSGECIPMSWVCDGDPDCEDGSDEK 35
Score = 35.7 bits (83), Expect = 0.005
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 418 PSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
P F C +G CI + C+ DC D SDE +C
Sbjct: 5 PDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 34.6 bits (80), Expect = 0.012
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 123 TSACIEESYICDGQNDCFDMSDEQNC 148
+ CI S++CDG DC D SDE+NC
Sbjct: 12 SGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 33.8 bits (78), Expect = 0.023
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
TC +F+C CI + CDG PDC G DE +C
Sbjct: 2 TCGPDEFQCG-------SGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 33.8 bits (78), Expect = 0.026
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDE 360
++C +G C+ ++ CDG+ DC D SDE
Sbjct: 8 FQCGSGECIPMSWVCDGDPDCEDGSDE 34
Score = 33.4 bits (77), Expect = 0.032
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 971 KNCTANEFQC-DVKCISLALVCDKVFDCLDRSDE 1003
C +EFQC +CI ++ VCD DC D SDE
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDE 34
Score = 32.7 bits (75), Expect = 0.055
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
C +F C + +CIP W CD DC D SDE
Sbjct: 3 CGPDEFQC-GSGECIPMSWVCDGDPDCEDGSDE 34
>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A.
Cysteine-rich repeat in the low-density lipoprotein (LDL)
receptor that plays a central role in mammalian
cholesterol metabolism. The N-terminal type A repeats in
LDL receptor bind the lipoproteins. Other homologous
domains occur in related receptors, including the very
low-density lipoprotein receptor and the LDL
receptor-related protein/alpha 2-macroglobulin receptor,
and in proteins which are functionally unrelated, such as
the C9 component of complement. Mutations in the LDL
receptor gene cause familial hypercholesterolemia.
Length = 33
Score = 48.8 bits (117), Expect = 1e-07
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDE 1086
TC P F+C+N +CIP SW CD DDCGDGSDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 48.4 bits (116), Expect = 2e-07
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 1170 KCKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
C P F C N +CI +W CDG DC D SDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 45.7 bits (109), Expect = 1e-06
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 1094 CSESEFRCANGKCIRPHYVCNGENDCADHSDE 1125
C EF+C NG+CI +VC+G +DC D SDE
Sbjct: 2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 44.5 bits (106), Expect = 4e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 1011 TCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
TC P +CD GRCIP +W CDG DC + DE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 42.6 bits (101), Expect = 2e-05
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDE 1243
C P F+C N +CI +CDG+D+CGD SDE
Sbjct: 2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 42.6 bits (101), Expect = 2e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 292 TCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
TC G F+C NGRC+ ++ CDG +DCGD SDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 41.9 bits (99), Expect = 3e-05
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 160 CSGDKFLCRNGNCILSRWRCDGDNDCNDGND 190
C +F C NG CI S W CDG +DC DG+D
Sbjct: 2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSD 32
Score = 41.9 bits (99), Expect = 3e-05
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDE 62
C PG F+CDN +CI SS C+ ++DCGDGSDE
Sbjct: 2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 41.5 bits (98), Expect = 4e-05
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 248 ECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
C EF+C++ G+CIP +WVCDGV DC D SDE
Sbjct: 1 TCPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33
Score = 41.1 bits (97), Expect = 5e-05
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 371 NSTHFECQNGNCIPSVLLCNGVNDCDDNSDE 401
F+C NG CIPS +C+GV+DC D SDE
Sbjct: 3 PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 41.1 bits (97), Expect = 7e-05
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDE 919
C PG+FQC+N +C+ + +CDGV++CGD SDE
Sbjct: 2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 40.7 bits (96), Expect = 7e-05
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDE 1283
C F+C NG CI CD +DCGD SDE
Sbjct: 2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 39.9 bits (94), Expect = 1e-04
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDE 99
TC F CD G CI + CD DC D SDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 38.8 bits (91), Expect = 3e-04
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDE 879
C G+F C +CIP W CD DDCGD SDE
Sbjct: 2 CPPGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 37.2 bits (87), Expect = 0.001
Identities = 19/28 (67%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDE 239
FQCDN + CI SWVCDG DC D SDE
Sbjct: 7 FQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
Score = 36.8 bits (86), Expect = 0.002
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 417 HPSHFLCSNGLCINETLTCNDINDCGDNSDE 447
P F C NG CI + C+ ++DCGD SDE
Sbjct: 3 PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 36.5 bits (85), Expect = 0.002
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1132 CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDE 1164
C EF+C + CI S VCDG DC DGSDE
Sbjct: 2 CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
Score = 35.3 bits (82), Expect = 0.006
Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 973 CTANEFQCDV-KCISLALVCDKVFDCLDRSDE 1003
C EFQCD +CI + VCD V DC D SDE
Sbjct: 2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 35.3 bits (82), Expect = 0.006
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDE 360
++C NGRC+ ++ CDG +DCGD SDE
Sbjct: 7 FQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 31.1 bits (71), Expect = 0.18
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDE 965
TC +F+C CI CDG DC G DE
Sbjct: 1 TCPPGEFQCD-------NGRCIPSSWVCDGVDDCGDGSDE 33
Score = 29.5 bits (67), Expect = 0.65
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 126 CIEESYICDGQNDCFDMSDE 145
CI S++CDG +DC D SDE
Sbjct: 14 CIPSSWVCDGVDDCGDGSDE 33
>gnl|CDD|225926 COG3391, COG3391, Uncharacterized conserved protein [Function
unknown].
Length = 381
Score = 48.4 bits (115), Expect = 2e-05
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 597 CNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQEP 654
N L P G+ V+ G +Y +T+ V +D VL I GL P
Sbjct: 62 SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSV--IDTATNTVLGSIPVGLG-P 118
Query: 655 RGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSW-PNALTISYETNELFWG 713
G+A++P Y+Y + G + +N KV + + P + + + N+++
Sbjct: 119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIPVGNTPTGVAVDPDGNKVYVT 177
Query: 714 DAHEDYIAVSDLNGENIK 731
++ ++ ++V D +G ++
Sbjct: 178 NSDDNTVSVIDTSGNSVV 195
Score = 34.5 bits (79), Expect = 0.35
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 609 TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL---INKGLQEPRGIALNPAYGY 665
T P G+ VD G +Y + G + V K+D V + G PRG+A++PA
Sbjct: 207 TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266
Query: 666 MY 667
Y
Sbjct: 267 AY 268
>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate,
extracellular matrix molecules mediate cell-matrix and
matrix-matrix interactions thereby providing tissue
integrity. Some members of the matrilin family are
expressed specifically in developing cartilage
rudiments. The matrilin family consists of at least four
members. All the members of the matrilin family contain
VWA domains, EGF-like domains and a heptad repeat
coiled-coiled domain at the carboxy terminus which is
responsible for the oligomerization of the matrilins.
The VWA domains have been shown to be essential for
matrilin network formation by interacting with matrix
ligands.
Length = 224
Score = 43.1 bits (102), Expect = 5e-04
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 488 EDKHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPGYALLSDK 529
LC L C C +T GSY C+C GYALL D
Sbjct: 185 VVPDLC----ATLSHVCQQVCISTPGSYLCACTEGYALLEDN 222
Score = 30.4 bits (69), Expect = 5.5
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 454 ECNV-SHGGQLCAHECIDLKIGYKCACRKGYQVHPEDK 490
C SH C CI Y CAC +GY + ++K
Sbjct: 189 LCATLSHV---CQQVCISTPGSYLCACTEGYALLEDNK 223
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 34.5 bits (80), Expect = 0.014
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 495 DTNECLDR-PCSH--YCRNTLGSYSCSCAPGY 523
D +EC PC + C NT+GSY C C PGY
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY 32
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular (mostly
animal) proteins. Many of these proteins require calcium
for their biological function and calcium-binding sites
have been found to be located at the N-terminus of
particular EGF-like domains; calcium-binding may be
crucial for numerous protein-protein interactions. Six
conserved core cysteines form three disulfide bridges as
in non calcium-binding EGF domains, whose structures are
very similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 33.0 bits (76), Expect = 0.042
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 495 DTNECLDR-PCSHY--CRNTLGSYSCSCAPGY 523
D +EC PC + C NT+GSY CSC PGY
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGY 32
>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like. The
sequences found in this family are similar to a region
found in the beta-subunit of glucosidase II, which is
also known as protein kinase C substrate 80K-H (PRKCSH).
The enzyme catalyzes the sequential removal of two
alpha-1,3-linked glucose residues in the second step of
N-linked oligosaccharide processing. The beta subunit is
required for the solubility and stability of the
heterodimeric enzyme, and is involved in retaining the
enzyme within the endoplasmic reticulum.
Length = 176
Score = 35.5 bits (82), Expect = 0.081
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 1134 KNEFKC-SHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCIS----LNW 1188
+KC +H +S D V D DC DGSDE T C F CAN I
Sbjct: 35 NGNWKCLNHSEIKLSFDQVNDDYCDCPDGSDEPG-TNACSNGKFYCANEGFIPGYIPSFK 93
Query: 1189 RCDGEPD---CSDNSDEIESIC 1207
DG D C D SDE C
Sbjct: 94 VDDGVCDYDICCDGSDEALGKC 115
Score = 33.2 bits (76), Expect = 0.51
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 29/85 (34%)
Query: 1187 NWRCDGEP--------------DCSDNSDEIESICAGLACEPNRFKCKNNKCIHRY---- 1228
NW+C DC D SDE + AC +F C N I Y
Sbjct: 37 NWKCLNHSEIKLSFDQVNDDYCDCPDGSDEPGTN----ACSNGKFYCANEGFIPGYIPSF 92
Query: 1229 ----AMCDGIDNCGDNSDES--HCP 1247
+CD D C D SDE+ CP
Sbjct: 93 KVDDGVCD-YDICCDGSDEALGKCP 116
Score = 30.5 bits (69), Expect = 4.1
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 55 DCGDGSDEADCSTCGNDTFHCDMGMCIHKALR--------CDVDPDCPDASDE--MHCPM 104
DC DGSDE + C N F+C I + CD D C D SDE CP
Sbjct: 59 DCPDGSDEPGTNACSNGKFYCANEGFIPGYIPSFKVDDGVCDYDI-CCDGSDEALGKCPN 117
Query: 105 TNCTEK 110
C E
Sbjct: 118 K-CGEI 122
Score = 29.8 bits (67), Expect = 7.1
Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 1036 DCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWH--------CDYDDDCGDGSDEK 1087
DCP+ DEP + A C F C N IPG CDY D C DGSDE
Sbjct: 59 DCPDGSDEPGTNA------CSNGKFYCANEGFIPGYIPSFKVDDGVCDY-DICCDGSDEA 111
>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like. cEGF, or complement
Clr-like EGF, domains have six conserved cysteine
residues disulfide-bonded into the characteristic
pattern 'ababcc'. They are found in blood coagulation
proteins such as fibrillin, Clr and Cls, thrombomodulin,
and the LDL receptor. The core fold of the EGF domain
consists of two small beta-hairpins packed against each
other. Two major structural variants have been
identified based on the structural context of the
C-terminal cysteine residue of disulfide 'c' in the
C-terminal hairpin: hEGFs and cEGFs. In cEGFs the
C-terminal thiol resides on the C-terminal beta-sheet,
resulting in long loop-lengths between the cysteine
residues of disulfide 'c', typically C[10+]XC. These
longer loop-lengths may have arisen by selective
cysteine loss from a four-disulfide EGF template such as
laminin or integrin. Tandem cEGF domains have five
linking residues between terminal cysteines of adjacent
domains. cEGF domains may or may not bind calcium in the
linker region. cEGF domains with the consensus motif
CXN4X[F,Y]XCXC are hydroxylated exclusively on the
asparagine residue.
Length = 24
Score = 29.7 bits (68), Expect = 0.59
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 514 SYSCSCAPGYALLSDKHGCK 533
SY+CSC PGY L D C+
Sbjct: 1 SYTCSCPPGYQLSGDGRTCE 20
Score = 29.3 bits (67), Expect = 0.74
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 474 GYKCACRKGYQVHPEDKHLCVDTNE 498
Y C+C GYQ+ D C D +E
Sbjct: 1 SYTCSCPPGYQLSG-DGRTCEDIDE 24
>gnl|CDD|225333 COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport
and metabolism].
Length = 346
Score = 33.5 bits (77), Expect = 0.77
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 620 GRNLYWCDKGLDTIEVAKLD---GRFRKV-LINKGLQEPRGIALNPAYGYMY 667
GR LY ++G D+I V +D G+ V + Q PR +NP+ ++
Sbjct: 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306
>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family
protein.
Length = 1057
Score = 33.7 bits (77), Expect = 1.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 681 KMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENI 730
++ N +++ L +P L I N LF D++ + I V+DL+G I
Sbjct: 553 SLEKDNDPRLLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI 602
>gnl|CDD|214544 smart00181, EGF, Epidermal growth factor-like domain.
Length = 35
Score = 29.0 bits (65), Expect = 1.1
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 498 ECLDR-PCSH-YCRNTLGSYSCSCAPGYAL 525
EC PCS+ C NT GSY+CSC PGY
Sbjct: 1 ECASGGPCSNGTCINTPGSYTCSCPPGYTG 30
>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal
growth factor (EGF) presents in a large number of
proteins, mostly animal; the list of proteins currently
known to contain one or more copies of an EGF-like
pattern is large and varied; the functional significance
of EGF-like domains in what appear to be unrelated
proteins is not yet clear; a common feature is that
these repeats are found in the extracellular domain of
membrane-bound proteins or in proteins known to be
secreted (exception: prostaglandin G/H synthase); the
domain includes six cysteine residues which have been
shown to be involved in disulfide bonds; the main
structure is a two-stranded beta-sheet followed by a
loop to a C-terminal short two-stranded sheet;
Subdomains between the conserved cysteines vary in
length; the region between the 5th and 6th cysteine
contains two conserved glycines of which at least one
is present in most EGF-like domains; a subset of
these bind calcium.
Length = 36
Score = 28.2 bits (63), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 493 CVDTNECLDRPCSHYCRNTLGSYSCSCAPGYAL 525
C +N C + C NT GSY C C PGY
Sbjct: 2 CAASNPCSN---GGTCVNTPGSYRCVCPPGYTG 31
>gnl|CDD|220674 pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This
entry contains bacterial 6-phosphogluconolactonases
(6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse
6-phosphogluconolactone to 6-phosphogluconate. The entry
also contains the fungal muconate lactonising enzyme
carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and
muconate cycloisomerase (EC:5.5.1.1), which convert
cis,cis-muconates to muconolactones and vice versa as
part of the microbial beta-ketoadipate pathway.
Structures of proteins in this family have revealed a
7-bladed beta-propeller fold.
Length = 344
Score = 31.4 bits (72), Expect = 3.6
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLD---GRFRKV-LINKGLQEPRGIALNPAYGY 665
SPDG R LY ++G D+I V +D G V ++ PR ++P+ +
Sbjct: 252 SPDG-------RFLYVSNRGHDSIAVFAVDEAGGTLTLVERVSTEGDFPRDFNIDPSGKF 304
Query: 666 MY 667
+
Sbjct: 305 LL 306
>gnl|CDD|237072 PRK12355, PRK12355, conjugal transfer mating pair stabilization
protein TraN; Reviewed.
Length = 558
Score = 30.9 bits (70), Expect = 5.6
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 92 DCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQND---CFDMSDEQNC 148
DC D C + L NP AC S C ++ C +C
Sbjct: 301 DCWAYQDTYQCQSADTGNCATLADNP-------ACTLVSRQCAFYSNGGGCLHEEATYSC 353
Query: 149 DQIKDVSPKMNCSGDKFLCRNGNC 172
+ K M C GD F C +G+C
Sbjct: 354 PEKKTSGTVMVCGGDVF-CLDGDC 376
>gnl|CDD|205157 pfam12947, EGF_3, EGF domain. This family includes a variety of
EGF-like domain homologues. This family includes the
C-terminal domain of the malaria parasite MSP1 protein.
Length = 36
Score = 26.7 bits (60), Expect = 7.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 508 CRNTLGSYSCSCAPGY 523
C NT GS++C+C GY
Sbjct: 14 CTNTGGSFTCTCKSGY 29
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 30.6 bits (70), Expect = 7.9
Identities = 12/50 (24%), Positives = 14/50 (28%), Gaps = 12/50 (24%)
Query: 54 NDCGDGSDEADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCP 103
CG + C CG T RC P C +E C
Sbjct: 630 PSCGKETFYRRCPFCGTHTE---------PVYRC---PRCGIEVEEDECE 667
>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain.
Length = 42
Score = 26.5 bits (59), Expect = 9.2
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 495 DTNECLDR----PCSHYCRNTLGSYSCSCAPGYALLSDKHGC 532
D +EC D P + C NT+GS+ C C GY D C
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.475
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 66,078,800
Number of extensions: 6030553
Number of successful extensions: 3709
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3680
Number of HSP's successfully gapped: 156
Length of query: 1416
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1307
Effective length of database: 6,103,016
Effective search space: 7976641912
Effective search space used: 7976641912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.8 bits)