RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6572
(1416 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 435 bits (1119), Expect = e-135
Identities = 242/761 (31%), Positives = 335/761 (44%), Gaps = 69/761 (9%)
Query: 133 CDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGL 192
C ++F C++G CI +W CDG +C DG
Sbjct: 7 WTVALLLAAAGTAVGD----------RCERNEFQCQDGKCISYKWVCDGSAECQDG---- 52
Query: 193 SSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLF 252
SDE S + + CI + W CDG DC + SDE C C+
Sbjct: 53 -SDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGCPPKTCSQD 109
Query: 253 EFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGRCLLENYYC 312
EFRC+ G+CI +VCD DC+D SDE TC F+C + C+ + + C
Sbjct: 110 EFRCHD-GKCISRQFVCDSDRDCLDGSDEASCPVL----TCGPASFQCNSSTCIPQLWAC 164
Query: 313 DGENDCGDNSDE-------------PIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSD 359
D + DC D SDE + CL+G C+ ++ CDG DC D SD
Sbjct: 165 DNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSD 224
Query: 360 EPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPS 419
E C C F+C +GNCI C+ DC D SDE C+ P+
Sbjct: 225 EEN-CAVATC-RPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTL-----CEGPN 277
Query: 420 HFLCSNGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCAC 479
F C +G CI CN DC D SDE C+H C DLKIGY+C C
Sbjct: 278 KFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC 337
Query: 480 RKGYQVHPEDKHLCVDTNECLDRP-CSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDV 538
G+Q+ + C D +EC D CS C N G Y C C G+ L CKA +
Sbjct: 338 PDGFQLV--AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 395
Query: 539 PPNLLFTNKYYIREVTQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCN 598
+ T I N N V LD + N +YWSD++ I +
Sbjct: 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR--MICSTQL 453
Query: 599 NSQPELLFPAT-------SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGL 651
+ + T +PDGL VDW+ N+YW D L T+ VA G RK L +
Sbjct: 454 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 513
Query: 652 QEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELF 711
+PR I ++P +G+MYWTDWG A I K ++G + ++++N+ WPN +T+ + L+
Sbjct: 514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 573
Query: 712 WGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCD 771
W D+ I+ D+NG N K I+ L H F+LAVFED +FWTD ++I +
Sbjct: 574 WVDSKLHSISSIDVNGGNRKTILEDEK----RLAHPFSLAVFEDKVFWTDIINEAIFSAN 629
Query: 772 KYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE----NNGGCQGLCLLKP----- 822
+ TG + + +NL P D+ ++H Q P N CE +NGGCQ LCL P
Sbjct: 630 RLTGSDVNLLAENL-LSPEDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAPQINPH 687
Query: 823 NGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPF 863
+ CACPD +L D ++C A E + +
Sbjct: 688 SPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKV 728
Score = 242 bits (619), Expect = 4e-67
Identities = 122/352 (34%), Positives = 157/352 (44%), Gaps = 28/352 (7%)
Query: 989 LVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCA 1048
L C + +C G+CI W CDG +C + DE
Sbjct: 5 LRWTVALLLAAAGT----AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 60
Query: 1049 DPNLYTCDPTYFKCNNY--KCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKC 1106
TC F C +CIP W CD DC +GSDE+ C P+ CS+ EFRC +GKC
Sbjct: 61 LSV--TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKC 118
Query: 1107 IRPHYVCNGENDCADHSDEINCNI-SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEA 1165
I +VC+ + DC D SDE +C + +C F+C+ CI CD D DC DGSDE
Sbjct: 119 ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEW 177
Query: 1166 NCT-----------TKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEP 1214
+ C F C + +CI +WRCDG PDC D SDE CA C P
Sbjct: 178 PQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN--CAVATCRP 235
Query: 1215 NRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEAN-FKCANGNCIKKELECDQ 1273
+ F+C + CIH CD +C D SDE C ++ LC N FKC +G CI + C+
Sbjct: 236 DEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNM 295
Query: 1274 YNDCGDNSDEE----GCDSPLCKFRTCSQICIEKKISNTERTFSCHCAEGYH 1321
DC D SDE G + L CS +C + KI
Sbjct: 296 ARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 347
Score = 242 bits (618), Expect = 4e-67
Identities = 130/389 (33%), Positives = 167/389 (42%), Gaps = 30/389 (7%)
Query: 952 RCDGHPDCPLGEDEHDCMPKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDE-PADCTS 1009
R + C NEFQC D KCIS VCD +C D SDE C S
Sbjct: 6 RWTVALLL---AAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLS 62
Query: 1010 QTCGPDYIRCD--TGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKC 1067
TC C RCIP+ W+CDG VDC N DE TC F+C++ KC
Sbjct: 63 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE----QGCPPKTCSQDEFRCHDGKC 118
Query: 1068 IPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEIN 1127
I + CD D DC DGSDE +C C + F+C + CI + C+ + DC D SDE
Sbjct: 119 ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 178
Query: 1128 CN-----------ISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTK-CKPNM 1175
CS EF C CI S CDG DC D SDE NC C+P+
Sbjct: 179 QRCRGLYVFQGDSSPCSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDE 237
Query: 1176 FTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGID 1235
F C++ CI + +CD E DC D SDE+ + L PN+FKC + +CI +C+
Sbjct: 238 FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMAR 297
Query: 1236 NCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRT 1295
+C D SDE C NG C + +C + C+
Sbjct: 298 DCRDWSDEPIK----ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 353
Query: 1296 CSQIC--IEKKISNTERTFSCHCAEGYHM 1322
Q + N E + C C EG+ +
Sbjct: 354 ECQDPDTCSQLCVNLEGGYKCQCEEGFQL 382
Score = 238 bits (608), Expect = 8e-66
Identities = 133/412 (32%), Positives = 172/412 (41%), Gaps = 21/412 (5%)
Query: 865 WKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELH--C 922
WK + C +FQC + KC+ +CDG C D SDE C
Sbjct: 3 WKLRWTVALLLAAAGT--AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 60
Query: 923 VDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQC-D 981
+ TC + F C G + CI RCDG DC G DE C PK C+ +EF+C D
Sbjct: 61 LSVTCKSGDFSCG-----GRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD 115
Query: 982 VKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNRE 1041
KCIS VCD DCLD SDE A C TCGP +C++ CIP+ W CD D DC +
Sbjct: 116 GKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGS 174
Query: 1042 DEPP------SCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCS 1095
DE P + C F C + +CI SW CD DC D SDE+NC C
Sbjct: 175 DEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCR 234
Query: 1096 ESEFRCANGKCIRPHYVCNGENDCADHSDEINC---NISCSKNEFKCSHPAHCISSDLVC 1152
EF+C++G CI C+ E DC D SDE+ C + N+FKC H CI+ D VC
Sbjct: 235 PDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKC-HSGECITLDKVC 293
Query: 1153 DGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLAC 1212
+ DC D SDE + + + + E C D +
Sbjct: 294 NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 353
Query: 1213 EPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNC 1264
E + C++ G D + S A N +
Sbjct: 354 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 405
Score = 204 bits (519), Expect = 2e-54
Identities = 122/416 (29%), Positives = 163/416 (39%), Gaps = 41/416 (9%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKCILSSHTCNNINDCGDG 59
CI + CD C D SDE C C+ G F C N+CI C+ DC +G
Sbjct: 36 CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNG 95
Query: 60 SDEADCS--TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNP 117
SDE C TC D F C G CI + CD D DC D SDE CP+ C
Sbjct: 96 SDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGP------AS 149
Query: 118 IHCNFTSACIEESYICDGQNDCFDMSDEQNCD---QIKDVSPKMNCSGDKFLCRNGNCIL 174
CN +S CI + + CD DC D SDE CS +F C +G CI
Sbjct: 150 FQCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIH 208
Query: 175 SRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCT 234
S WRCDG DC D SDE NC +TC+ + FQC ++ CI S CD YDC
Sbjct: 209 SSWRCDGGPDCKDK-----SDEENCAV-ATCRPDE--FQC-SDGNCIHGSRQCDREYDCK 259
Query: 235 DRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLN----- 289
D SDE +F+C+S G+CI + VC+ DC D SDE + N
Sbjct: 260 DMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDN 318
Query: 290 --------VETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRC 341
+ + C +G L+ C+ ++C D V +C
Sbjct: 319 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ----LCVNLEGGYKC 374
Query: 342 LLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDD 397
E + + + + + + + S++ D
Sbjct: 375 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 430
Score = 192 bits (489), Expect = 1e-50
Identities = 105/419 (25%), Positives = 144/419 (34%), Gaps = 47/419 (11%)
Query: 827 QCACPDNFILESDGKTCRHNCSAGQFLCEKTM-KCIPFWWKCDTQDDCGDKSDEHDQCPQ 885
C D ES C +G F C + +CIP +W+CD Q DC + SDE CP
Sbjct: 46 SAECQDGSD-ESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG-CPP 103
Query: 886 FHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDH 945
C +F+C++ KC+ +CD +C D SDE C TC F+C
Sbjct: 104 KTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCN-------SST 156
Query: 946 CISLLNRCDGHPDCPLGEDEHDCM----------PKNCTANEFQC-DVKCISLALVCDKV 994
CI L CD PDC G DE C+A EF C +CI + CD
Sbjct: 157 CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGG 216
Query: 995 FDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYT 1054
DC D+SDE +C TC PD +C G CI + QCD + DC + DE
Sbjct: 217 PDCKDKSDE-ENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVT--LC 273
Query: 1055 CDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCN 1114
P FKC++ +CI C+ DC D SDE C +E NG C
Sbjct: 274 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK---ECGTNECLDNNGGCSHVCNDLK 330
Query: 1115 GENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPN 1174
+C + + C+ +C D + +
Sbjct: 331 IGYEC-------------------LCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 371
Query: 1175 M-FTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCD 1232
C + + + + D
Sbjct: 372 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 430
Score = 138 bits (349), Expect = 2e-33
Identities = 66/193 (34%), Positives = 87/193 (45%), Gaps = 9/193 (4%)
Query: 1111 YVCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCT-- 1168
+ + C +NEF+C CIS VCDG +C DGSDE+ T
Sbjct: 3 WKLRWTVALLLAAAGTAVGDRCERNEFQCQD-GKCISYKWVCDGSAECQDGSDESQETCL 61
Query: 1169 -TKCKPNMFTCANH--QCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCI 1225
CK F+C +CI WRCDG+ DC + SDE C C + F+C + KCI
Sbjct: 62 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG--CPPKTCSQDEFRCHDGKCI 119
Query: 1226 HRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEG 1285
R +CD +C D SDE+ CP + C A+F+C + CI + CD DC D SDE
Sbjct: 120 SRQFVCDSDRDCLDGSDEASCPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 178
Query: 1286 CDSPLCKFRTCSQ 1298
Sbjct: 179 QRCRGLYVFQGDS 191
Score = 123 bits (308), Expect = 2e-28
Identities = 76/334 (22%), Positives = 110/334 (32%), Gaps = 48/334 (14%)
Query: 838 SDGKTCR-HNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHD---------QCPQFH 887
SD +C C F C + CIP W CD DC D SDE Q
Sbjct: 135 SDEASCPVLTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP 193
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCI 947
C +F C + +C+H + CDG +C D SDE +C TC +F+C +CI
Sbjct: 194 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCS-------DGNCI 246
Query: 948 SLLNRCDGHPDCPLGEDEHDCMPKN--CTANEFQC-DVKCISLALVCDKVFDCLDRSDEP 1004
+CD DC DE C+ N+F+C +CI+L VC+ DC D SDEP
Sbjct: 247 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 306
Query: 1005 ADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNN 1064
D + C C +
Sbjct: 307 IKECGTNECLDNNGGCSHVCND---------------------------LKIGYECLCPD 339
Query: 1065 YKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSD 1124
+ C+ D+C D + +C G + PH +
Sbjct: 340 GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 399
Query: 1125 EINCNISCSKNEFKCSHPAHCISSDLVCDGDTDC 1158
N + + + + + V DT+
Sbjct: 400 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV 433
Score = 67.2 bits (163), Expect = 3e-11
Identities = 43/224 (19%), Positives = 63/224 (28%), Gaps = 30/224 (13%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSD 61
CI ++ CDR Y+C D SDE P FKC + +CI CN DC D SD
Sbjct: 245 CIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSD 304
Query: 62 EADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCN 121
E CG + + G C H + +C
Sbjct: 305 E-PIKECGTNECLDNNGGCSHVCNDLKIGYEC--------------------------LC 337
Query: 122 FTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLC---RNGNCILSRWR 178
+ C+ ++C D + K C L + + S
Sbjct: 338 PDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY 397
Query: 179 CDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCIS 222
N L E + + +N+ S
Sbjct: 398 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWS 441
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 421 bits (1083), Expect = e-131
Identities = 241/722 (33%), Positives = 333/722 (46%), Gaps = 59/722 (8%)
Query: 159 NCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNK 218
C ++F C++G CI +W CDG +C DG SDE S + +
Sbjct: 5 RCERNEFQCQDGKCISYKWVCDGSAECQDG-----SDESQETCLSVTCKSGDFSCGGRVN 59
Query: 219 TCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDK 278
CI + W CDG DC + SDE C C+ EFRC+ G+CI +VCD DC+D
Sbjct: 60 RCIPQFWRCDGQVDCDNGSDEQG--CPPKTCSQDEFRCHD-GKCISRQFVCDSDRDCLDG 116
Query: 279 SDEHHSQDCLNVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE-------------P 325
SDE V TC F+C + C+ + + CD + DC D SDE
Sbjct: 117 SDEA----SCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD 172
Query: 326 IVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPS 385
+ CL+G C+ ++ CDG DC D SDE T + F+C +GNCI
Sbjct: 173 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPD--EFQCSDGNCIHG 230
Query: 386 VLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCINETLTCNDINDCGDNS 445
C+ DC D SDE C+ P+ F C +G CI CN DC D S
Sbjct: 231 SRQCDREYDCKDMSDEVGCVNVTL-----CEGPNKFKCHSGECITLDKVCNMARDCRDWS 285
Query: 446 DEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRP-C 504
DE C+H C DLKIGY+C C G+Q+ + C D +EC D C
Sbjct: 286 DEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV--AQRRCEDIDECQDPDTC 343
Query: 505 SHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVTQAGVMTIRIH 564
S C N G Y C C G+ L CKA + + T I
Sbjct: 344 SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIP 403
Query: 565 NQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPAT-------SPDGLTVD 617
N N V LD + N +YWSD++ I + + + T +PDGL VD
Sbjct: 404 NLRNVVALDTEVASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461
Query: 618 WVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHI 677
W+ N+YW D L T+ VA G RK L + +PR I ++P +G+MYWTDWG A I
Sbjct: 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKI 521
Query: 678 GKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRR 737
K ++G + ++++N+ WPN +T+ + L+W D+ I+ D+NG N K I+
Sbjct: 522 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-- 579
Query: 738 MDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYHP 797
L H F+LAVFED +FWTD ++I ++ TG + + +NL P D+ ++H
Sbjct: 580 --DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHQ 636
Query: 798 YRQTPLKDNPCE----NNGGCQGLCLLKP-----NGHRQCACPDNFILESDGKTCRHNCS 848
Q P N CE +NGGCQ LCL P + CACPD +L D ++C
Sbjct: 637 LTQ-PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAE 695
Query: 849 AG 850
A
Sbjct: 696 AA 697
Score = 230 bits (586), Expect = 1e-63
Identities = 131/389 (33%), Positives = 169/389 (43%), Gaps = 19/389 (4%)
Query: 887 HCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDEL--HCVDYTCLNTQFKCKRDPAQGTGD 944
C +FQC + KC+ +CDG C D SDE C+ TC + F C G +
Sbjct: 5 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCG-----GRVN 59
Query: 945 HCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDE 1003
CI RCDG DC G DE C PK C+ +EF+C D KCIS VCD DCLD SDE
Sbjct: 60 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 119
Query: 1004 PADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCA------DPNLYTCDP 1057
A C TCGP +C++ CIP+ W CD D DC + DE P + C
Sbjct: 120 -ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSA 178
Query: 1058 TYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGEN 1117
F C + +CI SW CD DC D SDE+NC C EF+C++G CI C+ E
Sbjct: 179 FEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREY 238
Query: 1118 DCADHSDEINC---NISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPN 1174
DC D SDE+ C + N+FKC H CI+ D VC+ DC D SDE
Sbjct: 239 DCKDMSDEVGCVNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNEC 297
Query: 1175 MFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGI 1234
+ + + + E C D + E + C++
Sbjct: 298 LDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 357
Query: 1235 DNCGDNSDESHCPSIKLCSEANFKCANGN 1263
G D + S A N +
Sbjct: 358 CEEGFQLDPHTKACKAVGSIAYLFFTNRH 386
Score = 199 bits (507), Expect = 2e-53
Identities = 117/422 (27%), Positives = 155/422 (36%), Gaps = 40/422 (9%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKCILSSHTCNNINDCGDG 59
CI + CD C D SDE C C+ G F C N+CI C+ DC +G
Sbjct: 18 CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNG 77
Query: 60 SDEADCS--TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNP 117
SDE C TC D F C G CI + CD D DC D SDE CP+ C
Sbjct: 78 SDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGP------AS 131
Query: 118 IHCNFTSACIEESYICDGQNDCFDMSDEQNCD---QIKDVSPKMNCSGDKFLCRNGNCIL 174
CN +S CI + + CD DC D SDE CS +F C +G CI
Sbjct: 132 FQCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIH 190
Query: 175 SRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCT 234
S WRCDG DC D +D + C + FQC ++ CI S CD YDC
Sbjct: 191 SSWRCDGGPDCKDKSDEENCAVATC--------RPDEFQC-SDGNCIHGSRQCDREYDCK 241
Query: 235 DRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLN----- 289
D SDE +F+C+S G+CI + VC+ DC D SDE + N
Sbjct: 242 DMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDN 300
Query: 290 --------VETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRC 341
+ + C +G L+ C+ ++C D + + +
Sbjct: 301 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNL---EGGYKCQ 357
Query: 342 LLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDE 401
E + D T+ + V D
Sbjct: 358 CEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS 417
Query: 402 DM 403
+
Sbjct: 418 NR 419
Score = 195 bits (496), Expect = 5e-52
Identities = 108/460 (23%), Positives = 157/460 (34%), Gaps = 73/460 (15%)
Query: 823 NGHRQCACPDNFILESDGKTCRHNCSAGQFLCE-KTMKCIPFWWKCDTQDDCGDKSDEHD 881
+G +C + ES C +G F C + +CIP +W+CD Q DC + SDE
Sbjct: 26 DGSAECQDGSD---ESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG 82
Query: 882 QCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQG 941
CP C +F+C++ KC+ +CD +C D SDE C TC F+C
Sbjct: 83 -CPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCN------ 135
Query: 942 TGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQCDVKCISLALVCDKVFDCLDRS 1001
CI L CD PDC G DE + +
Sbjct: 136 -SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQ------------------------ 170
Query: 1002 DEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFK 1061
S C C +G CI +W+CDG DC ++ DE TC P F+
Sbjct: 171 -----GDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAV----ATCRPDEFQ 221
Query: 1062 CNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRN--CSESEFRCANGKCIRPHYVCNGENDC 1119
C++ CI GS CD + DC D SDE C ++F+C +G+CI VCN DC
Sbjct: 222 CSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDC 281
Query: 1120 ADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCA 1179
D SDE ++ +G C C
Sbjct: 282 RDWSDEPIKECGTNECL---------------------DNNGGCSHVCNDLKIGYECLCP 320
Query: 1180 NHQCISLNWRCDGEPDCSDNSDEIESICAG-----LACEPNRFKCKNNKCIHRYAMCDGI 1234
+ + RC+ +C D + CE + K +
Sbjct: 321 DGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 380
Query: 1235 DNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQY 1274
+ + N + E+ ++
Sbjct: 381 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRI 420
Score = 160 bits (406), Expect = 1e-40
Identities = 79/220 (35%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 1092 RNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINC---NISCSKNEFKC-SHPAHCIS 1147
C +EF+C +GKCI +VC+G +C D SDE +++C +F C CI
Sbjct: 4 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 63
Query: 1148 SDLVCDGDTDCWDGSDEANCTTK-CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESI 1206
CDG DC +GSDE C K C + F C + +CIS + CD + DC D SD E+
Sbjct: 64 QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSD--EAS 121
Query: 1207 CAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC---------PSIKLCSEANF 1257
C L C P F+C ++ CI + CD +C D SDE CS F
Sbjct: 122 CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF 181
Query: 1258 KCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCS 1297
C +G CI CD DC D SDEE C C+
Sbjct: 182 HCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQ 221
Score = 136 bits (342), Expect = 8e-33
Identities = 85/354 (24%), Positives = 116/354 (32%), Gaps = 30/354 (8%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSD 61
CI CD +C D SDE C + C P F+C+++ CI C+N DC DGSD
Sbjct: 100 CISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 157
Query: 62 EADC------------STCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTE 109
E S C FHC G CIH + RCD PDC D SDE +C + C
Sbjct: 158 EWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRP 217
Query: 110 KYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRN 169
++ CI S CD + DC DMSDE C + + +KF C +
Sbjct: 218 DEFQCSD-------GNCIHGSRQCDREYDCKDMSDEVGCV-----NVTLCEGPNKFKCHS 265
Query: 170 GNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDG 229
G CI C+ DC D +D + + + C NN N I +C
Sbjct: 266 GECITLDKVCNMARDCRDWSD----EPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPD 321
Query: 230 TYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLN 289
+ + + N G + S L
Sbjct: 322 GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 381
Query: 290 VETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRCLL 343
E L+ D W + + + L
Sbjct: 382 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 435
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 309 bits (791), Expect = 2e-94
Identities = 156/395 (39%), Positives = 209/395 (52%), Gaps = 16/395 (4%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRP-CSHYCRN 510
CNV++GG CA +C ++ +C C GY++ ED C D NEC + CS C N
Sbjct: 3 EENCNVNNGG--CAQKCQMIRGAVQCTCHTGYRLT-EDGRTCQDVNECAEEGYCSQGCTN 59
Query: 511 TLGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVTQAGVMTIRIHNQTNAV 570
+ G++ C C GY L D+ CKA P L + + T+ ++N NA+
Sbjct: 60 SEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAI 119
Query: 571 GLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPA--TSPDGLTVDWVGRNLYWCDK 628
LDF ++WSDVT +R + N S E + SP GL VDWV LYW D
Sbjct: 120 ALDFHHRRELVFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS 178
Query: 629 GLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPK 688
G IEVA LDG RKVL+ + L++PR IAL+P G +YWTDWG I + MDGS +
Sbjct: 179 GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR 238
Query: 689 VIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVF 748
+I +L WPN LTI Y ++W DA I ++L+G + K ++S+ L H F
Sbjct: 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------GLPHPF 292
Query: 749 ALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPC 808
A+ VFED L+WTDW KSI +K+TGKN + L H PMD+ HP RQ K+
Sbjct: 293 AITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL-HFPMDIHTLHPQRQPAGKNRCG 351
Query: 809 ENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
+NNGGC LCL + CACP F + C
Sbjct: 352 DNNGGCTHLCLPSGQNYT-CACPTGFRKI-NSHAC 384
Score = 44.8 bits (105), Expect = 2e-04
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 3/129 (2%)
Query: 806 NPCE-NNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRH-NCSAGQFLCEKTMKCIPF 863
C NNGGC C + + C C + L DG+TC+ N A + C +
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQ-CTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEG 62
Query: 864 WWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCV 923
++C + + D F + ++ + +
Sbjct: 63 AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD 122
Query: 924 DYTCLNTQF 932
+ F
Sbjct: 123 FHHRRELVF 131
Score = 38.6 bits (89), Expect = 0.015
Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Query: 801 TPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKC 860
T N C G C C G QC C + L D ++C+ L +
Sbjct: 40 TCQDVNECAEEGYCSQGCTNSE-GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRI-D 97
Query: 861 IPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQF 893
I ++ + E+ FH
Sbjct: 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELV 130
Score = 31.7 bits (71), Expect = 1.9
Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 12/148 (8%)
Query: 181 GDNDCNDGNDGLSSDEMNCDTESTC------------KANNNVFQCDNNKTCISKSWVCD 228
G+ +CN N G + C + +V +C C +
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 229 GTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCL 288
G + C + S L I I V ++ + + L
Sbjct: 62 GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIAL 121
Query: 289 NVETCMEGYFKCLNGRCLLENYYCDGEN 316
+ E F + +G N
Sbjct: 122 DFHHRRELVFWSDVTLDRILRANLNGSN 149
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 299 bits (766), Expect = 2e-92
Identities = 76/271 (28%), Positives = 124/271 (45%), Gaps = 20/271 (7%)
Query: 542 LLFTNKYYIR-------EVTQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIR 594
LLF I + + +GL FD VD +YW+D++ SI
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP--SIG 61
Query: 595 RSC-NNSQPELLFPA--TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGL 651
R+ + +P + SP+G+ +D +GR ++W D LD IEVAK+DG R+VL + GL
Sbjct: 62 RASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121
Query: 652 QEPRGIALNPAYGYMYWTDWGQ-NAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNEL 710
PRGI +P G +YWTDW + N I + MDG+N +++ NL PN LT +++L
Sbjct: 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQL 181
Query: 711 FWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERC 770
W DA + + ++ L + FA+ + +L++TDW+ S+
Sbjct: 182 CWVDAGTHRAECLNPAQPGRRKVLE-------GLQYPFAVTSYGKNLYYTDWKTNSVIAM 234
Query: 771 DKYTGKNCTSVVKNLVHKPMDLRVYHPYRQT 801
D K + + + + +
Sbjct: 235 DLAISKEMDTFHPHKQTRLYGITIALSQCPQ 265
Score = 32.5 bits (74), Expect = 0.80
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 1351 LDPYASRAKSEISPLNLDATKIYSVDLLYEDRNNIMVYWVDRHAKVIKMASISSGNVTRV 1410
L+ + + L++ A I + D + +VYW D I AS+ G T +
Sbjct: 17 LERNTMKKTEAKAFLHIPAKVIIGLAF---DCVDKVVYWTDISEPSIGRASLHGGEPTTI 73
Query: 1411 KRE 1413
R+
Sbjct: 74 IRQ 76
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 296 bits (759), Expect = 6e-91
Identities = 125/321 (38%), Positives = 178/321 (55%), Gaps = 17/321 (5%)
Query: 539 PPNLLFTNKYYIREV---TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRR 595
P LL+ N+ +R V TI + +A +DF + +YWSDV+ +I+R
Sbjct: 4 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE--AIKR 61
Query: 596 SCNN--SQPELLFPA--TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGL 651
+ N + + + SPDGL DW+G LYW D + IEV+ LDG RKVL + L
Sbjct: 62 TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 121
Query: 652 QEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELF 711
+PR IAL+P+ G+MYWTDWG+ I +A MDGS+ +II+ + WPN LT+ YE +L+
Sbjct: 122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 181
Query: 712 WGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCD 771
W DA ++I S+L+G N + +V +L H FAL +FED L+WTDW SI C+
Sbjct: 182 WADAKLNFIHKSNLDGTNRQAVVKG------SLPHPFALTLFEDILYWTDWSTHSILACN 235
Query: 772 KYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCENNGGCQGLCLLKPN-GHRQCAC 830
KYTG+ + ++ PMD+ + RQ + +NGGC LCL+ P QCAC
Sbjct: 236 KYTGEGLREIHSDI-FSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 294
Query: 831 PDNFILESDGKTCRHNCSAGQ 851
P L +GKTC+ S
Sbjct: 295 PTGVKLLENGKTCKDGNSHHH 315
Score = 38.9 bits (90), Expect = 0.009
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 482 GYQVHPEDKHLCVDTNECLDRPCSHYC--RNTLGSYSCSCAPGYALLSDKHGCKA 534
+ + + + + CSH C Y C+C G LL + CK
Sbjct: 255 IHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 309
Score = 33.1 bits (75), Expect = 0.59
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 446 DEFSCFVNECNVSHGGQLCAHECI--DLKIGYKCACRKGYQVHPEDKHLCVDTNEC 499
+ C+H C+ +K Y+CAC G ++ + C D N
Sbjct: 259 SQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLE-NGKTCKDGNSH 313
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 292 bits (748), Expect = 2e-89
Identities = 113/317 (35%), Positives = 170/317 (53%), Gaps = 21/317 (6%)
Query: 542 LLFTNKYYIREVTQAG-VMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHG---SSIRRSC 597
L FTN++ +R++T T I N N V LD + N +YWSD++ + + R+
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63
Query: 598 NNSQPELLFPA--TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPR 655
S + + +PDGL VDW+ N+YW D L T+ VA G RK L + +PR
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR 123
Query: 656 GIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDA 715
I ++P +G+MYWTDWG A I K ++G + ++++N+ WPN +T+ + L+W D+
Sbjct: 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183
Query: 716 HEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTG 775
I+ D+NG N K I+ L H F+LAVFED +FWTD ++I ++ TG
Sbjct: 184 KLHSISSIDVNGGNRKTILED----EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239
Query: 776 KNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCE----NNGGCQGLCLLKP-----NGHR 826
+ + +NL P D+ ++H Q P N CE +NGGCQ LCL P +
Sbjct: 240 SDVNLLAENL-LSPEDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKF 297
Query: 827 QCACPDNFILESDGKTC 843
CACPD +L D ++C
Sbjct: 298 TCACPDGMLLARDMRSC 314
Score = 35.8 bits (82), Expect = 0.092
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 487 PEDKHLCVDTNECLDRPCSHYCRNT------LGSYSCSCAPGYALLSDKHGC 532
P + C + + C + C ++C+C G L D C
Sbjct: 264 PRGVNWC-ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 294 bits (752), Expect = 6e-89
Identities = 143/406 (35%), Positives = 206/406 (50%), Gaps = 25/406 (6%)
Query: 453 NECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLD-RPCSHYCRNT 511
NEC ++GG C+H C DLKIGY+C C G+Q+ + C D +EC D CS C N
Sbjct: 1 NECLDNNGG--CSHVCNDLKIGYECLCPDGFQLV--AQRRCEDIDECQDPDTCSQLCVNL 56
Query: 512 LGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVTQAGVMTIRIHNQTNAVG 571
G Y C C G+ L CKA + + T I N N V
Sbjct: 57 EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Query: 572 LDFDWVDNCLYWSDVTMHG---SSIRRSCNNSQPELLFPA--TSPDGLTVDWVGRNLYWC 626
LD + N +YWSD++ + + R+ S + + +PDGL VDW+ N+YW
Sbjct: 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT 176
Query: 627 DKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSN 686
D L T+ VA G RK L + +PR I ++P +G+MYWTDWG A I K ++G +
Sbjct: 177 DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236
Query: 687 PKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHH 746
++++N+ WPN +T+ + L+W D+ I+ D+NG N K I+ L H
Sbjct: 237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE----DEKRLAH 292
Query: 747 VFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDN 806
F+LAVFED +FWTD ++I ++ TG + + +NL P D+ ++H Q P N
Sbjct: 293 PFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQ-PRGVN 350
Query: 807 PCE----NNGGCQGLCLLKP-----NGHRQCACPDNFILESDGKTC 843
CE +NGGCQ LCL P + CACPD +L D ++C
Sbjct: 351 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 46.0 bits (108), Expect = 7e-05
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 2/130 (1%)
Query: 806 NPC-ENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPFW 864
N C +NNGGC +C G+ +C CPD F L + + + C + +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGY-ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 59
Query: 865 WKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVD 924
+KC ++ F + + + ++ + +
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDT 119
Query: 925 YTCLNTQFKC 934
N +
Sbjct: 120 EVASNRIYWS 129
Score = 36.4 bits (83), Expect = 0.074
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 1/111 (0%)
Query: 805 DNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPFW 864
+ C++ C LC+ G++ C C + F L+ K C+ S +
Sbjct: 40 IDECQDPDTCSQLCVNLEGGYK-CQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 98
Query: 865 WKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGD 915
+ + ++ + +T D +
Sbjct: 99 LDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 149
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 279 bits (714), Expect = 4e-81
Identities = 103/385 (26%), Positives = 170/385 (44%), Gaps = 26/385 (6%)
Query: 482 GYQVHPEDKHLCVDTNECLDRPCSHYC-RNTLGSYSCSCAPGYALLSDKHGCKATSDVPP 540
V + + + CSH C +G + C C Y+L +D C
Sbjct: 253 DILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS---APTT 309
Query: 541 NLLFTNKYYIREV----TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRS 596
LLF+ K I + Q+ + + IH+ N +D+D +D LYW D + IR++
Sbjct: 310 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQN--MIRKA 367
Query: 597 C-NNSQPELLFPAT--------SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLI 647
+ SQ + ++ P L++D R +YW + + I V +LDGR V++
Sbjct: 368 QEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVL 427
Query: 648 NKGLQEPRGIALNPAYGYMYWTDWGQNA-HIGKAKMDGSNPKVIISKNLSWPNALTISYE 706
PR + +NP GYMY+T+ + + I +A +DG+ +V+ LS P AL +
Sbjct: 428 KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSR 487
Query: 707 TNELFWGDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKS 766
+LFW D+ I SDL+G N ++ N+ L VFE+ L+W D + +
Sbjct: 488 LGKLFWADSDLRRIESSDLSGANRIVLEDS------NILQPVGLTVFENWLYWIDKQQQM 541
Query: 767 IERCDKYTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCENNGGCQGLCLLKPNGHR 826
IE+ D + T V + V Q + ++NGGC +CL+K +G
Sbjct: 542 IEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTT 601
Query: 827 QCACPDNFILESDGKTCRHNCSAGQ 851
+C+CP + +L D +C
Sbjct: 602 RCSCPMHLVLLQDELSCGGTKHHHH 626
Score = 244 bits (624), Expect = 4e-69
Identities = 119/330 (36%), Positives = 180/330 (54%), Gaps = 18/330 (5%)
Query: 540 PNLLFTNKYYIREV---TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRS 596
LLF+ + IR + T + I + A LDFD DN +YW+D+++ +I R+
Sbjct: 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLK--TISRA 64
Query: 597 C-NNSQPELLFPA--TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQE 653
N S E + P+G+ VDW+G+NLYW D G + IEV+KLDG+ R+VL+ K L
Sbjct: 65 FMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 124
Query: 654 PRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWG 713
PR +AL+PA G+MYWT+WG I +A MDGS ++ N+ N LTI Y L+W
Sbjct: 125 PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWT 183
Query: 714 DAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKY 773
D + I S++ G N ++I +L H F L ++D+++WTDW +SIER +K
Sbjct: 184 DLDTNLIESSNMLGLNREVIAD-------DLPHPFGLTQYQDYIYWTDWSRRSIERANKT 236
Query: 774 TGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCENNGGCQGLCLLKPNGHRQCACPDN 833
+G+N T + +L MD+ V+H RQ+ + +NG C LCL P G C CP +
Sbjct: 237 SGQNRTIIQGHL-DYVMDILVFHSSRQSGWNECAS-SNGHCSHLCLAVPVGGFVCGCPAH 294
Query: 834 FILESDGKTCRHNCSAGQFLCEKTMKCIPF 863
+ L +D +TC + F + + +
Sbjct: 295 YSLNADNRTCSAPTTFLLFSQKSAINRMVI 324
Score = 33.2 bits (75), Expect = 0.63
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 12/152 (7%)
Query: 1259 CANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQICIEKKISNTERTFSCHCAE 1318
N I+ L+ +S + G + CS +C+ + F C C
Sbjct: 238 GQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCL----AVPVGGFVCGCPA 293
Query: 1319 GYHMVHGKNKTSSCVANGKSALLLIAHTTLKVLDPYASRAKSEISPLNLDATKIYSVDLL 1378
Y + N + + + LL + + + ++ I P++ + ++D
Sbjct: 294 HYSL----NADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH-SLRNVRAIDYD 348
Query: 1379 YEDRNNIMVYWVDRHAKVIKMASISSGNVTRV 1410
D+ +YW+D +I+ A V
Sbjct: 349 PLDK---QLYWIDSRQNMIRKAQEDGSQGFTV 377
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 265 bits (679), Expect = 1e-79
Identities = 140/355 (39%), Positives = 185/355 (52%), Gaps = 13/355 (3%)
Query: 497 NECLDRP-CSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVPPNLLFTNKYYIREVTQ 555
NEC + CS C N+ G++ C C GY L D+ CKA P L + +
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH 61
Query: 556 AGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPA--TSPDG 613
T+ ++N NA+ LDF ++WSDVT +R + N S E + SP G
Sbjct: 62 RSEYTLLLNNLENAIALDFHHRRELVFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGG 120
Query: 614 LTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQ 673
L VDWV LYW D G IEVA LDG RKVL+ + L++PR IAL+P G +YWTDWG
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180
Query: 674 NAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKII 733
I + MDGS ++I +L WPN LTI Y ++W DA I ++L+G + K +
Sbjct: 181 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240
Query: 734 VSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLVHKPMDLR 793
+S+ L H FA+ VFED L+WTDW KSI +K+TGKN + L H PMD+
Sbjct: 241 ISQ------GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL-HFPMDIH 293
Query: 794 VYHPYRQTPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCS 848
HP RQ K+ +NNGGC LCL + CACP F + C
Sbjct: 294 TLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYT-CACPTGFRK-INSHACALEVL 346
Score = 40.2 bits (93), Expect = 0.004
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 806 NPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPFWW 865
N C G C C QC C + L D ++C+ L +
Sbjct: 2 NECAEEGYCSQGCTNSEGAF-QCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 866 KCDTQ 870
Sbjct: 61 HRSEY 65
Score = 36.0 bits (82), Expect = 0.073
Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 1295 TCSQICIEKKISNTERTFSCHCAEGYHMVHGKNKTSSCVANGKSALLLIAHTTLKVLDPY 1354
CSQ C N+E F C C GY + SC A G +LL A+
Sbjct: 9 YCSQGCT-----NSEGAFQCWCEAGYELRPD---RRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 1355 ASRAKSEISPLNLDATKIYSVDLLYEDRNNIMVYWVDRHAKVIKMASISSGNVTRV 1410
+ L + + L +V+W D I A+++ NV V
Sbjct: 61 HRSEYT------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110
Score = 34.5 bits (78), Expect = 0.25
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 485 VHPEDKHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPGYALLSDK 529
+HP+ + + + C+H C + +Y+C+C G+ ++
Sbjct: 295 LHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSH 339
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 272 bits (696), Expect = 1e-78
Identities = 122/369 (33%), Positives = 195/369 (52%), Gaps = 19/369 (5%)
Query: 482 GYQVHPEDKHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVPPN 541
+ + + + + CSH C + CA + ++G
Sbjct: 260 IHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL 319
Query: 542 LLFTNKYYIREV----TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSC 597
LL + +R + + +++ + +A+ +D+D V+ +YW+D + +IRRS
Sbjct: 320 LLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR--AIRRSF 377
Query: 598 -NNSQPELLFPA--TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEP 654
+ S + + A PDG+ VDWV RNLYW D G D IEV +L+G RK+LI++ L+EP
Sbjct: 378 IDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEP 437
Query: 655 RGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGD 714
R I L+P GYMYWTDWG+ I +A +DGS+ V+++ +L WPN L + Y+ +++WGD
Sbjct: 438 RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGD 497
Query: 715 AHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYT 774
A D I V + +G +++V + H+F + D+++WTDW+ +SIER K +
Sbjct: 498 AKTDKIEVMNTDGTGRRVLVED------KIPHIFGFTLLGDYVYWTDWQRRSIERVHKRS 551
Query: 775 GKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNF 834
+ V+ + + M L+ + +R + E NGGC LCL +P G R CACP F
Sbjct: 552 AER--EVIIDQLPDLMGLKATNVHRVIG-SNPCAEENGGCSHLCLYRPQGLR-CACPIGF 607
Query: 835 ILESDGKTC 843
L SD KTC
Sbjct: 608 ELISDMKTC 616
Score = 248 bits (634), Expect = 2e-70
Identities = 128/342 (37%), Positives = 182/342 (53%), Gaps = 17/342 (4%)
Query: 540 PNLLFTNKYYIREV---TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRS 596
P LL+ N+ +R V TI + +A +DF + +YWSDV+ +I+R+
Sbjct: 10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE--AIKRT 67
Query: 597 C----NNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQ 652
+ Q ++ SPDGL DW+G LYW D + IEV+ LDG RKVL + L
Sbjct: 68 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 127
Query: 653 EPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFW 712
+PR IAL+P+ G+MYWTDWG+ I +A MDGS+ +II+ + WPN LT+ YE +L+W
Sbjct: 128 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 187
Query: 713 GDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDK 772
DA ++I S+L+G N R+ +L H FAL +FED L+WTDW SI C+K
Sbjct: 188 ADAKLNFIHKSNLDGTN------RQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNK 241
Query: 773 YTGKNCTSVVKNLVHKPMDLRVYHPYRQTPLKDNPCENNGGCQGLCLLKPNGH-RQCACP 831
YTG+ + ++ PMD+ + RQ + +NGGC LCL+ P QCACP
Sbjct: 242 YTGEGLREIHSDI-FSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 300
Query: 832 DNFILESDGKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDC 873
L +GKTC+ + L +T D D
Sbjct: 301 TGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIV 342
Score = 30.9 bits (69), Expect = 3.3
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 464 CAHECIDLKIGYKCACRKGYQVHPEDKHLCV 494
C+H C+ G +CAC G+++ D C+
Sbjct: 588 CSHLCLYRPQGLRCACPIGFELIS-DMKTCI 617
Score = 29.8 bits (66), Expect = 8.8
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 1332 CVANGKSALLLIAH-TTLKVLDPYASRAKSEISPLNLDATKIYSVDLLYEDRNNIMVYWV 1390
+ + LLL A+ L+++D A+ K + + +VD ++ ++YW
Sbjct: 3 HHHHHHAPLLLYANRRDLRLVD--ATNGKENATIVVGGLEDAAAVDFVFSHG---LIYWS 57
Query: 1391 DRHAKVIKMASISSGNVTRV 1410
D + IK + +
Sbjct: 58 DVSEEAIKRTEFNKTESVQN 77
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 119 bits (300), Expect = 1e-29
Identities = 25/245 (10%), Positives = 70/245 (28%), Gaps = 25/245 (10%)
Query: 535 TSDVPPNLLFTNKYYIREVTQAGVMTIRIHN-QTNAVGLDFDWVDNCLYWSDVTMHGSSI 593
++ + + + G + + L +++ Y T +S+
Sbjct: 75 QKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYI---YYLHYDTQTATSL 131
Query: 594 RR-SCNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQ 652
R + + + + + T + R Y+ + + + + +
Sbjct: 132 YRIRIDGEEKKKI---KNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY 188
Query: 653 EPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFW 712
+P + +Y+ D ++ I ++ NP V+ N+ N Y + +
Sbjct: 189 KPVVLD----DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQ 240
Query: 713 GDAHEDYIAVSDLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDK 772
+ V +G K + + V ++++TD+
Sbjct: 241 RGGDNPALCVVKNDGTGFKELAK---------GEFCNINVTSQYVYFTDFVSNKEYCTST 291
Query: 773 YTGKN 777
Sbjct: 292 QNPDT 296
Score = 43.6 bits (102), Expect = 3e-04
Identities = 23/189 (12%), Positives = 58/189 (30%), Gaps = 36/189 (19%)
Query: 620 GRNLYWCD-KGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDW------- 671
+++ + + +DG L N + +N Y+Y+
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSND-----TAMYINADKNYVYYVRNNNQKITS 79
Query: 672 -----GQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFW---GDAHEDYIAVS 723
+ + K +G V+ + S N +++ +
Sbjct: 80 QTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYA-----SLIGNYIYYLHYDTQTATSLYRI 134
Query: 724 DLNGENIKIIVSRRMDPTINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVK 783
++GE K I + H++F + + ++ + + + R D ++
Sbjct: 135 RIDGEEKKKIKN---------HYLFTCNTSDRYFYYNNPKNGQLYRYDT-ASQSEALFYD 184
Query: 784 NLVHKPMDL 792
+KP+ L
Sbjct: 185 CNCYKPVVL 193
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 103 bits (259), Expect = 1e-26
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVC 1113
TC F+C++ KCI + CD D DC DGSDE +C C + F+C + CI + C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 1114 NGENDCADHSDEINCN 1129
+ + DC D SDE
Sbjct: 62 DNDPDCEDGSDEWPQR 77
Score = 92.7 bits (231), Expect = 8e-23
Identities = 39/80 (48%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTK-CKPNMFTCANHQCISLNWR 1189
+CS+ EF+C CIS VCD D DC DGSDEA+C C P F C + CI W
Sbjct: 2 TCSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 1190 CDGEPDCSDNSDEIESICAG 1209
CD +PDC D SDE C G
Sbjct: 61 CDNDPDCEDGSDEWPQRCRG 80
Score = 92.0 bits (229), Expect = 2e-22
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1092 RNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINC-NISCSKNEFKCSHPAHCISSDL 1150
+ CS++EFRC +GKCI +VC+ + DC D SDE +C ++C F+C+ + CI
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS-STCIPQLW 59
Query: 1151 VCDGDTDCWDGSDEANC 1167
CD D DC DGSDE
Sbjct: 60 ACDNDPDCEDGSDEWPQ 76
Score = 90.8 bits (226), Expect = 3e-22
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAM 1230
C F C + +CIS + CD + DC D SDE C L C P F+C ++ CI +
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSSTCIPQLWA 60
Query: 1231 CDGIDNCGDNSDESHC 1246
CD +C D SDE
Sbjct: 61 CDNDPDCEDGSDEWPQ 76
Score = 88.5 bits (220), Expect = 3e-21
Identities = 36/83 (43%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 1010 QTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIP 1069
+TC RC G+CI + + CD D DC + DE A + TC P F+CN+ CIP
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE----ASCPVLTCGPASFQCNSSTCIP 56
Query: 1070 GSWHCDYDDDCGDGSDEKNCTPR 1092
W CD D DC DGSDE R
Sbjct: 57 QLWACDNDPDCEDGSDEWPQRCR 79
Score = 85.0 bits (211), Expect = 4e-20
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELEC 1271
C F+C + KCI R +CD +C D SDE+ CP + C A+F+C + CI + C
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT-CGPASFQCNSSTCIPQLWAC 61
Query: 1272 DQYNDCGDNSDEEGC 1286
D DC D SDE
Sbjct: 62 DNDPDCEDGSDEWPQ 76
Score = 84.6 bits (210), Expect = 5e-20
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 29 RDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCS--TCGNDTFHCDMGMCIHKALR 86
+ C F+C + KCI C++ DC DGSDEA C TCG +F C+ CI +
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 87 CDVDPDCPDASDEMHC 102
CD DPDC D SDE
Sbjct: 61 CDNDPDCEDGSDEWPQ 76
Score = 81.9 bits (203), Expect = 4e-19
Identities = 39/76 (51%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 971 KNCTANEFQC-DVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTW 1029
K C+ EF+C D KCIS VCD DCLD SDE A C TCGP +C++ CIP+ W
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQLW 59
Query: 1030 QCDGDVDCPNREDEPP 1045
CD D DC + DE P
Sbjct: 60 ACDNDPDCEDGSDEWP 75
Score = 81.2 bits (201), Expect = 9e-19
Identities = 35/80 (43%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 204 TCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCI 263
TC F+C + K CIS+ +VCD DC D SDE C C F+CNS CI
Sbjct: 2 TCSQAE--FRCHDGK-CISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNS-STCI 55
Query: 264 PITWVCDGVTDCIDKSDEHH 283
P W CD DC D SDE
Sbjct: 56 PQLWACDNDPDCEDGSDEWP 75
Score = 80.4 bits (199), Expect = 1e-18
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTI 906
CS +F C KCI + CD+ DC D SDE CP C P FQCN++ C+
Sbjct: 3 CSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDEAS-CPVLTCGPASFQCNSSTCIPQLWA 60
Query: 907 CDGVNNCGDMSDELHC 922
CD +C D SDE
Sbjct: 61 CDNDPDCEDGSDEWPQ 76
Score = 80.4 bits (199), Expect = 2e-18
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 160 CSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKT 219
CS +F C +G CI ++ CD D DC DG SDE +C TC + FQC+++
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDG-----SDEASCPV-LTCGPAS--FQCNSST- 53
Query: 220 CISKSWVCDGTYDCTDRSDENSTYC 244
CI + W CD DC D SDE C
Sbjct: 54 CIPQLWACDNDPDCEDGSDEWPQRC 78
Score = 75.4 bits (186), Expect = 8e-17
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCI 947
C +F+C++ KC+ +CD +C D SDE C TC F+C CI
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCN-------SSTCI 55
Query: 948 SLLNRCDGHPDCPLGEDEHDCM 969
L CD PDC G DE
Sbjct: 56 PQLWACDNDPDCEDGSDEWPQR 77
Score = 74.2 bits (183), Expect = 2e-16
Identities = 32/82 (39%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSAC 126
TC F C G CI + CD D DC D SDE CP+ C CN +S C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGP------ASFQCN-SSTC 54
Query: 127 IEESYICDGQNDCFDMSDEQNC 148
I + + CD DC D SDE
Sbjct: 55 IPQLWACDNDPDCEDGSDEWPQ 76
Score = 73.1 bits (180), Expect = 7e-16
Identities = 28/74 (37%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 126 CIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDC 185
CI ++CD DC D SDE +C P + C F C + CI W CD D DC
Sbjct: 15 CISRQFVCDSDRDCLDGSDEASC-------PVLTCGPASFQCNSSTCIPQLWACDNDPDC 67
Query: 186 NDGNDGLSSDEMNC 199
DG SDE
Sbjct: 68 EDG-----SDEWPQ 76
Score = 71.2 bits (175), Expect = 3e-15
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 291 ETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE---PIVSMWKLVWKCLNGRCLLENYY 347
+TC + F+C +G+C+ + CD + DC D SDE P+++ ++C + C+ + +
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 348 CDGENDCGDNSDEPP 362
CD + DC D SDE P
Sbjct: 61 CDNDPDCEDGSDEWP 75
Score = 68.8 bits (169), Expect = 2e-14
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 372 STHFECQNGNCIPSVLLCNGVNDCDDNSDEDM-NHAECRSLKDLCKHPSHFLCSNGLCIN 430
F C +G CI +C+ DC D SDE C P+ F C++ CI
Sbjct: 5 QAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCG--------PASFQCNSSTCIP 56
Query: 431 ETLTCNDINDCGDNSDEFSC 450
+ C++ DC D SDE+
Sbjct: 57 QLWACDNDPDCEDGSDEWPQ 76
Score = 67.7 bits (166), Expect = 4e-14
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1 MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGS 60
CI CD +C D SDE C + C P F+C+++ CI C+N DC DGS
Sbjct: 14 KCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGS 71
Query: 61 DEADCS 66
DE
Sbjct: 72 DEWPQR 77
Score = 66.1 bits (162), Expect = 1e-13
Identities = 29/79 (36%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQC-DVKC 984
TC +F+C CIS CD DC G DE C C FQC C
Sbjct: 2 TCSQAEFRCHDG-------KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTC 54
Query: 985 ISLALVCDKVFDCLDRSDE 1003
I CD DC D SDE
Sbjct: 55 IPQLWACDNDPDCEDGSDE 73
Score = 51.9 bits (125), Expect = 2e-08
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 1250 KLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLC 1291
K CS+A F+C +G CI ++ CD DC D SDE C C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTC 42
Score = 44.2 bits (105), Expect = 9e-06
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 417 HPSHFLCSNGLCINETLTCNDINDCGDNSDEFSCFVNECN 456
+ F C +G CI+ C+ DC D SDE SC V C
Sbjct: 4 SQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCG 43
Score = 40.7 bits (96), Expect = 1e-04
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 830 CPDNFILESDGKTC-RHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHD 881
C D SD +C C F C + CIP W CD DC D SDE
Sbjct: 28 CLDG----SDEASCPVLTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWP 75
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 111 bits (280), Expect = 2e-25
Identities = 63/326 (19%), Positives = 99/326 (30%), Gaps = 43/326 (13%)
Query: 997 CLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCD 1056
CL + C C P + RC G C+ C CP + CA
Sbjct: 15 CLAKKYTHLSCDKVFCQP-WQRCIEGTCV-----CKLPYQCPK--NGTAVCATNRR--SF 64
Query: 1057 PTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVC--- 1113
PTY + + +C+ + C +G V
Sbjct: 65 PTYCQQKSLECLHPGTKFLNNGTCTAEGK-----------FSVSLKHGNTDSEGIVEVKL 113
Query: 1114 NGEND----CADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTT 1169
++ C N++C F+ + +C
Sbjct: 114 VDQDKTMFICKSSWSMREANVACLDLGFQQGA---DTQRRFKLSDLSINSTECLHVHCR- 169
Query: 1170 KCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYA 1229
+ +C R G D +D + + + F+C N K I +
Sbjct: 170 -----GLETSLAECTFTKRRTMGYQDFADVVCYTQKADS---PMDDFFQCVNGKYISQMK 221
Query: 1230 MCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSP 1289
CDGI++CGD SDE C + C F C +G CI + +C+ DC DE GC
Sbjct: 222 ACDGINDCGDQSDELCCKA---CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGF 278
Query: 1290 LCKFRTCSQICIEKKISNTERTFSCH 1315
+ ++I + R S
Sbjct: 279 ASVAQEETEILTADMDAERRRIKSLL 304
Score = 106 bits (265), Expect = 1e-23
Identities = 61/333 (18%), Positives = 103/333 (30%), Gaps = 42/333 (12%)
Query: 962 GEDEHDCMPKNCTANEF---QCDV-------KCISLALVCDKVFDCLDRSDEPADCTSQT 1011
+ D + K C A ++ CD +CI VC + C + A C +
Sbjct: 4 YTSQEDLVEKKCLAKKYTHLSCDKVFCQPWQRCIEGTCVCKLPYQCP--KNGTAVCATNR 61
Query: 1012 CGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNN--YKCIP 1069
R C K+ +C + + +C ++ + ++ +
Sbjct: 62 ------RSFPTYCQQKSLEC---LHPGTKFLNNGTCTAEGKFSVSLKHGNTDSEGIVEVK 112
Query: 1070 GSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINC- 1128
C + C + F+ G + + + + + ++C
Sbjct: 113 LVDQDKTMFICKSSWSMRE-ANVACLDLGFQ--QGADTQRRFKLSDLSINSTECLHVHCR 169
Query: 1129 NISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNW 1188
+ S E C + G D D + F C N + IS
Sbjct: 170 GLETSLAE--------CTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMK 221
Query: 1189 RCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPS 1248
CDG DC D SD E C AC+ F CK+ CI C+G +C DE C
Sbjct: 222 ACDGINDCGDQSD--ELCC--KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAG 277
Query: 1249 IK--LCSEANFKCANGNCIKKEL-ECDQYNDCG 1278
E A+ + ++ + CG
Sbjct: 278 FASVAQEETEILTADMDAERRRIKSLLPKLSCG 310
Score = 91.5 bits (227), Expect = 6e-19
Identities = 59/303 (19%), Positives = 97/303 (32%), Gaps = 25/303 (8%)
Query: 108 TEKYPLMT-NPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFL 166
+KY ++ + + C CIE + +C C + C + P C
Sbjct: 17 AKKYTHLSCDKVFCQPWQRCIEGTCVCKLPYQCPK-NGTAVCATNRRSFPTY-CQQKSLE 74
Query: 167 CRNGNCILSRW-RCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSW 225
C + C + + ++D + +F C ++ + +
Sbjct: 75 CLHPGTKFLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANV 134
Query: 226 VC-----------DGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTD 274
C + +D S NST C H C E S +C G D
Sbjct: 135 ACLDLGFQQGADTQRRFKLSDLSI-NSTECLHVHCRGLE---TSLAECTFTKRRTMGYQD 190
Query: 275 CIDKSDEHHSQDCLNVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPI-VSMWKLV 333
D D M+ +F+C+NG+ + + CDG NDCGD SDE +
Sbjct: 191 FADVVCYTQKADS-----PMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKG 245
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVN 393
+ C +G C+ Y C+GE DC DE + + +
Sbjct: 246 FHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLP 305
Query: 394 DCD 396
Sbjct: 306 KLS 308
Score = 89.6 bits (222), Expect = 2e-18
Identities = 51/294 (17%), Positives = 76/294 (25%), Gaps = 47/294 (15%)
Query: 199 CDTESTCKANNNVFQCDNNKTCISKSWVCD--------GTYDCTDRSDENSTYCAHS--E 248
C + + + C + CI + VC GT C TYC E
Sbjct: 15 CLAKKYTHLSCDKVFCQPWQRCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLE 74
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKC-------- 300
C + + G C + + + + + F C
Sbjct: 75 CLHPGTKFLNNGTCTAEG---KFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMRE 131
Query: 301 ----------LNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDG 350
G + + + C G
Sbjct: 132 ANVACLDLGFQQGADTQRRFKLSDLSINSTECLHVHCRG----LETSLAECTFTKRRTMG 187
Query: 351 ENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRS 410
D D D F+C NG I + C+G+NDC D SDE C++
Sbjct: 188 YQDFADVVCYTQKA---DSPMDDFFQCVNGKYISQMKACDGINDCGDQSDE----LCCKA 240
Query: 411 LKDLCKHPSHFLCSNGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLC 464
F C +G+CI CN DC DE C ++
Sbjct: 241 C-----QGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEIL 289
Score = 85.7 bits (212), Expect = 3e-17
Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 24/191 (12%)
Query: 46 SSHTCNNINDCGDGSDEADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMT 105
+ ++D S E C + C R D D +
Sbjct: 146 DTQRRFKLSDLSINSTECLHVHCRG--LETSLAECTFTKRRTMGYQDFADVVCYTQKADS 203
Query: 106 NCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKF 165
+ + + I + CDG NDC D SDE C C G F
Sbjct: 204 PMDDFFQCVN--------GKYISQMKACDGINDCGDQSDELCCKA---------CQGKGF 246
Query: 166 LCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSW 225
C++G CI S+++C+G+ DC G DE+ C ++ + +
Sbjct: 247 HCKSGVCIPSQYQCNGEVDCITG-----EDEVGCAGFASVAQEETEILTADMDAERRRIK 301
Query: 226 VCDGTYDCTDR 236
C +
Sbjct: 302 SLLPKLSCGVK 312
Score = 82.7 bits (204), Expect = 4e-16
Identities = 39/187 (20%), Positives = 59/187 (31%), Gaps = 19/187 (10%)
Query: 907 CDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEH 966
++ +HC + C R G+ D
Sbjct: 153 LSDLSINSTECLHVHCRGLETSLAE--------------CTFTKRRTMGYQDFADVVCYT 198
Query: 967 DCMPKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCI 1025
+ + FQC + K IS CD + DC D+SDE C + C C +G CI
Sbjct: 199 QK-ADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDE-LCC--KACQGKGFHCKSGVCI 254
Query: 1026 PKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSD 1085
P +QC+G+VDC EDE ++ + + CG +
Sbjct: 255 PSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLSCGVKNR 314
Query: 1086 EKNCTPR 1092
R
Sbjct: 315 MHIRRKR 321
Score = 81.5 bits (201), Expect = 9e-16
Identities = 44/191 (23%), Positives = 59/191 (30%), Gaps = 30/191 (15%)
Query: 824 GHRQCACPDNFILESDGKTCRHN-CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQ 882
+ + E CR S + C + D D +
Sbjct: 149 RRFKLSDLSINSTECLHVHCRGLETSLAE--------CTFTKRRTMGYQDFADVVCYTQK 200
Query: 883 CPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGT 942
+ FQC N K + CDG+N+CGD SDEL C C F CK
Sbjct: 201 AD--SPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCK--ACQGKGFHCKSGV---- 252
Query: 943 GDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQCDVKCISLALVCDKVFDCLDRSD 1002
CI +C+G DC GEDE C A E + +R
Sbjct: 253 ---CIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTA----------DMDAERRR 299
Query: 1003 EPADCTSQTCG 1013
+ +CG
Sbjct: 300 IKSLLPKLSCG 310
Score = 80.7 bits (199), Expect = 1e-15
Identities = 44/195 (22%), Positives = 61/195 (31%), Gaps = 29/195 (14%)
Query: 125 ACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDND 184
A + + + ++C G C ++ R G D
Sbjct: 145 ADTQRRFKLSDLSINSTECLH------------VHCRG--LETSLAECTFTKRRTMGYQD 190
Query: 185 CNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYC 244
D + C T+ ++ FQC N K IS+ CDG DC D+SDE
Sbjct: 191 FAD---------VVCYTQKADSPMDDFFQCVNGK-YISQMKACDGINDCGDQSDELCCKA 240
Query: 245 AHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGR 304
C F C S G CIP + C+G DCI DE +V
Sbjct: 241 ----CQGKGFHCKS-GVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDA 295
Query: 305 CLLENYYCDGENDCG 319
+ CG
Sbjct: 296 ERRRIKSLLPKLSCG 310
Score = 79.6 bits (196), Expect = 3e-15
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSD 61
C + + D +F+C N K I C+ INDCGD SD
Sbjct: 178 CTFTKRRTMGYQDFADVVCYTQ---KADSPMDDFFQCVNGKYISQMKACDGINDCGDQSD 234
Query: 62 EADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYP 112
E C C FHC G+CI +C+ + DC DE+ C +
Sbjct: 235 ELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEE 285
Score = 78.4 bits (193), Expect = 7e-15
Identities = 46/276 (16%), Positives = 70/276 (25%), Gaps = 52/276 (18%)
Query: 1100 RCANGKCI-RPHYVC--NGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDT 1156
RC G C+ + Y C NG CA + C + +C HP ++ C +
Sbjct: 35 RCIEGTCVCKLPYQCPKNGTAVCATNRRSFPT--YCQQKSLECLHPGTKFLNNGTCTAEG 92
Query: 1157 D-----------------------------CWDGSDEANCTTKCKPNMFTCANHQCISLN 1187
C C F
Sbjct: 93 KFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVACLDLGF--QQGADTQRR 150
Query: 1188 WRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCP 1247
++ S + C G + +C G + D +
Sbjct: 151 FKLSDLSINSTECLHVH--CRG-------LETSLAECTFTKRRTMGYQDFADVVCYTQKA 201
Query: 1248 SIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSP-----LCKFRTCSQICIE 1302
+ F+C NG I + CD NDCGD SDE C + CK C +
Sbjct: 202 --DSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQ 259
Query: 1303 KKISNTERTFSCHCAEGYHMVHGKNKTSSCVANGKS 1338
T + +T A+ +
Sbjct: 260 CNGEVDCITGEDEVGCAGFASVAQEETEILTADMDA 295
Score = 75.0 bits (184), Expect = 9e-14
Identities = 31/149 (20%), Positives = 45/149 (30%), Gaps = 14/149 (9%)
Query: 36 FKCDNNKCILSSHTCNNINDCGDGSDEADCSTC-GNDTFHCDMGMCIHKALRCDVDPDCP 94
+ +C + D D + +D F C G I + CD DC
Sbjct: 171 LETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCG 230
Query: 95 DASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDV 154
D SDE+ C HC CI Y C+G+ DC DE C
Sbjct: 231 DQSDELCCKA--------CQGKGFHCKS-GVCIPSQYQCNGEVDCITGEDEVGCAG---- 277
Query: 155 SPKMNCSGDKFLCRNGNCILSRWRCDGDN 183
+ + L + + R +
Sbjct: 278 FASVAQEETEILTADMDAERRRIKSLLPK 306
Score = 50.3 bits (120), Expect = 4e-06
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSD 61
I + CD + +C D+SDE L C + C+ F C + CI S + CN DC G D
Sbjct: 216 YISQMKACDGINDCGDQSDE--LCC--KACQGKGFHCKSGVCIPSQYQCNGEVDCITGED 271
Query: 62 EADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASD 98
E C+ + +
Sbjct: 272 EVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLS 308
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 100 bits (250), Expect = 2e-25
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRN--CSESEFRCANGKCIRPHY 1111
TC P F C + +CIP SW CD DDDCGD SDE ++F C NG+CI ++
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Query: 1112 VCNGENDCADHSDEINCN 1129
C+ +NDC D+SDE C+
Sbjct: 64 RCDNDNDCGDNSDEAGCS 81
Score = 97.4 bits (243), Expect = 2e-24
Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 1008 TSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKC 1067
+++TC P+ C +GRCIP +W CD D DC +R DE SCA P T F CNN +C
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPT--CFPLTQFTCNNGRC 58
Query: 1068 IPGSWHCDYDDDCGDGSDEKNCT 1090
I +W CD D+DCGD SDE C+
Sbjct: 59 ININWRCDNDNDCGDNSDEAGCS 81
Score = 91.6 bits (228), Expect = 2e-22
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAM 1230
C PN F+CA+ +CI ++W CD + DC D SDE S +F C N +CI+
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWR 64
Query: 1231 CDGIDNCGDNSDESHC 1246
CD ++CGDNSDE+ C
Sbjct: 65 CDNDNDCGDNSDEAGC 80
Score = 90.4 bits (225), Expect = 5e-22
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 1090 TPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNIS---CSKNEFKCSHPAHCI 1146
+ R C ++F CA+G+CI + C+ ++DC D SDE +F C++ CI
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN-GRCI 59
Query: 1147 SSDLVCDGDTDCWDGSDEANCT 1168
+ + CD D DC D SDEA C+
Sbjct: 60 NINWRCDNDNDCGDNSDEAGCS 81
Score = 85.8 bits (213), Expect = 2e-20
Identities = 37/76 (48%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEAN-FKCANGNCIKKELE 1270
C PN+F C + +CI CD D+CGD SDES + C F C NG CI
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWR 64
Query: 1271 CDQYNDCGDNSDEEGC 1286
CD NDCGDNSDE GC
Sbjct: 65 CDNDNDCGDNSDEAGC 80
Score = 83.9 bits (208), Expect = 9e-20
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTK---CKPNMFTCANHQCISLN 1187
+C N+F C+ CI CD D DC D SDE+ FTC N +CI++N
Sbjct: 4 TCPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININ 62
Query: 1188 WRCDGEPDCSDNSDE 1202
WRCD + DC DNSDE
Sbjct: 63 WRCDNDNDCGDNSDE 77
Score = 81.6 bits (202), Expect = 6e-19
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 201 TESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTG 260
+ TC N F C + + CI SW CD DC DRSDE+++ + L +F CN+ G
Sbjct: 1 SARTCPPNQ--FSCASGR-CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN-G 56
Query: 261 QCIPITWVCDGVTDCIDKSDEHH 283
+CI I W CD DC D SDE
Sbjct: 57 RCININWRCDNDNDCGDNSDEAG 79
Score = 81.6 bits (202), Expect = 7e-19
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVN 393
+ C +GRC+ ++ CD ++DCGD SDE SC C T F C NG CI C+ N
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDN 69
Query: 394 DCDDNSDE 401
DC DNSDE
Sbjct: 70 DCGDNSDE 77
Score = 81.2 bits (201), Expect = 9e-19
Identities = 37/80 (46%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 245 AHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGR 304
+ C +F C S G+CIPI+W CD DC D+SDE C F C NGR
Sbjct: 1 SARTCPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESA--SCAYPTCFPLTQFTCNNGR 57
Query: 305 CLLENYYCDGENDCGDNSDE 324
C+ N+ CD +NDCGDNSDE
Sbjct: 58 CININWRCDNDNDCGDNSDE 77
Score = 80.4 bits (199), Expect = 2e-18
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 27 AMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC----STCGNDTFHCDMGMCIH 82
+ R C P F C + +CI S TC+ +DCGD SDE+ + F C+ G CI+
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Query: 83 KALRCDVDPDCPDASDEMHC 102
RCD D DC D SDE C
Sbjct: 61 INWRCDNDNDCGDNSDEAGC 80
Score = 79.6 bits (197), Expect = 3e-18
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 160 CSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKT 219
C ++F C +G CI W CD D+DC D SDE TC F C+N +
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDR-----SDESASCAYPTC-FPLTQFTCNNGR- 57
Query: 220 CISKSWVCDGTYDCTDRSDE 239
CI+ +W CD DC D SDE
Sbjct: 58 CININWRCDNDNDCGDNSDE 77
Score = 78.1 bits (193), Expect = 1e-17
Identities = 38/79 (48%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 845 HNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLP-GQFQCNNTKCLHP 903
C QF C + +CIP W CD DDCGD+SDE C C P QF CNN +C++
Sbjct: 3 RTCPPNQFSC-ASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCINI 61
Query: 904 NTICDGVNNCGDMSDELHC 922
N CD N+CGD SDE C
Sbjct: 62 NWRCDNDNDCGDNSDEAGC 80
Score = 74.6 bits (184), Expect = 2e-16
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 970 PKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDEPADCTSQT-CGPDYIRCDTGRCIPK 1027
+ C N+F C +CI ++ CD DC DRSDE A C T C+ GRCI
Sbjct: 2 ARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCINI 61
Query: 1028 TWQCDGDVDCPNREDE 1043
W+CD D DC + DE
Sbjct: 62 NWRCDNDNDCGDNSDE 77
Score = 73.1 bits (180), Expect = 6e-16
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 361 PPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSH 420
+CP F C +G CIP C+ +DC D SDE + A C +
Sbjct: 2 ARTCP------PNQFSCASGRCIPISWTCDLDDDCGDRSDESASCA-----YPTCFPLTQ 50
Query: 421 FLCSNGLCINETLTCNDINDCGDNSDEFSC 450
F C+NG CIN C++ NDCGDNSDE C
Sbjct: 51 FTCNNGRCININWRCDNDNDCGDNSDEAGC 80
Score = 73.1 bits (180), Expect = 6e-16
Identities = 31/86 (36%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 65 CSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTS 124
TC + F C G CI + CD+D DC D SDE C CN
Sbjct: 2 ARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS----CAYPTCFPLTQFTCN-NG 56
Query: 125 ACIEESYICDGQNDCFDMSDEQNCDQ 150
CI ++ CD NDC D SDE C
Sbjct: 57 RCININWRCDNDNDCGDNSDEAGCSH 82
Score = 73.1 bits (180), Expect = 7e-16
Identities = 30/74 (40%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 126 CIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDC 185
CI S+ CD +DC D SDE + +F C NG CI WRCD DNDC
Sbjct: 17 CIPISWTCDLDDDCGDRSDESASC-----AYPTCFPLTQFTCNNGRCININWRCDNDNDC 71
Query: 186 NDGNDGLSSDEMNC 199
D SDE C
Sbjct: 72 GDN-----SDEAGC 80
Score = 68.5 bits (168), Expect = 3e-14
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDY--TCLNTQFKCKRDPAQGTGDH 945
C P QF C + +C+ + CD ++CGD SDE Y TQF C
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCN-------NGR 57
Query: 946 CISLLNRCDGHPDCPLGEDEHDC 968
CI++ RCD DC DE C
Sbjct: 58 CININWRCDNDNDCGDNSDEAGC 80
Score = 66.9 bits (164), Expect = 1e-13
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSD 61
CIP + TCD +C D+SDE F C+N +CI + C+N NDCGD SD
Sbjct: 17 CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSD 76
Query: 62 EADCS 66
EA CS
Sbjct: 77 EAGCS 81
Score = 61.5 bits (150), Expect = 8e-12
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKN--CTANEFQC-DV 982
TC QF C CI + CD DC DE +F C +
Sbjct: 4 TCPPNQFSCA-------SGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG 56
Query: 983 KCISLALVCDKVFDCLDRSDEPADCT 1008
+CI++ CD DC D SDE A C+
Sbjct: 57 RCININWRCDNDNDCGDNSDE-AGCS 81
Score = 47.3 bits (113), Expect = 7e-07
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSP 1289
C F CA+G CI CD +DCGD SDE +
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAY 42
Score = 41.5 bits (98), Expect = 8e-05
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 837 ESDGKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHD 881
ES QF C +CI W+CD +DCGD SDE
Sbjct: 36 ESASCAYPTCFPLTQFTC-NNGRCININWRCDNDNDCGDNSDEAG 79
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 80.4 bits (199), Expect = 2e-18
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSHYCRNT 511
V+EC++ C ++ ++C C +GY+ + C D +EC + C+ C N
Sbjct: 3 VDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNL-KSKSCEDIDECSENMCAQLCVNY 60
Query: 512 LGSYSCSC--APGYALLSDKHGCKA 534
G Y+C C G+ L D+ C+
Sbjct: 61 PGGYTCYCDGKKGFKLAQDQKSCEV 85
Score = 29.5 bits (67), Expect = 1.3
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 39/104 (37%)
Query: 413 DLCKHPSHFLCSNGLCIN-----------------ETLTCNDINDCGDNSDEFSCFVNEC 455
D C +C +C N ++ +C DI++C +N
Sbjct: 4 DECSLKPS-ICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSEN----------- 51
Query: 456 NVSHGGQLCAHECIDLKIGYKCAC--RKGYQVHPEDKHLCVDTN 497
+CA C++ GY C C +KG+++ D+ C +
Sbjct: 52 -------MCAQLCVNYPGGYTCYCDGKKGFKLAQ-DQKSCEVVS 87
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 78.5 bits (194), Expect = 2e-17
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 441 CGDNSDEFSCF-VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNEC 499
+N NEC ++GG C++ C DLKIGY+C C G+Q+ + C D +EC
Sbjct: 17 TTENLYFQGAMGTNECLDNNGG--CSYVCNDLKIGYECLCPDGFQLVA-QRR-CEDIDEC 72
Query: 500 LD-RPCSHYCRNTLGSYSCSCAPGYALLSDKHGCK 533
D CS C N G Y C C G+ L CK
Sbjct: 73 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 33.8 bits (78), Expect = 0.072
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 806 NPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCR 844
+ C++ C LC+ G+ +C C + F L+ K C+
Sbjct: 70 DECQDPDTCSQLCVNLEGGY-KCQCEEGFQLDPHTKACK 107
Score = 33.1 bits (76), Expect = 0.13
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 33/127 (25%)
Query: 378 QNGNCIPSVLLCNGVNDCDDNSDEDMNH----AECRSLKDLCKH-----PSHFLCS--NG 426
++ + D + EC C + + C +G
Sbjct: 2 KHHHHH----HPMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDG 57
Query: 427 LCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVH 486
+ C DI++C D C+ C++L+ GYKC C +G+Q+
Sbjct: 58 FQLVAQRRCEDIDECQDPD-----------------TCSQLCVNLEGGYKCQCEEGFQLD 100
Query: 487 PEDKHLC 493
P C
Sbjct: 101 P-HTKAC 106
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 69.6 bits (171), Expect = 1e-14
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPC---SHYC 508
++EC +S +C++ ++C C +GY+ C+D +EC P C
Sbjct: 3 IDECRISPDLC-GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 509 RNTLGSYSCSCAPGYALLSDKHGC 532
NT GSY C C PG+ L + C
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISAC 85
Score = 27.3 bits (61), Expect = 8.8
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 16/61 (26%)
Query: 434 TCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLC 493
C DI++C + C + + Y+C C G+Q+ P + C
Sbjct: 42 NCMDIDECQRDP---------------LLCRGGVCHNTEGSYRCECPPGHQLSP-NISAC 85
Query: 494 V 494
+
Sbjct: 86 I 86
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins,
respiratory protein, hexagonal bilayer, dihedral D6
symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP:
b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 68.8 bits (167), Expect = 7e-13
Identities = 31/187 (16%), Positives = 47/187 (25%), Gaps = 16/187 (8%)
Query: 997 CLDRSDEPADCTSQTCGPDYIRC--DTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYT 1054
+ C +C + CI CDG DC N DE P
Sbjct: 38 VSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD-------V 90
Query: 1055 CDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCN 1114
CD + K N +WH C D S+ +R
Sbjct: 91 CDTSVVKAGNVFSGTSTWH-----GCLAREDHVTRITITASKRRKFFTARIWLRALVESE 145
Query: 1115 GENDCADHSDEINCN-ISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKP 1173
E + + N + P L + ++ A C +
Sbjct: 146 LERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNR-GDNERAECHRVTEA 204
Query: 1174 NMFTCAN 1180
+ CA+
Sbjct: 205 TLHQCAD 211
Score = 54.5 bits (130), Expect = 4e-08
Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 8/131 (6%)
Query: 1169 TKCKPNMFTCANH--QCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKC---KNNK 1223
T C+ F C + +CIS CDG DC + DE +C + +
Sbjct: 51 THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHG 110
Query: 1224 CIHR--YAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNS 1281
C+ R + I + ++ E+ +G + Y +
Sbjct: 111 CLAREDHVTRITITASKRRKFFTARIWLRALVES-ELERHGENVTSSFNAKGYYNFASRR 169
Query: 1282 DEEGCDSPLCK 1292
Sbjct: 170 LILLPTDDHDD 180
Score = 53.0 bits (126), Expect = 1e-07
Identities = 22/169 (13%), Positives = 40/169 (23%), Gaps = 21/169 (12%)
Query: 825 HRQCACPDNFILESDGKTC---RHNCSAGQFLC-EKTMKCIPFWWKCDTQDDCGDKSDEH 880
+ P++F+ E D + +C F C +CI CD DC + DE
Sbjct: 28 EAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED 87
Query: 881 DQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDP-- 938
C + N + C D + + T +
Sbjct: 88 PD----VCDTSVVKAGNVFSGTSTW-----HGCLAREDHVTRITITASKRRKFFTARIWL 138
Query: 939 ------AQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQCD 981
++ G+ + + C
Sbjct: 139 RALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCS 187
Score = 53.0 bits (126), Expect = 1e-07
Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 13/183 (7%)
Query: 1088 NCTPRNCSESEFRCA--NGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHC 1145
+C + F+C +CI VC+G DC + DE C + K +
Sbjct: 47 KIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV--CDTSVVKAGNVFSG 104
Query: 1146 ISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIES 1205
S+ C D T + + E + + +
Sbjct: 105 TSTWHGCLARED-----HVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNA 159
Query: 1206 ICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCI 1265
R + N GDN ++ +CA+
Sbjct: 160 -KGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNE---RAECHRVTEATLHQCADLFVT 215
Query: 1266 KKE 1268
+E
Sbjct: 216 LEE 218
Score = 52.6 bits (125), Expect = 2e-07
Identities = 28/174 (16%), Positives = 46/174 (26%), Gaps = 4/174 (2%)
Query: 182 DNDCNDGNDGLSSDEMNCDTESTCKANNNVFQC-DNNKTCISKSWVCDGTYDCTDRSDEN 240
+ + D +S + FQC N + CIS VCDG DC + DE+
Sbjct: 28 EAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED 87
Query: 241 STYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKC 300
C S ++ + I S +
Sbjct: 88 PDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELE 147
Query: 301 LNGRCLLENYYCDGENDCGDNSDEPIVSMWK---LVWKCLNGRCLLENYYCDGE 351
+G + ++ G + + + L C R E C
Sbjct: 148 RHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNERAECHRV 201
Score = 48.7 bits (115), Expect = 4e-06
Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 58 DGSDEADCSTCGNDTFHC--DMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMT 115
+ + + C TF C + CI L CD DC +A DE C T
Sbjct: 43 ARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD---VCD------T 93
Query: 116 NPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDV--SPKMNCSGDKFLCRNGNCI 173
+ + + + C + D + K + + L R+G +
Sbjct: 94 SVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENV 153
Query: 174 LSRWRCDGDNDCNDGNDGLSSDEMNCD 200
S + G + L + + D
Sbjct: 154 TSSFNAKGYYNFASRRLILLPTDDHDD 180
Score = 48.4 bits (114), Expect = 4e-06
Identities = 29/182 (15%), Positives = 50/182 (27%), Gaps = 8/182 (4%)
Query: 146 QNCDQIKDVSPKMNCSGDKFLCR--NGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTES 203
D +C F C CI CDG DC++ +D D CDT S
Sbjct: 39 SEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE---DPDVCDT-S 94
Query: 204 TCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCI 263
KA N C+++ + + T + G+ +
Sbjct: 95 VVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERH-GENV 153
Query: 264 PITWVCDGVTDCIDKSDEHHSQDCLNVE-TCMEGYFKCLNGRCLLENYYCDGENDCGDNS 322
++ G + + D + + + + N R + C D
Sbjct: 154 TSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNERAECHRVTEATLHQCADLF 213
Query: 323 DE 324
Sbjct: 214 VT 215
Score = 48.4 bits (114), Expect = 4e-06
Identities = 24/186 (12%), Positives = 47/186 (25%), Gaps = 6/186 (3%)
Query: 853 LCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQC--NNTKCLHPNTICDGV 910
+ EK + K D + + + HC FQC N +C+ +CDG
Sbjct: 18 IIEKLRTKLDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGH 77
Query: 911 NNCGDMSDE--LHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
+C + DE C G +
Sbjct: 78 KDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIW 137
Query: 969 MPKNCTANEFQCDVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKT 1028
+ + + + ++ + ++ R T + C R +
Sbjct: 138 LRALVESELERHG-ENVTSSFNAKGYYNFASRRLILL-PTDDHDDHLAVVCSFNRGDNER 195
Query: 1029 WQCDGD 1034
+C
Sbjct: 196 AECHRV 201
Score = 39.9 bits (92), Expect = 0.003
Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 12/140 (8%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSD 61
CI CD +CH+ DE C + G + + C D
Sbjct: 67 CISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFS----------GTSTWHGCLARED 116
Query: 62 EADC--STCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIH 119
T + + + +++ + + + L+ P
Sbjct: 117 HVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTD 176
Query: 120 CNFTSACIEESYICDGQNDC 139
+ + S+
Sbjct: 177 DHDDHLAVVCSFNRGDNERA 196
Score = 38.7 bits (89), Expect = 0.007
Identities = 29/195 (14%), Positives = 50/195 (25%), Gaps = 11/195 (5%)
Query: 343 LENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQ--NGNCIPSVLLCNGVNDCDDNSD 400
L+ D + + F+C CI +L+C+G DC + D
Sbjct: 26 LDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHD 85
Query: 401 EDMNHAECRSLKDLCKHPSHFLCSNGLC-------INETLTCNDINDCGDNSDEFSCFVN 453
ED + C + + + C T+T + V
Sbjct: 86 EDPDV--CDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVE 143
Query: 454 ECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSHYCRNTLG 513
HG + + + D HL V + C
Sbjct: 144 SELERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNERAECHRVTE 203
Query: 514 SYSCSCAPGYALLSD 528
+ CA + L +
Sbjct: 204 ATLHQCADLFVTLEE 218
Score = 32.9 bits (74), Expect = 0.51
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 25/118 (21%)
Query: 1201 DEIESICAGLACEPNRFKCKNN--KCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFK 1258
D + G CE F+C N +CI +CDG +C + DE +C + K
Sbjct: 42 DARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD----VCDTSVVK 97
Query: 1259 CANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQICIEKKISNTERTFSCHC 1316
N ++ C D I S + F+
Sbjct: 98 AGNVFSG-----TSTWHGCLARED--------------HVTRITITASKRRKFFTARI 136
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins,
respiratory protein, hexagonal bilayer, dihedral D6
symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP:
b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 66.0 bits (160), Expect = 5e-12
Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 22/174 (12%)
Query: 997 CLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCD 1056
+D+ E + + + D R PK + G + E E P +CD
Sbjct: 6 IIDKLIERTNKITTSISHVESLLD-DRLDPKRIRKAGSLRHRVEELEDP--------SCD 56
Query: 1057 PTYFKC--NNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCN 1114
+C ++ +CI + CD +DC +G DEK+CT + +F
Sbjct: 57 EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG-----------DV 105
Query: 1115 GENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCT 1168
+ C E S + P + + + +TD +
Sbjct: 106 CFDHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPAD 159
Score = 58.3 bits (140), Expect = 2e-09
Identities = 32/166 (19%), Positives = 47/166 (28%), Gaps = 6/166 (3%)
Query: 1087 KNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCS-HPAHC 1145
+ S S + P +E+ SC ++E +C C
Sbjct: 12 ERTNKITTSISHVESLLDDRLDPKR-IRKAGSLRHRVEELEDP-SCDEHEHQCGGDDPQC 69
Query: 1146 ISSDLVCDGDTDCWDGSDEANCTTK-CKPNMFTCANH--QCISLNWRCDGEPDCSDNSDE 1202
IS VCDG DC +G DE +CT + F C S +
Sbjct: 70 ISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAA 129
Query: 1203 IESICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPS 1248
+ A L + DG + D+ H P
Sbjct: 130 FFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPE 175
Score = 54.9 bits (131), Expect = 3e-08
Identities = 36/212 (16%), Positives = 61/212 (28%), Gaps = 15/212 (7%)
Query: 881 DQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDEL-HCVDYTCLNTQFKCKRDPA 939
++ + + L P I G + + D +C + +C D
Sbjct: 12 ERTNKITTSISHVESLLDDRLDPKRIRK----AGSLRHRVEELEDPSCDEHEHQCGGDDP 67
Query: 940 QGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQCDV---KCISL-ALVCDKVF 995
Q CIS L CDGH DC GEDE DC ++F DV C F
Sbjct: 68 Q-----CISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAF 122
Query: 996 DCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTC 1055
+ + + + DG+ + + L
Sbjct: 123 ESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEEDGLGLV 182
Query: 1056 DPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEK 1087
+ N + + H ++ C + +
Sbjct: 183 G-EFDGYNFDRFVGHIVHELSEEVCAEFIFHR 213
Score = 50.6 bits (120), Expect = 8e-07
Identities = 21/175 (12%), Positives = 47/175 (26%), Gaps = 19/175 (10%)
Query: 1144 HCISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEI 1203
H D + + + + R +E
Sbjct: 3 HDEIIDKLIERTNKITTSISHVESLLDDRLDPK------------RIRKAGSLRHRVEE- 49
Query: 1204 ESICAGLACEPNRFKCK--NNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCAN 1261
+C+ + +C + +CI + +CDG ++C + DE C + F
Sbjct: 50 ---LEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTL-PTKAGDKFIGDV 105
Query: 1262 GNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQICIEKKISNTERTFSCHC 1316
+ + ++S +P+ +I E +E +
Sbjct: 106 CFDHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADG 160
Score = 49.1 bits (116), Expect = 3e-06
Identities = 24/169 (14%), Positives = 46/169 (27%), Gaps = 10/169 (5%)
Query: 199 CDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRC-N 257
+ + + + + + K G R +E C+ E +C
Sbjct: 11 IERTNKITTSISHVESLLDDRLDPKRIRKAG--SLRHRVEE----LEDPSCDEHEHQCGG 64
Query: 258 STGQCIPITWVCDGVTDCIDKSDEHH---SQDCLNVETCMEGYFKCLNGRCLLENYYCDG 314
QCI +VCDG DC + DE + + C R +
Sbjct: 65 DDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFES 124
Query: 315 ENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPS 363
+ + + + + + + DGE D+
Sbjct: 125 SSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHP 173
Score = 48.3 bits (114), Expect = 5e-06
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 42 KCILSSHTCNNINDCGDGSDEADCSTCGNDTFHC--DMGMCIHKALRCDVDPDCPDASDE 99
L +E + +C C D CI K CD DC + DE
Sbjct: 29 DDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88
Query: 100 MHCPMTNCTE 109
C +
Sbjct: 89 KDCTLPTKAG 98
Score = 48.3 bits (114), Expect = 5e-06
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 841 KTCRHNCSAGQFLCEKTM-KCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNT 898
+ +C + C +CI + CD +DC + DE D C +F +
Sbjct: 49 ELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD-CTLPTKAGDKFIGDVC 106
Score = 47.1 bits (111), Expect = 1e-05
Identities = 34/231 (14%), Positives = 53/231 (22%), Gaps = 39/231 (16%)
Query: 906 ICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDE 965
+ + N + L +R D G
Sbjct: 10 LIERTNKITTSISHVES-------------------------LLDDRLDPKRIRKAGSLR 44
Query: 966 H---DCMPKNCTANEFQC---DVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRC 1019
H + +C +E QC D +CIS VCD DC + DE DCT T D
Sbjct: 45 HRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKFIG 103
Query: 1020 D--TGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYD 1077
D C + + + + S D +
Sbjct: 104 DVCFDHCTKR--RPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGE 161
Query: 1078 DDCGDGSDEKNCTPRNCSESE---FRCANGKCIRPHYVCNGENDCADHSDE 1125
D + + + + E CA+
Sbjct: 162 YSFADHRLTIHPPEEDGLGLVGEFDGYNFDRFVGHIVHELSEEVCAEFIFH 212
Score = 44.1 bits (103), Expect = 1e-04
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 8/126 (6%)
Query: 1198 DNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANF 1257
+ + I+ + + R I G C E
Sbjct: 2 SHDEIIDKLIERTNKITTSISHVESLLDDR-LDPKRIRKAGSLRHRVEELEDPSCDEHEH 60
Query: 1258 KCA--NGNCIKKELECDQYNDCGDNSDEEGCDSPLC-----KFRTCSQICIEKKISNTER 1310
+C + CI K CD +NDC + DE+ C P C C +++ +
Sbjct: 61 QCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTL 120
Query: 1311 TFSCHC 1316
F
Sbjct: 121 AFESSS 126
Score = 38.7 bits (89), Expect = 0.008
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 338 NGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIP 384
+ +C+ + + CDG NDC + DE T + + +C
Sbjct: 66 DPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTK 112
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 62.8 bits (153), Expect = 2e-11
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 444 NSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRP 503
+ C + + + + C +G++ +P + D +EC + P
Sbjct: 73 SKASCCCSLGKAWGTPCE--MCPAVNTSEYKILCPGGEGFRPNP-ITVILEDIDECQELP 129
Query: 504 ---CSHYCRNTLGSYSCSCAPGYALLSDKHGC 532
C NT GS+ C C GY L D C
Sbjct: 130 GLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein;
HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 58.8 bits (143), Expect = 2e-11
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 1088 NCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCN 1129
+ + C + +F+C N +CI + C+ ++DC DHSDE +C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 56.5 bits (137), Expect = 1e-10
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCT 1090
C+ F+C N +CIP W CD DDDC D SDE +C
Sbjct: 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 51.9 bits (125), Expect = 7e-09
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1166 NCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
+C+ + F C N +CI WRCD + DC D+SDE
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 50.7 bits (122), Expect = 2e-08
Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 155 SPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNC 199
P C D+F CRN CI S WRCD D+DC D SDE +C
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDH-----SDEDDC 42
Score = 49.6 bits (119), Expect = 4e-08
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 26 CAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC 65
++C F+C N +CI S C+ +DC D SDE DC
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 49.6 bits (119), Expect = 5e-08
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1005 ADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
++ C D +C RCIP W+CD D DC + DE
Sbjct: 1 GSGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 49.6 bits (119), Expect = 5e-08
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1207 CAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCP 1247
CE ++F+C+N +CI CD D+C D+SDE CP
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 48.8 bits (117), Expect = 8e-08
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 1246 CPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
K C + F+C N CI CD+ +DC D+SDE+ C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 47.3 bits (113), Expect = 3e-07
Identities = 18/38 (47%), Positives = 18/38 (47%)
Query: 66 STCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCP 103
C D F C CI RCD D DC D SDE CP
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 46.9 bits (112), Expect = 4e-07
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 363 SCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDED 402
S P +C F+C+N CIPSV C+ +DC D+SDED
Sbjct: 2 SGPAKEC-EKDQFQCRNERCIPSVWRCDEDDDCLDHSDED 40
Score = 46.5 bits (111), Expect = 6e-07
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 244 CAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHH 283
EC +F+C + +CIP W CD DC+D SDE
Sbjct: 3 GPAKECEKDQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDD 41
Score = 46.1 bits (110), Expect = 8e-07
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 882 QCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHC 922
P C QFQC N +C+ CD ++C D SDE C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 45.7 bits (109), Expect = 9e-07
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 840 GKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQ 885
G C QF C + +CIP W+CD DDC D SDE D CP+
Sbjct: 1 GSGPAKECEKDQFQC-RNERCIPSVWRCDEDDDCLDHSDEDD-CPK 44
Score = 44.9 bits (107), Expect = 2e-06
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1127 NCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCT 1168
C K++F+C + CI S CD D DC D SDE +C
Sbjct: 3 GPAKECEKDQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 44.6 bits (106), Expect = 2e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 292 TCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
C + F+C N RC+ + CD ++DC D+SDE
Sbjct: 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 41.5 bits (98), Expect = 3e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 418 PSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
F C N CI C++ +DC D+SDE C
Sbjct: 10 KDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 40.3 bits (95), Expect = 7e-05
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 199 CDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE 239
C+ + FQC N + CI W CD DC D SDE
Sbjct: 2 SGPAKECEKDQ--FQCRNER-CIPSVWRCDEDDDCLDHSDE 39
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 968 CMPKNCTANEFQCDV-KCISLALVCDKVFDCLDRSDEPADCT 1008
K C ++FQC +CI CD+ DCLD SDE DC
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE-DDCP 43
Score = 39.2 bits (92), Expect = 2e-04
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPPSCPK 366
++C N RC+ + CD ++DC D+SDE CPK
Sbjct: 13 FQCRNERCIPSVWRCDEDDDCLDHSDE-DDCPK 44
Score = 35.3 bits (82), Expect = 0.004
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 126 CIEESYICDGQNDCFDMSDEQNCDQ 150
CI + CD +DC D SDE +C +
Sbjct: 20 CIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 33.8 bits (78), Expect = 0.019
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 922 CVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
C QF+C+ + CI + RCD DC DE DC
Sbjct: 3 GPAKECEKDQFQCR-------NERCIPSVWRCDEDDDCLDHSDEDDC 42
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 59.9 bits (145), Expect = 3e-11
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCAN--HQCISLNW 1188
+C + F C C+ +CDGD DC DG+DE+ C N + L
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG-CLYNSTGSGSGSGSTEELRV 66
Query: 1189 RCDGEPDCSD 1198
R
Sbjct: 67 RLASHLRKLR 76
Score = 57.6 bits (139), Expect = 2e-10
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 1054 TCDPTYFKC-NNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYV 1112
TC P+ F C + C+P W CD D DC DG+DE + + +G
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVR 67
Query: 1113 CNGENDCAD 1121
Sbjct: 68 LASHLRKLR 76
Score = 54.9 bits (132), Expect = 2e-09
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 1088 NCTPRNCSESEFRCAN-GKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKC-SHPAHC 1145
+ C S F C C+ ++C+G+ DCAD +DE C N S
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA-GCLYNSTGSGSGSGST 61
Query: 1146 ISSDLVCDG 1154
+
Sbjct: 62 EELRVRLAS 70
Score = 51.8 bits (124), Expect = 2e-08
Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 244 CAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNG 303
C F C T C+P W+CDG DC D +DE + CL T +G
Sbjct: 4 LEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTG----SGSGSG 59
Query: 304 RCLLENYYCDGENDCGD 320
Sbjct: 60 STEELRVRLASHLRKLR 76
Score = 50.6 bits (121), Expect = 5e-08
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 26 CAMRDCRPGYFKCDN-NKCILSSHTCNNINDCGDGSDEADCSTCGNDTFHCDMG--MCIH 82
+ C P F C + C+ C+ DC DG+DE+ + C ++ G
Sbjct: 4 LEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEE 63
Query: 83 KALRCD 88
+R
Sbjct: 64 LRVRLA 69
Score = 49.9 bits (119), Expect = 9e-08
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 1005 ADCTSQTCGPDYIRC-DTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCN 1063
+ +TCGP C T C+P+ W CDGD DC + DE + C
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA------GCLYNSTGSG 55
Query: 1064 N--YKCIPGSWHCD 1075
+
Sbjct: 56 SGSGSTEELRVRLA 69
Score = 49.5 bits (118), Expect = 1e-07
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 1171 CKPNMFTCAN-HQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYA 1229
C P+ F+C H C+ W CDG+ DC+D +DE AG +
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI--AAGCLYNSTGSGSGSGSTEELRV 66
Query: 1230 MCDG 1233
Sbjct: 67 RLAS 70
Score = 49.1 bits (117), Expect = 2e-07
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 201 TESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNST- 259
TC ++ F C C+ + W+CDG DC D +DE+ C S
Sbjct: 5 EGKTCGPSS--FSCPGTHVCVPERWLCDGDKDCADGADESIAAG----CLYNSTGSGSGS 58
Query: 260 GQCIPITWVCDGVTDCIDK 278
G + + K
Sbjct: 59 GSTEELRVRLASHLRKLRK 77
Score = 48.3 bits (115), Expect = 4e-07
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 844 RHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKC 900
C F C T C+P W CD DC D +DE CL +
Sbjct: 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG---CLYNSTGSGSGSG 59
Score = 47.9 bits (114), Expect = 5e-07
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 1205 SICAGLACEPNRFKCKN-NKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGN 1263
S G C P+ F C + C+ +CDG +C D +DES C + +G+
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG---CLYNSTGSGSGS 58
Query: 1264 --CIKKELECDQYNDCGD 1279
+ + +
Sbjct: 59 GSTEELRVRLASHLRKLR 76
Score = 45.6 bits (108), Expect = 3e-06
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 156 PKMNCSGDKFLCRNGN-CILSRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQC 214
C F C + C+ RW CDGD DC DG +DE + C N+
Sbjct: 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADG-----ADESIA---AGCLYNS--TGS 54
Query: 215 DN-NKTCISKSWVCDG 229
+ + +
Sbjct: 55 GSGSGSTEELRVRLAS 70
Score = 45.2 bits (107), Expect = 4e-06
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 119 HCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGN--CILSR 176
C T C+ E ++CDG DC D +DE C + +G+ R
Sbjct: 15 SCPGTHVCVPERWLCDGDKDCADGADESIAA---------GCLYNSTGSGSGSGSTEELR 65
Query: 177 WRCDG 181
R
Sbjct: 66 VRLAS 70
Score = 44.8 bits (106), Expect = 5e-06
Identities = 18/79 (22%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 882 QCPQFHCLPGQFQCNNT-KCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQ 940
+ C P F C T C+ +CDG +C D +DE CL
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA--GCLYNSTGS-----G 55
Query: 941 GTGDHCISLLNRCDGHPDC 959
L R H
Sbjct: 56 SGSGSTEELRVRLASHLRK 74
Score = 43.7 bits (103), Expect = 1e-05
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 967 DCMPKNCTANEFQC--DVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTG-- 1022
K C + F C C+ +CD DC D +DE + C + +G
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE-SIA--AGCLYNSTGSGSGSG 59
Query: 1023 RCIPKTWQCDGDVDC 1037
+ +
Sbjct: 60 STEELRVRLASHLRK 74
Score = 42.9 bits (101), Expect = 2e-05
Identities = 16/66 (24%), Positives = 18/66 (27%), Gaps = 8/66 (12%)
Query: 921 HCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQC 980
TC + F C C+ CDG DC G DE C N
Sbjct: 3 KLEGKTCGPSSFSCP------GTHVCVPERWLCDGDKDCADGADESIA--AGCLYNSTGS 54
Query: 981 DVKCIS 986
S
Sbjct: 55 GSGSGS 60
Score = 39.5 bits (92), Expect = 4e-04
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 10/78 (12%)
Query: 66 STCGNDTFHC-DMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTS 124
TCG +F C +C+ + CD D DC D +DE S
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNS--------TGSGSGS 58
Query: 125 ACIEESYI-CDGQNDCFD 141
EE +
Sbjct: 59 GSTEELRVRLASHLRKLR 76
Score = 37.9 bits (88), Expect = 0.001
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 1244 SHCPSIKLCSEANFKCANGN-CIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCS 1297
S K C ++F C + C+ + CD DC D +DE L
Sbjct: 2 SKLEG-KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSG 55
Score = 36.4 bits (84), Expect = 0.005
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 292 TCMEGYFKCLN-GRCLLENYYCDGENDCGDNSDE 324
TC F C C+ E + CDG+ DC D +DE
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 34.1 bits (78), Expect = 0.039
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 338 NGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNG 391
C+ E + CDG+ DC D +DE + NST +G+ +
Sbjct: 19 THVCVPERWLCDGDKDCADGADESIAAGCL--YNSTGSGSGSGSTEELRVRLAS 70
Score = 34.1 bits (78), Expect = 0.040
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 363 SCPKTDCDNSTHFECQNGN-CIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSH 420
C + F C + C+P LC+G DC D +DE A C S
Sbjct: 3 KLEGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADE-SIAAGCLYNSTGSGSGSG 59
Score = 32.1 bits (73), Expect = 0.19
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 418 PSHFLCSN-GLCINETLTCNDINDCGDNSDEFSCFVNECN 456
PS F C +C+ E C+ DC D +DE N
Sbjct: 11 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYN 50
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 58.8 bits (143), Expect = 8e-11
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRP--CSHYCR 509
++EC +CI+ Y+C C GY + + CVDT+EC + C+
Sbjct: 5 MDECKEPDVC--KHGQCINTDGSYRCECPFGYILAGNE---CVDTDECSVGNPCGNGTCK 59
Query: 510 NTLGSYSCSCAPGYALLSDKHGCK 533
N +G + C+C G+ C+
Sbjct: 60 NVIGGFECTCEEGFE-PGPMMTCE 82
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 63.9 bits (156), Expect = 8e-11
Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 607 PATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYM 666
P LT+ G +++ + + I G ++ + P GI P G +
Sbjct: 55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDI 112
Query: 667 YWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLN 726
++T+ N IG+ DG + + S+P+ +T+ N L++ + + I +
Sbjct: 113 WFTEMNGNR-IGRITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITES 170
Query: 727 GE 728
G+
Sbjct: 171 GD 172
Score = 61.2 bits (149), Expect = 6e-10
Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 13/170 (7%)
Query: 541 NLLFTNKY--YIREVTQAGVMTIRIHNQTNA--VGLDFDWVDNCLYWSDVTMHGSSIRR- 595
++ FT I +T G + + + DN L++++ ++I R
Sbjct: 111 DIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWFTE--NQNNAIGRI 167
Query: 596 --SCNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQE 653
S + ++ ++ PA+ P G+T L++ + + I G + I
Sbjct: 168 TESGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITTSGEITEFKIPTPNAR 226
Query: 654 PRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTI 703
P I +++T+WG N IG+ + + I + P+ +
Sbjct: 227 PHAITAGAG-IDLWFTEWGANK-IGRLTSNNIIEEYPIQIKSAEPHGICF 274
Score = 60.0 bits (146), Expect = 1e-09
Identities = 31/193 (16%), Positives = 69/193 (35%), Gaps = 20/193 (10%)
Query: 607 PATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYM 666
T P G+TV G ++ + I LDG+ + + + + ++ G +
Sbjct: 13 QDTGPYGITVSDKG-KVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSD-GEV 70
Query: 667 YWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLN 726
++T+ N IG+ G + + S P +T I +++N
Sbjct: 71 WFTENAAN-KIGRITKKGIIKEYTLPNPDSAPYGITEG-----------PNGDIWFTEMN 118
Query: 727 GENIKII----VSRRMDPTINLHHVFALAV-FEDHLFWTDWEMKSIERCDKYTGKNCTSV 781
G I I R + + + + ++ L++T+ + +I R + +G
Sbjct: 119 GNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFK 177
Query: 782 VKNLVHKPMDLRV 794
+ P+ +
Sbjct: 178 IPTPASGPVGITK 190
Score = 45.8 bits (109), Expect = 6e-05
Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 15/153 (9%)
Query: 541 NLLFTNKY--YIREVTQAG-VMTIRIHNQTNA-VGLDFDWVDNCLYWSDVTMHGSSIRR- 595
L FT I +T++G + +I + VG+ D+ L++ ++ G+ I R
Sbjct: 153 ALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFVEII--GNKIGRI 209
Query: 596 --SCNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQE 653
S ++ ++ P P +T +L++ + G + I + + I E
Sbjct: 210 TTSGEITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSNNIIEEYPIQIKSAE 268
Query: 654 PRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSN 686
P GI + +++ + IGK + N
Sbjct: 269 PHGICFDG--ETIWFAM--ECDKIGKLTLIKDN 297
Score = 43.1 bits (102), Expect = 4e-04
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 638 LDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSW 697
++ + +++ + P GI ++ G ++ T N I +DG + + +
Sbjct: 1 MEFKLQELNLTNQDTGPYGITVSDK-GKVWITQHKANM-ISCINLDGKITEYPLPTPDAK 58
Query: 698 PNALTISYETNELFWGDAHEDYIAVSDLNGE 728
LTIS E+++ + + I G
Sbjct: 59 VMCLTIS-SDGEVWFTENAANKIGRITKKGI 88
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1
h.1.32.1
Length = 217
Score = 62.2 bits (150), Expect = 9e-11
Identities = 21/178 (11%), Positives = 35/178 (19%), Gaps = 9/178 (5%)
Query: 996 DCLDRSDEPADCTSQTCGPDYIRC--DTGRCIPKTWQCDGDVDCPNREDEPPS-CADPNL 1052
++ C C D CI CDG+ DC + DE P C+
Sbjct: 38 TIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNIT 97
Query: 1053 YTCDPTYFKCNNYKCIPGSW-HCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHY 1111
+ C + H + +
Sbjct: 98 HVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTT 157
Query: 1112 VCNGENDCADHSDEINC-NISCSKNEFKCSHP----AHCISSDLVCDGDTDCWDGSDE 1164
G + + C H +V C + +
Sbjct: 158 QLRGFYNFGKRELLLAPLKGQSEGYGVICDFNLGDDDHADCKIVVPSSLFVCAHFNAQ 215
Score = 56.4 bits (135), Expect = 8e-09
Identities = 20/151 (13%), Positives = 36/151 (23%), Gaps = 10/151 (6%)
Query: 1152 CDGDTDCWDGSDEANCTTK-----CKPNMFTCANH--QCISLNWRCDGEPDCSDNSDEIE 1204
D D + C + C +CI CDGE DC D SDE
Sbjct: 30 LTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP 89
Query: 1205 SICAGLACEPNR---FKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKCAN 1261
C+ C + + + L + +++
Sbjct: 90 ETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDE 149
Query: 1262 GNCIKKELECDQYNDCGDNSDEEGCDSPLCK 1292
+ + + + G +
Sbjct: 150 HDHTVSTTQLRGFYNFGKRELLLAPLKGQSE 180
Score = 55.3 bits (132), Expect = 2e-08
Identities = 31/206 (15%), Positives = 53/206 (25%), Gaps = 36/206 (17%)
Query: 1031 CDGDVDCPNREDEPPSCADPNLYTCDPTYFKC--NNYKCIPGSWHCDYDDDCGDGSDEKN 1088
DVD ++ + CD +C + +CI CD + DC DGSDE
Sbjct: 30 LTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE-- 87
Query: 1089 CTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISS 1148
P CS + + + C D + + ++ + K P
Sbjct: 88 -DPETCSLNITHVGSSYTGLATW-----TSCEDLNPDHAI-VTITAAHRKSFFPNRVWLR 140
Query: 1149 DLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICA 1208
+ + H + G + +
Sbjct: 141 ATLS-----------------------YELDEHDHTVSTTQLRGFYNFGKRELLL--APL 175
Query: 1209 GLACEPNRFKCKNNKCIHRYAMCDGI 1234
E C N +A C +
Sbjct: 176 KGQSEGYGVICDFNLGDDDHADCKIV 201
Score = 51.4 bits (122), Expect = 4e-07
Identities = 26/176 (14%), Positives = 42/176 (23%), Gaps = 8/176 (4%)
Query: 9 CDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNN--KCILSSHTCNNINDCGDGSDEADCS 66
D + I C +C + +CI C+ DC DGSDE D
Sbjct: 32 HDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE-DPE 90
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSAC 126
TC + H C D + + + N + T +
Sbjct: 91 TCSLNITHVGSSYTG-----LATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSY 145
Query: 127 IEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGD 182
+ + ++ K G +C C
Sbjct: 146 ELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFNLGDDDHADCKIV 201
Score = 51.4 bits (122), Expect = 4e-07
Identities = 25/211 (11%), Positives = 50/211 (23%), Gaps = 22/211 (10%)
Query: 163 DKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNK-TCI 221
D + + + D D ++ E C + +C + CI
Sbjct: 14 DYLAKKLHDIEEEYNKLTHDVDKKTIRQ--LKARISNLEEHHCDEHE--SECRGDVPECI 69
Query: 222 SKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDG----VTDCID 277
CDG DC D SDE+ C+ + + S+ + C+
Sbjct: 70 HDLLFCDGEKDCRDGSDEDPETCSLNITH-----VGSSYTGLATWTSCEDLNPDHAIVTI 124
Query: 278 KSDEHHSQDCLNVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPIVSMWKL----- 332
+ S V ++ + G + G +
Sbjct: 125 TAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGV 184
Query: 333 ---VWKCLNGRCLLENYYCDGENDCGDNSDE 360
+ + C + +
Sbjct: 185 ICDFNLGDDDHADCKIVVPSSLFVCAHFNAQ 215
Score = 46.4 bits (109), Expect = 2e-05
Identities = 22/164 (13%), Positives = 39/164 (23%), Gaps = 7/164 (4%)
Query: 348 CDGENDCGDNSDEPPSCPKTDCDNSTHFECQN--GNCIPSVLLCNGVNDCDDNSDEDMNH 405
D + S + + EC+ CI +L C+G DC D SDED
Sbjct: 32 HDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED--P 89
Query: 406 AECRSLKDLCKHPSHFLCSNGLCIN---ETLTCNDINDCGDNSDEFSCFVNECNVSHGGQ 462
C L + C + + + ++ +
Sbjct: 90 ETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDE 149
Query: 463 LCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSH 506
G+ ++ + P C
Sbjct: 150 HDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFNLGDD 193
Score = 44.9 bits (105), Expect = 7e-05
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 25/132 (18%)
Query: 1187 NWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNN--KCIHRYAMCDGIDNCGDNSDES 1244
D + S C+ + +C+ + +CIH CDG +C D SDE
Sbjct: 29 KLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED 88
Query: 1245 HCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQICIEKK 1304
C +S C+ +
Sbjct: 89 PE-----------------------TCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTIT 125
Query: 1305 ISNTERTFSCHC 1316
++ + F
Sbjct: 126 AAHRKSFFPNRV 137
Score = 43.0 bits (100), Expect = 3e-04
Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 17/145 (11%)
Query: 845 HNCSAGQFLCE-KTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHP 903
H+C + C +CI CD + DC D SDE + C ++
Sbjct: 52 HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE----TCSLNITHVGSSYTGLA 107
Query: 904 NTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGT-------GDHCISLLNRCDGH 956
+C D++ + V T + + + G
Sbjct: 108 TW-----TSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGF 162
Query: 957 PDCPLGEDEHDCMPKNCTANEFQCD 981
+ E + CD
Sbjct: 163 YNFGKRELLLAPLKGQSEGYGVICD 187
Score = 40.3 bits (93), Expect = 0.002
Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 21/179 (11%)
Query: 82 HKALRCDVDPDCPDASDEM--HCPMTNCTEKYPLMTNPIHC-NFTSACIEESYICDGQND 138
+ L DVD + +C E + C CI + CDG+ D
Sbjct: 27 YNKLTHDVDKKTIRQLKARISNLEEHHCDE------HESECRGDVPECIHDLLFCDGEKD 80
Query: 139 CFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMN 198
C D SDE CS + + L+ W D + + +++
Sbjct: 81 CRDGSDEDPE----------TCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRK 130
Query: 199 CDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCN 257
+ + + + G Y+ R E + + C+
Sbjct: 131 SFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKR--ELLLAPLKGQSEGYGVICD 187
Score = 39.1 bits (90), Expect = 0.006
Identities = 29/233 (12%), Positives = 60/233 (25%), Gaps = 37/233 (15%)
Query: 8 TCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCST 67
+ ++K + +R + + + C C
Sbjct: 19 KLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRG--------------- 63
Query: 68 CGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACI 127
D+ CIH L CD + DC D SDE C+ N H + +
Sbjct: 64 --------DVPECIHDLLFCDGEKDCRDGSDEDPE---TCS------LNITHVGSSYTGL 106
Query: 128 EESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDK-FLCRNGNCILSRWRCDGDNDCN 186
C+ N + + ++ + + +S + G +
Sbjct: 107 ATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFG 166
Query: 187 DGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE 239
L+ + + N ++ K V + C + +
Sbjct: 167 KRELLLAPLKGQSEGYGVICDFNL----GDDDHADCKIVVPSSLFVCAHFNAQ 215
Score = 36.8 bits (84), Expect = 0.028
Identities = 18/151 (11%), Positives = 36/151 (23%), Gaps = 8/151 (5%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPG---YFKCDNNKCILSS--HTCNNINDC 56
CI CD +C D SDE C++ G C + H I
Sbjct: 68 CIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAA 127
Query: 57 GDGSD-EADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMT 115
S ++ D + + + +
Sbjct: 128 HRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICD 187
Query: 116 NPIHCNFTSACIEESYICDGQNDCFDMSDEQ 146
+ + + C + + C + ++
Sbjct: 188 FNLGDDDHADC--KIVVPSSLFVCAHFNAQR 216
Score = 36.8 bits (84), Expect = 0.028
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 5/119 (4%)
Query: 338 NGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDD 397
C+ + +CDGE DC D SDE P C + + + + C +N
Sbjct: 65 VPECIHDLLFCDGEKDCRDGSDEDPE----TCSLNITHVGSSYTGLATWTSCEDLNPDHA 120
Query: 398 NSDEDMNHAECR-SLKDLCKHPSHFLCSNGLCINETLTCNDINDCGDNSDEFSCFVNEC 455
H + + + + T + G + +
Sbjct: 121 IVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQS 179
Score = 29.9 bits (66), Expect = 4.5
Identities = 21/144 (14%), Positives = 33/144 (22%), Gaps = 36/144 (25%)
Query: 389 CNGVNDCDDNSDEDMNHAECRSLKDLCKH-------PSHFLCSN--GLCINETLTCNDIN 439
+ + + + D++ R LK + C CI++ L C+
Sbjct: 20 LHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEK 79
Query: 440 DCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNEC 499
DC D SDE C C
Sbjct: 80 DCRDGSDEDPE---------------------------TCSLNITHVGSSYTGLATWTSC 112
Query: 500 LDRPCSHYCRNTLGSYSCSCAPGY 523
D H ++ S P
Sbjct: 113 EDLNPDHAIVTITAAHRKSFFPNR 136
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 58.9 bits (143), Expect = 1e-10
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 440 DCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNEC 499
C + + C + C +C D C C +GY +D +C D +EC
Sbjct: 27 VCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYI--LDDGFICTDIDEC 83
Query: 500 LDR-PCSHYCRNTLGSYSCSCAPGYALLSD 528
+ CS C N G++ C C P AL
Sbjct: 84 ENGGFCSGVCHNLPGTFECICGPDSALAGQ 113
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 56.2 bits (136), Expect = 2e-10
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 1167 CTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICA 1208
+C+P F CAN +CI W+CDG+ DC DNSDE ++C
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 55.4 bits (134), Expect = 4e-10
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCT 1090
C P F C N +CI W CD D+DC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 54.6 bits (132), Expect = 7e-10
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 1090 TPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCN 1129
+P C EF CAN +CI+ + C+G+NDC D+SDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 48.8 bits (117), Expect = 9e-08
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 156 PKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNC 199
C +F C N CI RW+CDGDNDC D SDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDN-----SDEAPA 40
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
C F CAN CI++ +CD NDC DNSDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 29 RDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC 65
C+PG F C N++CI C+ NDC D SDEA
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 46.9 bits (112), Expect = 4e-07
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 843 CRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFH 887
C G+F C +CI WKCD +DC D SDE H
Sbjct: 2 SPPQCQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDEAPALCHQH 45
Score = 46.5 bits (111), Expect = 5e-07
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 1128 CNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCT 1168
C EF C++ + CI CDGD DC D SDEA
Sbjct: 2 SPPQCQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 46.5 bits (111), Expect = 5e-07
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 292 TCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
C G F C N RC+ E + CDG+NDC DNSDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 46.1 bits (110), Expect = 7e-07
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 1008 TSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSC 1047
+ C P C RCI + W+CDGD DC + DE P+
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 45.8 bits (109), Expect = 1e-06
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC 1246
C+P F C N++CI CDG ++C DNSDE+
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 45.0 bits (107), Expect = 2e-06
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHC 102
C F C CI + +CD D DC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 44.2 bits (105), Expect = 4e-06
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 248 ECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQ 285
+C EF C + +CI W CDG DC+D SDE +
Sbjct: 5 QCQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 43.8 bits (104), Expect = 5e-06
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 204 TCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAH 246
C+ F C N++ CI + W CDG DC D SDE C
Sbjct: 5 QCQPGE--FACANSR-CIQERWKCDGDNDCLDNSDEAPALCHQ 44
Score = 43.1 bits (102), Expect = 8e-06
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 360 EPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDED 402
PP C F C N CI C+G NDC DNSDE
Sbjct: 2 SPPQCQ------PGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 43.1 bits (102), Expect = 1e-05
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCV 923
C PG+F C N++C+ CDG N+C D SDE +
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 41.1 bits (97), Expect = 5e-05
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 418 PSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
P F C+N CI E C+ NDC DNSDE
Sbjct: 8 PGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 40.4 bits (95), Expect = 9e-05
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPPSC 364
+ C N RC+ E + CDG+NDC DNSDE P+
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 36.1 bits (84), Expect = 0.003
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 970 PKNCTANEFQC-DVKCISLALVCDKVFDCLDRSDE 1003
P C EF C + +CI CD DCLD SDE
Sbjct: 3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 35.0 bits (81), Expect = 0.006
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 126 CIEESYICDGQNDCFDMSDEQNC 148
CI+E + CDG NDC D SDE
Sbjct: 18 CIQERWKCDGDNDCLDNSDEAPA 40
Score = 33.8 bits (78), Expect = 0.016
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCM 969
C +F C CI +CDG DC DE +
Sbjct: 5 QCQPGEFACANS-------RCIQERWKCDGDNDCLDNSDEAPAL 41
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 55.4 bits (134), Expect = 4e-10
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 1128 CNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKC 1171
++C+ +FKC+ + CI+S CDG DC D SDEA C T+
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRP 46
Score = 53.5 bits (129), Expect = 2e-09
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 1089 CTPRNCSESEFRCANGK-CIRPHYVCNGENDCADHSDEINC 1128
NC+ ++F+CA+G CI Y C+G DC D+SDE C
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 52.7 bits (127), Expect = 3e-09
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 1053 YTCDPTYFKC-NNYKCIPGSWHCDYDDDCGDGSDEKNCTPR 1092
C FKC + CI + CD DC D SDE C R
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTR 45
Score = 49.2 bits (118), Expect = 6e-08
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 244 CAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
C +F+C CI + CDGV DC D SDE
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 49.2 bits (118), Expect = 7e-08
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 1167 CTTKCKPNMFTCAN-HQCISLNWRCDGEPDCSDNSDEI 1203
C F CA+ CI+ +RCDG DC DNSDE
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEA 40
Score = 48.5 bits (116), Expect = 1e-07
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 155 SPKMNCSGDKFLCRNGN-CILSRWRCDGDNDCNDGNDGLSSDEMNCDT 201
+ +NC+ +F C +G+ CI SR+RCDG DC D SDE C T
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDN-----SDEAGCPT 44
Score = 48.1 bits (115), Expect = 2e-07
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 26 CAMRDCRPGYFKCDNNK-CILSSHTCNNINDCGDGSDEADCSTC 68
+ +C FKC + CI S + C+ + DC D SDEA C T
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTR 45
Score = 47.3 bits (113), Expect = 3e-07
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 843 CRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCP 884
NC++ QF C CI ++CD DC D SDE CP
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG-CP 43
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 202 ESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE 239
C + F+C + +CI+ + CDG YDC D SDE
Sbjct: 4 VLNCTSAQ--FKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 44.2 bits (105), Expect = 3e-06
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 1207 CAGLACEPNRFKCKNNK-CIHRYAMCDGIDNCGDNSDESHCPS 1248
L C +FKC + CI+ CDG+ +C DNSDE+ CP+
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 43.5 bits (103), Expect = 6e-06
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 1007 CTSQTCGPDYIRCDTGR-CIPKTWQCDGDVDCPNREDE 1043
C +C G CI ++CDG DC + DE
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 43.5 bits (103), Expect = 7e-06
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 67 TCGNDTFHCDMG-MCIHKALRCDVDPDCPDASDEMHCP 103
C + F C G CI+ RCD DC D SDE CP
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43
Score = 43.5 bits (103), Expect = 8e-06
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 1252 CSEANFKCANGN-CIKKELECDQYNDCGDNSDEEGCDSP 1289
C+ A FKCA+G+ CI CD DC DNSDE GC +
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTR 45
Score = 42.7 bits (101), Expect = 1e-05
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 968 CMPKNCTANEFQCD--VKCISLALVCDKVFDCLDRSDEPADCTSQTCG 1013
M NCT+ +F+C CI+ CD V+DC D SDE A C ++ G
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE-AGCPTRPPG 48
Score = 42.7 bits (101), Expect = 1e-05
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 922 CVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
+ C + QFKC G CI+ RCDG DC DE C
Sbjct: 2 AMVLNCTSAQFKC------ADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 41.5 bits (98), Expect = 3e-05
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 883 CPQFHCLPGQFQC-NNTKCLHPNTICDGVNNCGDMSDELHC 922
+C QF+C + + C++ CDGV +C D SDE C
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 40.4 bits (95), Expect = 8e-05
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 292 TCMEGYFKCLNGR-CLLENYYCDGENDCGDNSDE 324
C FKC +G C+ Y CDG DC DNSDE
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 40.4 bits (95), Expect = 9e-05
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 102 CPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSDEQNCD 149
+ NCT C S+CI Y CDG DC D SDE C
Sbjct: 2 AMVLNCTSAQ------FKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43
Score = 40.0 bits (94), Expect = 1e-04
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 364 CPKTDCDNSTHFECQNGN-CIPSVLLCNGVNDCDDNSDE 401
+C S F+C +G+ CI S C+GV DC DNSDE
Sbjct: 2 AMVLNC-TSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 34.6 bits (80), Expect = 0.009
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 418 PSHFLCSNG-LCINETLTCNDINDCGDNSDEFSC 450
+ F C++G CIN C+ + DC DNSDE C
Sbjct: 9 SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 33.1 bits (76), Expect = 0.039
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 334 WKCLNGR-CLLENYYCDGENDCGDNSDE 360
+KC +G C+ Y CDG DC DNSDE
Sbjct: 12 FKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 26.9 bits (60), Expect = 6.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 2 CIPFNQTCDRVYNCHDKSDE 21
CI CD VY+C D SDE
Sbjct: 20 CINSRYRCDGVYDCRDNSDE 39
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 55.2 bits (133), Expect = 5e-10
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 494 VDTNECLDR----------PCSHYCRNTLGSYSCSCAPGYALLSDKHGCKA 534
VD +EC R C H C N +G Y CSC PGY L D+H C+A
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
Score = 34.7 bits (80), Expect = 0.010
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 452 VNECNVSHGG------QLCAHECIDLKIGYKCACRKGYQVHPEDKHLC 493
++EC C H C + GY C+CR GY++ D+H C
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE-DRHSC 50
Score = 27.0 bits (60), Expect = 6.2
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 800 QTPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCR 844
+ K + CQ LC G C+C + L+ D +C+
Sbjct: 8 ASRSKSGEEDPQPQCQHLCHNYV-GGYFCSCRPGYELQEDRHSCQ 51
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 57.0 bits (138), Expect = 7e-10
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 434 TCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLC 493
D + C E C C CID + C CR G++ +
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCG--------HGTCIDGIGSFSCDCRSGWEGRFCQR--E 51
Query: 494 VDTNECLDRP--CSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVP 539
V C C+HYC +G CSCAPGY L D C P
Sbjct: 52 VSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFP 99
Score = 28.1 bits (63), Expect = 6.9
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 805 DNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
N +NGGC CL + R+C+C + L D C
Sbjct: 55 LNCSLDNGGCTHYCLEEVGW-RRCSCAPGYKLGDDLLQC 92
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 54.5 bits (132), Expect = 8e-10
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 1094 CSESEFRCANGKCIRPHYVCNGENDCADHSDEINC 1128
CS EF C +G+CI + C+G DC D SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 52.6 bits (127), Expect = 3e-09
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 1055 CDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNC 1089
C F C + +CI SW CD DC D SDE+NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 51.4 bits (124), Expect = 7e-09
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
C F C + +CI +WRCDG PDC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 50.6 bits (122), Expect = 2e-08
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 160 CSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNC 199
CS +F C +G CI S WRCDG DC D SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDK-----SDEENC 36
Score = 47.6 bits (114), Expect = 2e-07
Identities = 17/35 (48%), Positives = 18/35 (51%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
CS F C +G CI CD DC D SDEE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 47.2 bits (113), Expect = 2e-07
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 68 CGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHC 102
C FHC G CIH + RCD PDC D SDE +C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 47.2 bits (113), Expect = 2e-07
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 31 CRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCS 66
C F C + +CI SS C+ DC D SDE +C+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 46.0 bits (110), Expect = 6e-07
Identities = 19/36 (52%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 1132 CSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
CS EF C CI S CDG DC D SDE NC
Sbjct: 2 CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDEENC 36
Score = 45.6 bits (109), Expect = 9e-07
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHH 283
C+ FEF C S G+CI +W CDG DC DKSDE +
Sbjct: 2 CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDEEN 35
Score = 45.6 bits (109), Expect = 1e-06
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1012 CGPDYIRCDTGRCIPKTWQCDGDVDCPNREDE 1043
C C +G CI +W+CDG DC ++ DE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 44.9 bits (107), Expect = 2e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 1212 CEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC 1246
C F C + +CIH CDG +C D SDE +C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 42.9 bits (102), Expect = 8e-06
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 293 CMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
C F CL+G C+ ++ CDG DC D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 42.9 bits (102), Expect = 9e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 888 CLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHC 922
C +F C + +C+H + CDG +C D SDE +C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 41.4 bits (98), Expect = 3e-05
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 372 STHFECQNGNCIPSVLLCNGVNDCDDNSDE 401
+ F C +G CI S C+G DC D SDE
Sbjct: 4 AFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 41.4 bits (98), Expect = 3e-05
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 847 CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHD 881
CSA +F C + +CI W+CD DC DKSDE +
Sbjct: 2 CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEEN 35
Score = 40.6 bits (96), Expect = 6e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 418 PSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
F C +G CI+ + C+ DC D SDE +C
Sbjct: 4 AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 40.2 bits (95), Expect = 9e-05
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDE 239
F C + + CI SW CDG DC D+SDE
Sbjct: 7 FHCLSGE-CIHSSWRCDGGPDCKDKSDE 33
Score = 37.2 bits (87), Expect = 8e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 335 KCLNGRCLLENYYCDGENDCGDNSDE 360
CL+G C+ ++ CDG DC D SDE
Sbjct: 8 HCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 36.8 bits (86), Expect = 0.001
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 126 CIEESYICDGQNDCFDMSDEQNC 148
CI S+ CDG DC D SDE+NC
Sbjct: 14 CIHSSWRCDGGPDCKDKSDEENC 36
Score = 36.4 bits (85), Expect = 0.001
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 973 CTANEFQCDV-KCISLALVCDKVFDCLDRSDEPADC 1007
C+A EF C +CI + CD DC D+SDE +C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE-ENC 36
Score = 34.9 bits (81), Expect = 0.006
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 927 CLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
C +F C CI RCDG PDC DE +C
Sbjct: 2 CSAFEFHCL-------SGECIHSSWRCDGGPDCKDKSDEENC 36
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 54.2 bits (131), Expect = 9e-10
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 1054 TCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCT 1090
+C T FKCN+ +CIP W CD D+DCGD SDE +
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 53.5 bits (129), Expect = 2e-09
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 1091 PRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCN 1129
+CS ++F+C +G+CI H+ C+G+NDC D+SDE + N
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 51.9 bits (125), Expect = 7e-09
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 1171 CKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICA 1208
C F C + +CI +W CDG+ DC D SDE + C
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 48.1 bits (115), Expect = 1e-07
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 159 NCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTES 203
+CS +F C +G CI W CDGDNDC D SDE + + +
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDY-----SDETHANCTN 43
Score = 47.7 bits (114), Expect = 2e-07
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCD 1287
CS FKC +G CI + CD NDCGD SDE +
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 46.1 bits (110), Expect = 8e-07
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 27 AMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCS 66
C FKC++ +CI TC+ NDCGD SDE +
Sbjct: 1 GSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 46.1 bits (110), Expect = 8e-07
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 1009 SQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPP 1045
S +C +C++GRCIP+ W CDGD DC + DE
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38
Score = 45.7 bits (109), Expect = 1e-06
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 65 CSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTN 106
+C + F C+ G CI + CD D DC D SDE H TN
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 45.7 bits (109), Expect = 1e-06
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 1211 ACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHC 1246
+C +FKC + +CI + CDG ++CGD SDE+H
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 45.4 bits (108), Expect = 1e-06
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 292 TCMEGYFKCLNGRCLLENYYCDGENDCGDNSDE 324
+C FKC +GRC+ E++ CDG+NDCGD SDE
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 44.6 bits (106), Expect = 2e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 245 AHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQ 285
C+ +F+CNS G+CIP W CDG DC D SDE H+
Sbjct: 1 GSHSCSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 44.6 bits (106), Expect = 3e-06
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1129 NISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCK 1172
+ SCS +FKC+ CI CDGD DC D SDE + +
Sbjct: 2 SHSCSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 43.4 bits (103), Expect = 6e-06
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 887 HCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHC 922
C QF+CN+ +C+ + CDG N+CGD SDE H
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 43.1 bits (102), Expect = 8e-06
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 371 NSTHFECQNGNCIPSVLLCNGVNDCDDNSDED 402
+ST F+C +G CIP C+G NDC D SDE
Sbjct: 6 SSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37
Score = 43.1 bits (102), Expect = 9e-06
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 845 HNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHD 881
H+CS+ QF C + +CIP W CD +DCGD SDE
Sbjct: 3 HSCSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETH 38
Score = 41.5 bits (98), Expect = 3e-05
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 418 PSHFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
+ F C++G CI E TC+ NDCGD SDE
Sbjct: 7 STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 41.1 bits (97), Expect = 5e-05
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 203 STCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAH 246
+C + F+C++ + CI + W CDG DC D SDE C +
Sbjct: 3 HSCSSTQ--FKCNSGR-CIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 39.2 bits (92), Expect = 2e-04
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 334 WKCLNGRCLLENYYCDGENDCGDNSDEPP 362
+KC +GRC+ E++ CDG+NDCGD SDE
Sbjct: 10 FKCNSGRCIPEHWTCDGDNDCGDYSDETH 38
Score = 36.9 bits (86), Expect = 0.002
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 972 NCTANEFQC-DVKCISLALVCDKVFDCLDRSDE-PADCTSQ 1010
+C++ +F+C +CI CD DC D SDE A+CT+Q
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 35.0 bits (81), Expect = 0.007
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 126 CIEESYICDGQNDCFDMSDEQNCD 149
CI E + CDG NDC D SDE + +
Sbjct: 17 CIPEHWTCDGDNDCGDYSDETHAN 40
Score = 32.7 bits (75), Expect = 0.047
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
+C +TQFKC CI CDG DC DE
Sbjct: 4 SCSSTQFKCNSG-------RCIPEHWTCDGDNDCGDYSDETHA 39
Score = 26.9 bits (60), Expect = 4.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMR 29
CIP + TCD +C D SDE C +
Sbjct: 17 CIPEHWTCDGDNDCGDYSDETHANCTNQ 44
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 60.4 bits (147), Expect = 1e-09
Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 10/172 (5%)
Query: 567 TNAVGLDFDWVDNCLYWSDVTMHGSSIRR---SCNNSQPELLFPATSPDGLTVDWVGRNL 623
+ G+ D ++++ + I S + E+ P L V +G ++
Sbjct: 20 SGPYGITSS-EDGKVWFTQ--HKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLG-DI 75
Query: 624 YWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMD 683
++ + G + I G F + + + P GI G +++T IGK D
Sbjct: 76 WFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLN-GDRIGKLTAD 133
Query: 684 GSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVS 735
G+ + + S+P +T+ N L++ + + I G+ + +
Sbjct: 134 GTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLP 184
Score = 59.2 bits (144), Expect = 3e-09
Identities = 30/208 (14%), Positives = 73/208 (35%), Gaps = 29/208 (13%)
Query: 541 NLLFTNKY--YIREVTQAGVMTIRIHNQTNA--VGLDFDWVDNCLYWSDVTMHGSSIRR- 595
++ FT I ++++ G T Q ++ G+ ++ ++++ ++G I +
Sbjct: 74 DIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEG-LNGDIWFTQ--LNGDRIGKL 130
Query: 596 --SCNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQE 653
+ +L + P +T+ L++ + ++I G+ + +
Sbjct: 131 TADGTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITNTGKLEEYPLPTNAAA 189
Query: 654 PRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWG 713
P GI G +++ + N IG+ G + I + P+A+T
Sbjct: 190 PVGITSGND-GALWFVEIMGNK-IGRITTTGEISEYDIPTPNARPHAITA---------- 237
Query: 714 DAHEDYIAVSDLNGENIKIIVSRRMDPT 741
I ++ I R+
Sbjct: 238 GK-NSEIWFTEWGANQI-----GRITND 259
Score = 58.9 bits (143), Expect = 3e-09
Identities = 28/166 (16%), Positives = 65/166 (39%), Gaps = 11/166 (6%)
Query: 607 PATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYM 666
P + P G+T G +++ + I GR ++ + + + ++ G +
Sbjct: 18 PDSGPYGITSSEDG-KVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSL-GDI 75
Query: 667 YWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLN 726
++T+ G N IGK G + + + S P +T + +++ + D I +
Sbjct: 76 WFTENGANK-IGKLSKKGGFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD 133
Query: 727 GENIKIIVSRRMDPTINLHHVFALAVFED-HLFWTDWEMKSIERCD 771
G + + + + + + D L++T+ + SI R
Sbjct: 134 GTIYEYDLPNKGS------YPAFITLGSDNALWFTENQNNSIGRIT 173
Score = 49.6 bits (119), Expect = 3e-06
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 541 NLLFTNKY--YIREVTQAG-VMTIRIHNQTNA-VGLDFDWVDNCLYWSDVTMHGSSIRR- 595
L FT I +T G + + A VG+ L++ ++ G+ I R
Sbjct: 158 ALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM--GNKIGRI 214
Query: 596 --SCNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQE 653
+ S+ ++ P P +T +++ + G + I D ++ + E
Sbjct: 215 TTTGEISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITNDNTIQEYQLQTENAE 273
Query: 654 PRGIALNPAYGYMYWTDWGQNAHIGKAKMD 683
P GI G +++ IGK ++
Sbjct: 274 PHGITFGKD-GSVWFAL---KCKIGKLNLN 299
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 58.8 bits (143), Expect = 3e-09
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWT 669
P+GL VD G +Y D+G + + + + VL GL +P G+A++ + G +Y T
Sbjct: 109 YPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYVT 166
Query: 670 DWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGEN 729
D N + K + + +N V+ +++ P + + + V++ N
Sbjct: 167 DTDNNR-VVKLEAESNNQVVLPFTDITAPWGIAVD-----------EAGTVYVTEHNTNQ 214
Query: 730 IKII 733
+ +
Sbjct: 215 VVKL 218
Score = 48.0 bits (115), Expect = 8e-06
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 610 SPDGLTVDWVGRNLYWCDKGL-DTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYW 668
SP G+ VD G N+Y +G+ + VL GL +P+G+A++ A G +Y
Sbjct: 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYV 82
Query: 669 TDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGE 728
TD+ N + A +N V+ L++P L + ++ D + + +
Sbjct: 83 TDFN-NRVVTLAA-GSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSK 139
Query: 729 NIKIIVSRRMD 739
++ ++
Sbjct: 140 TQTVLPFTGLN 150
Score = 45.3 bits (108), Expect = 7e-05
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 609 TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYW 668
T+P G+ VD G +Y + + + VL GL P +A++ +Y
Sbjct: 192 TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYV 249
Query: 669 TDWGQN 674
D G +
Sbjct: 250 ADRGND 255
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 51.5 bits (124), Expect = 8e-09
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCT 1168
C +EF+C CI CDGDTDC D SDE +C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 50.7 bits (122), Expect = 2e-08
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 1054 TCDPTYFKCN-NYKCIPGSWHCDYDDDCGDGSDEKNCT 1090
C F+C + CIP W CD D DC D SDEK+C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 50.3 bits (121), Expect = 2e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHH 283
C+ EF+C G CIP+ W CDG TDC+D SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38
Score = 49.6 bits (119), Expect = 4e-08
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 1091 PRNCSESEFRC-ANGKCIRPHYVCNGENDCADHSDEINCN 1129
P C EF+C +G CI + C+G+ DC D SDE +C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 47.6 bits (114), Expect = 2e-07
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 845 HNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCP 884
C +F C CIP W+CD DC D SDE C
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS-CE 40
Score = 46.9 bits (112), Expect = 4e-07
Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 160 CSGDKFLCR-NGNCILSRWRCDGDNDCNDGNDGLSSDEMNCD 200
C D+F CR +G CI RWRCDGD DC D SDE +C+
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDS-----SDEKSCE 40
Score = 46.9 bits (112), Expect = 4e-07
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 1171 CKPNMFTC-ANHQCISLNWRCDGEPDCSDNSDE 1202
C + F C + CI L WRCDG+ DC D+SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 45.3 bits (108), Expect = 1e-06
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 66 STCGNDTFHCDM-GMCIHKALRCDVDPDCPDASDEMHCP 103
C D F C + G+CI RCD D DC D+SDE C
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 44.6 bits (106), Expect = 3e-06
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 203 STCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE 239
C + FQC + CI W CDG DC D SDE
Sbjct: 2 GGCHTDE--FQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 43.8 bits (104), Expect = 5e-06
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 1011 TCGPDYIRC-DTGRCIPKTWQCDGDVDCPNREDE 1043
C D +C G CIP W+CDGD DC + DE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 42.6 bits (101), Expect = 1e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 1211 ACEPNRFKCK-NNKCIHRYAMCDGIDNCGDNSDESHCPSI 1249
C + F+C+ + CI CDG +C D+SDE C +
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 1252 CSEANFKC-ANGNCIKKELECDQYNDCGDNSDEEGCDS 1288
C F+C +G CI CD DC D+SDE+ C+
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41
Score = 41.1 bits (97), Expect = 4e-05
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 31 CRPGYFKC-DNNKCILSSHTCNNINDCGDGSDEADC 65
C F+C + CI C+ DC D SDE C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 40.3 bits (95), Expect = 9e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 119 HCNFTSACIEESYICDGQNDCFDMSDEQNCDQI 151
C CI + CDG DC D SDE++C+ +
Sbjct: 10 QCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 39.9 bits (94), Expect = 1e-04
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
C +F+C+ CI L RCDG DC DE C
Sbjct: 3 GCHTDEFQCR------LDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 39.2 bits (92), Expect = 2e-04
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 970 PKNCTANEFQC--DVKCISLALVCDKVFDCLDRSDEPADCTS 1009
P C +EFQC D CI L CD DC+D SDE C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE-KSCEG 41
Score = 38.4 bits (90), Expect = 3e-04
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 292 TCMEGYFKC-LNGRCLLENYYCDGENDCGDNSDE 324
C F+C L+G C+ + CDG+ DC D+SDE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 38.0 bits (89), Expect = 5e-04
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 361 PPSCPKTDCDNSTHFECQ-NGNCIPSVLLCNGVNDCDDNSDED 402
P C + F+C+ +G CIP C+G DC D+SDE
Sbjct: 1 PGGCH------TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37
Score = 36.1 bits (84), Expect = 0.002
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 888 CLPGQFQCN-NTKCLHPNTICDGVNNCGDMSDELHC 922
C +FQC + C+ CDG +C D SDE C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 35.3 bits (82), Expect = 0.005
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 417 HPSHFLC-SNGLCINETLTCNDINDCGDNSDEFSC 450
H F C +GLCI C+ DC D+SDE SC
Sbjct: 5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 33.0 bits (76), Expect = 0.036
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 338 NGRCLLENYYCDGENDCGDNSDE 360
+G C+ + CDG+ DC D+SDE
Sbjct: 14 DGLCIPLRWRCDGDTDCMDSSDE 36
Score = 26.5 bits (59), Expect = 6.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1 MCIPFNQTCDRVYNCHDKSDE 21
+CIP CD +C D SDE
Sbjct: 16 LCIPLRWRCDGDTDCMDSSDE 36
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 51.6 bits (124), Expect = 9e-09
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 244 CAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVET 292
C F C T C+P W+CDG DC D +DE + CL T
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
Score = 50.1 bits (120), Expect = 4e-08
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 1054 TCDPTYFKCNN-YKCIPGSWHCDYDDDCGDGSDEKNC 1089
TC P+ F C + C+P W CD D DC DG+DE
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 47.8 bits (114), Expect = 2e-07
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 1089 CTPRNCSESEFRCANG-KCIRPHYVCNGENDCADHSDEINC 1128
+ C S F C C+ ++C+G+ DCAD +DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 47.0 bits (112), Expect = 4e-07
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1007 CTSQTCGPDYIRC-DTGRCIPKTWQCDGDVDCPNREDEPPSC 1047
+TCGP C T C+P+ W CDGD DC + DE +
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 46.2 bits (110), Expect = 7e-07
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPN 1174
+C + F C C+ +CDGD DC DG+DE+ C N
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG-CLYN 48
Score = 46.2 bits (110), Expect = 8e-07
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 844 RHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQC 883
C F C T C+P W CD DC D +DE
Sbjct: 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 45.4 bits (108), Expect = 2e-06
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 1171 CKPNMFTCAN-HQCISLNWRCDGEPDCSDNSDE 1202
C P+ F+C H C+ W CDG+ DC+D +DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 43.9 bits (104), Expect = 5e-06
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 26 CAMRDCRPGYFKCDN-NKCILSSHTCNNINDCGDGSDEADCSTC 68
+ C P F C + C+ C+ DC DG+DE+ + C
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGC 45
Score = 42.8 bits (101), Expect = 2e-05
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 155 SPKMNCSGDKFLCRNGN-CILSRWRCDGDNDCNDGNDGLSSDEMNC 199
S C F C + C+ RW CDGD DC DG +DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADG-----ADESIA 42
Score = 42.4 bits (100), Expect = 2e-05
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 201 TESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSEC 249
TC ++ F C C+ + W+CDG DC D +DE+
Sbjct: 3 EGKTCGPSS--FSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNS 49
Score = 40.8 bits (96), Expect = 6e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1207 CAGLACEPNRFKCKN-NKCIHRYAMCDGIDNCGDNSDESHCPS 1248
G C P+ F C + C+ +CDG +C D +DES
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 40.8 bits (96), Expect = 7e-05
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 66 STCGNDTFHCDMG-MCIHKALRCDVDPDCPDASDEMHCP--MTNCT 108
TCG +F C +C+ + CD D DC D +DE + N T
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
Score = 39.7 bits (93), Expect = 2e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 883 CPQFHCLPGQFQCNNT-KCLHPNTICDGVNNCGDMSDELHC 922
C P F C T C+ +CDG +C D +DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 38.9 bits (91), Expect = 3e-04
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 292 TCMEGYFKCLNG-RCLLENYYCDGENDCGDNSDE 324
TC F C C+ E + CDG+ DC D +DE
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 38.5 bits (90), Expect = 4e-04
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 922 CVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
TC + F C C+ CDG DC G DE
Sbjct: 2 SEGKTCGPSSFSCP------GTHVCVPERWLCDGDKDCADGADESIA 42
Score = 38.1 bits (89), Expect = 5e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 1252 CSEANFKCANGN-CIKKELECDQYNDCGDNSDEEGC 1286
C ++F C + C+ + CD DC D +DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 38.1 bits (89), Expect = 7e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 119 HCNFTSACIEESYICDGQNDCFDMSDEQNC 148
C T C+ E ++CDG DC D +DE
Sbjct: 13 SCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 37.4 bits (87), Expect = 0.001
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 968 CMPKNCTANEFQCD--VKCISLALVCDKVFDCLDRSDEPADC 1007
K C + F C C+ +CD DC D +DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 36.6 bits (85), Expect = 0.002
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 364 CPKTDCDNSTHFECQNGN-CIPSVLLCNGVNDCDDNSDED 402
C + F C + C+P LC+G DC D +DE
Sbjct: 2 SEGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 32.7 bits (75), Expect = 0.042
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 334 WKCLNG-RCLLENYYCDGENDCGDNSDEPPSC 364
+ C C+ E + CDG+ DC D +DE +
Sbjct: 12 FSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 32.0 bits (73), Expect = 0.082
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 417 HPSHFLCSNG-LCINETLTCNDINDCGDNSDEFSC 450
PS F C +C+ E C+ DC D +DE
Sbjct: 8 GPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 50.9 bits (122), Expect = 2e-08
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1054 TCDPTYFKCNN-YKCIPGSWHCDYDDDCGDGSDEKNC 1089
C YF C N KC+P HC+ DDCG+ +DE NC
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 47.8 bits (114), Expect = 2e-07
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1129 NISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
++ CS F C + C+ L C+G DC + +DE NC
Sbjct: 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 45.5 bits (108), Expect = 1e-06
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 244 CAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDE 281
+C+L F C + +C+P C+GV DC +++DE
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 44.7 bits (106), Expect = 3e-06
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 846 NCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHD 881
CS G F C KC+P C+ DDCG+++DE +
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN 41
Score = 43.5 bits (103), Expect = 6e-06
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 31 CRPGYFKCDN-NKCILSSHTCNNINDCGDGSDEADC 65
C GYF C N KC+ CN ++DCG+ +DE +C
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 43.2 bits (102), Expect = 7e-06
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 1089 CTPRNCSESEFRCANG-KCIRPHYVCNGENDCADHSDEINC 1128
CS F C N KC+ CNG +DC + +DE NC
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 41.2 bits (97), Expect = 3e-05
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 1168 TTKCKPNMFTCAN-HQCISLNWRCDGEPDCSDNSDE 1202
KC F C N +C+ C+G DC + +DE
Sbjct: 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 40.8 bits (96), Expect = 5e-05
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 155 SPKMNCSGDKFLCRNGN-CILSRWRCDGDNDCNDGNDGLSSDEMNC 199
S + CS F C N C+ C+G +DC + +DE NC
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQ-----ADEDNC 42
Score = 40.5 bits (95), Expect = 7e-05
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 1007 CTSQTCGPDYIRCDTG-RCIPKTWQCDGDVDCPNREDE 1043
C Y C +C+P+ C+G DC N+ DE
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 40.1 bits (94), Expect = 9e-05
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 292 TCMEGYFKCLNG-RCLLENYYCDGENDCGDNSDE 324
C GYF C N +CL + +C+G +DCG+ +DE
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 1207 CAGLACEPNRFKCKN-NKCIHRYAMCDGIDNCGDNSDESHC 1246
+ C F C N KC+ + C+G+D+CG+ +DE +C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 39.7 bits (93), Expect = 2e-04
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 1252 CSEANFKCANGN-CIKKELECDQYNDCGDNSDEEGC 1286
CS F C N C+ + L C+ +DCG+ +DE+ C
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 39.3 bits (92), Expect = 2e-04
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 212 FQCDNNKTCISKSWVCDGTYDCTDRSDE 239
F C N C+ + C+G DC +++DE
Sbjct: 12 FPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 883 CPQFHCLPGQFQCNN-TKCLHPNTICDGVNNCGDMSDELHC 922
C G F C N TKCL C+GV++CG+ +DE +C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 37.8 bits (88), Expect = 7e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 119 HCNFTSACIEESYICDGQNDCFDMSDEQNC 148
C + C+ + C+G +DC + +DE NC
Sbjct: 13 PCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 37.8 bits (88), Expect = 7e-04
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 922 CVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
D C F C G C+ L C+G DC DE +C
Sbjct: 2 SQDVKCSLGYFPC------GNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 37.4 bits (87), Expect = 0.001
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 360 EPPSCPKTDCDNSTHFECQNGN-CIPSVLLCNGVNDCDDNSDED 402
+ C +F C N C+P +L CNGV+DC + +DED
Sbjct: 3 QDVKCS------LGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40
Score = 36.6 bits (85), Expect = 0.002
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 67 TCGNDTFHC-DMGMCIHKALRCDVDPDCPDASDEMHC 102
C F C ++ C+ + L C+ DC + +DE +C
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 34.7 bits (80), Expect = 0.008
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 418 PSHFLCSNG-LCINETLTCNDINDCGDNSDEFSC 450
+F C N C+ + L CN ++DCG+ +DE +C
Sbjct: 9 LGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 33.1 bits (76), Expect = 0.034
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 968 CMPKNCTANEFQC--DVKCISLALVCDKVFDCLDRSDE 1003
C+ F C KC+ L C+ V DC +++DE
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 32.0 bits (73), Expect = 0.066
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 335 KCLNG-RCLLENYYCDGENDCGDNSDE 360
C N +CL + +C+G +DCG+ +DE
Sbjct: 13 PCGNITKCLPQLLHCNGVDDCGNQADE 39
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 53.1 bits (128), Expect = 3e-08
Identities = 22/109 (20%), Positives = 28/109 (25%), Gaps = 12/109 (11%)
Query: 434 TCNDINDC----GDNSDEFSCFVNECNVSHG---GQLCAHECIDLKIGYKCACRKGYQVH 486
C + +N + A C KGY
Sbjct: 40 ICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYS-- 97
Query: 487 PEDKHLCVDTNECLDRPCSH---YCRNTLGSYSCSCAPGYALLSDKHGC 532
C D +EC P C NT GS+ C C G L + C
Sbjct: 98 RIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 41.2 bits (97), Expect = 4e-04
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 495 DTNECLDRPC-SHYCRNTLGSYSCSCAPGYALLSDKHGC 532
D +EC PC + C+N+ GS+ C C+ L K C
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTIC 41
Score = 38.1 bits (89), Expect = 0.005
Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 10/133 (7%)
Query: 806 NPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPFWW 865
+ CE++ G+C P C C L+ C + +C
Sbjct: 5 DECESSPCINGVCKNSPGSFI-CECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININ 63
Query: 866 KCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKC--LHPNTICDGVNNCGDMSDELHCV 923
+ C P C Q K T C+ ++ C C
Sbjct: 64 GATLKSQCCSSLGAAWGSP---CTLCQVDPICGKGYSRIKGTQCEDIDECEVFPG--VCK 118
Query: 924 DYTCLNTQ--FKC 934
+ C+NT+ FKC
Sbjct: 119 NGLCVNTRGSFKC 131
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system;
HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 55.8 bits (133), Expect = 8e-08
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 1079 DCGDG--SDEKNCTPRNCSESEFRCANGKCIRPHY--VCNGE-NDCADHSDEINC-NISC 1132
C S+ +C P C + ++R + +C+G+ D A S C +
Sbjct: 8 TCQLSNWSEWTDCFP--CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQ 65
Query: 1133 SKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKP-----NMFTCANHQCISLN 1187
+F+C C+ LVC+GD DC DGSDE +C Q +L
Sbjct: 66 CGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALG 125
Query: 1188 WRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHR 1227
+ + D D ++
Sbjct: 126 YNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCE 165
Score = 53.1 bits (126), Expect = 5e-07
Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 9/150 (6%)
Query: 1054 TCDPTYFKCNNYKCIP--GSWHCDYDD-DCGDGSDEKNCTPRNCSESEFRCA-NGKCIRP 1109
C ++ + G C D D S C + +F+C G+C++
Sbjct: 22 PCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKR 81
Query: 1110 HYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTT 1169
H VCNG+ DC D SDE +C + CS S G + D +
Sbjct: 82 HLVCNGDQDCLDGSDEDDCE-DVRAIDEDCSQYEPIPGSQKAALGY-NILTQEDAQS--- 136
Query: 1170 KCKPNMFTCANHQCISLNWRCDGEPDCSDN 1199
+ + + WR +
Sbjct: 137 VYDASYYGGQCETVYNGEWRELRYDSTCER 166
Score = 50.8 bits (120), Expect = 3e-06
Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 14/141 (9%)
Query: 55 DCGDG--SDEADCSTCGNDTFHCDMGMCI--HKALRCD-VDPDCPDASDEMHCPMTNCTE 109
C S+ DC C + + + C D S C
Sbjct: 8 TCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQC- 66
Query: 110 KYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRN 169
C T C++ +C+G DC D SDE +C+ ++ + +
Sbjct: 67 -----GQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCS---QYEPIPG 118
Query: 170 GNCILSRWRCDGDNDCNDGND 190
+ D D
Sbjct: 119 SQKAALGYNILTQEDAQSVYD 139
Score = 49.6 bits (117), Expect = 7e-06
Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 3/134 (2%)
Query: 225 WVCDGTY-DCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHH 283
+C G D S T C +F+C TG+C+ VC+G DC+D SDE
Sbjct: 42 TICSGDIWDQASCSSS--TTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD 99
Query: 284 SQDCLNVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRCLL 343
+D ++ Y + Y + D D R L
Sbjct: 100 CEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELR 159
Query: 344 ENYYCDGENDCGDN 357
+ C+ D
Sbjct: 160 YDSTCERLYYGDDE 173
Score = 47.7 bits (112), Expect = 2e-05
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 4/128 (3%)
Query: 993 KVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNL 1052
++D S CG D+ +TGRC+ + C+GD DC + DE +
Sbjct: 47 DIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAI 106
Query: 1053 YTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEK----NCTPRNCSESEFRCANGKCIR 1108
Y + ++ +D D C E + C R
Sbjct: 107 DEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCER 166
Query: 1109 PHYVCNGE 1116
+Y + +
Sbjct: 167 LYYGDDEK 174
Score = 44.2 bits (103), Expect = 3e-04
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 1195 DCSDNSDEIESICAGLACEPNRFKCKNNKCIHRY--AMCDGID-NCGDNSDESHCPSIKL 1251
C ++ + C C+ +++ ++ +++ +C G + S + C
Sbjct: 8 TCQLSNWSEWTDCFP--CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQ 65
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQ 1298
C + G C+K+ L C+ DC D SDE+ C+ CSQ
Sbjct: 66 CGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ 112
Score = 40.0 bits (92), Expect = 0.006
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 12/138 (8%)
Query: 1156 TDCWDG--SDEANCTTKCKPNMFTCANHQCISLN--WRCDGEP-DCSDNSDEIESICAGL 1210
C S+ +C C+ + + + C G+ D + S + C
Sbjct: 7 VTCQLSNWSEWTDCFP-CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSS--TTCVRQ 63
Query: 1211 ACEPNRFKCKNN-KCIHRYAMCDGIDNCGDNSDESHCPSIKLCSEANFKC---ANGNCIK 1266
A F+CK +C+ R+ +C+G +C D SDE C ++ E +
Sbjct: 64 AQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAA 123
Query: 1267 KELECDQYNDCGDNSDEE 1284
D D
Sbjct: 124 LGYNILTQEDAQSVYDAS 141
Score = 39.2 bits (90), Expect = 0.011
Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 16/153 (10%)
Query: 1123 SDEINCNISCSKNEFK---CSHPAHCISSDLVCDGD-TDCWDGSDEANCTTKCKP-NMFT 1177
S+ +C C +++ P + C GD D S C + + F
Sbjct: 15 SEWTDCF-PCQDKKYRHRSLLQPNKFGGTI--CSGDIWDQASCSSSTTCVRQAQCGQDFQ 71
Query: 1178 CANH-QCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYA----MCD 1232
C +C+ + C+G+ DC D SDE + C + + A
Sbjct: 72 CKETGRCLKRHLVCNGDQDCLDGSDEDD--CEDVRAIDEDCSQYEPIPGSQKAALGYNIL 129
Query: 1233 GIDNCGDNSDES-HCPSIKLCSEANFKCANGNC 1264
++ D S + + ++ +
Sbjct: 130 TQEDAQSVYDASYYGGQCETVYNGEWRELRYDS 162
Score = 36.5 bits (83), Expect = 0.063
Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 14/158 (8%)
Query: 888 CLPGQFQCNNTKCLHPN--TICDG-VNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGD 944
C +++ + + TIC G + + S CV F+CK
Sbjct: 23 CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKE------TG 76
Query: 945 HCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQCDVKCISLALVCDKVFDCLDRSDEP 1004
C+ C+G DC G DE DC + + I + ++ L + D
Sbjct: 77 RCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCS-QYEPIPGSQKAALGYNILTQEDAQ 135
Query: 1005 ADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNRED 1042
+ + G G + + D C
Sbjct: 136 SVYDASYYGGQCETVYNG----EWRELRYDSTCERLYY 169
Score = 36.1 bits (82), Expect = 0.096
Identities = 21/139 (15%), Positives = 35/139 (25%), Gaps = 5/139 (3%)
Query: 26 CAMRDCRPGYFKC-DNNKCILSSHTCNNINDCGDGSDEADCSTCGNDTFHCDMGMCIHKA 84
C + F+C + +C+ CN DC DGSDE DC C I +
Sbjct: 60 CVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGS 119
Query: 85 LRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSD 144
+ + + + Y N + C+ D
Sbjct: 120 QKAALGYNI----LTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKY 175
Query: 145 EQNCDQIKDVSPKMNCSGD 163
+ +
Sbjct: 176 FRKPYNFLKYHFEALADTG 194
Score = 35.3 bits (80), Expect = 0.14
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 10/116 (8%)
Query: 847 CSAGQFLCEKTMKCIPFW--WKCDTQD-DCGDKSDEHDQCPQFHCLPGQFQCNNT-KCLH 902
C ++ +++ + C D S C + FQC T +CL
Sbjct: 23 CQDKKYRH-RSLLQPNKFGGTICSGDIWDQASCSSSTT-CVRQAQCGQDFQCKETGRCLK 80
Query: 903 PNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQ----GTGDHCISLLNRCD 954
+ +C+G +C D SDE C D ++ G + ++ +
Sbjct: 81 RHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQS 136
Score = 33.0 bits (74), Expect = 0.69
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 4/121 (3%)
Query: 837 ESDGKTCRHN-CSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQC 895
S TC F C++T +C+ C+ DC D SDE D C + C
Sbjct: 54 CSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD-CEDVRAID--EDC 110
Query: 896 NNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDG 955
+ + + + N D D + Q + + + + G
Sbjct: 111 SQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYG 170
Query: 956 H 956
Sbjct: 171 D 171
Score = 30.3 bits (67), Expect = 5.6
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 348 CDGE-NDCGDNSDEPPSCPKTDCDNSTHFEC-QNGNCIPSVLLCNGVNDCDDNSDEDMNH 405
C G+ D S + C F+C + G C+ L+CNG DC D SDE +
Sbjct: 44 CSGDIWDQASCSSSTTCVRQAQC--GQDFQCKETGRCLKRHLVCNGDQDCLDGSDE-DDC 100
Query: 406 AECRSLKDLCKHPSHF----LCSNGLCINETLTCNDIND 440
+ R++ + C + G I + D
Sbjct: 101 EDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYD 139
Score = 30.0 bits (66), Expect = 7.1
Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 292 TCMEGYFKCLNGRCLLENY--YCDGE-NDCGDNSDE---PIVSMWKLVWKC-LNGRCLLE 344
C + ++ + + C G+ D S + ++C GRCL
Sbjct: 22 PCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKR 81
Query: 345 NYYCDGENDCGDNSDEPP--SCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDED 402
+ C+G+ DC D SDE D D S + D D
Sbjct: 82 HLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDAS 141
Query: 403 MNHAECR 409
+C
Sbjct: 142 YYGGQCE 148
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Length = 47
Score = 49.0 bits (117), Expect = 9e-08
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 1054 TCDPTYFKC-----NNYKCIPGSWHCDYDDDCGDGSDEKNC 1089
C P F+C + +C P W CD DC DG DE C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 45.9 bits (109), Expect = 9e-07
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 1129 NISCSKNEFKCSHPA----HCISSDLVCDGDTDCWDGSDEANCTT 1169
+ C +F+CS P C D +CDG DC DG DE C T
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 44.4 bits (105), Expect = 4e-06
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 1168 TTKCKPNMFTCA-----NHQCISLNWRCDGEPDCSDNSDE 1202
+++C P F C+ + +C +W CDG PDC D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 44.4 bits (105), Expect = 4e-06
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 1091 PRNCSESEFRCA-----NGKCIRPHYVCNGENDCADHSDEINCNIS 1131
C +FRC+ +G+C ++C+G DC D DE C S
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
Score = 43.6 bits (103), Expect = 6e-06
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 65 CSTCGNDTFHCD-----MGMCIHKALRCDVDPDCPDASDEMHCP 103
S C F C G C + CD PDC D DE C
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45
Score = 43.2 bits (102), Expect = 9e-06
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 1009 SQTCGPDYIRCD-----TGRCIPKTWQCDGDVDCPNREDE 1043
S C P RC G C P+ W CDG DC + DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 41.7 bits (98), Expect = 3e-05
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 245 AHSECNLFEFRCNS----TGQCIPITWVCDGVTDCIDKSDE 281
S C +FRC+ G+C P W+CDG DC D DE
Sbjct: 1 GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 41.7 bits (98), Expect = 3e-05
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 160 CSGDKFLCR-----NGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDT 201
C +F C +G C W CDG DC+DG DE C T
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDG-----RDEWGCGT 46
Score = 40.9 bits (96), Expect = 6e-05
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
C QF+C P G C CDGHPDC G DE C
Sbjct: 4 RCPPGQFRCSEPP--GAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 39.8 bits (93), Expect = 1e-04
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 847 CSAGQFLCEKTM----KCIPFWWKCDTQDDCGDKSDEHDQCPQ 885
C GQF C + +C P W CD DC D DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG-CGT 46
Score = 39.8 bits (93), Expect = 1e-04
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 31 CRPGYFKCD-----NNKCILSSHTCNNINDCGDGSDEADCST 67
C PG F+C + +C C+ DC DG DE C T
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 39.0 bits (91), Expect = 3e-04
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 1208 AGLACEPNRFKCK-----NNKCIHRYAMCDGIDNCGDNSDESHCPS 1248
C P +F+C + +C + +CDG +C D DE C +
Sbjct: 1 GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 38.2 bits (89), Expect = 6e-04
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 1252 CSEANFKCA-----NGNCIKKELECDQYNDCGDNSDEEGCDS 1288
C F+C+ +G C ++ CD + DC D DE GC +
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 36.3 bits (84), Expect = 0.002
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 292 TCMEGYFKC-----LNGRCLLENYYCDGENDCGDNSDE 324
C G F+C +G C +++ CDG DC D DE
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 36.3 bits (84), Expect = 0.002
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 203 STCKANNNVFQC----DNNKTCISKSWVCDGTYDCTDRSDE 239
S C F+C + C + W+CDG DC D DE
Sbjct: 3 SRCPPGQ--FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 35.9 bits (83), Expect = 0.004
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 888 CLPGQFQC-----NNTKCLHPNTICDGVNNCGDMSDELHC 922
C PGQF+C + +C + +CDG +C D DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 34.8 bits (80), Expect = 0.009
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 123 TSACIEESYICDGQNDCFDMSDEQNCDQ 150
C + ++CDG DC D DE C
Sbjct: 19 HGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 34.4 bits (79), Expect = 0.010
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 361 PPSCPKTDCDNSTHFEC-----QNGNCIPSVLLCNGVNDCDDNSDE 401
CP F C +G C P LC+G DCDD DE
Sbjct: 2 SSRCP------PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 33.2 bits (76), Expect = 0.033
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 970 PKNCTANEFQCDV------KCISLALVCDKVFDCLDRSDE 1003
C +F+C +C +CD DC D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 32.5 bits (74), Expect = 0.052
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 418 PSHFLCS-----NGLCINETLTCNDINDCGDNSDEFSC 450
P F CS +G C + C+ DC D DE+ C
Sbjct: 7 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 32.1 bits (73), Expect = 0.081
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 338 NGRCLLENYYCDGENDCGDNSDEPPSCPKT 367
+G C +++ CDG DC D DE C +
Sbjct: 19 HGECYPQDWLCDGHPDCDDGRDE-WGCGTS 47
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 51.7 bits (124), Expect = 9e-08
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 423 CSNGLCINETLTCNDINDCGDNSDEFSCFVNEC-NVSHGGQLCAHECIDLKIGYKCACRK 481
C+ G + + C D +NEC +S +C + + Y C C
Sbjct: 23 CNPGFSSFSEIITTPMETCDD--------INECATLSKVSCGKFSDCWNTEGSYDCVCSP 74
Query: 482 GYQV-------HPEDKHLCVDTNECLDRP----CSHYCRNTLGSYSCSCAPGYALLSDKH 530
GY+ E ++ C D +EC S C NT+GSYSC C PG+
Sbjct: 75 GYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIP 134
Query: 531 GC 532
Sbjct: 135 NN 136
Score = 45.6 bits (108), Expect = 1e-05
Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 12/82 (14%)
Query: 464 CAHECIDLKI---GYKCACRKGYQ----VHPEDKHLCVDTNECLDR-----PCSHYCRNT 511
CA C C C G+ + C D NEC C NT
Sbjct: 5 CARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNT 64
Query: 512 LGSYSCSCAPGYALLSDKHGCK 533
GSY C C+PGY +S K
Sbjct: 65 EGSYDCVCSPGYEPVSGAKTFK 86
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 48.1 bits (115), Expect = 1e-07
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 1055 CDPTYFKC--NNYKCIPGSWHCDYDDDCGDGSDEKNC 1089
C C ++ +CIP SW CD ++DC G DE+NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 42.7 bits (101), Expect = 1e-05
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1171 CKPNMFTCAN--HQCISLNWRCDGEPDCSDNSDE 1202
C+ + +C QCI ++WRCDGE DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 42.3 bits (100), Expect = 1e-05
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1094 CSESEFRCANG--KCIRPHYVCNGENDCADHSDEINCN 1129
C E C +CI + C+GENDC DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 41.2 bits (97), Expect = 3e-05
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 1132 CSKNEFKC-SHPAHCISSDLVCDGDTDCWDGSDEANC 1167
C +E C +H CI CDG+ DC G DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 41.2 bits (97), Expect = 4e-05
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1012 CGPDYIRC--DTGRCIPKTWQCDGDVDCPNREDE 1043
C I C + +CIP +W+CDG+ DC + EDE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 40.4 bits (95), Expect = 6e-05
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 249 CNLFEFRCNS-TGQCIPITWVCDGVTDCIDKSDEHH 283
C + E C + + QCIP++W CDG DC DE +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN 36
Score = 40.4 bits (95), Expect = 7e-05
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 160 CSGDKFLCRNGN--CILSRWRCDGDNDCNDGNDGLSSDEMNC 199
C + C + CI WRCDG+NDC+ G DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSG-----EDEENC 37
Score = 39.6 bits (93), Expect = 1e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 847 CSAGQFLCEK-TMKCIPFWWKCDTQDDCGDKSDEHD 881
C + C + +CIP W+CD ++DC DE +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN 36
Score = 38.5 bits (90), Expect = 3e-04
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 31 CRPGYFKC--DNNKCILSSHTCNNINDCGDGSDEADCS 66
CR C + +CI S C+ NDC G DE +C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 37.3 bits (87), Expect = 9e-04
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1212 CEPNRFKCKNN--KCIHRYAMCDGIDNCGDNSDESHCPS 1248
C + C + +CI CDG ++C DE +C +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 36.9 bits (86), Expect = 0.001
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 68 CGNDTFHC--DMGMCIHKALRCDVDPDCPDASDEMHCP 103
C C CI + RCD + DC DE +C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 36.6 bits (85), Expect = 0.001
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 1252 CSEANFKCANGN--CIKKELECDQYNDCGDNSDEEGCDS 1288
C C + CI CD NDC DEE C +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 35.0 bits (81), Expect = 0.005
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 293 CMEGYFKCLNG--RCLLENYYCDGENDCGDNSDE 324
C C +C+ ++ CDGENDC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 35.0 bits (81), Expect = 0.005
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 888 CLPGQFQC--NNTKCLHPNTICDGVNNCGDMSDELHCVD 924
C + C ++T+C+ + CDG N+C DE +C +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 34.6 bits (80), Expect = 0.007
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 927 CLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
C + C Q CI + RCDG DC GEDE +C
Sbjct: 1 CRIHEISCGAHSTQ-----CIPVSWRCDGENDCDSGEDEENC 37
Score = 33.9 bits (78), Expect = 0.014
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 212 FQCDNNKT-CISKSWVCDGTYDCTDRSDE 239
C + T CI SW CDG DC DE
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 33.5 bits (77), Expect = 0.020
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 123 TSACIEESYICDGQNDCFDMSDEQNC 148
++ CI S+ CDG+NDC DE+NC
Sbjct: 12 STQCIPVSWRCDGENDCDSGEDEENC 37
Score = 33.5 bits (77), Expect = 0.023
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 371 NSTHFECQNGN--CIPSVLLCNGVNDCDDNSDE 401
C + CIP C+G NDCD DE
Sbjct: 2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 32.3 bits (74), Expect = 0.045
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 973 CTANEFQC---DVKCISLALVCDKVFDCLDRSDEPADCTS 1009
C +E C +CI ++ CD DC DE +C +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE-ENCGN 39
Score = 30.8 bits (70), Expect = 0.19
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 418 PSHFLCSNGL--CINETLTCNDINDCGDNSDEFSC 450
C CI + C+ NDC DE +C
Sbjct: 3 IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 30.8 bits (70), Expect = 0.21
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 338 NGRCLLENYYCDGENDCGDNSDE 360
+ +C+ ++ CDGENDC DE
Sbjct: 12 STQCIPVSWRCDGENDCDSGEDE 34
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin,
3-10 helix, calcium binding, membrane protein; NMR
{Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 47.9 bits (114), Expect = 2e-07
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 1054 TCDPTYFKC-----NNYKCIPGSWHCDYDDDCGDGSDEKNC 1089
+C P F+C + +C P W CD DC DG DE C
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 43.6 bits (103), Expect = 7e-06
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 1007 CTSQTCGPDYIRC-----DTGRCIPKTWQCDGDVDCPNREDE 1043
+C P RC G C P+ W CDG DC + DE
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 43.2 bits (102), Expect = 8e-06
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 1089 CTPRNCSESEFRCA-----NGKCIRPHYVCNGENDCADHSDEINC 1128
+C +FRC+ +G+C ++C+G DC D DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 42.9 bits (101), Expect = 1e-05
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 1170 KCKPNMFTCA-----NHQCISLNWRCDGEPDCSDNSDE 1202
C P F C+ + +C +W CDG PDC D DE
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 42.9 bits (101), Expect = 1e-05
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 244 CAHSECNLFEFRCNS----TGQCIPITWVCDGVTDCIDKSDE 281
C +FRC+ G+C P W+CDG DC D DE
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 42.5 bits (100), Expect = 2e-05
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 1131 SCSKNEFKCSHPA----HCISSDLVCDGDTDCWDGSDEANC 1167
SC +F+CS P C D +CDG DC DG DE C
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 41.7 bits (98), Expect = 3e-05
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 63 ADCSTCGNDTFHC-----DMGMCIHKALRCDVDPDCPDASDEMHC 102
++ +C F C G C + CD PDC D DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 40.9 bits (96), Expect = 6e-05
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 154 VSPKMNCSGDKFLCR-----NGNCILSRWRCDGDNDCNDGNDGLSSDEMNC 199
+S +C +F C +G C W CDG DC+DG DE C
Sbjct: 1 ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDG-----RDEWGC 46
Score = 40.5 bits (95), Expect = 8e-05
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 845 HNCSAGQFLCEKTM----KCIPFWWKCDTQDDCGDKSDEHD 881
+C GQF C + +C P W CD DC D DE
Sbjct: 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 45
Score = 38.6 bits (90), Expect = 4e-04
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 926 TCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDC 968
+C QF+C P G C CDGHPDC G DE C
Sbjct: 6 SCPPGQFRCSEPP--GAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 37.1 bits (86), Expect = 0.001
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 31 CRPGYFKC-----DNNKCILSSHTCNNINDCGDGSDEADC 65
C PG F+C + +C C+ DC DG DE C
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 36.7 bits (85), Expect = 0.002
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 1252 CSEANFKCA-----NGNCIKKELECDQYNDCGDNSDEEGC 1286
C F+C+ +G C ++ CD + DC D DE GC
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 36.3 bits (84), Expect = 0.003
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 203 STCKANNNVFQC----DNNKTCISKSWVCDGTYDCTDRSDE 239
+C F+C + C + W+CDG DC D DE
Sbjct: 5 GSCPPGQ--FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 35.9 bits (83), Expect = 0.003
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 1206 ICAGLACEPNRFKCK-----NNKCIHRYAMCDGIDNCGDNSDESHC 1246
I +C P +F+C + +C + +CDG +C D DE C
Sbjct: 1 ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 35.2 bits (81), Expect = 0.006
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 292 TCMEGYFKCL-----NGRCLLENYYCDGENDCGDNSDE 324
+C G F+C +G C +++ CDG DC D DE
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 35.2 bits (81), Expect = 0.007
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 123 TSACIEESYICDGQNDCFDMSDEQNC 148
C + ++CDG DC D DE C
Sbjct: 21 HGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 34.8 bits (80), Expect = 0.009
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 360 EPPSCPKTDCDNSTHFECQ-----NGNCIPSVLLCNGVNDCDDNSDE 401
E SCP F C +G C P LC+G DCDD DE
Sbjct: 3 EFGSCP------PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 34.8 bits (80), Expect = 0.009
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 888 CLPGQFQC-----NNTKCLHPNTICDGVNNCGDMSDELHC 922
C PGQF+C + +C + +CDG +C D DE C
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 32.5 bits (74), Expect = 0.052
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 968 CMPKNCTANEFQCDV------KCISLALVCDKVFDCLDRSDE 1003
+C +F+C +C +CD DC D DE
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 31.3 bits (71), Expect = 0.17
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 418 PSHFLCS-----NGLCINETLTCNDINDCGDNSDEFSC 450
P F CS +G C + C+ DC D DE+ C
Sbjct: 9 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 30.9 bits (70), Expect = 0.20
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 338 NGRCLLENYYCDGENDCGDNSDE 360
+G C +++ CDG DC D DE
Sbjct: 21 HGECYPQDWLCDGHPDCDDGRDE 43
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 46.6 bits (111), Expect = 7e-07
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 504 CSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVP 539
C +CR CSCA GY L D C +T P
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP 43
Score = 38.9 bits (91), Expect = 3e-04
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 810 NNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMK 859
+NGGC C + + +C+C ++L D K+C S +F C K +
Sbjct: 4 DNGGCDQFCREERSE-VRCSCAHGYVLGDDSKSCV---STERFPCGKFTQ 49
Score = 37.0 bits (86), Expect = 0.002
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 455 CNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNEC 499
C++ +GG C C + + +C+C GY + D CV T
Sbjct: 1 CSLDNGG--CDQFCREERSEVRCSCAHGYVLGD-DSKSCVSTERF 42
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 46.2 bits (110), Expect = 8e-07
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 504 CSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVP 539
C +C S CSCA GY L + C T P
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 46
Score = 38.9 bits (91), Expect = 3e-04
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 453 NECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNEC 499
C++ +G C C + + C+C +GY + + C+ T
Sbjct: 2 KLCSLDNGD--CDQFCHEEQNSVVCSCARGYTLAD-NGKACIPTGPY 45
Score = 38.5 bits (90), Expect = 4e-04
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 810 NNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCR--HNCSAGQFLCEK 856
+NG C C + N C+C + L +GK C G+ E+
Sbjct: 7 DNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPTGPYPCGKQTLER 54
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 51.3 bits (123), Expect = 1e-06
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 461 GQLCAHE--CIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDR---PCSHYCRNTLGSY 515
Q C H C D GY C C GY E + + NEC C H+C SY
Sbjct: 10 SQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 516 SCSCAPGYALLSDKHGCKATSDVPPNLLFTNKY 548
+CSCA GY L D C +L + K
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKR 98
Score = 34.7 bits (80), Expect = 0.20
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 19/103 (18%)
Query: 38 CDNN-KCI--LSSHTCNNINDCGDGSDEADCSTCGNDTFHCDMGMCIHKALRCDVDPDCP 94
C +N C + +TC C G + ++C N+ C H C
Sbjct: 13 CLHNGSCQDSIWGYTC----TCSPGYEGSNCELAKNECHPERTDGCQH---------FCL 59
Query: 95 DASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQN 137
+ C C + Y L + C C + +
Sbjct: 60 PGQESYTCS---CAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
Score = 34.3 bits (79), Expect = 0.23
Identities = 14/98 (14%), Positives = 20/98 (20%), Gaps = 12/98 (12%)
Query: 133 CDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGL 192
C C D C NC K C + C G
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGS-NCELAKNECHPERT------DGCQHFCLPG---- 61
Query: 193 SSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGT 230
+ C + + QC + C +
Sbjct: 62 -QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKR 98
Score = 33.9 bits (78), Expect = 0.32
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 494 VDTNECLDRPCSH--YCRNTLGSYSCSCAPGY 523
+ C+ +PC H C++++ Y+C+C+PGY
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGY 34
Score = 33.1 bits (76), Expect = 0.62
Identities = 13/75 (17%), Positives = 17/75 (22%), Gaps = 6/75 (8%)
Query: 1062 CNNYKCIPGSWHCDYDDDCGDGSDEKNCT--PRNCSESEFRCANGKCIRPH--YVCNGEN 1117
+N C Y C G + NC C C+ Y C+
Sbjct: 14 LHNGSCQDSI--WGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQ 71
Query: 1118 DCADHSDEINCNISC 1132
D C
Sbjct: 72 GYRLGEDHKQCVPHD 86
Score = 32.8 bits (75), Expect = 0.79
Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 17/102 (16%)
Query: 805 DNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPF- 863
PC +NG CQ C C + +G C + + E+T C F
Sbjct: 10 SQPCLHNGSCQDSI-----WGYTCTCSPGY----EGSNC--ELAKNECHPERTDGCQHFC 58
Query: 864 -----WWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKC 900
+ C D P C G
Sbjct: 59 LPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
Score = 30.4 bits (69), Expect = 4.0
Identities = 10/79 (12%), Positives = 17/79 (21%), Gaps = 10/79 (12%)
Query: 1190 CDGEPDCSDNSDEIESICA----GLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESH 1245
C C D+ C+ G CE + +C + C +
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT------DGCQHFCLPGQESYT 66
Query: 1246 CPSIKLCSEANFKCANGNC 1264
C +
Sbjct: 67 CSCAQGYRLGEDHKQCVPH 85
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 44.7 bits (106), Expect = 3e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 810 NNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCR 844
NGGC+ C R C C + + L +DG +C
Sbjct: 5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
Score = 40.4 bits (95), Expect = 8e-05
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 504 CSHYCRNTLGS-YSCSCAPGYALLSDKHGCKATSDVP 539
C YC + G+ SC C GY+LL+D C T + P
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 45
Score = 29.7 bits (67), Expect = 0.72
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 455 CNVSHGGQLCAHECIDLKIG-YKCACRKGYQVHPEDKHLCVDTNECLDRPC 504
C +GG C C D C C +GY + D C T E PC
Sbjct: 2 CVNENGG--CEQYCSDHTGTKRSCRCHEGYSLLA-DGVSCTPTVEY---PC 46
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 44.4 bits (105), Expect = 5e-06
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 810 NNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCR 844
NG C+ C + C+C + + L + K+C
Sbjct: 5 KNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 39
Score = 40.9 bits (96), Expect = 8e-05
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 504 CSHYCRNTLG-SYSCSCAPGYALLSDKHGCKATSDVP 539
C +C+N+ CSC GY L ++ C+ P
Sbjct: 9 CEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFP 45
Score = 29.7 bits (67), Expect = 0.69
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 455 CNVSHGGQLCAHECIDLKIG-YKCACRKGYQVHPEDKHLCVDTNECLDRPC 504
CN+ +G C C + C+C +GY++ E++ C PC
Sbjct: 2 CNIKNGR--CEQFCKNSADNKVVCSCTEGYRLA-ENQKSCEPAVPF---PC 46
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 46.7 bits (111), Expect = 7e-06
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 493 CVDTNEC---LDRPCSHYCRNTLGSYSCSCAPGYALLSDKHGCK 533
D NEC +D PCSH+C N +G Y CSC P Y L D C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
Score = 31.3 bits (71), Expect = 1.2
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 793 RVYHPYRQTPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHN 846
Y T + + + C C G+ C+CP + L D K C N
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYF-CSCPPEYFLHDDMKNCGVN 159
Score = 30.2 bits (68), Expect = 2.4
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 1043 EPPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCT 1090
+ C D C CNN+ G + C + D KNC
Sbjct: 116 DINECTDFVDVPCS---HFCNNF---IGGYFCSCPPEYFLHDDMKNCG 157
Score = 28.6 bits (64), Expect = 8.9
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 863 FWWKCDTQDDCGDKSDEHDQCPQF-HCLPGQFQCNNTKCLHPNTICDGVNNCGD 915
++ ++C D D C F + G + C+ C + D + NCG
Sbjct: 110 AYYVATDINECTDFVDVP--CSHFCNNFIGGYFCS---CPPEYFLHDDMKNCGV 158
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 44.0 bits (104), Expect = 8e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 810 NNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCR 844
NGGC+ C R C C + + L +DG +C
Sbjct: 11 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 45
Score = 40.9 bits (96), Expect = 9e-05
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 493 CVDTNECLDRP--CSHYCRNTLGS-YSCSCAPGYALLSDKHGCKATSDVP 539
D C++ C YC + G+ SC C GY+LL+D C T + P
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 51
Score = 32.8 bits (75), Expect = 0.068
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 452 VNECNVSHGGQLCAHECIDLKIG-YKCACRKGYQVHPEDKHLCVDTNECLDRPCSH 506
C +GG C C D C C +GY + D C T E PC
Sbjct: 5 QLICVNENGG--CEQYCSDHTGTKRSCRCHEGYSLLA-DGVSCTPTVEY---PCGK 54
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 48.2 bits (115), Expect = 1e-05
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 27/141 (19%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQ---------EPRGIA 658
P G T++ + L++ + + +D + +V + + +PR +
Sbjct: 90 KPFGATINNTTQTLWFGNTVNSAVTA--IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV 147
Query: 659 LNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVI--ISKNLSWPNALTISYETNELFWGDAH 716
+ A +Y + G+ + I +DG N K+ I L + E L+
Sbjct: 148 ADDATNTVYISGIGKESVI--WVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLY----- 200
Query: 717 EDYIAVSDLNGENIKIIVSRR 737
++ +GE I I +
Sbjct: 201 -----TTNADGELITIDTADN 216
Score = 36.3 bits (84), Expect = 0.059
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 607 PATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQEPRGIALNPAYG 664
A + + Y + + V +D + KV+ + P +AL+
Sbjct: 270 AAPESLAVLFNPARNEAYVTHRQAGKVSV--IDAKSYKVVKTFDTP-THPNSLALSADGK 326
Query: 665 YMYWTDWGQNAHIGKAKMDGSNPKVI 690
+Y + ++ K + VI
Sbjct: 327 TLYVSVKQKST---KQQEATQPDDVI 349
Score = 36.3 bits (84), Expect = 0.068
Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 8/158 (5%)
Query: 574 FDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPAT--SPDGLTVDWVGRNLYWCDKG-- 629
D N +Y S + N + + T GL +D G+ LY +
Sbjct: 148 ADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE 207
Query: 630 LDTIEVAKLDGRFRKVLINKGLQ-EPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPK 688
L TI+ A RK L++ G + I+L+ A + TD +D N
Sbjct: 208 LITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA---EVLVVDTRNGN 264
Query: 689 VIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLN 726
++ A+ + NE + ++V D
Sbjct: 265 ILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAK 302
Score = 35.9 bits (83), Expect = 0.083
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 608 ATSPDGLTVDWVGRNLYWCDKGLDTIE----VAKLDGRFRKVL--INKGLQEPRGIALNP 661
+ L+ ++ V +LD +V I+ +P G +N
Sbjct: 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINN 98
Query: 662 AYGYMYWTDWGQNA 675
+++ + +A
Sbjct: 99 TTQTLWFGNTVNSA 112
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 47.1 bits (112), Expect = 2e-05
Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 23/189 (12%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLI----------NKGLQEPRGIAL 659
P GL++D G N + D L + + +LI +P +A+
Sbjct: 92 LPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV 150
Query: 660 NPAYGYMYWTDWGQNAHIGKAKMDGS---------NPKVIISKNLSWPNALTISYETNEL 710
P+ G ++ +D N+ I + G + S P++L + ++L
Sbjct: 151 EPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL 210
Query: 711 FWGDAHEDYIAVSDLNGENI--KIIVSRRMDPTINLHHVFALAVFED-HLFWTDWEMKSI 767
D I + + +I + + ++ + ++ D E
Sbjct: 211 CVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQG 270
Query: 768 ERCDKYTGK 776
+ +G+
Sbjct: 271 FVMNFSSGE 279
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 43.8 bits (104), Expect = 5e-05
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 20/126 (15%)
Query: 423 CSNGLCINETLTCNDINDCGDNSDEFSC---FVNECNVS---HGGQLCAHECIDLKIGYK 476
C C E ++ + D ++EF ++C S + G+ C D Y
Sbjct: 12 CMEETCSYEE--AREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGK-----CKDGLGEYT 64
Query: 477 CACRKGYQVHPEDKHLCVDTNE-CLDRPC--SHYCRNTLGSYSCSCAPGYALLSDKHGCK 533
C C +G+ E K+ + T + C +C S CSCA GY L + C
Sbjct: 65 CTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
Query: 534 ATSDVP 539
T P
Sbjct: 121 PTGPYP 126
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 43.7 bits (104), Expect = 5e-05
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 38/120 (31%)
Query: 434 TCNDINDCGDNS-------------DEFSCF-------------VNECNVSHGGQLCAHE 467
+ D+++C + F C VNEC C ++
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECV----SNPCQND 56
Query: 468 --CIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSH--YCRNTLGSYSCSCAPGY 523
C+D ++C C GY E H V+T+EC PC H C + + + C C G+
Sbjct: 57 ATCLDQIGEFQCICMPGY----EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGF 112
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 44.2 bits (104), Expect = 5e-05
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 493 CVDTNECLDRPCS-----HYCRNTLGSYSCSCAPGYALLSDKHGCKATS 536
D +EC P H+C N LG + CSC GY L +K C S
Sbjct: 121 AEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 30.3 bits (68), Expect = 2.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 452 VNECNVSHGGQLC-AHECIDLKIGYKCACRKGYQVHPEDKHLCVDTN 497
++EC V+ G H C + G+ C+CR GY +H +K C + +
Sbjct: 124 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLH-RNKRTCSEQS 169
Score = 29.5 bits (66), Expect = 5.5
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 807 PCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNC 847
C C G C+C ++L + +TC
Sbjct: 130 APGEAPTCDHHCHNHLGGFY-CSCRAGYVLHRNKRTCSEQS 169
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 44.3 bits (103), Expect = 8e-05
Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 9/165 (5%)
Query: 377 CQNGNCIPSV-----LLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCINE 431
C NG + + G+ +N+ E+ N +L C + +
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVN 72
Query: 432 TLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKH 491
C I D V + C E + C+C G +PED+
Sbjct: 73 MYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEX 132
Query: 492 LCVDTNECLDR----PCSHYCRNTLGSYSCSCAPGYALLSDKHGC 532
C T E + + C N G Y C C G+ + + C
Sbjct: 133 XCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVC 177
Score = 32.3 bits (72), Expect = 0.64
Identities = 22/168 (13%), Positives = 39/168 (23%), Gaps = 15/168 (8%)
Query: 335 KCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNG---NCIPSVLLCNG 391
C G L C+ N+C + C + N CI L
Sbjct: 28 MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXED 87
Query: 392 VNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCINETLTCNDINDCGDNSDEFSCF 451
D + + CS C +
Sbjct: 88 TCVLDVC-QYXNCGESGECIVEYLSEIQSAGCS----------CAIGXVPNPEDEXXCTX 136
Query: 452 VNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNEC 499
E C +++ Y C C +G+ + ++C+ +
Sbjct: 137 TGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDX-EXNVCLGPHHH 183
Score = 29.6 bits (65), Expect = 5.5
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 13/86 (15%)
Query: 467 ECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRP-----------CSHYCRNTLGSY 515
+ + + + C C +G ++ C + NEC + + Y
Sbjct: 17 QLVQMSNHFXCMCNEGLV--HLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMY 74
Query: 516 SCSCAPGYALLSDKHGCKATSDVPPN 541
C C GY L D
Sbjct: 75 XCGCIEGYTLXEDTCVLDVCQYXNCG 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 45.7 bits (108), Expect = 9e-05
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 14/126 (11%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQEPRGIALNPAYGYMY 667
L D + +Y + + I V +D + + + +K PRG+ L+ +Y
Sbjct: 213 WSKILLYDPIRDLVYCSNWISEDISV--IDRKTKLEIRKTDKI-GLPRGLLLSKDGKELY 269
Query: 668 WTDWGQNAHIGKAKM----DGSNPKVIISKNL---SWPNALTISYETNELFWGDAHEDYI 720
+ + K+I + + N+++ D I
Sbjct: 270 IAQFSASNQESGGGRLGIYSMDKEKLI--DTIGPPGNKRHIVSGNTENKIYVSDMCCSKI 327
Query: 721 AVSDLN 726
V DL
Sbjct: 328 EVYDLK 333
Score = 39.5 bits (92), Expect = 0.007
Identities = 29/133 (21%), Positives = 44/133 (33%), Gaps = 17/133 (12%)
Query: 609 TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQEPRGIALNPAYGYM 666
+ + +Y D IEV D + +KV I + P IAL+P Y+
Sbjct: 303 GNKRHIVSGNTENKIYVSDMCCSKIEV--YDLKEKKVQKSIPVFDK-PNTIALSPDGKYL 359
Query: 667 YWTDWGQNAHIGKAKMDGSNPK---VIISKNL---------SWPNALTISYETNELFWGD 714
Y + G N G VI + + P L +S + L D
Sbjct: 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISD 419
Query: 715 AHEDYIAVSDLNG 727
+ I V +G
Sbjct: 420 FLDHQIRVYRRDG 432
Score = 34.1 bits (78), Expect = 0.35
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 608 ATSPDGLTVDWV------GRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQEPRGIAL 659
A SPDG + +V + KGL +V +D V G +P G+ +
Sbjct: 351 ALSPDGKYL-YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDV 408
Query: 660 NPAYGYMYWTDWGQN 674
+P Y+ +D+ +
Sbjct: 409 SPDNRYLVISDFLDH 423
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-04
Identities = 98/596 (16%), Positives = 157/596 (26%), Gaps = 234/596 (39%)
Query: 482 GYQVHPEDKHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVP-P 540
GY + ++ L+ + + L +D H A
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG------------NDIHALAAKLLQEND 113
Query: 541 NLLFTNKYYIREVTQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNS 600
L K I+ A +M R S++ R+
Sbjct: 114 TTLVKTKELIKNYITARIMAKR---------------------PFDKKSNSALFRAVGEG 152
Query: 601 QPEL--LFPATSPDGLTVDWVG--RNLYWCDKGL--DTIEVA------------KLDGRF 642
+L +F G T D+ R+LY L D I+ + + F
Sbjct: 153 NAQLVAIFGG---QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 643 RKVL-INKGLQEPRGIALNPAYGYM----------YWTDWGQNAH-IGKAKMDGSNPK-- 688
+ L I + L+ P + P Y+ Q AH + AK+ G P
Sbjct: 210 TQGLNILEWLENP---SNTPDKDYLLSIPISCPLIGVI---QLAHYVVTAKLLGFTPGEL 263
Query: 689 -----------------VIISKNLSWPNALTISYETNE-LFW-G-DAHEDY--------- 719
V I++ SW + + LF+ G +E Y
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 720 IAVSDLNGENIKIIVSRRMDPTINLHHVFALAV---FEDHLFWTDWEMKSIERCDKYTGK 776
+ S N E + P+ L++ ++ + + + + +
Sbjct: 324 LEDSLENNEGV---------PS------PMLSISNLTQEQVQ------DYVNKTNSHLPA 362
Query: 777 N---CTSVV---KNLV---HKPMDLRVYHPYRQTPLKDNPCENNGGCQGLC--LLK---P 822
S+V KNLV P L GL L K P
Sbjct: 363 GKQVEISLVNGAKNLVVSGP-PQSLY----------------------GLNLTLRKAKAP 399
Query: 823 NGHRQC------------------ACPDNF---ILESDGKTCRHNCSAGQFLCE-KTMKC 860
+G Q A P F +L + K ++
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQ- 456
Query: 861 IPFWWKCDTQDDCG------DKSDEHDQCPQFHCLPGQFQ-CNNTKCLHPNTICD----G 909
IP + DT D G S LP +++ K H I D G
Sbjct: 457 IPVY---DTFD--GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH---ILDFGPGG 508
Query: 910 VNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCI---SLLNRCDGHPDCPLG 962
+ G ++ GTG I +L D +PD G
Sbjct: 509 ASGLGVLTHRN------------------KDGTGVRVIVAGTL----DINPDDDYG 542
Score = 33.5 bits (76), Expect = 0.64
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 38/150 (25%)
Query: 1269 LECDQYNDCGDNSDEEGCDSPLCKFRTCSQICIEKKISNTERTFSCHCAEGYHMVHG--K 1326
L D +N+ EG SP+ +Q ++ + + H G V
Sbjct: 319 LPPSILEDSLENN--EGVPSPMLSISNLTQEQVQDYV----NKTNSHLPAGKQ-VEISLV 371
Query: 1327 NKTSSCVANGKSALLLIAHTTL-KV-----LD----PYASRAKSEI------------SP 1364
N + V +G L + TL K LD P++ R K + S
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVASPFHSH 430
Query: 1365 LNLDATKIYSVDLLYEDRN------NIMVY 1388
L + A+ + + DL+ + + I VY
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 41.5 bits (98), Expect = 3e-04
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 468 CIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPC-----SHYCRNTLGS-YSCSCAP 521
C D Y C C + E ++ ++ L YC + G+ SC C
Sbjct: 61 CKDQLQSYICFCLPAF----EGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHE 116
Query: 522 GYALLSDKHGCKATSDVP 539
GY+LL+D C T + P
Sbjct: 117 GYSLLADGVSCTPTVEYP 134
Score = 34.6 bits (80), Expect = 0.065
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 464 CAHECIDLKIGYKCACRKGYQVHP--EDKHLCVDTNECLDRPCSHY--CRNTLGSYSCSC 519
EC + + ++ A D ++C PC + C++ L SY C C
Sbjct: 13 LERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC 72
Query: 520 APGY 523
P +
Sbjct: 73 LPAF 76
Score = 30.8 bits (70), Expect = 1.5
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 804 KDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
EN GGC+ C R C C + + L +DG +C
Sbjct: 89 LICVNEN-GGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 42.4 bits (100), Expect = 3e-04
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 12/122 (9%)
Query: 423 CSNGLCINETLTCNDINDCGDNSDEFSC---FVNECNVSHGGQLCAHECIDLKIGYKCAC 479
C C E ++ + D ++EF ++C S +C D Y C C
Sbjct: 12 CMEETCSYEE--AREVFEDSDKTNEFWNKYKDGDQCETSPC--QNQGKCKDGLGEYTCTC 67
Query: 480 RKGYQVHPEDKHLCVDTNECLDRPC--SHYCRNTLGSYSCSCAPGYALLSDKHGCKATSD 537
+G++ C +C S CSCA GY L + C T
Sbjct: 68 LEGFE---GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124
Query: 538 VP 539
P
Sbjct: 125 YP 126
Score = 35.9 bits (83), Expect = 0.049
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 6/63 (9%)
Query: 463 LCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSH--YCRNTLGSYSCSCA 520
C C + + C+C +GY PC R + +
Sbjct: 90 DCDQFCHEEQNSVVCSCARGY----TLADNGKACIPTGPYPCGKQTLERRKRSVAQATSS 145
Query: 521 PGY 523
G
Sbjct: 146 SGE 148
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 41.6 bits (98), Expect = 4e-04
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 468 CIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPC-SHYCRNTLGS-YSCSCAPGYAL 525
C D Y+C C+ G+ E K+ +D + +C+ S CSC GY L
Sbjct: 62 CKDDINSYECWCQVGF----EGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRL 117
Query: 526 LSDKHGCKATSDVP 539
D+ CK P
Sbjct: 118 APDQKSCKPAVPFP 131
Score = 36.2 bits (84), Expect = 0.021
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 467 ECIDLKIGYKCACRKGYQVHP--EDKHLCVDTNECLDRPCSH--YCRNTLGSYSCSCAPG 522
ECI+ K ++ A E VD ++C PC + C++ + SY C C G
Sbjct: 17 ECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVG 76
Query: 523 Y 523
+
Sbjct: 77 F 77
Score = 30.8 bits (70), Expect = 1.4
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 805 DNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTC 843
NG C+ C + C+C + L D K+C
Sbjct: 86 ATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 43.7 bits (103), Expect = 4e-04
Identities = 20/125 (16%), Positives = 30/125 (24%), Gaps = 18/125 (14%)
Query: 133 CDGQNDCFDMSDEQNCDQIKDVSPKMN-------------CSGDKFLCRNGNCILSRWRC 179
C + ++ D V N C G C L+
Sbjct: 36 CLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEE 95
Query: 180 DGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE 239
+ + DG DE + A + N T S C +S E
Sbjct: 96 AVEEETGDG-----LDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLE 150
Query: 240 NSTYC 244
+ T
Sbjct: 151 DKTER 155
Score = 41.8 bits (98), Expect = 0.001
Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 24/139 (17%)
Query: 1074 CDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCS 1133
C + K+ S + C N + D + + C ++
Sbjct: 36 CLAWASAQAKALSKHQD----FNSAVQLVENFC------RNPDGD----EEGVWCYVAGK 81
Query: 1134 KNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC----TTKCKPNMFTCANHQCI-SLNW 1188
+F +C + + DG DE + T N S
Sbjct: 82 PGDFGYCDLNYC-----EEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEA 136
Query: 1189 RCDGEPDCSDNSDEIESIC 1207
C P S E ++
Sbjct: 137 DCGLRPLFEKKSLEDKTER 155
Score = 37.5 bits (87), Expect = 0.026
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 11/91 (12%)
Query: 19 SDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADC-----STCGNDTF 73
DE ++C + + CD N C + GDG DE +T ++
Sbjct: 69 GDEEGVWCYVAGKPGDFGYCDLNYC-----EEAVEEETGDGLDEDSDRAIEGATATSEYQ 123
Query: 74 HCDMGMCIHKA-LRCDVDPDCPDASDEMHCP 103
C + P S E
Sbjct: 124 TFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Score = 36.4 bits (84), Expect = 0.062
Identities = 16/140 (11%), Positives = 27/140 (19%), Gaps = 23/140 (16%)
Query: 312 CDGENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDN 371
C + + N L +C + + C
Sbjct: 36 CLAWASAQAKALS--------KHQDFNSAVQLVENFCRNPDGDEE----GVWCYVAGK-- 81
Query: 372 STHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCINE 431
G C + + D DED R+++ + N
Sbjct: 82 ----PGDFGYCDLNYCEEAVEEETGDGLDEDS----DRAIEGATATSEYQTFFNPATFGS 133
Query: 432 -TLTCNDINDCGDNSDEFSC 450
C S E
Sbjct: 134 GEADCGLRPLFEKKSLEDKT 153
Score = 36.0 bits (83), Expect = 0.079
Identities = 17/138 (12%), Positives = 25/138 (18%), Gaps = 20/138 (14%)
Query: 1113 CNGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCK 1172
C + + + + + C + D DE C
Sbjct: 36 CLAWASAQAKALSKHQDFNS---AVQLVEN-FCRNPD------------GDEEGVW--CY 77
Query: 1173 PNMFTCANHQCISLNWRCDGEPDCSDNSDE-IESICAGLACEPNRFKCKNNKCI-HRYAM 1230
C E + D DE + G N A
Sbjct: 78 VAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEAD 137
Query: 1231 CDGIDNCGDNSDESHCPS 1248
C S E
Sbjct: 138 CGLRPLFEKKSLEDKTER 155
Score = 35.6 bits (82), Expect = 0.12
Identities = 19/143 (13%), Positives = 30/143 (20%), Gaps = 22/143 (15%)
Query: 8 TCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCST 67
C + K+ +D + N C DE
Sbjct: 35 PCLAWASAQAKALSK-----HQDFNSA-VQLVENFC------------RNPDGDEEGVW- 75
Query: 68 CGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACI 127
C D G C V+ + D DE E + +
Sbjct: 76 CYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSD---RAIEGATATSEYQTFFNPATFG 132
Query: 128 EESYICDGQNDCFDMSDEQNCDQ 150
C + S E ++
Sbjct: 133 SGEADCGLRPLFEKKSLEDKTER 155
Score = 35.2 bits (81), Expect = 0.17
Identities = 16/126 (12%), Positives = 24/126 (19%), Gaps = 22/126 (17%)
Query: 1189 RCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPS 1248
C + + + N C + DE
Sbjct: 35 PCLAWASAQAKALSKHQDF------NSAVQLVENFC------------RNPDGDEEGVW- 75
Query: 1249 IKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQICIEKKISNT 1308
C A G C E + GD DE+ + T +
Sbjct: 76 ---CYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFG 132
Query: 1309 ERTFSC 1314
C
Sbjct: 133 SGEADC 138
Score = 33.7 bits (77), Expect = 0.42
Identities = 21/124 (16%), Positives = 28/124 (22%), Gaps = 27/124 (21%)
Query: 269 CDGVTDCIDKSDEHHSQD----------CLNVETCMEG------YFKCLNGRCLLENYYC 312
C K+ H C N + EG G C L
Sbjct: 36 CLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEE 95
Query: 313 DGENDCGDNSDEPIVSMWKLV------WKCLNGRCLLENYYCDGENDCGDNSDEPPSCPK 366
E + GD DE + N + GE DCG +
Sbjct: 96 AVEEETGDGLDEDSDRAIEGATATSEYQTFFNPAT-----FGSGEADCGLRPLFEKKSLE 150
Query: 367 TDCD 370
+
Sbjct: 151 DKTE 154
Score = 32.5 bits (74), Expect = 1.2
Identities = 16/145 (11%), Positives = 23/145 (15%), Gaps = 21/145 (14%)
Query: 952 RCDGHPDCPLGEDEHDCMPKNCTANEFQCDVKCISLALVCDKVFDCLDRSDEPADCTSQT 1011
C + Q C + +
Sbjct: 35 PCLAWASAQAKALSKHQD----FNSAVQLVENF------------CRNPDGDEEGVWCYV 78
Query: 1012 CGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIP-G 1070
G D G C + + + + DE T Y N G
Sbjct: 79 AGK---PGDFGYCDLNYCEEAVEEETGDGLDEDS-DRAIEGATATSEYQTFFNPATFGSG 134
Query: 1071 SWHCDYDDDCGDGSDEKNCTPRNCS 1095
C S E
Sbjct: 135 EADCGLRPLFEKKSLEDKTERELLE 159
Score = 31.0 bits (70), Expect = 3.0
Identities = 14/153 (9%), Positives = 28/153 (18%), Gaps = 29/153 (18%)
Query: 45 LSSHTCNNINDCGDGSDEADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPM 104
C + N C D D + C +
Sbjct: 31 THGLPCLAWASAQAKALSKHQDF--NSAVQLVENFC----RNPDGDEEGVW------CYV 78
Query: 105 TNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDK 164
+ C + + D DE + I+ + + +
Sbjct: 79 AGKPGDF------------GYCDLNYCEEAVEEETGDGLDEDSDRAIEGAT----ATSEY 122
Query: 165 FLCRNGNCILS-RWRCDGDNDCNDGNDGLSSDE 196
N S C + ++
Sbjct: 123 QTFFNPATFGSGEADCGLRPLFEKKSLEDKTER 155
Score = 30.6 bits (69), Expect = 4.2
Identities = 15/133 (11%), Positives = 23/133 (17%), Gaps = 28/133 (21%)
Query: 866 KCDTQDDCGDKSDEH-------DQCPQFHCLPG------------QFQCNNTKCLHPNTI 906
C K+ Q + C + C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 907 CDGVNNCGDMSDELHC---VDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGE 963
GD DE T + G+G+ C P
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEA------DCGLRPLFEKKS 148
Query: 964 DEHDCMPKNCTAN 976
E + +
Sbjct: 149 LEDKTERELLESY 161
Score = 29.4 bits (66), Expect = 8.2
Identities = 16/120 (13%), Positives = 27/120 (22%), Gaps = 10/120 (8%)
Query: 213 QCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHS-----ECNLFEFRCNST-GQCIPIT 266
C + +K+ ++ + EN +C + + G C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVEN--FCRNPDGDEEGVWCYVAGKPGDFGYCDLNY 92
Query: 267 WVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGRCL-LENYYCDGENDCGDNSDEP 325
+ D DE + T Y N C S E
Sbjct: 93 CEEAVEEETGDGLDEDSD-RAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLED 151
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 40.9 bits (96), Expect = 5e-04
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 437 DINDCGDNSDEFSCFVNECNVS---HGG--QLCAHECIDLKIGYKCACRKGYQVHPEDKH 491
+ D + S C + +GG ++ D IGY C C +G+ H
Sbjct: 39 VVEVASDEEEPTS--AGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGF----NGIH 92
Query: 492 LCVDTNECLDRPCSH--YCRNTLGSYSCSCAPGY 523
+ NEC PC + C + + +YSC C +
Sbjct: 93 CQHNINECEVEPCKNGGICTDLVANYSCECPGEF 126
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 42.4 bits (100), Expect = 6e-04
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 490 KHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVP 539
K+ C C H+C SY+CSCA GY L D C
Sbjct: 2 KNECHPER---TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 48
Score = 32.4 bits (74), Expect = 0.91
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 453 NECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNEC 499
NEC+ C H C+ + Y C+C +GY++ D CV ++C
Sbjct: 3 NECHPERTDG-CQHFCLPGQESYTCSCAQGYRLGE-DHKQCVPHDQC 47
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 42.4 bits (99), Expect = 6e-04
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Query: 450 CFVNEC-NVSHGGQLCAHECIDLKIGYKCACRKGYQ---VHPEDKHLCVDTNECLDRPCS 505
C N H + A EC D G+ C C Y + N +
Sbjct: 3 LAQQTCANNRHQCSVHA-ECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIF 61
Query: 506 HYCRNTLGSYSCSCAPGYALLSDKHGCKATSDVPPNL 542
+ + Y +++ A S +P +
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETV 98
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 42.5 bits (100), Expect = 8e-04
Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 609 TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQEPRGIALNPAYGYM 666
++P G + G +Y + + + + +D V+ + G P+G+A++P +
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAG-SSPQGVAVSPDGKQV 88
Query: 667 YWTDWGQNAHIGKAKMDGSNPKVIISKNL-SWPNALTISYETNELFWGDAHEDYIAVSDL 725
Y T+ + + + +D ++ V + P L +S + +L+ + + ++V +
Sbjct: 89 YVTNMASS-TL--SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145
Query: 726 N 726
Sbjct: 146 V 146
Score = 40.5 bits (95), Expect = 0.004
Identities = 31/167 (18%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 609 TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQEPRGIALNPAYGYM 666
SP GL + G+ LY + G T V+ ++ + V+ ++ G + P+GIA+ P +
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKT--VSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKV 172
Query: 667 YWTDWGQNAHIGKAKMDGSNPKVIISKNL-SWPNALTISYETNELFWGDAHEDYIAVSDL 725
Y ++ + I + +D VI + + + P+ + ++ E + Y+ D
Sbjct: 173 YVANFDSMS-I--SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKA--------YVTNVDK 221
Query: 726 NGENIKII--VSRRMDPTINLH-HVFALAVFED--HLFWTDWEMKSI 767
+ +I + ++ I + +AV D ++ ++
Sbjct: 222 YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTV 268
Score = 32.1 bits (73), Expect = 1.4
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL--INKGLQEPRGIALNPAYGYMY 667
P G+ V G+ +Y +T+ V +D + + G + P +
Sbjct: 245 DPAGIAVTPDGKKVYVALSFXNTVSV--IDTATNTITATMAVG-KNPYASGQFIGSIPVQ 301
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 42.3 bits (99), Expect = 8e-04
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 9/120 (7%)
Query: 545 TNKYYIREVTQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGS----SIRRSCNNS 600
I + A GL N LY S+ T + +
Sbjct: 147 QPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSN-TEKMLLLRIPVDSTDKPG 203
Query: 601 QPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL-INKGLQEPRGIAL 659
+PE+ T+ D D G NLY +++ D + +G+ +A
Sbjct: 204 EPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF 262
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 39.5 bits (93), Expect = 0.005
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 17/130 (13%)
Query: 609 TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKG-----LQEPRGIALNPAY 663
T P G+ V+ ++ D I++ +GRF+ G L P +A+
Sbjct: 30 TEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNS 88
Query: 664 GYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVS 723
G + T+ I G + + L P +T+ ++ I V
Sbjct: 89 GDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVD-----------NKGRIIVV 137
Query: 724 DLNGENIKII 733
+ + I
Sbjct: 138 ECKVMRVIIF 147
Score = 37.6 bits (88), Expect = 0.024
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRF-RKVLINKGLQEPRGIALNPAYGYMYW 668
P G+TVD G + + + + + +G K +K L+ P G+ +N ++
Sbjct: 122 HPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QEIFI 179
Query: 669 TDWGQN 674
+D +
Sbjct: 180 SDNRAH 185
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 39.7 bits (92), Expect = 0.005
Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 24/153 (15%)
Query: 544 FTNKYYIREVTQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPE 603
+ + Y+ + + + + ++ +N LY D H
Sbjct: 57 YASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH--LSVVGSEGGHAT 114
Query: 604 LLF------PATSPDGLTVDWVGRNLYW---------CDKGLDTIE------VAKLDGRF 642
L P +TVD +Y+ + K D
Sbjct: 115 QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174
Query: 643 RKV-LINKGLQEPRGIALNPAYGYMYWTDWGQN 674
++ L+ K L P G ++ ++ ++ +
Sbjct: 175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSH 207
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 39.6 bits (92), Expect = 0.006
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWT 669
P + ++ LYW + + + V R L + + G+ +NP G +Y
Sbjct: 226 WPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRD-TKYYGLTVNPNNGEVYVA 284
Query: 670 DWGQNAHIGKAKMDGSNPKVI 690
D G K+I
Sbjct: 285 DAIDYQQQGIVYRYSPQGKLI 305
Score = 36.9 bits (85), Expect = 0.043
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 6/118 (5%)
Query: 554 TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELLFPATSPDG 613
T + + + + LYW + + + +P L F T G
Sbjct: 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYG 271
Query: 614 LTVDWVGRNLYWCD----KGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMY 667
LTV+ +Y D + + G+ G P + + +
Sbjct: 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDE-FYVG-IIPGAFCWKLEHHHHH 327
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.006
Identities = 61/416 (14%), Positives = 104/416 (25%), Gaps = 143/416 (34%)
Query: 589 HGSSIRRSCNNSQPEL--LFPATS-PDGLTV-DWVGRNLYW-----------C------- 626
H S+I+ ++ Q EL L + + L V V C
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNAKAWNAFNLSCKILLTTR 273
Query: 627 DKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAK----M 682
K + A + L +L + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----------LLKYLDCRPQDLPREV 322
Query: 683 DGSNPKVI--ISKNLS-WPNALTISYETNELFWGDAHEDYIAVSDLNGENIKIIVSRRMD 739
+NP+ + I++++ T W ++ L I+ ++ ++
Sbjct: 323 LTTNPRRLSIIAESIRDGLA--TWDN------W-----KHVNCDKLT-TIIESSLNV-LE 367
Query: 740 PTINLHHVFALAVFEDH---------LFWTDWE----MKSIERCDKYTGKNCTSVVKNLV 786
P L+VF L W D M + + KY + V K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-----SLVEKQP- 421
Query: 787 HKPMDLRVYHPYRQTPLKDNPCENNGGCQGLCLLKPNGHRQ---------CACPDNFILE 837
K + + Y + +K EN + HR D+ I
Sbjct: 422 -KESTISIPSIYLELKVK---LEN----------EYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 838 S-DGKTCRH------NCSAGQ-------------FLCEKTMKCIPFWWKC-DTQDDCGD- 875
D H N + FL +K W +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 876 -KSDEH--DQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCL 928
+ D P++ L N I D + + L C YT L
Sbjct: 528 KFYKPYICDNDPKYERL-------------VNAILDFLPKIE---ENLICSKYTDL 567
Score = 30.2 bits (67), Expect = 5.8
Identities = 60/470 (12%), Positives = 118/470 (25%), Gaps = 185/470 (39%)
Query: 160 CSGDKFLCRNGNCILSRW----RCDGDN-------------DCNDGNDGLSSDEMNCDTE 202
C K C+ I W C+ D N + S +
Sbjct: 171 CLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 203 STCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSEC-NLFEFRCNSTGQ 261
S + + + C+ V + ++ N F C
Sbjct: 229 SIQAELRRLLKSKPYENCL---LVLLNVQN--------------AKAWNAFNLSCK---- 267
Query: 262 CIPITWVCDGVTDCID------KSDEHHSQDCLNVETCMEGYF-KCLNGRCLLENYYCDG 314
I +T VTD + S +HHS E + K L+ R
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRP--------- 315
Query: 315 ENDCGDNSDEP---------IVSMWKLVWKCL-NGRCLLENY---YCDGENDCGDNSDE- 360
D P +S+ + + + +G +N+ CD ++S
Sbjct: 316 -------QDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 361 -PPSCPKTDCDNSTHFEC-----QNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDL 414
P+ + F+ + + IP++LL D + + + + +
Sbjct: 366 LEPA------EYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVN-KLHKYSLV 417
Query: 415 CKHPSHFLCSNGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIG 474
K P E + + + +
Sbjct: 418 EKQP---------------------------KESTISI-------------P---SIYLE 434
Query: 475 YKCACRKGYQVHPE-----DKHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPGYALLSDK 529
K Y +H + D+++ + Y + +G + L + +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---------HHLKNIE 485
Query: 530 HGCKATSDVPPNLLFTNKYYIREVTQAGVMTIRIHNQTNAVGLDFDWVDN 579
H + T LF + LDF +++
Sbjct: 486 HPERMT-------LFRMVF-----------------------LDFRFLEQ 505
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 38.7 bits (89), Expect = 0.016
Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 21/229 (9%)
Query: 1112 VCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKC 1171
+ + D ++ + +C ++ + CW S +C C
Sbjct: 136 ILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHS---HCQKVC 192
Query: 1172 KPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRF--KCKNNKCIHRYA 1229
C +H C + C E + + + + C +AC +C Y
Sbjct: 193 PTI---CKSHGCTAEGLCCHSECLGNCSQPDDPTKC--VACRNFYLDGRCVETCPPPYYH 247
Query: 1230 MCDGIDNCGDNSDESH--CPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDE-EGC 1286
D + H C + + + N CI EC ++ C
Sbjct: 248 FQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIP---ECPSGYTMNSSNLLCTPC 304
Query: 1287 DSPLCKFRTCSQICIEKKISNTERTF---SCHCAEGYHMVHGKNKTSSC 1332
P K C + EK I + C G +++ + +
Sbjct: 305 LGPCPK--VCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLA 351
Score = 35.7 bits (81), Expect = 0.13
Identities = 30/225 (13%), Positives = 49/225 (21%), Gaps = 18/225 (8%)
Query: 28 MRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCSTCGNDTFHCDMGMCIHKALRC 87
+ + + + C +T N F H C
Sbjct: 137 LDSVEDNHIVLNKDDNEECGDICPGTAKG----KTNCPATVINGQFVERCWTHSHCQKVC 192
Query: 88 DVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHC------NFTSACIEE---SYICDGQND 138
+ E C + C +P C C+E Y
Sbjct: 193 PTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWR 252
Query: 139 CFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMN 198
C + S Q+ S + C ++ N CI C N N +
Sbjct: 253 CVNFSFCQDLHHKCKNSRRQGCHQ--YVIHNNKCIPE---CPSGYTMNSSNLLCTPCLGP 307
Query: 199 CDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTY 243
C + + V +G+ R N
Sbjct: 308 CPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAA 352
Score = 32.2 bits (72), Expect = 1.5
Identities = 26/203 (12%), Positives = 48/203 (23%), Gaps = 25/203 (12%)
Query: 828 CACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFH 887
++ + + + C + C S CP
Sbjct: 137 LDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPT-I 195
Query: 888 CLPGQFQCNNTKCLHPN--TICDGVNN------CGDMSDELHCVDYTCLNTQFKCKRDPA 939
C C H C ++ C + + CV+ TC + +
Sbjct: 196 CKSHGCTAEGLCC-HSECLGNCSQPDDPTKCVACRNFYLDGRCVE-TCPPPYYHFQDWRC 253
Query: 940 QGTGDHCISLLNRCDGH--PDCPL-----GEDEHDCMPKNCTANEFQCDVKCISL----- 987
C L ++C C + +C + C+
Sbjct: 254 V-NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVC 312
Query: 988 -ALVCDKVFDCLDRSDEPADCTS 1009
L +K D + + E CT
Sbjct: 313 HLLEGEKTIDSVTSAQELRGCTV 335
Score = 30.7 bits (68), Expect = 4.2
Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 13/130 (10%)
Query: 797 PYRQTPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEK 856
P +D C N CQ L K R+ C I C C +G +
Sbjct: 242 PPPYYHFQDWRCVNFSFCQDLH-HKCKNSRRQGCHQYVI---HNNKCIPECPSGYTMNSS 297
Query: 857 TMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPN---TICDGVNNC 913
+ C P C C + + + ++ + I G N
Sbjct: 298 NLLCTP----CLGP--CPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLA 351
Query: 914 GDMSDELHCV 923
++ L +
Sbjct: 352 AELEANLGLI 361
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 38.2 bits (89), Expect = 0.017
Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 14/137 (10%)
Query: 609 TSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGL------QEPRGIALNPA 662
G+ + G L D+ V + VL + G P I P
Sbjct: 128 YDAVGIAISPNGNGLILIDRS-SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPD 186
Query: 663 YGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNL----SWPNALTISYETNELFWGDAHED 718
+ + + N ++ NP+ I N + P + +S + + ++
Sbjct: 187 GNFAFVANLIGN---SIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTV 243
Query: 719 YIAVSDLNGENIKIIVS 735
+ + + + S
Sbjct: 244 DVFNFNQLSGTLSFVKS 260
Score = 37.1 bits (86), Expect = 0.039
Identities = 9/82 (10%), Positives = 18/82 (21%), Gaps = 2/82 (2%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLIN-KGLQEPRGIALNPAYGYMYW 668
+ N+ T+ + KV+ +G + + P +
Sbjct: 41 DFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT 100
Query: 669 TDWGQNAHIGKAKMDGSNPKVI 690
N K I
Sbjct: 101 VTGL-NHPFNMQSYSFLKNKFI 121
Score = 34.7 bits (80), Expect = 0.18
Identities = 15/143 (10%), Positives = 44/143 (30%), Gaps = 29/143 (20%)
Query: 608 ATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL-----INKGLQEPRGIALNPA 662
+PDG +V + ++I + L+ + + + + P I ++
Sbjct: 182 TFTPDGNFA-FVA------NLIGNSIGI--LETQNPENITLLNAVGTNNL-PGTIVVSRD 231
Query: 663 YGYMYWTDWGQNAHIGKAKMDGSNPKVII-----------SKNLSWPNALTISYETNELF 711
+Y + + + + + L N + ++ +LF
Sbjct: 232 GSTVYVLTESTV-DV--FNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288
Query: 712 WGDAHEDYIAVSDLNGENIKIIV 734
+ V ++G+ + +
Sbjct: 289 ISANISRELKVFTISGKVVGYVA 311
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 38.3 bits (89), Expect = 0.018
Identities = 25/148 (16%), Positives = 36/148 (24%), Gaps = 10/148 (6%)
Query: 953 CDGHPDCPLGEDEHDCMPKNCTANEFQCDVKCISLALVCDKVFDCLDRSDEPADCTSQTC 1012
C HP C PK N C +K + +S + + Q+C
Sbjct: 230 CTHHPGCLFFTFFSQEWPKESQRNL--CLLKTSE----SGLPSTRIKKSKALSGFSLQSC 283
Query: 1013 GPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCAD--PNLYTCDPTYFKCNNYKCIPG 1070
T ++D + C N C + C G
Sbjct: 284 RHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEA-CQKLCTNAVRCQFFTYTPAQASCNEG 342
Query: 1071 SWHCDYDDDCGDGSDEKNCTPRNCSESE 1098
C Y +GS K R
Sbjct: 343 KGKC-YLKLSSNGSPTKILHGRGGISGY 369
Score = 38.3 bits (89), Expect = 0.022
Identities = 15/159 (9%), Positives = 31/159 (19%), Gaps = 18/159 (11%)
Query: 144 DEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTES 203
D C +I P C F + R C G + +
Sbjct: 222 DAFVCGRICTHHP--GCLFFTFFSQEWPKESQRNLCLLKT-SESGLPSTRIKKSKALSGF 278
Query: 204 TCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE---------------NSTYCAHSE 248
+ ++ + + + + D + A +
Sbjct: 279 SLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQAS 338
Query: 249 CNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDC 287
CN + +C I +
Sbjct: 339 CNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
Score = 37.5 bits (87), Expect = 0.036
Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 1133 SKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC------TTKCKPNMFTCANHQCISL 1186
++ + + D C +C+ +T A C
Sbjct: 283 CRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEG 342
Query: 1187 NWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRY 1228
+C + + + +I G++ R +N+C +
Sbjct: 343 KGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKI 384
Score = 35.6 bits (82), Expect = 0.15
Identities = 18/154 (11%), Positives = 39/154 (25%), Gaps = 20/154 (12%)
Query: 1190 CDGEPDCSDNSDEIESICAGLACEPNRFKC--KNNKCIHRYAMCDGIDNCGDNSDESHCP 1247
C P C + + E R C K ++ C
Sbjct: 230 CTHHPGCLFFTFFSQEW----PKESQRNLCLLKTSESGLPSTRIKK-SKALSGFSLQSCR 284
Query: 1248 SIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQICIEKKISN 1307
+ + + D E C + C+ + +
Sbjct: 285 HSIPV-FCHSSFYHDTD-----FLGEELDIVAAKSHEACQ------KLCTNAVRCQFFTY 332
Query: 1308 TERTFSCHCAEGY-HMVHGKNKTSSCVANGKSAL 1340
T SC+ +G ++ N + + + +G+ +
Sbjct: 333 TPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGI 366
Score = 35.2 bits (81), Expect = 0.16
Identities = 17/135 (12%), Positives = 29/135 (21%), Gaps = 22/135 (16%)
Query: 801 TPLKDNPCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKC 860
T +K + + Q +C + + G+ L K
Sbjct: 267 TRIKKSKALSGFSLQ-------------SCRHSIPVFCHSSFYHDTDFLGEELDIVAAKS 313
Query: 861 IPFWWKCDTQDDCGDKSDEHD---QCPQFHCLPGQFQCNNTKCLHP-NTICDGVNNCGDM 916
C Q C + Q C G+ +C + T
Sbjct: 314 HEA---C--QKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISG 368
Query: 917 SDELHCVDYTCLNTQ 931
C T+
Sbjct: 369 YTLRLCKMDNECTTK 383
Score = 35.2 bits (81), Expect = 0.16
Identities = 15/159 (9%), Positives = 37/159 (23%), Gaps = 12/159 (7%)
Query: 67 TCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNP--IHCNFTS 124
C TF + C + + + L + I S
Sbjct: 235 GCLFFTFFSQEWPKESQRNLCLL-KTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHS 293
Query: 125 ACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDND 184
+ ++ + D + C + C+ + C+ ++ C+
Sbjct: 294 SFYHDTDFLGEELDIVAAKSHEACQK--------LCT-NAVRCQFFTYTPAQASCNEGKG 344
Query: 185 CNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISK 223
+ + + C + C +K
Sbjct: 345 KCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTK 383
Score = 34.8 bits (80), Expect = 0.26
Identities = 12/103 (11%), Positives = 21/103 (20%), Gaps = 8/103 (7%)
Query: 29 RDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCS-------TCGNDTFHCDMGMCI 81
+ CR ++ + D C C T+ C
Sbjct: 281 QSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCN 340
Query: 82 HKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTS 124
+C + S Y L + T+
Sbjct: 341 EGKGKCY-LKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTT 382
Score = 32.5 bits (74), Expect = 1.2
Identities = 19/171 (11%), Positives = 41/171 (23%), Gaps = 18/171 (10%)
Query: 242 TYC-AHSECNLFEFRCNSTGQCIPITWVCDGVTD-CIDKSDEHHSQDCLNVETCMEGYFK 299
C H C F F + +C T S L+ +
Sbjct: 228 RICTHHPGCLFFTF-FSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQS---- 282
Query: 300 CLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSD 359
C + + + + D + + + + C C C +
Sbjct: 283 CRHSIPVFCHSSFYHDTDFLGEELDIVAAKS-------HEAC---QKLCTNAVRCQFFTY 332
Query: 360 EPPSCPKTDCDNSTHFE-CQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECR 409
P + + + NG+ + G++ + N +
Sbjct: 333 TPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTK 383
Score = 32.5 bits (74), Expect = 1.3
Identities = 24/196 (12%), Positives = 35/196 (17%), Gaps = 50/196 (25%)
Query: 905 TICDGVNNCGDMSDELHC-----VDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDC 959
IC C + CL + + +S
Sbjct: 228 RICTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALS----------- 276
Query: 960 PLGEDEHDCMPKNCTANEFQCDVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRC 1019
G C + C + D + A C
Sbjct: 277 --GFSLQSCR----HSIPVFCHSSFYHDTDFLGEELDIVAAKSHEA-------------C 317
Query: 1020 DTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGS-WHCDYDD 1078
C V C P +C+ KC GS +
Sbjct: 318 QK--------LCTNAVRCQFFTYTPAQA------SCNEGKGKCYLKLSSNGSPTKILHGR 363
Query: 1079 DCGDGSDEKNCTPRNC 1094
G + C N
Sbjct: 364 GGISGYTLRLCKMDNE 379
Score = 31.7 bits (72), Expect = 2.1
Identities = 17/153 (11%), Positives = 31/153 (20%), Gaps = 30/153 (19%)
Query: 851 QFLCEKTMKCIPF------WWKCDTQDDCGDKSDEH----DQCPQ---------FHCLPG 891
+C C+ F W K ++ C K+ E + + C
Sbjct: 227 GRICTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHS 286
Query: 892 QFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDY-----TCLNTQFKCKRDPAQGTGDHC 946
++ H + C C + + C
Sbjct: 287 IPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKC 346
Query: 947 ISLLN------RCDGHPDCPLGEDEHDCMPKNC 973
L+ + G C N
Sbjct: 347 YLKLSSNGSPTKILHGRGGISGYTLRLCKMDNE 379
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 32.8 bits (76), Expect = 0.029
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 494 VDTNECLDRPCSH--YCRNTLGSYSCSCAPGY 523
VD ++C PC + C++ + SY C C G+
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGF 32
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 37.5 bits (87), Expect = 0.032
Identities = 20/139 (14%), Positives = 36/139 (25%), Gaps = 29/139 (20%)
Query: 1046 SCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGK 1105
D + TC Y + + S+ DD + RC
Sbjct: 23 QFRDYFIATCKQGYQLIEGNQVLH-SFTAVCQDDGT------------WHRAMPRCKIKD 69
Query: 1106 CIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHP----------AHCISSDLVCDGD 1155
C +P + NG+ ++ + N ++ ++ C P C
Sbjct: 70 CGQPRNLPNGD---FRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQ 126
Query: 1156 ---TDCWDGSDEANCTTKC 1171
+ G C C
Sbjct: 127 GIWKNEQKGEKIPRCLPVC 145
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 37.0 bits (85), Expect = 0.046
Identities = 28/189 (14%), Positives = 43/189 (22%), Gaps = 15/189 (7%)
Query: 206 KANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPI 265
K + F + CDG A F + G +
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDG-VQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415
Query: 266 TWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGR-------CLLENYYCDGENDC 318
T +C + C G +C G + E C
Sbjct: 416 TVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSC 475
Query: 319 GDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDCGDN----SDEPPSCPKTDCDNSTH 374
+++ I S C+ G+CL G+ G + C
Sbjct: 476 RKDNNSIICSGLG---DCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGR 532
Query: 375 FECQNGNCI 383
C G C
Sbjct: 533 GLCFCGKCR 541
Score = 32.4 bits (73), Expect = 1.5
Identities = 31/235 (13%), Positives = 56/235 (23%), Gaps = 18/235 (7%)
Query: 83 KALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDM 142
L+ D C + + P +C + T+ + + F
Sbjct: 354 DTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTD 413
Query: 143 SDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCD---GDNDCNDGNDGLSSDEMNC 199
+ + G RCD +C G SS E+
Sbjct: 414 IVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEG 473
Query: 200 DTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFE-FRCNS 258
+C+ +NN C C+ +C + C C + C
Sbjct: 474 ----SCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGG 529
Query: 259 TGQCIPITWVCD----------GVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNG 303
G+ + C + +C C +C +G
Sbjct: 530 PGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSG 584
Score = 31.2 bits (70), Expect = 3.0
Identities = 44/324 (13%), Positives = 74/324 (22%), Gaps = 40/324 (12%)
Query: 957 PDCPLGEDEHDCMPKNCTANEFQCDVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDY 1016
C G + +C + + + T
Sbjct: 362 SFCSNGVTHRNQPRGDCD-GVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 1017 IRCD--TGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWHC 1074
+C+ C G + + CD Y N G
Sbjct: 421 PQCECRCRDQSRDRSLCHGKGFL-----------ECGICRCDTGYIGKNCECQTQGRSSQ 469
Query: 1075 DYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSK 1134
+ + C ++ C+ C G+C+ G+ + + N
Sbjct: 470 ELEGSCRKDNNSIICSGLG------DCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYN 523
Query: 1135 NEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEP 1194
+ C P + C C G + + C + C G
Sbjct: 524 GQ-VCGGPGRGLCFCGKCR----CHPGFEGSACQCERTTEGCLNPRRVE------CSGRG 572
Query: 1195 DCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLCSE 1254
C N E S C+ C + C +C + P K CS
Sbjct: 573 RCRCNVCECHSGYQLPLCQECP-GCPSP--------CGKYISCAECLKFEKGPFGKNCSA 623
Query: 1255 ANFKCANGNCIKKELECDQYNDCG 1278
A N K C + + G
Sbjct: 624 ACPGLQLSNNPVKGRTCKERDSEG 647
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 36.7 bits (85), Expect = 0.046
Identities = 15/102 (14%), Positives = 22/102 (21%), Gaps = 8/102 (7%)
Query: 1044 PPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCAN 1103
T CI CD + + N T + R
Sbjct: 25 KAPLGALTALPRCGTGADQGKKVCIV-YHRCDGVTNTVTPEEVINTTGEG--IFDIRENA 81
Query: 1104 GKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHC 1145
+C VC C + S + P+ C
Sbjct: 82 NECESYLDVC-----CGLPEGGVLPTPSPTPPVVPVLKPSFC 118
Score = 31.7 bits (72), Expect = 1.7
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 7/101 (6%)
Query: 38 CDNNKCILSSHTCNNINDCGDGSDEADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDAS 97
CI H C+ + + + + + G + C C P+
Sbjct: 43 QGKKVCI-VYHRCDGVTNTVTPEEVINTTGEGIFDIRENANECESYLDVCCGLPEGGV-- 99
Query: 98 DEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQND 138
P + T + P C + + I N+
Sbjct: 100 ----LPTPSPTPPVVPVLKPSFCGIRNERGLDFKITGQTNE 136
Score = 31.3 bits (71), Expect = 2.1
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 4/85 (4%)
Query: 971 KNCTANEFQCDVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQ 1030
C Q CI CD V + + + + G IR + C
Sbjct: 35 PRCGTGADQGKKVCIVYHR-CDGVTNTVTPEEV---INTTGEGIFDIRENANECESYLDV 90
Query: 1031 CDGDVDCPNREDEPPSCADPNLYTC 1055
C G + P+ +
Sbjct: 91 CCGLPEGGVLPTPSPTPPVVPVLKP 115
>3i57_A Mucus binding protein; beta grAsp fold, cell WALL,
peptidoglycan-anchor, protein binding; 1.80A
{Lactobacillus reuteri}
Length = 185
Score = 34.8 bits (79), Expect = 0.10
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 4/116 (3%)
Query: 673 QNAHIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGENIKI 732
Q H+ +DG +++ +L TI Y T E + Y D K
Sbjct: 2 QKVHV--QYIDGETDQMLRQDDLDGYTDETIPYSTAEGIKKFEGDGYELFKDNFPAGEKF 59
Query: 733 IVSRRMDP--TINLHHVFALAVFEDHLFWTDWEMKSIERCDKYTGKNCTSVVKNLV 786
D T+ H K++ Y N T ++
Sbjct: 60 DNDDTNDQFYTVIFKHHRENVDPNHSSADGTKGTKTLTETVHYKYANGTKAAEDQT 115
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 35.5 bits (81), Expect = 0.12
Identities = 14/148 (9%), Positives = 41/148 (27%), Gaps = 8/148 (5%)
Query: 550 IREV-TQAGVMTIRIHNQTNAVGLDFDWVDNCLYWSDVTMHGSS-----IRRSCNNSQPE 603
R + + ++ + + + + + ++ + + R
Sbjct: 161 TRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVIT 220
Query: 604 LLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVL-INKGLQEPRGIALNPA 662
L + +G + LY+ + + L + I +P+
Sbjct: 221 ELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS 280
Query: 663 YGYMYWTDWGQNAHIGKAKMDGSNPKVI 690
Y Y Q+ I ++ D ++
Sbjct: 281 GNYAYIVVVNQHY-ILRSDYDWKTKRLT 307
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.4 bits (81), Expect = 0.15
Identities = 57/342 (16%), Positives = 101/342 (29%), Gaps = 64/342 (18%)
Query: 193 SSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLF 252
+E++ +TC NN V + + + + +
Sbjct: 362 LPEELSLSFNATCL-NNEVIPGLKSCMGLKIGDTVSFSIEAK----VRGCPQEKEKSFTI 416
Query: 253 EFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGR------CL 306
+ + +T+ CD C +++ + + T G +C G C
Sbjct: 417 KPVGFKDSLIVQVTFDCD--CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECS 474
Query: 307 LENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPSCPK 366
E+Y +++C +P+ S +CL G+C+ C +D G + + C
Sbjct: 475 EEDYRPSQQDECSPREGQPVCSQR---GECLCGQCV-----CH-SSDFGKITGKYCECDD 525
Query: 367 TDCDNSTHFECQN-GNCIPSVLLCN---GVNDCDDNSDEDMNHAECRSLKDLCKHPSHFL 422
C C G C LC+ C C + D C + L
Sbjct: 526 FSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYC-----------NCTTRTDTCMSSNGLL 574
Query: 423 CS-NGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRK 481
CS G C + C GD ++ + C EC C+K
Sbjct: 575 CSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACT-------FKKEC--------VECKK 619
Query: 482 GYQVHPEDKHLCVDTNECLDRPCSHYCRNTLGSYSCSCAPGY 523
+ + C+ YCR+ + S G
Sbjct: 620 FDR-----------GALHDENTCNRYCRDEIESVKELKDTGK 650
Score = 30.8 bits (69), Expect = 4.4
Identities = 22/180 (12%), Positives = 40/180 (22%), Gaps = 7/180 (3%)
Query: 83 KALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDGQNDCFDM 142
+ L + C + + ++ I E+ + F
Sbjct: 364 EELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKD 423
Query: 143 SDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTE 202
S D + + + C NGN C S ++ +
Sbjct: 424 SLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQ 483
Query: 203 STCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQC 262
C C C+ VC + + EC+ F C
Sbjct: 484 DECSPREGQPVCSQRGECLCGQCVCHSSDFGKI-------TGKYCECDDFSCVRYKGEMC 536
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 35.2 bits (80), Expect = 0.15
Identities = 30/227 (13%), Positives = 49/227 (21%), Gaps = 18/227 (7%)
Query: 26 CAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSDEADCSTCGNDTFHCDMGMCIHKAL 85
+ + + + C +T N F H
Sbjct: 135 RILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNC----PATVINGQFVERCWTHSHCQK 190
Query: 86 RCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHC------NFTSACIEE---SYICDGQ 136
C + E C + C +P C C+E Y
Sbjct: 191 VCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQD 250
Query: 137 NDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDE 196
C + S Q+ S + C ++ N CI C N N +
Sbjct: 251 WRCVNFSFCQDLHHKCKNSRRQGCHQ--YVIHNNKCIPE---CPSGYTMNSSNLLCTPCL 305
Query: 197 MNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTY 243
C + + V +G+ R N
Sbjct: 306 GPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAA 352
Score = 32.1 bits (72), Expect = 1.3
Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 17/230 (7%)
Query: 166 LCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSW 225
+ + D + +C D G + + NC +T V +C + C
Sbjct: 136 ILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCP--ATVINGQFVERCWTHSHC----- 188
Query: 226 VCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDG---VTDCIDKSDEH 282
C C HSEC + + +C+ V C
Sbjct: 189 QKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHF 248
Query: 283 HSQDCLNVETCMEGYFKCLNGRCLLENYYCDGEN----DCGDNSDEPIVSMWKLVWKCLN 338
C+N C + + KC N R + Y N +C ++
Sbjct: 249 QDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC---TPCL 305
Query: 339 GRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLL 388
G C + +GE + T + S + GN + + L
Sbjct: 306 GPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELE 355
Score = 30.2 bits (67), Expect = 5.3
Identities = 23/188 (12%), Positives = 50/188 (26%), Gaps = 15/188 (7%)
Query: 1037 CPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSE 1096
CP +C + +++ C +G + NCS+
Sbjct: 159 CPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQ 218
Query: 1097 SEFRCA---------NGKCIR---PHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAH 1144
+ +G+C+ P Y + C + S + + C + + H
Sbjct: 219 PDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYV 278
Query: 1145 CISSDLVCDGDTDCWDGSDEANCTT---KCKPNMFTCANHQCISLNWRCDGEPDCSDNSD 1201
++ + + + S CT C + I C+ +
Sbjct: 279 IHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Query: 1202 EIESICAG 1209
+ G
Sbjct: 339 SLIINIRG 346
Score = 29.4 bits (65), Expect = 8.6
Identities = 28/207 (13%), Positives = 49/207 (23%), Gaps = 13/207 (6%)
Query: 65 CSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTS 124
+ ++ + C P + N HC
Sbjct: 137 LDSVEDNHIVLNKDDNEECGDIC---PGTAKGKTNCPATVINGQFVER-CWTHSHCQKVC 192
Query: 125 ACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKF------LCRNGNCILSRWR 178
I +S+ C + C NC Q D + + C C WR
Sbjct: 193 PTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWR 252
Query: 179 CDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSD 238
C + C D + + + N + +C + T S + +C C
Sbjct: 253 CVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT---PCLGPCP 309
Query: 239 ENSTYCAHSECNLFEFRCNSTGQCIPI 265
+ + C I
Sbjct: 310 KVCHLLEGEKTIDSVTSAQELRGCTVI 336
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 34.5 bits (78), Expect = 0.18
Identities = 22/109 (20%), Positives = 29/109 (26%), Gaps = 7/109 (6%)
Query: 1086 EKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHC 1145
E+ C C E N C D D S N +C
Sbjct: 2 EEACELPECQE---DAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSD 58
Query: 1146 ISSDLVCDGDTDCWDGSDEANCTTKCKPNMFT-CANHQCISLNWRCDGE 1193
D C+ +DG D +C P C +H + CD
Sbjct: 59 GHCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFS---DGHCDQG 104
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 34.9 bits (80), Expect = 0.19
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 15/78 (19%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKG-------------LQEPRG 656
P + N Y D+ L ++ DG + +P G
Sbjct: 269 GPYLIYYFVDS-NFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNG 327
Query: 657 IALNPAYGYMYWTDWGQN 674
+ ++ G Y D +
Sbjct: 328 MTVDED-GNFYIVDGFKG 344
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 32.1 bits (73), Expect = 0.24
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 475 YKCACRKGYQVHPEDKHLCVDTNECLDRPCSHY--CRNTL--GSYSCSCAPGYA 524
C C G + V C + C + C+ L + C C G+A
Sbjct: 32 EYCWCNSGR-----AQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFA 80
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system;
HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 34.5 bits (78), Expect = 0.26
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 1113 CNGEN-DCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKC 1171
CN + + D C F C+ C++ L+C+GD DC D SDEANC
Sbjct: 46 CNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIY 105
Query: 1172 KPNMFTCANHQCISL 1186
K + I
Sbjct: 106 KKCQHEMDQYWGIGS 120
Score = 34.1 bits (77), Expect = 0.36
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 1077 DDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNE 1136
D + D + C + E G+C+ +CNG+NDC D SDE NC K +
Sbjct: 50 DKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQ 109
Query: 1137 FKCSHPAHC 1145
+
Sbjct: 110 HEMDQYWGI 118
Score = 32.2 bits (72), Expect = 1.4
Identities = 23/115 (20%), Positives = 31/115 (26%), Gaps = 3/115 (2%)
Query: 367 TDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNG 426
T CD + C+ + E + R + + G
Sbjct: 20 TTCDPCQKKRYRYAYL--LQPSQFHGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTG 77
Query: 427 LCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECIDLKIGYKCACRK 481
C+N L CN NDCGD SDE +C L G
Sbjct: 78 RCVNRRLLCNGDNDCGDQSDEANCR-RIYKKCQHEMDQYWGIGSLASGINLFTNS 131
Score = 32.2 bits (72), Expect = 1.4
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 227 CDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQD 286
C+ + D + S+ F C TG+C+ +C+G DC D+SDE + +
Sbjct: 46 CNF--SDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRR 103
Query: 287 CLNVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSD 323
+ L + G D
Sbjct: 104 IYKKCQHE--MDQYWGIGSLASGINLFTNSFEGPVLD 138
Score = 32.2 bits (72), Expect = 1.5
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 190 DGLSSDEMNCDTESTC--KANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE 239
+ + +C T C + F C C+++ +C+G DC D+SDE
Sbjct: 47 NFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDE 98
Score = 31.8 bits (71), Expect = 1.8
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 839 DGKTCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNN 897
+ CR F+C +T +C+ C+ +DCGD+SDE + + +
Sbjct: 58 TNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYW 116
Score = 31.4 bits (70), Expect = 2.6
Identities = 20/106 (18%), Positives = 29/106 (27%), Gaps = 4/106 (3%)
Query: 312 CDG----ENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKT 367
C+ DC N + GRC+ C+G+NDCGD SDE
Sbjct: 46 CNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIY 105
Query: 368 DCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKD 413
+ + S + + D C
Sbjct: 106 KKCQHEMDQYWGIGSLASGINLFTNSFEGPVLDHRYYAGGCSPHYI 151
Score = 31.0 bits (69), Expect = 3.1
Identities = 15/60 (25%), Positives = 20/60 (33%)
Query: 361 PPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSH 420
++ Q G C+ LLCNG NDC D SDE + +
Sbjct: 58 TNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWG 117
Score = 30.6 bits (68), Expect = 4.0
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 1224 CIHRYAMCDGIDNCGDNSDESHCPSIKLC-----SEANFKCANGNCIKKELECDQYNDCG 1278
+ + + G + + C + + C E G C+ + L C+ NDCG
Sbjct: 34 YLLQPSQFHGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCG 93
Query: 1279 DNSDEEGCDSPLCKFRTCSQIC 1300
D SDE C K +
Sbjct: 94 DQSDEANCRRIYKKCQHEMDQY 115
Score = 30.2 bits (67), Expect = 5.5
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 1003 EPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYF 1060
C SQ ++ TGRC+ + C+GD DC ++ DE + +
Sbjct: 58 TNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQY 115
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 34.1 bits (78), Expect = 0.26
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 493 CVDTNECLDR-----PCSHYCRNTLGSYSCSCAPGYALLSDKHGCKATS 536
VD +EC +R C HYC N +G Y CSC GY L +D C+
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVEC 166
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 34.6 bits (79), Expect = 0.27
Identities = 37/234 (15%), Positives = 66/234 (28%), Gaps = 5/234 (2%)
Query: 2 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHTCNNINDCGDGSD 61
C P N D+ +NCH ++ + +KC+ + DG
Sbjct: 99 CEPENPCKDKTHNCHKHAEC----IYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWP 154
Query: 62 EADCSTCGNDTFHCDMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCN 121
+ N T+HC C H D D D N + N
Sbjct: 155 NLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFN 214
Query: 122 FTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDG 181
A ++ + D ++C + + D + CS D N +
Sbjct: 215 PRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEG-DACSVDIDGDDVFNERDNCPYVYN 273
Query: 182 DNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTD 235
+ + DG+ NC + ++ ++ DG + D
Sbjct: 274 TDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQD 327
Score = 33.8 bits (77), Expect = 0.53
Identities = 45/359 (12%), Positives = 84/359 (23%), Gaps = 21/359 (5%)
Query: 116 NPIHCNFTSACIEESYICDGQNDCFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILS 175
N A E +C+ +N C D + + + K C+ G
Sbjct: 82 NQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTG----- 136
Query: 176 RWRCDGDNDCNDG-NDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCT 234
+ DG D DG + + C T +T + N D
Sbjct: 137 -YAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQED----FDKDGIGD 191
Query: 235 DRSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCM 294
D++ E + + N V D +C + N E
Sbjct: 192 ACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDA 251
Query: 295 EGYFKCLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDC 354
+ + N ++D V C L + + D
Sbjct: 252 CSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVG-------DHCDNCPLVHNPDQTDVDN 304
Query: 355 GDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDL 414
D+ + D D + + + + + D D D ++ +D
Sbjct: 305 DLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDN 364
Query: 415 CKHPSHFLCS---NGLCINETLTCNDINDCGDNSDEFSCFVNECNVSHGGQLCAHECID 470
C+ + + D ++ D D
Sbjct: 365 CRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQMVPLDPK 423
Score = 32.7 bits (74), Expect = 1.0
Identities = 34/271 (12%), Positives = 65/271 (23%), Gaps = 34/271 (12%)
Query: 180 DGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDE 239
G+ G + +++ C+ E+ CK + C + CI D Y C ++
Sbjct: 80 RGNQPVGVGLEAAKTEKQVCEPENPCKDKTH--NCHKHAECIYLGHFSDPMYKCECQTG- 136
Query: 240 NSTYCAHSECNLFEFRCNSTGQCIPITWVCDGVTDCIDKSDEHHSQDCLNVETCMEGYFK 299
+C +D + + C++
Sbjct: 137 ----------------------YAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCP 174
Query: 300 CLNGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNSD 359
L + + C D+ D V+ K + L + + + C +
Sbjct: 175 HLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPY 234
Query: 360 EPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPS 419
+N C +D + D
Sbjct: 235 VHNPAQIDTDNNGEGDACSV---------DIDGDDVFNERDNCPYVYNTDQRDTDGDGVG 285
Query: 420 HFLCSNGLCINETLTCNDINDCGDNSDEFSC 450
+ L N T D + GD D
Sbjct: 286 DHCDNCPLVHNPDQTDVDNDLVGDQCDNNED 316
Score = 31.5 bits (71), Expect = 2.6
Identities = 34/229 (14%), Positives = 51/229 (22%), Gaps = 22/229 (9%)
Query: 30 DCRPGY-----FKCDNNKCILSSHTCNNINDCGDGSD---------EADCSTCGNDTFHC 75
C P Y C N C D + + C
Sbjct: 74 PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCEC 133
Query: 76 DMGMCIHKALRCDVDPDCPDASDEMHCPMTNCTEKYPLMTNPIHCNFTSACIEESYICDG 135
G L C D D + TN T P N ++ I D
Sbjct: 134 QTGYAGD-GLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDA 192
Query: 136 QNDCFDM---SDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGL 192
+D D +DE++ Q+ + + D+ R NC + N+G
Sbjct: 193 CDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPY----VHNPAQIDTDNNGE 248
Query: 193 SSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENS 241
+ N G + N
Sbjct: 249 GDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNP 297
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 34.0 bits (77), Expect = 0.29
Identities = 24/117 (20%), Positives = 30/117 (25%), Gaps = 9/117 (7%)
Query: 1086 EKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHC 1145
E+ C C E N C D D S N +C
Sbjct: 2 EEACELPECQE---DAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSD 58
Query: 1146 ISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDE 1202
D C+ +DG D +C P + DG D NS E
Sbjct: 59 GHCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCK------DHFSDGHCDQGCNSAE 109
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 34.0 bits (78), Expect = 0.36
Identities = 12/90 (13%), Positives = 20/90 (22%), Gaps = 14/90 (15%)
Query: 1216 RFKCKNNKCIHRYAMCDGIDNCGDNSDESHCPSIKLC--------SEANFKCANGNCIKK 1267
C+ + R I +CG D + + + C K
Sbjct: 62 TAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMK 121
Query: 1268 E------LECDQYNDCGDNSDEEGCDSPLC 1291
E D + P+C
Sbjct: 122 VNDGKYVCEADGFWTSSKGEKSLPVCEPVC 151
Score = 33.6 bits (77), Expect = 0.44
Identities = 18/111 (16%), Positives = 26/111 (23%), Gaps = 11/111 (9%)
Query: 991 CDKVFDCLDRSDEPADCTSQTCGPD-YIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCAD 1049
C+ ++ L T+ C D C C D P+ E +
Sbjct: 45 CETGYELLQGHLPLKSFTA-VCQKDGSWDRPMPACSIVD--CGPPDDLPSGRVEYITGPG 101
Query: 1050 PNLYTCDPTYFKCNNYKCI----PGSWHCDYDD--DCGDGSDEKNCTPRNC 1094
Y Y C G + C+ D G C
Sbjct: 102 VTTYKAVIQY-SCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVC 151
Score = 32.0 bits (73), Expect = 1.5
Identities = 19/113 (16%), Positives = 28/113 (24%), Gaps = 29/113 (25%)
Query: 1049 DPNLYTCDPTYFKCNNYKCIP---------GSWH----------CDYDDDCGDGSDEKNC 1089
D C+ Y + + GSW C DD G E
Sbjct: 39 DSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYIT 98
Query: 1090 TPRN---CSESEFRCANGKCIRPH----YVC--NGENDCADHSDEIN-CNISC 1132
P + ++ C YVC +G + + C C
Sbjct: 99 GPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVC 151
Score = 30.5 bits (69), Expect = 3.9
Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 10/94 (10%)
Query: 371 NSTHFECQ-NGNCIPSVLLCNGVNDCDDNSDEDMNHAECRSLKDLCKHPS--HFLCSNGL 427
S CQ +G+ + C+ V DC D E + + + + + C
Sbjct: 59 KSFTAVCQKDGSWDRPMPACSIV-DCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETF 117
Query: 428 CINE------TLTCNDINDCGDNSDEFSCFVNEC 455
+ + C
Sbjct: 118 YTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVC 151
Score = 30.1 bits (68), Expect = 6.4
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 1256 NFKC-ANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQICIEKKISNTERTFSC 1314
C +G+ + C DCG D ++ T + K
Sbjct: 62 TAVCQKDGSWDRPMPAC-SIVDCGPPDDLPSGR---VEYITGPGVTTYKA------VIQY 111
Query: 1315 HCAEGYHMVHGKNKTSSCVANGK 1337
C E ++ + + C A+G
Sbjct: 112 SCEETFYTMKVNDGKYVCEADGF 134
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 33.6 bits (76), Expect = 0.43
Identities = 26/211 (12%), Positives = 58/211 (27%), Gaps = 35/211 (16%)
Query: 563 IHNQTNAVGLDFDWVDNCLYWSDVTMHGSSIRRSCNNSQPELL-----FPATSPDGLTVD 617
+ + L D + N +Y SD + + +P +P+ + +
Sbjct: 116 TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175
Query: 618 WVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQEPRGIALNPAYGYMYWTDWGQNA-- 675
G + DG + + GI L+ ++Y + +
Sbjct: 176 IDGVPVQIGQP----------DGTVIRPHLG-----VNGIVLDAENEWLYLSPMHSTSMY 220
Query: 676 -------HIGKAKMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLNGE 728
+ K+ + ++I + N ++ GD I V
Sbjct: 221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR 279
Query: 729 NIKIIVSRRMDPTINLHHVFALAVFEDHLFW 759
K++V+ L + D +
Sbjct: 280 AYKLLVTDE-----KLSWTDSFNFGSDGYLY 305
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Length = 501
Score = 33.8 bits (76), Expect = 0.45
Identities = 23/189 (12%), Positives = 41/189 (21%), Gaps = 12/189 (6%)
Query: 1047 CADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKC 1106
+L +C C N C + + C+ R +S C + +C
Sbjct: 155 DFQNHLGSCQKCDPSCPNGSCWGAG--EENCQKLTKIICAQQCSGRCRGKSPSDCCHNQC 212
Query: 1107 IRPHYVCNGEN--DCADHSDEINCNISCSKNEF--------KCSHPAHCISSDLVCDGDT 1156
+ C DE C +C +
Sbjct: 213 AAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCP 272
Query: 1157 DCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNR 1216
+ +D +C C + + + E + N
Sbjct: 273 RNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNI 332
Query: 1217 FKCKNNKCI 1225
KN I
Sbjct: 333 KHFKNCTSI 341
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 33.5 bits (76), Expect = 0.57
Identities = 37/201 (18%), Positives = 56/201 (27%), Gaps = 47/201 (23%)
Query: 1018 RCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYD 1077
C C T + C + + C+ F + +C CD
Sbjct: 232 NCQNECCDAATCKLKSGSQCGHGD------------CCEQCKFSKSGTECRASMSECDPA 279
Query: 1078 DDCGDGSDEKNCTP-------RNCSESEFRCANGKCIRPHYVC-----NGENDCADHSDE 1125
+ C S E C + C ++ C NG C ++ C + D E
Sbjct: 280 EHCTGQSSE--CPADVFHKNGQPCLDNYGYCYNGNCPIMYHQCYDLFGADVYEAEDSCFE 337
Query: 1126 INCNISCSKNEFKCSH-PAHCISSDLVCDGDTDCWDGSDEANCT---------------- 1168
N + K + C D+ C G C D S N
Sbjct: 338 RNQKGNYYGYCRKENGNKIPCAPEDVKC-GRLYCKDNSPGQNNPCKMFYSNEDEHKGMVL 396
Query: 1169 --TKCKPNMFTCANHQCISLN 1187
TKC C+N C+ +
Sbjct: 397 PGTKCADGKV-CSNGHCVDVA 416
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate
IMMU system, blood, membrane, cytolysin, immune SYST;
HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB:
4a5w_B* 4e0s_B*
Length = 913
Score = 33.3 bits (75), Expect = 0.75
Identities = 51/394 (12%), Positives = 93/394 (23%), Gaps = 35/394 (8%)
Query: 842 TCRHNCSAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCL 901
C + +C + G + +C C G + N K
Sbjct: 477 PCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLC-VCQSGTYGENCEKQS 535
Query: 902 HPNTICDGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPL 961
G S C + +C Q G C + + +
Sbjct: 536 PDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIM 595
Query: 962 GEDEHDCMP-----KNCTANEFQCDVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDY 1016
+ C+ K E + D C + + + +C +
Sbjct: 596 ENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGF 655
Query: 1017 --IRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFK---CNNYKCIPGS 1071
+ RC+P GDV+C E P + T ++ C G
Sbjct: 656 ETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGF 715
Query: 1072 WHCDYDD-DCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNI 1130
C S P + S + C + C +
Sbjct: 716 VVAGPSRYTCQGNSWT---PPISNSLT---CEKDTLTKLKGHCQLG--------QKQSGS 761
Query: 1131 SCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRC 1190
C + H V D D++ + + CK C N+Q +
Sbjct: 762 ECICMSPEEDCS-HHSEDLCVFDTDSNDY------FTSPACKFLAEKCLNNQQLHFLHIG 814
Query: 1191 DGEPDCSDNSDEIESICAGLACEPNRFKCKNNKC 1224
+ + + + + C + C
Sbjct: 815 SCQDGRQLEWGLERTRLSSNSTKKES--CGYDTC 846
Score = 33.3 bits (75), Expect = 0.76
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 348 CDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVLLCNGVNDCDDNSDE-DMNHA 406
C C + D F C +G CI L CNG NDC DNSDE D
Sbjct: 96 CTAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRT 155
Query: 407 ECRSLKDLCKHPSHFLCSNGLCI 429
+ + PS L NG
Sbjct: 156 KAVCTRKYNPIPSVQLMGNGFHF 178
Score = 31.8 bits (71), Expect = 1.9
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1089 CTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISS 1148
+++FRC +G+CI CNGENDC D+SDE + C + + C+ + I S
Sbjct: 113 KIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERD----CGRTKAVCTRKYNPIPS 168
Query: 1149 DLVCDGDTDCWDGSDEAN 1166
+ G
Sbjct: 169 VQLMGNGFHFLAGEPRGE 186
Score = 31.4 bits (70), Expect = 2.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 1007 CTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCD 1056
+ + RCD+GRCI + +C+G+ DC + DE + T
Sbjct: 113 KIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRK 162
Score = 30.2 bits (67), Expect = 5.6
Identities = 17/73 (23%), Positives = 26/73 (35%)
Query: 139 CFDMSDEQNCDQIKDVSPKMNCSGDKFLCRNGNCILSRWRCDGDNDCNDGNDGLSSDEMN 198
+ Q C K + +KF C +G CI + C+G+NDC D +D
Sbjct: 97 TAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTK 156
Query: 199 CDTESTCKANNNV 211
+V
Sbjct: 157 AVCTRKYNPIPSV 169
Score = 30.2 bits (67), Expect = 6.4
Identities = 50/358 (13%), Positives = 86/358 (24%), Gaps = 49/358 (13%)
Query: 848 SAGQFLCEKTMKCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTIC 907
Q C D+ + D + C N
Sbjct: 583 EKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGF--------- 633
Query: 908 DGVNNCGDMSDELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHD 967
+ N + V+ +C T F+ C+ G +C E
Sbjct: 634 --IRNEKQLYLVGEDVEISC-LTGFETVGYQYF----RCLPDGTWRQGDVECQRTECIKP 686
Query: 968 CMPKNCTANEF--------QCDVKCIS-LALVCDKVFDCLDRSDEPADCTSQTCGPDYIR 1018
+ + T F ++ C + + C S P S TC D +
Sbjct: 687 VVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLT 746
Query: 1019 CDTGRCIPKTWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDD 1078
G C Q + C + E D + ++ D F ++ +
Sbjct: 747 KLKGHCQLGQKQSGSECICMSPE------EDCSHHSEDLCVFDTDSNDYFTSPACKFLAE 800
Query: 1079 DCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFK 1138
C + +C + + S SC +
Sbjct: 801 KCLNNQQLHFLHIGSCQDG-------------RQLEWGLERTRLSSNSTKKESCGYDT-- 845
Query: 1139 CSHPAHCI--SSDLVCDGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEP 1194
C C +S VC C+ G ++ C K + + C RC
Sbjct: 846 CYDWEKCSASTSKCVCLLPPQCFKGGNQLYC-VKMGSSTSEKTLNICEVGTIRCANRK 902
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag
of basic residues, EGF-like domain, glycoprotein,
membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Length = 510
Score = 32.8 bits (74), Expect = 0.83
Identities = 29/161 (18%), Positives = 42/161 (26%), Gaps = 18/161 (11%)
Query: 1153 DGDTDCWDGSDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESIC----- 1207
G C N F +C C +C E C
Sbjct: 196 SGGGACLFNKPSKLLDPPECGNGFIETGEEC-----DCGTPAECVLEGAECCKKCTLTQD 250
Query: 1208 ----AGLACEPNRFKCKNNKCIHRYAMCDGIDNCGDNSDE----SHCPSIKLCSEANFKC 1259
GL C+ +F+ C CD + C NS + H C C
Sbjct: 251 SQCSDGLCCKKCKFQPMGTVCREAVNDCDIRETCSGNSSQCAPNIHKMDGYSCDGVQGIC 310
Query: 1260 ANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQIC 1300
G C ++ +C + ++ C L T C
Sbjct: 311 FGGRCKTRDRQCKYIWGQKVTASDKYCYEKLNIEGTEKGNC 351
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 32.6 bits (73), Expect = 0.98
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 8/157 (5%)
Query: 1204 ESICAGLACEPNRFKCKNNKCIHRYAM--CDGIDNCGDNSDESHCPSIKLCSEANFKCAN 1261
ES+ AG R +C + C+ + +N C + K CS+ C
Sbjct: 14 ESLSAG---SVQRARCASR-CLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKE 69
Query: 1262 GNCIKKELECDQYNDCGDNSDEEGC-DSPLCKFRTCSQICIEKKISNTERTFSCHCAEGY 1320
++K +C + + C S + F+ C E
Sbjct: 70 SGDLRKH-QCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESC 128
Query: 1321 HMVHGKNKTSSCVANGKSALLLIAHTTLKVLDPYASR 1357
+ + + C +NG + T K + +
Sbjct: 129 EVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRK 165
Score = 32.2 bits (72), Expect = 1.7
Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 13/149 (8%)
Query: 1037 CPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSE 1096
R DE S C +C + + S + +GS + CS+
Sbjct: 8 AARRLDESLSAGSVQRARCA---SRCLSLQITRISAFFQHFQ--NNGSLVWCQNHKQCSK 62
Query: 1097 SEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSH-PAHCISSDLVCDGD 1155
C +R H C + C SC ++ C + +
Sbjct: 63 CLEPCKESGDLRKHQ-CQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFA 121
Query: 1156 TDCWDGSDEANCTTKCK-PNMFTCANHQC 1183
C + +C + + C ++ C
Sbjct: 122 AACVE-----SCEVDNECSGVKKCCSNGC 145
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 32.0 bits (73), Expect = 1.3
Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 22/170 (12%)
Query: 576 WVD--NCLYWSDVTMHGSSI-RRSCNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDT 632
W + L WSD + G + + + LL +G VD R L C+ G
Sbjct: 52 WWEAQRTLVWSD--LVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQR-LVHCEHGRRA 108
Query: 633 IEVAKLDGRFRKVL----------INKGLQEPRG--IALNPAYGYMYWTDWGQNAHIGKA 680
I + DG+ ++ N + G +P +G +
Sbjct: 109 ITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168
Query: 681 ----KMDGSNPKVIISKNLSWPNALTISYETNELFWGDAHEDYIAVSDLN 726
++ + +L PN L S + L+ E ++
Sbjct: 169 HSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT 218
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 31.9 bits (72), Expect = 1.5
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 1177 TCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDN 1236
TC + C + + C++ GL C+ RFK +C CD D
Sbjct: 241 TCRDPCCDATTCKLRQGAQCAE----------GLCCDQCRFKGAGTECRAAKDECDMADV 290
Query: 1237 CGDNSDESHCPSI-----KLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
C S + C + C N C NG C +C G ++ C
Sbjct: 291 CTGRS--AECTDRFQRNGQPCKNNNGYCYNGKCPIMADQCIALFGPGATVSQDAC 343
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 31.6 bits (72), Expect = 2.1
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLD---GRFRKVLINKGLQEPRGIALNPAYGYM 666
+PDG R+LY CD+ I V + K +PRG ++ + Y+
Sbjct: 239 TPDG-------RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL 291
Query: 667 Y 667
Sbjct: 292 I 292
Score = 30.4 bits (69), Expect = 4.4
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 13/66 (19%)
Query: 608 ATSPDGLTVDWVGRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQE------PRGIALNP 661
SPD R L+ D I + + V + PR + +P
Sbjct: 135 NISPDN-------RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 187
Query: 662 AYGYMY 667
Y Y
Sbjct: 188 NEQYAY 193
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 31.5 bits (71), Expect = 2.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 493 CVDTNECLDRP-----CSHYCRNTLGSYSCSCAPGYALLSDKHGCK 533
VD +EC +R C HYC N +G Y CSC GY L +D C+
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 31.1 bits (70), Expect = 2.4
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 18/116 (15%)
Query: 1177 TCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYAMCDGIDN 1236
C + C + + E C CE +FK +C CD +
Sbjct: 238 DCQSACCNATTCKLQHEAQCDS----------EECCEKCKFKGARAECRAAKDDCDLPEL 287
Query: 1237 CGDNSDESHCPSI------KLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGC 1286
C S + CP+ C C NG C +C G + C
Sbjct: 288 CTGQS--AECPTDVFQRNGLPCQNNQGYCYNGKCPIMTNQCIALRGPGVKVSRDSC 341
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 30.6 bits (68), Expect = 3.0
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 2/70 (2%)
Query: 1028 TWQCDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNN--YKCIPGSWHCDYDDDCGDGSD 1085
Q +D P + L + ++C D G D
Sbjct: 145 GHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGID 204
Query: 1086 EKNCTPRNCS 1095
++ +
Sbjct: 205 VRDAPLKEIK 214
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 31.1 bits (69), Expect = 3.1
Identities = 35/303 (11%), Positives = 69/303 (22%), Gaps = 22/303 (7%)
Query: 208 NNNVFQCDNNKTCISKSWVCDGTYDCTDRSDENSTYCAHSECNLFEFRCNSTGQCIPITW 267
N + S C ++ + + +E + +C
Sbjct: 248 PTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEG 307
Query: 268 VCDGVTDCIDKSDEHHSQDCLNVETCMEGYFKCLNGRCLLENYYCDGENDCGDNSDEPIV 327
C V + I + S ++G + G++ +P
Sbjct: 308 PCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQE 367
Query: 328 SMWKLVWKCLNGRCLLENYYCDGENDCGDNSDEPPSCPKTDCDNSTHFECQNGNCIPSVL 387
K + G L++ + +N T I
Sbjct: 368 LDILKTVKEITGFLLIQAW----------------------PENRTDLHAFENLEIIRGR 405
Query: 388 LCNGVNDCDDNSDEDMNHAECRSLKDLCKHPSHFLCSNGLCINETLTCNDINDCGDNSDE 447
++ RSLK++ + LC T+ + +
Sbjct: 406 TKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTK 465
Query: 448 FSCFVNECNVSHGGQLCAHECIDLKIGYKCACRKGYQVHPEDKHLCVDTNECLDRPCSHY 507
E GQ+C C + CVD + L+ +
Sbjct: 466 IISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREF 525
Query: 508 CRN 510
N
Sbjct: 526 VEN 528
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin;
1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A
Length = 221
Score = 30.6 bits (69), Expect = 3.2
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 1252 CSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSPLCKFRTCSQIC 1300
C + C NG C ++ +C + C K C C
Sbjct: 167 CGDCPSACDNGLCTNPCTIYNKLTNCDSLLKQSSCQDDWIK-SNCPASC 214
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG
NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.8 bits (69), Expect = 3.3
Identities = 37/289 (12%), Positives = 63/289 (21%), Gaps = 31/289 (10%)
Query: 1061 KCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCIRPHYVCNGENDCA 1120
N H D + P++ R G + C
Sbjct: 134 YKNGSFIHSVPRHEVPDILEVHLP---HAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCE 190
Query: 1121 DHSDEINCNISCSKNEFKCSHPAHCISSDLVC---------DGDTDCWDGSDEANCTTKC 1171
CN C+ C + C C + C + C +C
Sbjct: 191 AQKWGPECNHLCT----ACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERC 246
Query: 1172 KPNMFTCANHQCISLNWRCDGEP--DCSDNSDEIESICAGLACEPNRFKCKNNKCIHRYA 1229
+ C+ + C ++ G C+ R C N + R+
Sbjct: 247 SGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCK-LRCSCNNGEMCDRFQ 305
Query: 1230 MCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQYNDCGDNSDEEGCDSP 1289
C C C + + I G P
Sbjct: 306 GCL----CSPGWQGLQCEREGIPRMTPKIVDLPDHI-----EVNSGKFNPICKASGWPLP 356
Query: 1290 LCKFRTCSQ---ICIEKKISNTERTFSCHCAEGYHMVHGKNKTSSCVAN 1335
+ T + + K N FS + ++ + C N
Sbjct: 357 TNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVN 405
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 31.2 bits (69), Expect = 3.3
Identities = 19/115 (16%), Positives = 27/115 (23%), Gaps = 4/115 (3%)
Query: 1102 ANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDG 1161
+ R + D N I + CS C+ VCD + W G
Sbjct: 505 TRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDM-CSGHGRCVQGSCVCD---EQWGG 560
Query: 1162 SDEANCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNR 1216
T + N + NW S + S A
Sbjct: 561 LYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCS 615
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 30.5 bits (68), Expect = 4.0
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 302 NGRCLLENYYCDGENDCGDNSDEPIVSMWKLVWKCLNGRCLLENYYCDGENDCGDNS--- 358
+G C + YY DG + G+ +++ ++ K+ + + R L + DGE G +
Sbjct: 11 HGVCWI--YYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLM 68
Query: 359 ---------DEPPSCPKTDCDNSTHFECQNGNCIP 384
+ P D ST +P
Sbjct: 69 STEEGRPHFELMPGNSVYHFDKSTSSCISTNALLP 103
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 30.1 bits (68), Expect = 5.6
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 610 SPDGLTVDWVGRNLYWCDKGLDTIEVAKLD--GRFRKV-LINKGLQEPRGIALNPAYGYM 666
S DG LY ++G +T+ V + G + I+ PR L+P ++
Sbjct: 248 SHDG-------HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV 300
Query: 667 Y 667
Sbjct: 301 V 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 29.8 bits (66), Expect = 6.8
Identities = 13/129 (10%), Positives = 39/129 (30%), Gaps = 6/129 (4%)
Query: 588 MHGSSIRRSCNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDTIEVAKL--DGRFRKV 645
+ S + N + +G+ + G+ +Y + I V + + +
Sbjct: 200 LAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL 259
Query: 646 LINKGLQEPRGIALNPAYGYMYWTDWGQNAHIGKAKMDGSNPKVIISKNLSWPNALTISY 705
+ I+++P G ++ I + + L + L+
Sbjct: 260 RVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEV----LRIQDILSEEP 315
Query: 706 ETNELFWGD 714
+ ++ +
Sbjct: 316 KVTVVYAEN 324
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.0 bits (66), Expect = 6.9
Identities = 19/96 (19%), Positives = 26/96 (27%), Gaps = 15/96 (15%)
Query: 176 RWRCDGDNDCNDGNDGLSSDEMNCDTESTCKANNNVFQCDNNKTCISKSWVCDGTYDCTD 235
RW + + N GL C C + CIS CD Y
Sbjct: 169 RWIQESSSQKNVPPFGLD----GVYISEPC-----PSYCSGHGDCISGVCFCDLGYTAAQ 219
Query: 236 RSDENSTYCAHSECNLFEFRCNSTGQCIPITWVCDG 271
C + N E G+ P+ + G
Sbjct: 220 ------GTCVSNTPNHSEMFDRFEGKLSPLWYKITG 249
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 30.0 bits (66), Expect = 7.0
Identities = 40/376 (10%), Positives = 79/376 (21%), Gaps = 14/376 (3%)
Query: 810 NNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQFLCEKTMKCIPFWWKCDT 869
+ C +G CP F+ HN +A +K P +
Sbjct: 218 KDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVV-- 275
Query: 870 QDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSDELHCVDYTCLN 929
C + + D D + ++
Sbjct: 276 ----------DSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVD 325
Query: 930 TQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEFQ--CDVKCISL 987
+ K + I L+ G P + + + + T E +++
Sbjct: 326 SSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPP 385
Query: 988 ALVCDKVFDCLDRSDEPADCTSQTCGPDYIRCDTGRCIPKTWQCDGDVDCPNREDEPPSC 1047
+ VF L + + + T +
Sbjct: 386 NMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYY 445
Query: 1048 ADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGKCI 1107
N T T + + + +C + + + + C
Sbjct: 446 HTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRG 505
Query: 1108 RPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEANC 1167
R D E + + + D T C D NC
Sbjct: 506 RICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNC 565
Query: 1168 TTKCKPNMFTCANHQC 1183
KC + +
Sbjct: 566 VEKCPDGLQGANSFIF 581
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 29.6 bits (67), Expect = 7.2
Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 30/176 (17%)
Query: 576 WV--DNCLYWSDVTMHGSSI-RRSCNNSQPELLFPATSPDGLTVDWVGRNLYWCDKGLDT 632
+V + + +SD + + S + + P+ +G ++ G L C GL
Sbjct: 35 YVPARSAVIFSD--VRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGH-LIACSHGLRR 91
Query: 633 IEVAKLDGRFRKVLINKGLQEPRGIALN--------------PAYGYMYWTDWGQNAHIG 678
+E + G + + + + + + N P YG + G +
Sbjct: 92 LERQREPGGEWESIADS-FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE-GYGGEME 149
Query: 679 KA-----KMDGSNPKVIISKNLSWPNALTIS-YETNELFWGDAHEDYIAVSDLNGE 728
++ ++ PN L L D ++ LN
Sbjct: 150 LPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGN--LLVSDTGDNATHRYCLNAR 203
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed
beta-propeller, structural genomics, joint center F
structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides
fragilis} PDB: 3fgb_A
Length = 361
Score = 29.8 bits (67), Expect = 7.5
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 13/61 (21%)
Query: 620 GRNLYWCDKGLDTIEVAKLDGRFRKVLINKGLQE-------------PRGIALNPAYGYM 666
G+ L D G D I ++ K L + PR + N +
Sbjct: 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA 225
Query: 667 Y 667
Y
Sbjct: 226 Y 226
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor,
immunity, signaling transferase; HET: NAG NDG; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3p11_A*
Length = 621
Score = 29.6 bits (65), Expect = 8.4
Identities = 42/392 (10%), Positives = 74/392 (18%), Gaps = 18/392 (4%)
Query: 807 PCENNGGCQGLCLLKPNGHRQCACPDNFILESDGKTCRHNCSAGQF--------LCEKTM 858
G C C + + + C C+ G C
Sbjct: 172 KGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFN 231
Query: 859 KCIPFWWKCDTQDDCGDKSDEHDQCPQFHCLPGQFQCNNTKCLHPNTICDGVNNCGDMSD 918
+C + + + P G C H + D
Sbjct: 232 DSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCV--ASCPHNFVVDQTSCVRACPPD 289
Query: 919 ELHCVDYTCLNTQFKCKRDPAQGTGDHCISLLNRCDGHPDCPLGEDEHDCMPKNCTANEF 978
++ + P G S D +
Sbjct: 290 KMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGL 349
Query: 979 QCDVKCISLALVCDKVFDCLDRSDEPADCTSQTCGPDY--------IRCDTGRCIPKTWQ 1030
D AL +K+ + Q+ P + GR +
Sbjct: 350 NGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGF 409
Query: 1031 CDGDVDCPNREDEPPSCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCT 1090
+ N +W + D K+
Sbjct: 410 SLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNR 469
Query: 1091 PRNCSESEFRCANGKCIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDL 1150
PR +E + + C G C + + + F P
Sbjct: 470 PRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAE 529
Query: 1151 VCDGDTDCWDGSDEANCTTKCKPNMFTCANHQ 1182
+C A C CA+ +
Sbjct: 530 CFSCHPECQPMEGTATCNGSGSDTCAQCAHFR 561
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 29.4 bits (65), Expect = 9.2
Identities = 27/233 (11%), Positives = 56/233 (24%), Gaps = 31/233 (13%)
Query: 1046 SCADPNLYTCDPTYFKCNNYKCIPGSWHCDYDDDCGDGSDEKNCTPRNCSESEFRCANGK 1105
S D +L + K EK + + +
Sbjct: 123 STVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQ 182
Query: 1106 CIRPHYVCNGENDCADHSDEINCNISCSKNEFKCSHPAHCISSDLVCDGDTDCWDGSDEA 1165
+ P + C SCS + C++ C
Sbjct: 183 KMCPSTCGKRACTENNECCHPECLGSCS----APDNDTACVA----------CRHYYYAG 228
Query: 1166 NCTTKCKPNMFTCANHQCISLNWRCDGEPDCSDNSDEIESICAGLACEPNRFKCKNNKCI 1225
C C PN + +C+ + D +I + + + F + +C+
Sbjct: 229 VCVPACPPNTYRFEGWRCV--------------DRDFCANILSAESSDSEGFVIHDGECM 274
Query: 1226 HR---YAMCDGIDNCGDNSDESHCPSIKLCSEANFKCANGNCIKKELECDQYN 1275
+ +G + E CP + + + + C +
Sbjct: 275 QECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFK 327
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.475
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,985,512
Number of extensions: 1385062
Number of successful extensions: 7902
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4448
Number of HSP's successfully gapped: 1463
Length of query: 1416
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1310
Effective length of database: 3,742,167
Effective search space: 4902238770
Effective search space used: 4902238770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.5 bits)