RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6575
(351 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 168 bits (429), Expect = 2e-48
Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 52/258 (20%)
Query: 64 DIEYKNTKTKSFLELLLEIDHAAD-DKLTDAEILPELTTLFFAALDTTATANSTILLLLA 122
++ + FL+ LL D KLTD E+ + LFFA DTT++ S L LA
Sbjct: 230 TLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELA 289
Query: 123 MYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPD 182
+PEV +K + +EID V G
Sbjct: 290 KHPEVQEK---------------------------------------LREEIDEVIG--- 307
Query: 183 EDDGRPPTPADLHSMNYLECVIKETARLYPPAPI-VFRQVDEEVPLGRHVLPAGASIMLT 241
D R PT DL +M YL+ VIKET RL+P P+ + R+V ++ + +++P G +++
Sbjct: 308 --DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVN 365
Query: 242 IAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQ 301
+ +HR+ + NP +F PERF + + R +AF+PF AGPRNC+G++ A ++
Sbjct: 366 LYALHRDPEVFPNPEEFDPERFLDEN------GKFRKSFAFLPFGAGPRNCLGERLARME 419
Query: 302 MKTVISTILRQYHLSPSP 319
MK ++T+L+ + + P
Sbjct: 420 MKLFLATLLQNFEVELPP 437
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 119 bits (300), Expect = 2e-30
Identities = 67/270 (24%), Positives = 103/270 (38%), Gaps = 80/270 (29%)
Query: 75 FLELLLEIDHAADDKLTDAEILPELTTLFFAALDTTATANSTILLLLAMYPEVLQKIDGL 134
L LLL + +L+D EI EL TL A +TTA
Sbjct: 217 LLSLLLSAEDDGGGRLSDDEIRDELITLLVAGHETTA----------------------- 253
Query: 135 YRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADL 194
+ ++ AL L+ + DQ + E D
Sbjct: 254 ---------NALAWAL-------YALLRHPDQLAKLRAEPDRP----------------- 280
Query: 195 HSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVN 254
LE V++ET RLYPP P+ R E+V LG + +PAG ++L+I +R+ + +
Sbjct: 281 ----LLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPD 336
Query: 255 PIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYH 314
P +F PERF A +PF GP C+G A L++K ++ +LR++
Sbjct: 337 PDEFDPERF---------------NNAHLPFGGGPHRCLGAALARLELKVALAELLRRFP 381
Query: 315 L-----SPSPRFQTIADIDKRIRMDITLRM 339
L P + R+ + R
Sbjct: 382 LLLLAEPPPLVRRPTLVPRGGERLPVRRRR 411
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 113 bits (284), Expect = 6e-28
Identities = 78/304 (25%), Positives = 130/304 (42%), Gaps = 74/304 (24%)
Query: 44 DDKNKDLKINSENGNEEEFLDIEYKNTKTKSFLELLLEIDHAADDKLTDAEILPELTTLF 103
D + ++ E EE++ N S L LL A+ ++++ ++ +L ++
Sbjct: 237 DKCKEIVEAEGEVIEGEEYV-----NDSDPSVLRFLL----ASREEVSSVQLRDDLLSML 287
Query: 104 FAALDTTATANSTILLLLAMYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAY 163
A +TT + + L LL+ PE L+K
Sbjct: 288 VAGHETTGSVLTWTLYLLSKNPEALRK--------------------------------- 314
Query: 164 TDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVFR--QV 221
+E+D V G RPPT D+ + YL I E+ RLYP P++ R QV
Sbjct: 315 ------AQEELDRVLQG------RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQV 362
Query: 222 DEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYA 281
++ +P G + + AG IM+++ IHR+ W +F+PERF D V + +
Sbjct: 363 EDVLP-GGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPN---ETNTDFR 418
Query: 282 FIPFSAGPRNCIGQKYAMLQMKTVISTILRQYHLSPSPRFQTIADIDKRIRMDITLRMED 341
+IPFS GPR C+G ++A+L+ ++ +L++ L P D + M
Sbjct: 419 YIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVP--------------DQDIVMTT 464
Query: 342 GAVI 345
GA I
Sbjct: 465 GATI 468
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 111 bits (279), Expect = 4e-27
Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 56/244 (22%)
Query: 78 LLLEIDHAADDKLT-DAE-ILPELTTLFFAALDTTATANSTILLLLAMYPEVLQKIDGLY 135
LL E++ + + + I+ E T FFA +TTA + L+LLA P
Sbjct: 298 LLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPT--------- 348
Query: 136 RPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLH 195
+D V E+ V GG P+ L
Sbjct: 349 ------------------------------WQDKVRAEVAEVCGG------ETPSVDHLS 372
Query: 196 SMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYW-VN 254
+ L VI E+ RLYPPA ++ R E++ LG +P G SI + + IH ++ W +
Sbjct: 373 KLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKD 432
Query: 255 PIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYH 314
+F P+RF H FIPF+AGPRNCIGQ +AM++ K +++ ++ ++
Sbjct: 433 ANEFNPDRFAGRPFAPGRH--------FIPFAAGPRNCIGQAFAMMEAKIILAMLISKFS 484
Query: 315 LSPS 318
+ S
Sbjct: 485 FTIS 488
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 97.9 bits (244), Expect = 1e-22
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 67/257 (26%)
Query: 67 YKNTKTKSFLELLLE--IDHAADDKLTDAEILPELTTLFFAALDTTATANSTILLLLAMY 124
+ L+LL++ + DD L+ IL + F A +DT+AT+ ++L+L Y
Sbjct: 257 IDPEVPRDLLDLLIKEYGTNTDDDILS---ILATILDFFLAGVDTSATSLEWMVLMLCNY 313
Query: 125 PEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDE- 183
PE+ ++ +EI S G ++
Sbjct: 314 PEI---------------------------------------QEKAYNEIKSTVNGRNKV 334
Query: 184 --DDGRPPTPADLHSMNYLECVIKETARLYPPAPI-VFRQVDEEVPLGR-HVLPAGASIM 239
D R TP Y +IKET R P +P + R ++ +G H +P A I+
Sbjct: 335 LLSD-RQSTP-------YTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQIL 386
Query: 240 LTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAM 299
+ + RN+ Y+ NP QF P RF +S AF+PFS GPRNC+GQ++A
Sbjct: 387 INYYSLGRNEKYFENPEQFDPSRFLNPDS----------NDAFMPFSIGPRNCVGQQFAQ 436
Query: 300 LQMKTVISTILRQYHLS 316
++ S I+ + L
Sbjct: 437 DELYLAFSNIILNFKLK 453
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 95.3 bits (237), Expect = 1e-21
Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 47/225 (20%)
Query: 87 DDKLTDAEILPELTTLFFAALDTTATANSTILLLLAMYPEVLQKIDGLYRPERYSNISTI 146
++TD EI L LF A DTT++ + L +P++L+K
Sbjct: 290 GGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKK---------------- 333
Query: 147 SSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKE 206
AQ +E+D+V G R + +DL + YL+ VIKE
Sbjct: 334 --------AQ---------------EELDAVVG-----RDRLVSESDLPQLTYLQAVIKE 365
Query: 207 TARLYPPAPIVF-RQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHP 265
T RL+P P+ R EE + + +P GA++++ + I R+ W +P++F P+RF P
Sbjct: 366 TFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLP 425
Query: 266 DESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTIL 310
+ ++ + IPF AG R C G + L+M T+++ L
Sbjct: 426 GGEHAGVDVKGSD-FELIPFGAGRRICAGLSWG-LRMVTLLTATL 468
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 94.6 bits (235), Expect = 3e-21
Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 54/263 (20%)
Query: 59 EEEFLDI--EYKNTKTKSFLELLLEIDHAADDKLTDAEILPELTTLFFAALDTTATANST 116
EEE L EY N + S L LL A+ D ++ ++ +L T+ A +T+A +
Sbjct: 358 EEEELQFHEEYMNERDPSILHFLL----ASGDDVSSKQLRDDLMTMLIAGHETSAAVLTW 413
Query: 117 ILLLLAMYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDS 176
LL+ P V+ K+ +E+DS
Sbjct: 414 TFYLLSKEPSVVAKLQ---------------------------------------EEVDS 434
Query: 177 VFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGA 236
V G R PT D+ + Y VI E+ RLYP P++ R+ E LG + + G
Sbjct: 435 VLGD------RFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGE 488
Query: 237 SIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQK 296
I +++ +HR+ +W + +F PER+ P + + + Q ++++PF GPR C+G
Sbjct: 489 DIFISVWNLHRSPKHWDDAEKFNPERW-PLDGPNPNETNQN--FSYLPFGGGPRKCVGDM 545
Query: 297 YAMLQMKTVISTILRQYHLSPSP 319
+A + + ++R++ +P
Sbjct: 546 FASFENVVATAMLVRRFDFQLAP 568
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 87.5 bits (217), Expect = 5e-19
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 142 NISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLE 201
N++ I + L+ + L+ + + + + DE+D+V G G T D H + YL+
Sbjct: 302 NVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLG-----PGNQVTEPDTHKLPYLQ 356
Query: 202 CVIKETARLYPPAPIVFRQVD-EEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIP 260
V+KET RL+ P++ ++ E+ LG + +PA + I++ + N W NP +F P
Sbjct: 357 AVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRP 416
Query: 261 ERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYHLSPSP 319
ERF +E+ ++ + F+PF G R+C G A+ + V+ +++ + L P P
Sbjct: 417 ERFLEEEAKVEANGND---FRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPP 472
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 86.3 bits (214), Expect = 1e-18
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 165 DQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIV-FRQVDE 223
D+++ + EI V G T DL ++ YL V ET R Y P P++ R V E
Sbjct: 294 DKQERLYREIREVCGD------ERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHE 347
Query: 224 EVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFI 283
+ LG + +PAG I + I G + +K W NP ++ PERF ++ S+ Y +
Sbjct: 348 DTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADM------YKTM 401
Query: 284 PFSAGPRNCIGQKYAMLQMKTVISTILRQY 313
F AG R C G AML I+ +++++
Sbjct: 402 AFGAGKRVCAGSLQAMLIACMAIARLVQEF 431
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 85.8 bits (212), Expect = 2e-18
Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 62/278 (22%)
Query: 45 DKNKDLKINSENGNEEEFLDIEYKNTKTKSFLELLLEIDHAADDK--LTDAEILPELTTL 102
D ++ K + G E + + T S+++ LL+I D LTD EI+ +
Sbjct: 259 DARREYKNHLGQGGEPP----KKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEF 314
Query: 103 FFAALDTTATANSTILLLLAMYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMA 162
A DTT+TA I+ L P + K L+
Sbjct: 315 LNAGTDTTSTALQWIMAELVKNPSIQSK---LH--------------------------- 344
Query: 163 YTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVF-RQV 221
DEI + G E+ + D+H M YL+ V+ E R +PPA V +
Sbjct: 345 ---------DEIKAKTGDDQEEV----SEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKA 391
Query: 222 DEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHP---DESV---SSSHIR 275
E++ +G +++P GA++ +A + R++ W P++F+PERF E V S IR
Sbjct: 392 AEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIR 451
Query: 276 QRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQY 313
+PF G R C G AML ++ ++ ++R++
Sbjct: 452 ------MMPFGVGRRICAGLGIAMLHLEYFVANMVREF 483
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 84.1 bits (208), Expect = 8e-18
Identities = 78/313 (24%), Positives = 127/313 (40%), Gaps = 74/313 (23%)
Query: 24 EKELQKA-KGMDENNNKIDTKDDKNKDLKINSENGNEEEFLDIEYKNTKTKSFLELLLEI 82
EK++++ K +DE ++KI D+++ + G ++ F+++LL +
Sbjct: 239 EKKMREVEKRVDEFHDKII---DEHRRARSGKLPGGKD------------MDFVDVLLSL 283
Query: 83 -DHAADDKLTDAEILPELTTLFFAALDTTATANSTILLLLAMYPEVLQKIDGLYRPERYS 141
+ + D EI + + AA DT+A N + + P VL+KI
Sbjct: 284 PGENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQ--------- 334
Query: 142 NISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLE 201
+E+DSV G R +DL +NYL
Sbjct: 335 ------------------------------EELDSVVG-----RNRMVQESDLVHLNYLR 359
Query: 202 CVIKETARLYPPAPIVF-RQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIP 260
CV++ET R++P P + + + + +PA + + G+ RN W + +F P
Sbjct: 360 CVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRP 419
Query: 261 ERFHPDES--VSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYH---L 315
ER P E V SH + +PFSAG R C G A L + V+ + R +H
Sbjct: 420 ERHWPAEGSRVEISHGPD---FKILPFSAGKRKCPG---APLGVTMVLMALARLFHCFDW 473
Query: 316 SPSPRFQTIADID 328
SP P DID
Sbjct: 474 SP-PDGLRPEDID 485
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 78.3 bits (193), Expect = 6e-16
Identities = 75/298 (25%), Positives = 114/298 (38%), Gaps = 48/298 (16%)
Query: 61 EFLDIEYKNTKTKS-FLELLLEIDHAADDKLTDAEILPELTTLFFAALDTTATANSTILL 119
E + K K L +E+ D TD + + A DTTAT S +
Sbjct: 258 EMDEARKSGKKVKHDILSRFIELGEDPDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVY 317
Query: 120 LLAMYPEVLQKI-DGLYRPERYSNIST---ISSALFRLSAQNLRLMAYTDQRDIVTDEID 175
++ M P V +K+ L E+ S + + Q L+ Y D
Sbjct: 318 MIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTY-----------D 366
Query: 176 SVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQV--DEEVPLGRHVLP 233
S L + YL VI ET RLYP P + + D+ +P G +
Sbjct: 367 S-----------------LGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGT-KVK 408
Query: 234 AGASIMLTIAGIHRNKNYW-VNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNC 292
AG + + R + W + F PER+ D + P+ F F AGPR C
Sbjct: 409 AGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVF-----QNASPFKFTAFQAGPRIC 463
Query: 293 IGQKYAMLQMKTVISTILRQYHLSPSPRFQTIADIDKRIRMDITLRMEDGAVIFQSRK 350
+G+ A LQMK ++ + R + +FQ + + RM L M +G + SR+
Sbjct: 464 LGKDSAYLQMKMALALLCRFF------KFQLVPGHPVKYRMMTILSMANGLKVTVSRR 515
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 76.6 bits (188), Expect = 2e-15
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 191 PADLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAG------ASIMLTIAG 244
DL + YL + E+ RLYPP P + + P VLP+G + I++ I
Sbjct: 348 NEDLEKLVYLHAALSESMRLYPPLPF-----NHKAPAKPDVLPSGHKVDAESKIVICIYA 402
Query: 245 IHRNKNYW-VNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMK 303
+ R ++ W + + F PER+ D + +R Y F+ F++GPR C+G+ A+LQMK
Sbjct: 403 LGRMRSVWGEDALDFKPERWISD----NGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMK 458
Query: 304 TVISTILRQYHLSPSPRFQTIADIDKRIRMDITLRMEDGAVIFQSRK 350
V I++ Y F+ I I LRM+ G + ++K
Sbjct: 459 IVALEIIKNYD------FKVIEGHKIEAIPSILLRMKHGLKVTVTKK 499
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 76.4 bits (188), Expect = 2e-15
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 192 ADLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNY 251
+DL + YL+C +KET RL+PP P++ + E+ + + +P + +M+ I R+KN
Sbjct: 358 SDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNS 417
Query: 252 WVNPIQFIPERF----HPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVIS 307
W +P F P RF PD SH + FIPF +G R+C G + + + ++
Sbjct: 418 WEDPDTFKPSRFLKPGVPD--FKGSH------FEFIPFGSGRRSCPGMQLGLYALDLAVA 469
Query: 308 TIL 310
+L
Sbjct: 470 HLL 472
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 68.9 bits (169), Expect = 7e-13
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 66/230 (28%)
Query: 105 AALDTTATANSTILLLLAMYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYT 164
A DT A+A ++ LL+ +PEV I
Sbjct: 304 AGRDTVASALTSFFWLLSKHPEVASAI--------------------------------- 330
Query: 165 DQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQVDEE 224
+E D V G E + ++ M+YL + E+ RL+PP Q D +
Sbjct: 331 ------REEADRVMGPNQE----AASFEEMKEMHYLHAALYESMRLFPPV-----QFDSK 375
Query: 225 VPLGRHVLPAGASIML-TIAGIH-----RNKNYW-VNPIQFIPERFHPDESVSSSHIRQR 277
VLP G + T H R + W + ++F PER+ + +
Sbjct: 376 FAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERW-----LKNGVFVPE 430
Query: 278 HPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYHL------SPSPRF 321
+P+ + F AG R C+G++ A+++MK+V ++R++ + + +PRF
Sbjct: 431 NPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRF 480
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 68.2 bits (167), Expect = 1e-12
Identities = 61/266 (22%), Positives = 96/266 (36%), Gaps = 59/266 (22%)
Query: 58 NEEEFLDIEYKNTKTKSFLELLLEIDHAADDKLTDAEILPELTTLFFAALDTTATANSTI 117
+E + + + K L+LLL+ + KL D EI+ L A +++
Sbjct: 251 DERRNSRKQNISPRKKDMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWA 310
Query: 118 LLLLAMYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSV 177
+ L +PEVLQK A +Q +I
Sbjct: 311 TIFLQEHPEVLQK-------------------------------AKAEQEEIAKK----- 334
Query: 178 FGGPDEDDGRPP-----TPADLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVL 232
RPP T D+ M YL VI ET RL + VFR+ +V + + +
Sbjct: 335 ---------RPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTI 385
Query: 233 PAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNC 292
P G ++ +H + + NP +F P R+ + + F+PF G R C
Sbjct: 386 PKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWD-NYTPK--------AGTFLPFGLGSRLC 436
Query: 293 IGQKYAMLQMKTVISTILRQYHLSPS 318
G A L++ + L Y L
Sbjct: 437 PGNDLAKLEISIFLHHFLLGYRLERL 462
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 66.6 bits (162), Expect = 4e-12
Identities = 66/248 (26%), Positives = 100/248 (40%), Gaps = 56/248 (22%)
Query: 66 EYKNTKTKSFLELLLEI-DHAADDKLTDAEILPELTTLFFAALDTTATANSTILLLLAMY 124
E K T+ + FL++ + I D A LT EI P + L AA D + A + +
Sbjct: 298 EGKRTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINK 357
Query: 125 PEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDED 184
PE+L K +EID V G
Sbjct: 358 PEILHK---------------------------------------AMEEIDRVVGKE--- 375
Query: 185 DGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQV--DEEVPLGRHVLPAGASIMLTI 242
R +D+ +NY++ +I+E RL+P A V + G H+ P G+ ++L+
Sbjct: 376 --RFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHI-PKGSQVLLSR 432
Query: 243 AGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQM 302
G+ RN W +P+ F PER H +E S + FI FS G R C A +
Sbjct: 433 YGLGRNPKVWSDPLSFKPER-HLNE--CSEVTLTENDLRFISFSTGKRGC-----AAPAL 484
Query: 303 KTVISTIL 310
T I+T++
Sbjct: 485 GTAITTMM 492
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 66.2 bits (161), Expect = 6e-12
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 173 EIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPA----PIVFRQVDEEVPLG 228
E+D V G R +D+ ++NYL+ +ET R++P A P V RQ + LG
Sbjct: 354 ELDEVVG-----KDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQ---DTTLG 405
Query: 229 RHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAG 288
+ +P G+ I + G+ RN W +P+ + PER + ++ F+ FS G
Sbjct: 406 GYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTG 465
Query: 289 PRNCIGQKYAMLQMKTVISTILRQYH 314
R C+G K + M +++ L+ ++
Sbjct: 466 RRGCVGVKVGTIMMVMMLARFLQGFN 491
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 65.7 bits (160), Expect = 8e-12
Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 57/237 (24%)
Query: 90 LTDAEILPELTTLFFAALDTTATANSTILLLLAMYPEVLQKIDGLYRPERYSNISTISSA 149
LTD +I + + FAA DTTA+ + IL LA P VL+
Sbjct: 260 LTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEA------------------- 300
Query: 150 LFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETAR 209
VT+E ++ D+++G T D M VI+ET R
Sbjct: 301 --------------------VTEEQMAIR--KDKEEGESLTWEDTKKMPLTSRVIQETLR 338
Query: 210 LYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESV 269
+ FR+ E+V +++P G ++ IH + + + +P +F P RF V
Sbjct: 339 VASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFE----V 394
Query: 270 SSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYHLSPSPRFQTIAD 326
+ P F+PF G +C G + A L++ +I +HL+ R+ +
Sbjct: 395 APK------PNTFMPFGNGTHSCPGNELAKLEISVLI------HHLTTKYRWSIVGT 439
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 64.9 bits (158), Expect = 1e-11
Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 54/244 (22%)
Query: 75 FLELLL-EIDHAADDKLTDAEILPELTTLFFAALDTTATANSTILLLLAMYPEVLQKIDG 133
FL++++ +++ +KLT I L LF A DT++ S I LA E+L+
Sbjct: 269 FLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSS---SVIEWSLA---EMLKNPSI 322
Query: 134 LYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPAD 193
L R +E+D V G R +D
Sbjct: 323 LKRAH---------------------------------EEMDQVIG-----RNRRLVESD 344
Query: 194 LHSMNYLECVIKETARLYPPAPI-VFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYW 252
L + YL+ + KE+ R +P P+ + R + + + +P + + I I R+ + W
Sbjct: 345 LPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVW 404
Query: 253 VNPIQFIPERFHPDESVSSSHIR---QRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTI 309
NP +F PERF +S + + + + + IPF AG R C G + ++ ++ ++ T+
Sbjct: 405 ENPEEFRPERF-----LSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTL 459
Query: 310 LRQY 313
+ +
Sbjct: 460 VHSF 463
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 61.2 bits (148), Expect = 2e-10
Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 51/261 (19%)
Query: 60 EEFLDIEYKNTKTKSFLELLLEI--DHAADDKLTDAEILPELTTLFFAALDTTATANSTI 117
+E LD +T+SF++LL++I D K T + + + DT A
Sbjct: 252 DETLDPNRPKQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWA 311
Query: 118 LLLLAMYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSV 177
+ L YPE ++K DE+ +V
Sbjct: 312 MTYLIKYPEAMKK---------------------------------------AQDEVRNV 332
Query: 178 FGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVF-RQVDEEVPLGRHVLPAGA 236
G D + D+ ++ YL+ VIKE+ RL P PI+ R+ + +G + +PA
Sbjct: 333 IG-----DKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKT 387
Query: 237 SIMLTIAGIHRNKNYWV-NPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQ 295
I + + R+ W NP +FIPERF + + + +PF +G R C
Sbjct: 388 IIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDF---KGQDFELLPFGSGRRMCPAM 444
Query: 296 KYAMLQMKTVISTILRQYHLS 316
+ ++ + +L ++ S
Sbjct: 445 HLGIAMVEIPFANLLYKFDWS 465
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 61.0 bits (148), Expect = 3e-10
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 193 DLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYW 252
D M + +CVI ET RL + R+ ++V + +P+G ++ IA +H + + +
Sbjct: 339 DYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLY 398
Query: 253 VNPIQFIPERF-HPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILR 311
P F P R+ + SS F+PF GPR C G + A L+M I ++
Sbjct: 399 DQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVL 458
Query: 312 QYH 314
++
Sbjct: 459 NFN 461
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 56.1 bits (135), Expect = 1e-08
Identities = 54/271 (19%), Positives = 97/271 (35%), Gaps = 62/271 (22%)
Query: 48 KDLKINSENGNEEEFLDIEYKNTKTKSFLELLLEIDHAADDKLTDAEILPELTTLFFAAL 107
+ E G E K K L LL A+DD +D EI+ L L A
Sbjct: 236 MKRRKEEEEGAE-----------KKKDMLAALL----ASDDGFSDEEIVDFLVALLVAGY 280
Query: 108 DTTATANSTILLLLAMYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQR 167
+TT+T + + L P L ++ E + I + S + L
Sbjct: 281 ETTSTIMTLAVKFLTETPLALAQLK-----EEHEKIRAMKSDSYSLEW------------ 323
Query: 168 DIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPL 227
+D SM + +CV+ ET R+ +FR+ ++ +
Sbjct: 324 ------------------------SDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEV 359
Query: 228 GRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSA 287
+ +P G + + +H + Y+ + F P R+ + + F PF
Sbjct: 360 KGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVP------SNVFTPFGG 413
Query: 288 GPRNCIGQKYAMLQMKTVISTILRQYHLSPS 318
GPR C G + A + + + ++ ++ P+
Sbjct: 414 GPRLCPGYELARVALSVFLHRLVTRFSWVPA 444
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 55.5 bits (133), Expect = 2e-08
Identities = 56/259 (21%), Positives = 104/259 (40%), Gaps = 51/259 (19%)
Query: 61 EFLDIEYKNTKTKSFLELLLEI--DHAADDKLTDAEILPELTTLFFAALDTTATANSTIL 118
E LD + +T+S ++LL+EI + + T + + + A DT A A +
Sbjct: 254 ETLDPKRVKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGM 313
Query: 119 LLLAMYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVF 178
L YP+VL+K A + R+ + ++ +
Sbjct: 314 TYLMKYPQVLKK-------------------------------AQAEVREYMKEKGSTFV 342
Query: 179 GGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVF-RQVDEEVPLGRHVLPAGAS 237
T D+ ++ Y ++KET R+ P P++ R ++ + + +PAG +
Sbjct: 343 -----------TEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTT 391
Query: 238 IMLTIAGIHRNKNYW-VNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQK 296
+ + + R++ W NP +F PERF E Y FIPF +G R C G +
Sbjct: 392 VNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGT-----DYEFIPFGSGRRMCPGMR 446
Query: 297 YAMLQMKTVISTILRQYHL 315
++ + +L ++
Sbjct: 447 LGAAMLEVPYANLLLNFNF 465
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 55.2 bits (133), Expect = 2e-08
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 49/225 (21%)
Query: 89 KLTDAEILPELTTLFFAALDTTATANSTILLLLAMYPEVLQKIDGLYRPERYSNISTISS 148
KLTD EI+ ++ T+ ++ +T +T + + L +P+ LQ++ R E
Sbjct: 259 KLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQEL----RKEH--------- 305
Query: 149 ALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETA 208
+A +++ P++ P D SM + VI ET+
Sbjct: 306 ------------LAIRERKR------------PED----PIDWNDYKSMRFTRAVIFETS 337
Query: 209 RLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDES 268
RL V R+ +++ L +V+P G I + I+ + + +P+ F P R+ D+S
Sbjct: 338 RLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWL-DKS 396
Query: 269 VSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQY 313
+ S H Y F+ F G R C G++ ++++ T + + +Y
Sbjct: 397 LES------HNYFFL-FGGGTRLCPGKELGIVEISTFLHYFVTRY 434
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 48.6 bits (116), Expect = 3e-06
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 183 EDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTI 242
D G P D S+ + + VI ET R+ V R+ ++V + +++P G ++
Sbjct: 300 ADTGEPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYF 359
Query: 243 AGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQM 302
+H ++ + NP QF P R+ ++ +++S +F PF G R C G A L+
Sbjct: 360 RSVHLDEENYDNPYQFNPWRWQ-EKDMNNS--------SFTPFGGGQRLCPGLDLARLE- 409
Query: 303 KTVISTILRQYHLSPSPRFQTIADIDKRIRMDITLRMEDGAVIFQSRK 350
S L +HL RF+ +A+ D + T+RM+ I+ +R
Sbjct: 410 ---ASIFL--HHL--VTRFRWVAEEDTIVNFP-TVRMKRKLPIWVTRI 449
>gnl|CDD|227463 COG5134, COG5134, Uncharacterized conserved protein [Function
unknown].
Length = 272
Score = 31.6 bits (71), Expect = 0.46
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 24 EKELQKAKGMDENNNKIDTKDDKNKDL-KINSENGNEEEFLDIEYKNTKTKSFLELLLEI 82
EK+L + K N++ I+ D+ NK L + E K + K + L
Sbjct: 138 EKQLTQQKSEKHNSSAINFIDELNKRLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSLK 197
Query: 83 DHAADDKLTDAEILPELTTLFF 104
+ AA D + L
Sbjct: 198 NRAALDIDILPSSSDKDKALLL 219
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 31.8 bits (72), Expect = 0.63
Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 26/189 (13%)
Query: 34 DENNNKIDTKDDKNKDLKI-NSENGNEEEFLDIEYKNTKTKSFLELLLEIDHAADDKLTD 92
D+ ID + + + + N ++ +EE + ++ K LELL+E D L +
Sbjct: 6 DKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDIDLQN 65
Query: 93 AEILPELTTLFFAALDTTATANSTI---LLLLAMYPEVLQKIDGLYRPERYSNISTISSA 149
L L +T++ + L Y ++L+ D + ++ I SA
Sbjct: 66 N----SLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSA 121
Query: 150 LFRLSAQNLR--LMAYTDQRDIV-------------TDEIDSVFGGPDEDDGRPPTPADL 194
L + ++N + +AY + +I+ EI V +E D P+ AD
Sbjct: 122 LCMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDA--PSFADT 179
Query: 195 HSMNYLECV 203
+ LE V
Sbjct: 180 RDLG-LEIV 187
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 28.5 bits (64), Expect = 1.6
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 27 LQKAKGMDENNNKIDTKDDKNKDLKINSENGNEEEFLDIEYKNTKTKSFLELLLEIDHAA 86
L+ K + K K KNK + EEE E + + +
Sbjct: 12 LKGKKIDVKKKKK--KKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEED 69
Query: 87 DDKLTDAEI 95
LT+AE
Sbjct: 70 GMNLTEAER 78
>gnl|CDD|222365 pfam13761, DUF4166, Domain of unknown function (DUF4166). This
domain is often found at the C-terminus of proteins
containing pfam03435.
Length = 158
Score = 29.1 bits (66), Expect = 2.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 330 RIRMDITLRMEDGAVIFQSRKQ 351
+R D+ LR+EDG + +SR+
Sbjct: 89 PLRFDLALRVEDGGLRIRSRRL 110
>gnl|CDD|227545 COG5220, TFB3, Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH, subunit TFB3 [Cell division and chromosome
partitioning / Transcription / DNA replication,
recombination, and repair].
Length = 314
Score = 29.6 bits (66), Expect = 2.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 2 KAKQELYSFIQNVVAIKRQDHEEKELQKAKGMDENNNKIDTKDDKNKDLKINSENGNE 59
+ E+ Q V KR ++++L++ +E NK TK + L SE+GN+
Sbjct: 150 RPTPEVMPGKQKNVLQKRMKLKKRQLERQIEEEERMNKEWTKKEIGNRLGTASEDGNK 207
>gnl|CDD|227654 COG5351, COG5351, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 367
Score = 29.5 bits (66), Expect = 3.0
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 175 DSVFGGPDEDDGRPPTPADLHSMNYLECVIKETA--RLYPPAPI 216
+ FGG TPAD++ N L C P
Sbjct: 142 TNAFGGTIPGTPDTETPADVYRRNPLGCGWVRLDMPADIPGVRA 185
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 29.3 bits (66), Expect = 3.2
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 2 KAKQELYSFIQNVVAIKRQDHEEKELQKAKGMDENNNKIDTKDDKNKDLKINSENGNEEE 61
K+K + S+I + V + ++ ++ + + K D K+DKN + K SE +++
Sbjct: 18 KSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKK 77
Query: 62 FLDIEYKNTKTK 73
E K K++
Sbjct: 78 ---KEKKEPKSE 86
>gnl|CDD|235946 PRK07143, PRK07143, hypothetical protein; Provisional.
Length = 279
Score = 29.2 bits (66), Expect = 3.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 50 LKINSENGNEEEFLDIEY-KNTKTKSFLELLLEIDH---AADDKLTDAEI 95
LKIN N N+ +F D + N + F+E++ EI D+ + + +I
Sbjct: 216 LKINFNNKNKIKFFDFDLIINKYQEIFIEIVKEIRIISSNEDNNILNDDI 265
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 29.1 bits (66), Expect = 4.0
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 162 AYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQV 221
+ ++++V + I ++ + D P E A P+VF +V
Sbjct: 472 RWQQEKELV-EAILALRAELEADADAPADDDAALRAQLAELE-AALASAQGEEPLVFPEV 529
Query: 222 DEE-----------VPLGR 229
D + +P+GR
Sbjct: 530 DAQAVAEVVADWTGIPVGR 548
>gnl|CDD|226097 COG3567, COG3567, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 452
Score = 28.7 bits (64), Expect = 5.6
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 39 KIDTKDDKNKDLKINSENGNEEEFLDIEYKNTKTKSFLELLLEIDHAADDKLTDAEILPE 98
KI D S+ GN+E + K+ LLL+ + K L +
Sbjct: 241 KISGLSDTLS-----SDQGNQEAHKRFQLAAMA-KAINMLLLDAEEEYTQKSNSFSGLKD 294
Query: 99 LTTLFFAALDTTATANSTILL 119
L F + A +T L
Sbjct: 295 LLDQFMMDVAGAADMPATRLF 315
>gnl|CDD|235541 PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.
Length = 367
Score = 28.2 bits (64), Expect = 6.7
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 33 MDENNN--KIDTKDDKNKDLKINSENGNEEEFLDIEYKN 69
+E + K+ + + K N E G EE L++EY
Sbjct: 275 SNEKSRGVKLSLSEGQLKISANNPEQGEAEEELEVEYSG 313
>gnl|CDD|217847 pfam04018, DUF368, Domain of unknown function (DUF368). Predicted
transmembrane domain of unknown function. Family members
have between 6 and 9 predicted transmembrane segments.
Length = 250
Score = 27.9 bits (63), Expect = 7.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 115 STILLLLAMYPEVLQKIDGLY 135
S ILLLL +Y VL + L
Sbjct: 160 SFILLLLGLYEPVLGAVSELD 180
>gnl|CDD|227347 COG5014, COG5014, Predicted Fe-S oxidoreductase [General function
prediction only].
Length = 228
Score = 27.9 bits (62), Expect = 7.8
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 28/131 (21%)
Query: 94 EILPELTTLFFAALDTTAT---ANSTILLLLAMYPEVLQK--IDGLYRPERYSNISTISS 148
E+L T + L+T + +++ L VL + + G + PE + I+ S
Sbjct: 114 ELLVNNTFV----LETNGLMFGFDRSLVDELVNRLNVLVRVSVKG-WDPESFEKITGASP 168
Query: 149 ALFRLSAQNLRLMAYTDQR-------DIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLE 201
FR + LR + R D ++ + P
Sbjct: 169 EYFRYQLKALRHLHGKGHRFWPAVVYDFFREDGLKELAKRLGEHPPIP-----------C 217
Query: 202 CVIKETARLYP 212
+ E +YP
Sbjct: 218 RIEVEYLEMYP 228
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 28.1 bits (62), Expect = 8.7
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 21 DHEEKELQKAKGMDENNNKIDTKDDKNKDLKINSENGNEEEFLDIEYKNTKTKSFLELLL 80
D + + +++ K + D + K + N+ +E L K LL
Sbjct: 638 DRKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENT----QENHLG-SEKKRHGGVPDILLK 692
Query: 81 EIDHAADDKL 90
EI+ D+K
Sbjct: 693 EIEVEDDEKT 702
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 28.1 bits (63), Expect = 8.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 211 YPPAPIVFRQVDEEVPLGRHVLPAGAS------IMLTIAGI 245
YP AP V V ++P G V G S ++ T+AG+
Sbjct: 344 YPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL 384
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.384
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,331,894
Number of extensions: 1818854
Number of successful extensions: 1806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1757
Number of HSP's successfully gapped: 87
Length of query: 351
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 253
Effective length of database: 6,590,910
Effective search space: 1667500230
Effective search space used: 1667500230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)