RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6575
(351 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 132 bits (332), Expect = 2e-35
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 153 LSAQNLRLMAYTDQRDIVTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYP 212
LS L + D + + +EID+V PPT + M YL+ V+ ET RL+P
Sbjct: 287 LSFIMYELATHPDVQQKLQEEIDAVLPNK-----APPTYDTVLQMEYLDMVVNETLRLFP 341
Query: 213 PAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSS 272
A + R ++V + +P G +M+ +HR+ YW P +F+PERF
Sbjct: 342 IAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKK------ 395
Query: 273 HIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYHLSPSPRFQTIADIDKRIR 332
+ PY + PF +GPRNCIG ++A++ MK + +L+ + P I ++
Sbjct: 396 NKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKE----TQIPLKLS 451
Query: 333 MDITLRMEDGA-VIFQSR 349
+ L+ E + +SR
Sbjct: 452 LGGLLQPEKPVVLKVESR 469
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 125 bits (315), Expect = 4e-33
Identities = 55/286 (19%), Positives = 96/286 (33%), Gaps = 60/286 (20%)
Query: 63 LDIEYKNTKTKSFLELLLEIDHAADDKLTDAEILPELTTLFFAALDTTATANSTILLLLA 122
LD +L + + + ++ + +LFFA +TT+T LL+
Sbjct: 229 LDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLML 288
Query: 123 MYPEVLQKIDGLYRPERYSNISTISSALFRLSAQNLRLMAYTDQRDIVTDEIDSVFGGPD 182
YP V ++ V EI+ V G
Sbjct: 289 KYPHVTER---------------------------------------VQKEIEQVIG--- 306
Query: 183 EDDGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQ-VDEEVPLGRHVLPAGASIMLT 241
RPP D M Y + VI E RL P V ++ +V+P +
Sbjct: 307 --SHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPV 364
Query: 242 IAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQ 301
++ + Y+ P F P F + F+PFS G R C+G+ A +
Sbjct: 365 LSSALHDPRYFETPNTFNPGHFLDANG------ALKRNEGFMPFSLGKRICLGEGIARTE 418
Query: 302 MKTVISTILRQYHLSP---------SPRFQTIADIDKRIRMDITLR 338
+ +TIL+ + ++ +PR + ++ ++ R
Sbjct: 419 LFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLAR 464
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 124 bits (311), Expect = 2e-32
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 170 VTDEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPI-VFRQVDEEVPLG 228
V EID + G P+ D M Y E V+ E R P+ +F E+ +
Sbjct: 297 VQKEIDLIMG-----PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVR 351
Query: 229 RHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAG 288
+ +P G +++ + +H ++ YW +P F PERF A +PFS G
Sbjct: 352 GYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSG------YFAKKEALVPFSLG 405
Query: 289 PRNCIGQKYAMLQMKTVISTILRQYHLSPSPRFQTIADIDKRIRMDITLRMEDGAVIFQS 348
R+C+G+ A ++M + +L+++HL D + R+ +TL+ + + +
Sbjct: 406 RRHCLGEHLARMEMFLFFTALLQRFHLHFPHE----LVPDLKPRLGMTLQPQPYLICAER 461
Query: 349 R 349
R
Sbjct: 462 R 462
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 108 bits (270), Expect = 6e-27
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 188 PPTPADLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPL-GRHVLPAGASIMLTIAGIH 246
P+ + + Y+ V+ E RL+P AP E+ L G + L G +M+ I +H
Sbjct: 300 VPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLH 359
Query: 247 RNKNYWV-NPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTV 305
R+K W + +F PERF +AF PF G R CIGQ++A+ + V
Sbjct: 360 RDKTIWGDDVEEFRPERFENP--------SAIPQHAFKPFGNGQRACIGQQFALHEATLV 411
Query: 306 ISTILRQYHLSPSPRFQTIADIDKRIRMDITLRMEDGAVIFQSRK 350
+ +L+ + + + I+ +TL+ E V +S+K
Sbjct: 412 LGMMLKHFDFEDHT------NYELDIKETLTLKPEGFVVKAKSKK 450
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 104 bits (260), Expect = 1e-25
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 185 DGRPPTPADLHSMNYLECVIKETARLYPPAPIVFRQVD-EEVPLGRHVLPAGASIMLTIA 243
R P D M Y + V+ E R P ++ +++P G +I++++
Sbjct: 308 RNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLT 367
Query: 244 GIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMK 303
+ + + NP F P F + + F+PFSAG R C+G+ A +++
Sbjct: 368 SVLHDNKEFPNPEMFDPHHFLDEGG------NFKKSKYFMPFSAGKRICVGEALAGMELF 421
Query: 304 TVISTILRQYHLSPSP 319
+++IL+ ++L
Sbjct: 422 LFLTSILQNFNLKSLV 437
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 93.4 bits (230), Expect = 9e-22
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 193 DLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYW 252
L + LE V+KET RL+PP I+ R E + H + G + + A +R +
Sbjct: 296 ALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDF 355
Query: 253 VNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQ 312
+P F+P R+ + + +IPF AG C+G +A++Q+K + S +LR+
Sbjct: 356 PDPHDFVPARYEQPRQEDL-----LNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLRE 410
Query: 313 YHLSPSPRFQTIADIDKRIRMDITLRMEDGA-VIFQSR 349
Y + + + + +++ A V ++ R
Sbjct: 411 YEFEMAQP----PESYRNDHSKMVVQLAQPAAVRYRRR 444
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 92.9 bits (229), Expect = 1e-21
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 246 HRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTV 305
+ ++ + F PERF + R + PF G R C+G+ +A+L+ V
Sbjct: 298 VTQRLHFPDGEAFRPERFLEE--------RGTPSGRYFPFGLGQRLCLGRDFALLEGPIV 349
Query: 306 ISTILRQYHLSPSPRFQTIADIDKRIRMDITLRMEDG 342
+ R++ L P P R+ +TLR E G
Sbjct: 350 LRAFFRRFRLDPLP--------FPRVLAQVTLRPEGG 378
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 85.5 bits (210), Expect = 4e-19
Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 22/162 (13%)
Query: 195 HSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVN 254
+ E ++E R YP P + V ++ G S++L + G + + W +
Sbjct: 266 GNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDH 325
Query: 255 PIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAG----PRNCIGQKYAMLQMKTVISTIL 310
P +F PERF E + + IP G C G+ + MK + ++
Sbjct: 326 PDEFRPERFAERE---------ENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLV 376
Query: 311 RQYHLSPSPRFQTIADIDKRIRMD-ITLRMEDGAVI-FQSRK 350
Q + + + E G V+ RK
Sbjct: 377 HQIEYDVPEQ-------SLHYSLARMPSLPESGFVMSGIRRK 411
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 84.1 bits (206), Expect = 1e-18
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 211 YPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVS 270
P R + + + G IML+ +R++ + NP +F RF
Sbjct: 311 TAPVKSFMRTALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDITRF------- 363
Query: 271 SSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQY---HLSPSPRF 321
P + F G C+GQ A L+MK +L + LS PR
Sbjct: 364 --------PNRHLGFGWGAHMCLGQHLAKLEMKIFFEELLPKLKSVELSGPPRL 409
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 81.0 bits (198), Expect = 1e-17
Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 15/103 (14%)
Query: 211 YPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVS 270
+ V + + G I+ + A +R+ ++ + F R
Sbjct: 282 AVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDATRT------- 334
Query: 271 SSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQY 313
+ F G C+G A +++ + ++ ++
Sbjct: 335 --------VKEHLAFGHGVHFCLGAPLARMEVTLALESLFGRF 369
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 77.9 bits (190), Expect = 1e-16
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 195 HSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVN 254
+ + V + A + R E+V +G ++ A I+ + +R++ + N
Sbjct: 264 NPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFEN 323
Query: 255 PIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQY 313
P +F R P P + F G CI + A ++ TV ST+ +++
Sbjct: 324 PDEFNMNRKWP-------------PQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKF 369
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 77.9 bits (190), Expect = 1e-16
Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 19/144 (13%)
Query: 195 HSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVN 254
+ V + L P R E++ L + G S++ ++ +R+ +
Sbjct: 261 DEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPD 320
Query: 255 PIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYH 314
+ R P + F G +C+G A L+++TV + + R++
Sbjct: 321 VDRLDVTR---------------EPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRF- 364
Query: 315 LSPSPRFQTIADIDKRIRMDITLR 338
P+ R A D R+
Sbjct: 365 --PALRLADPAQ-DTEFRLTTPAY 385
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 76.8 bits (187), Expect = 4e-16
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 21/146 (14%)
Query: 195 HSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRN-KNYWV 253
+ V + P + ++ R E+VP+G V+PAG +++++ + R+ + +
Sbjct: 264 GEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGP 323
Query: 254 NPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQY 313
+F R I F GP C G + ++ + + ++
Sbjct: 324 TADRFDLTRTSG--------------NRHISFGHGPHVCPGAALSRMEAGVALPALYARF 369
Query: 314 HLSPSPRFQTIADIDK-RIRMDITLR 338
P + R + +T
Sbjct: 370 -----PHLDLAVPAAELRNKPVVTQN 390
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 74.1 bits (180), Expect = 2e-15
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 15/123 (12%)
Query: 195 HSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVN 254
++E R PP R E+V + V+ G + + IA +R++ + +
Sbjct: 235 VREKGALKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKD 294
Query: 255 PIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYH 314
P FIP+R P + F +G C+G A L+ + + +++
Sbjct: 295 PDSFIPDR---------------TPNPHLSFGSGIHLCLGAPLARLEARIALEEFAKKFR 339
Query: 315 LSP 317
+
Sbjct: 340 VKE 342
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 74.1 bits (180), Expect = 3e-15
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 21/131 (16%)
Query: 209 RLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDES 268
R P R EEV +G +P +++++ +R+ + +P +F R
Sbjct: 281 RYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVTRD----- 335
Query: 269 VSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQYHLSPSPRFQTIADID 328
+ F G C+G+ A L+ + + + ++ P D D
Sbjct: 336 ----------TRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRF-----PALSLGIDAD 380
Query: 329 K-RIRMDITLR 338
R + LR
Sbjct: 381 DVVWRRSLLLR 391
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 72.9 bits (177), Expect = 7e-15
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 225 VPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIP 284
V + + AG ++ ++ +R+ + +P + ER P +
Sbjct: 294 VEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFER---------------SPNPHVS 338
Query: 285 FSAGPRNCIGQKYAMLQMKTVISTILRQYHLSPSPRFQTIADIDKRIRMDITLR 338
F GP C G A L+ + ++ +L + P + +A D + +R
Sbjct: 339 FGFGPHYCPGGMLARLESELLVDAVLDRV---PGLKL-AVAPEDVPFKKGALIR 388
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 72.2 bits (175), Expect = 1e-14
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 18/109 (16%)
Query: 233 PAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNC 292
G + L I R+ + P F R A + + GP C
Sbjct: 306 KKGEMVFLLIPSALRDGTVFSRPDVFDVRRD---------------TSASLAYGRGPHVC 350
Query: 293 IGQKYAMLQMKTVISTILRQY---HLSPSPRFQTIADIDKRIRMDITLR 338
G A L+ + + TI R++ L +P F +++ L+
Sbjct: 351 PGVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYHPAFRNIESLNVILK 399
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 70.6 bits (171), Expect = 4e-14
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 15/119 (12%)
Query: 195 HSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVN 254
V + L P R ++V + ++ AG ++ +I +R++ +
Sbjct: 271 SPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPD 330
Query: 255 PIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQY 313
P R + + F G C+G A ++ T+ R++
Sbjct: 331 PDVLDANRA---------------AVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRF 374
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 70.3 bits (170), Expect = 4e-14
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 195 HSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVN 254
N I+E R PP R+ E V LG + G + + IA +R++ + +
Sbjct: 235 REENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHD 294
Query: 255 PIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILRQY 313
+FIP+R +P + F +G C+G A L+ + I +++
Sbjct: 295 GEKFIPDR---------------NPNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRF 338
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 70.2 bits (170), Expect = 6e-14
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 20/95 (21%)
Query: 246 HRNKNYWVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTV 305
+ + ++ NP +R +P + + F G C G +
Sbjct: 312 NFDPEHFPNPGSIELDRPNP--------------TSHLAFGRGQHFCPGSALGRRHAQIG 357
Query: 306 ISTILRQYHLSPSPRFQTIADIDK-RIRMDITLRM 339
I +L++ P ID+ R R+
Sbjct: 358 IEALLKKM-----PGVDLAVPIDQLVWRTRFQRRI 387
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 67.8 bits (164), Expect = 3e-13
Identities = 19/155 (12%), Positives = 39/155 (25%), Gaps = 20/155 (12%)
Query: 192 ADLHSMNYLECVIKETARLYPPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNY 251
+L E R + + L G I+L ++
Sbjct: 262 QELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERE 321
Query: 252 WVNPIQFIPERFHPDESVSSSHIRQRHPYAFIPFSAGPRNCIGQKYAMLQMKTVISTILR 311
P+ R + F G C+GQ A ++ + L
Sbjct: 322 NACPMHVDFSR---------------QKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLT 366
Query: 312 QYHLSPSPRFQTIADIDKRIRMDITLRMEDGAVIF 346
+ P F + + I ++ +++
Sbjct: 367 RI-----PDFSIAPGAQIQHKSGIVSGVQALPLVW 396
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 29.3 bits (65), Expect = 0.61
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 1 MKAKQELYSFIQNVVAIKRQDHEEKELQKAKGMDENNNKIDT---KDDKNKDLKINSENG 57
KA L + I KRQ E + G + +++ T + D +IN
Sbjct: 258 AKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLY 317
Query: 58 NEEEFLD 64
+E ++
Sbjct: 318 RLDEVME 324
>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor
(GC-SF) receptor, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 26.0 bits (57), Expect = 3.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 202 CVIKETARLYPPAP-IVFRQVDEEVPLGRH 230
C+IK+ P P I++R E P GR
Sbjct: 21 CIIKQNCSHLDPEPQILWRLGAELQPGGRQ 50
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 27.3 bits (60), Expect = 3.1
Identities = 13/67 (19%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 1 MKAKQELYSFIQNVVAIKRQDHEEKELQKAKGMDENNNKIDT---KDDKNKDLKINSENG 57
+A +++ + + V +++++ E++ ++ K ++I + D + KDL+ E
Sbjct: 282 DQAMKQMKAKLYEV-EMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVETR 340
Query: 58 NEEEFLD 64
N + LD
Sbjct: 341 NTQAVLD 347
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 27.3 bits (60), Expect = 3.1
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 3/57 (5%)
Query: 23 EEKELQKAKGMDENNNKIDTKDDKNKDLKINSENGNEEEFLDIEYKNTKTKSFLELL 79
EE Q + + + K +++ + F E L
Sbjct: 252 EEYNKQAKQYQEYQKGN---NYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEEL 305
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 26.6 bits (58), Expect = 5.1
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 19/66 (28%)
Query: 155 AQNLRLMAYTDQRDIVT---DEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLY 211
+ + + + T E SVFGG + ++ +K LY
Sbjct: 51 HRTVLSRHFKEPAMASTSSFTEGASVFGG----------------GSNIKTAVKNIFSLY 94
Query: 212 PPAPIV 217
P I
Sbjct: 95 NPDIIA 100
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 26.6 bits (58), Expect = 5.8
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 19/58 (32%)
Query: 163 YTDQRDIVT---DEIDSVFGGPDEDDGRPPTPADLHSMNYLECVIKETARLYPPAPIV 217
+ + V+ E +VFGG N + ++ + LY P I
Sbjct: 105 FKEPIACVSDSMTEDAAVFGG----------------NNNMNLGLQNASALYKPEIIA 146
>d1mpxa1 b.18.1.13 (A:405-637) Alpha-amino acid ester hydrolase
{Xanthomonas citri [TaxId: 346]}
Length = 233
Score = 25.9 bits (56), Expect = 7.0
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 230 HVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDES 268
H G +M+ + Y NP ++P F
Sbjct: 172 HTFQPGHRVMVQVQS-SLFPLYDRNPQTYVPNIFFAKPG 209
>d2b9va1 b.18.1.13 (A:435-666) Alpha-amino acid ester hydrolase
{Acetobacter pasteurianus [TaxId: 438]}
Length = 232
Score = 25.9 bits (56), Expect = 8.0
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 212 PPAPIVFRQVDEEVPLGRHVLPAGASIMLTIAGIHRNKNYWVNPIQFIPERFHPDES 268
P +P HV G IM+ I Y NP +F+P F +
Sbjct: 152 ALQPDATLHYHFTLPAVNHVFAKGHRIMVQIQS-SWFPLYDRNPQKFVPNIFDAKPA 207
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.9 bits (56), Expect = 8.1
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 7 LYSFIQNVVAIKRQDHEE----KELQKAKGMDENNNKIDTKDDKNKDLKI--NSENGNEE 60
L FI ++ K ++ E KEL + + + +D K K+ G++
Sbjct: 5 LAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDI 64
Query: 61 EFLDIE-YKNTKTKSFLE 77
+F +E + + E
Sbjct: 65 DFGHMEAVNLLSSNRYTE 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.384
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,290,033
Number of extensions: 62077
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 37
Length of query: 351
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,226,816
Effective search space: 325106240
Effective search space used: 325106240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.1 bits)