BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6577
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 7 GQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTD 66
GQG+++ N E W KQR+++ F L S ++ F E+++ L I+ EA+ +T
Sbjct: 74 GQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLVEIL--EAKADGQTPVS 131
Query: 67 MK--LKLAGFDMIVRNVLGIQ 85
M+ L D++ + G++
Sbjct: 132 MQDMLTYTAMDILAKAAFGME 152
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 17 EVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDM 76
E WK+ R +L+PTF L + + +L +R EA+ G D+
Sbjct: 102 EEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDV 161
Query: 77 IVRNVLGIQINAQRNPR 93
I G+ I++ NP+
Sbjct: 162 ITSTSFGVNIDSLNNPQ 178
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 17 EVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDM 76
E WK+ R +L+PTF L + + +L +R EA+ G D+
Sbjct: 103 EEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDV 162
Query: 77 IVRNVLGIQINAQRNPR 93
I G+ I++ NP+
Sbjct: 163 ITSTSFGVNIDSLNNPQ 179
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 17 EVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDM 76
E WK+ R +L+PTF L + + +L +R EA+ G D+
Sbjct: 104 EEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDV 163
Query: 77 IVRNVLGIQINAQRNPR 93
I G+ I++ NP+
Sbjct: 164 ITSTSFGVNIDSLNNPQ 180
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 7 GQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTD 66
G+G+LT+ E WK+ RK L F K + Y + EE++ R E +D
Sbjct: 76 GRGLLTDWG-ESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLA 134
Query: 67 MKLKLAG 73
+ L+L G
Sbjct: 135 LSLRLLG 141
>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
Length = 389
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 7 GQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTD 66
G+G+LT+ WK+ RK L F K + Y + EE+ R E +D
Sbjct: 76 GRGLLTDWGKS-WKEARKALKDPFLPKSVRGYREAMEEEAWAFFGEWRGEERDLDHEMLA 134
Query: 67 MKLKLAG 73
+ L+L G
Sbjct: 135 LSLRLLG 141
>pdb|3SLR|A Chain A, Crystal Structure Of N-Terminal Part Of The Protein
Bf1531 From Bacteroides Fragilis Containing Phosphatase
Domain Complexed With Mg
Length = 387
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 7 GQGILTNVNTEVWKK-----QRKILTPTF-HFKILHSYIQYFYEESQLL 49
G+GIL N N E+W+ +R+I PT +++ Y F+ +LL
Sbjct: 42 GEGILRNYNIELWEAEYNQVERQIXDPTSDYYQFEPDYTIIFHSTHKLL 90
>pdb|2WP0|C Chain C, Crystal Structure Of A Hoba-Dnaa (Domain I-Ii) Complex
From Helicobacter Pylori.
pdb|2WP0|D Chain D, Crystal Structure Of A Hoba-Dnaa (Domain I-Ii) Complex
From Helicobacter Pylori
Length = 112
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 37 SYIQYFYEESQLLCNIIREEAQDGA-------ETKTDMKLKLAGFDMIVRNVLGIQINAQ 89
S I +FY +Q+LC I A+ GA + K M L D+ + IQINAQ
Sbjct: 42 SDIAFFYAPNQVLCTTIT--AKYGALLKEILSQNKVGMHLA-HSVDVRIEVAPKIQINAQ 98
Query: 90 RN 91
N
Sbjct: 99 SN 100
>pdb|4DUC|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
pdb|4DUC|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
Length = 472
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 GQGILTNVNTEV-WKKQRKILTPTFHFKILHSY 38
G G+LT+ E WKK IL P+F + + Y
Sbjct: 84 GDGLLTSWTHEKNWKKAHNILLPSFSQQAMKGY 116
>pdb|4DUD|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUD|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUE|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
pdb|4DUE|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
Length = 471
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 GQGILTNVNTEV-WKKQRKILTPTFHFKILHSY 38
G G+LT+ E WKK IL P+F + + Y
Sbjct: 83 GDGLLTSWTHEKNWKKAHNILLPSFSQQAMKGY 115
>pdb|4DUF|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|C Chain C, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|D Chain D, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
Length = 471
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 GQGILTNVNTEV-WKKQRKILTPTFHFKILHSY 38
G G+LT+ E WKK IL P+F + + Y
Sbjct: 83 GDGLLTSWTHEKNWKKAHNILLPSFSQQAMKGY 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,647,172
Number of Sequences: 62578
Number of extensions: 85476
Number of successful extensions: 232
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 17
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)