Query psy6577
Match_columns 96
No_of_seqs 130 out of 1419
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 21:42:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158|consensus 99.6 1.8E-14 3.9E-19 92.1 8.1 84 8-92 116-199 (499)
2 PLN02738 carotene beta-ring hy 99.6 2.8E-14 6.1E-19 93.9 8.4 84 6-90 210-293 (633)
3 PLN02169 fatty acid (omega-1)- 99.5 7.5E-14 1.6E-18 89.8 6.9 85 4-89 113-199 (500)
4 PLN02936 epsilon-ring hydroxyl 99.5 2.1E-13 4.5E-18 87.5 8.7 86 5-91 94-180 (489)
5 PLN02426 cytochrome P450, fami 99.5 1.8E-13 4E-18 88.1 8.3 86 4-90 117-206 (502)
6 PLN02290 cytokinin trans-hydro 99.5 2.5E-13 5.5E-18 87.6 8.6 82 5-87 139-221 (516)
7 PLN03195 fatty acid omega-hydr 99.5 4E-13 8.7E-18 86.7 8.4 85 5-90 110-195 (516)
8 PTZ00404 cytochrome P450; Prov 99.5 1.6E-13 3.6E-18 87.7 6.5 82 6-88 108-189 (482)
9 KOG0157|consensus 99.4 1E-12 2.3E-17 84.6 7.0 80 2-83 113-192 (497)
10 PLN02687 flavonoid 3'-monooxyg 99.3 8.3E-12 1.8E-16 80.7 8.3 79 9-88 117-196 (517)
11 PLN02394 trans-cinnamate 4-mon 99.3 2.1E-11 4.5E-16 78.5 7.5 78 10-88 116-195 (503)
12 PLN02966 cytochrome P450 83A1 99.3 2.3E-11 5.1E-16 78.4 7.7 75 14-88 118-193 (502)
13 PLN02971 tryptophan N-hydroxyl 99.2 7.1E-11 1.5E-15 76.9 8.0 77 10-87 145-222 (543)
14 PLN03234 cytochrome P450 83B1; 99.2 8.2E-11 1.8E-15 75.8 8.3 76 14-89 117-193 (499)
15 PLN00110 flavonoid 3',5'-hydro 99.2 8.1E-11 1.7E-15 76.0 7.7 77 9-86 115-192 (504)
16 KOG0159|consensus 99.2 1.4E-10 3.1E-15 74.2 8.6 83 8-91 140-226 (519)
17 PLN02648 allene oxide synthase 99.2 2.8E-11 6E-16 77.8 5.4 78 9-88 117-194 (480)
18 PLN03112 cytochrome P450 famil 99.2 1.1E-10 2.3E-15 75.5 8.1 74 14-87 120-194 (514)
19 PLN00168 Cytochrome P450; Prov 99.2 1.5E-10 3.3E-15 75.0 8.2 74 14-87 126-200 (519)
20 KOG0156|consensus 99.2 1.2E-10 2.5E-15 75.1 7.4 82 7-89 109-191 (489)
21 PLN02500 cytochrome P450 90B1 99.2 1.4E-10 2.9E-15 74.7 6.7 77 6-87 120-198 (490)
22 PF00067 p450: Cytochrome P450 99.2 5.8E-11 1.3E-15 74.5 4.7 83 5-89 82-165 (463)
23 PLN03018 homomethionine N-hydr 99.2 2.6E-10 5.6E-15 74.2 7.8 80 9-88 126-206 (534)
24 PLN02183 ferulate 5-hydroxylas 99.1 3.7E-10 8.1E-15 73.1 7.4 77 8-88 119-196 (516)
25 COG2124 CypX Cytochrome P450 [ 99.1 3.2E-10 6.9E-15 71.8 6.8 79 4-88 84-163 (411)
26 PLN02196 abscisic acid 8'-hydr 99.1 2.8E-10 6.1E-15 72.8 6.1 75 6-86 113-188 (463)
27 PLN02302 ent-kaurenoic acid ox 99.0 1.7E-09 3.6E-14 69.5 7.7 77 6-87 125-203 (490)
28 PLN02655 ent-kaurene oxidase 99.0 3.5E-09 7.6E-14 67.9 7.8 79 10-89 84-166 (466)
29 PLN03141 3-epi-6-deoxocathaste 98.9 3E-09 6.6E-14 67.9 6.0 78 4-86 87-166 (452)
30 PLN02774 brassinosteroid-6-oxi 98.9 4.2E-09 9E-14 67.5 6.0 76 6-86 108-185 (463)
31 PLN02987 Cytochrome P450, fami 98.5 5.8E-07 1.3E-11 58.1 6.5 76 5-87 111-188 (472)
32 KOG0684|consensus 94.5 0.11 2.4E-06 34.1 4.6 83 3-88 108-191 (486)
33 KOG4128|consensus 82.1 11 0.00024 24.4 6.9 73 14-87 143-230 (457)
34 cd08780 Death_TRADD Death Doma 71.9 12 0.00025 19.2 5.7 68 16-83 13-89 (90)
35 PF01707 Peptidase_C9: Peptida 60.7 9.7 0.00021 22.4 2.1 21 68-88 84-104 (202)
36 PHA01327 hypothetical protein 48.4 6.5 0.00014 17.0 0.1 20 4-24 7-27 (49)
37 PF06167 Peptidase_M90: Glucos 42.0 84 0.0018 19.5 4.2 29 61-89 66-94 (253)
38 PF11616 EZH2_WD-Binding: WD r 35.1 19 0.00041 14.4 0.5 8 16-23 19-26 (30)
39 PF11978 MVP_shoulder: Shoulde 34.0 84 0.0018 17.1 5.0 43 41-87 48-90 (118)
40 PF14840 DNA_pol3_delt_C: Proc 31.0 95 0.0021 16.8 3.5 32 44-75 86-117 (125)
41 PF07203 DUF1412: Protein of u 30.0 23 0.00049 16.1 0.4 16 17-32 34-49 (53)
42 PRK12333 nucleoside triphospha 28.0 1.4E+02 0.0031 17.9 5.4 47 34-84 24-70 (204)
43 PF00325 Crp: Bacterial regula 27.8 56 0.0012 13.2 2.5 26 30-55 3-28 (32)
44 PHA03231 glycoprotein BALF4; P 25.1 1.9E+02 0.004 21.6 4.1 46 41-88 446-491 (829)
45 PF13224 DUF4032: Domain of un 22.5 1.3E+02 0.0029 17.4 2.6 63 16-78 46-112 (165)
46 PF13711 DUF4160: Domain of un 22.1 1.1E+02 0.0023 14.4 3.6 26 28-53 40-65 (66)
47 PHA02943 hypothetical protein; 22.0 1.8E+02 0.0038 16.9 6.3 64 17-88 82-145 (165)
48 PF13438 DUF4113: Domain of un 21.4 55 0.0012 14.7 0.8 17 16-32 28-44 (52)
49 COG3852 NtrB Signal transducti 20.9 2.6E+02 0.0056 18.4 6.0 31 26-56 157-187 (363)
No 1
>KOG0158|consensus
Probab=99.57 E-value=1.8e-14 Score=92.07 Aligned_cols=84 Identities=24% Similarity=0.350 Sum_probs=75.2
Q ss_pred cccccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccccc
Q psy6577 8 QGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQIN 87 (96)
Q Consensus 8 ~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 87 (96)
.++++ +.|+.||.+|..++|.|+..+++.+.+.+.+.+.++++.+++....+..+++.+.+..+|.|||++++||.+.+
T Consensus 116 ~~Lf~-~~g~~WK~lR~~lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~AfG~~~~ 194 (499)
T KOG0158|consen 116 LNLFF-LRGERWKRLRTKLSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSCAFGLDAN 194 (499)
T ss_pred cCchh-ccCchHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHhhcccchh
Confidence 56777 89999999999999999999999999999999999999999864333578999999999999999999999998
Q ss_pred CCcCC
Q psy6577 88 AQRNP 92 (96)
Q Consensus 88 ~~~~~ 92 (96)
.+.++
T Consensus 195 s~~d~ 199 (499)
T KOG0158|consen 195 SLRDP 199 (499)
T ss_pred hhcCc
Confidence 77644
No 2
>PLN02738 carotene beta-ring hydroxylase
Probab=99.56 E-value=2.8e-14 Score=93.90 Aligned_cols=84 Identities=24% Similarity=0.548 Sum_probs=76.0
Q ss_pred cccccccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccc
Q psy6577 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQ 85 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~ 85 (96)
.+.+++. .+|+.|+.+|+++.+.|+.+.++.+.+.+.+.+++++++|......+.++|+.+.+..+++|||+.++||.+
T Consensus 210 ~g~~l~~-~dge~wr~rRr~l~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~ 288 (633)
T PLN02738 210 MGKGLIP-ADGEIWRVRRRAIVPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYD 288 (633)
T ss_pred cCCceec-CCcHHHHHHHHhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCC
Confidence 4667887 899999999999999999999999999999999999999987655677999999999999999999999999
Q ss_pred ccCCc
Q psy6577 86 INAQR 90 (96)
Q Consensus 86 ~~~~~ 90 (96)
++...
T Consensus 289 ~~~~~ 293 (633)
T PLN02738 289 FDSLS 293 (633)
T ss_pred ccccc
Confidence 87543
No 3
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.50 E-value=7.5e-14 Score=89.81 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=72.0
Q ss_pred cccccccccccCCchHHHhhhhcCCCCChHHHhhH--HHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHH
Q psy6577 4 LQMGQGILTNVNTEVWKKQRKILTPTFHFKILHSY--IQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNV 81 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~--~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 81 (96)
+++|+|+++ ++|+.|+.+|++++++|+...++.+ .+.+.+.++.+++.+.+.+..+.++|+.+.+..+++|+|++++
T Consensus 113 ~~~g~gl~~-~~g~~Wr~~Rk~l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~ 191 (500)
T PLN02169 113 DVLGEGILT-VDFELWEDLRKSNHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSSILM 191 (500)
T ss_pred HhhcCcccc-cCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHHhhe
Confidence 456889999 9999999999999999998877643 3667777888888887655556789999999999999999999
Q ss_pred hcccccCC
Q psy6577 82 LGIQINAQ 89 (96)
Q Consensus 82 fG~~~~~~ 89 (96)
||.+.+..
T Consensus 192 fG~~~~~~ 199 (500)
T PLN02169 192 TGYDPMSL 199 (500)
T ss_pred eCCCcccc
Confidence 99987643
No 4
>PLN02936 epsilon-ring hydroxylase
Probab=99.50 E-value=2.1e-13 Score=87.55 Aligned_cols=86 Identities=19% Similarity=0.389 Sum_probs=74.4
Q ss_pred ccccccccccCCchHHHhhhhcCCCCChHHHhhHHH-HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhc
Q psy6577 5 QMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQ-YFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 83 (96)
+++.++++ .+|+.|+++|+++++.|+.+.+..+.+ .+.+.++.+++.+.+...++.++|+.+.+..+++|+++.++||
T Consensus 94 ~~~~~i~~-~~g~~wk~~Rk~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG 172 (489)
T PLN02936 94 LFGSGFAI-AEGELWTARRRAVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSVFN 172 (489)
T ss_pred HhcCcccc-CCchHHHHHHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcC
Confidence 45678888 899999999999999999888888755 7788899999999876545678999999999999999999999
Q ss_pred ccccCCcC
Q psy6577 84 IQINAQRN 91 (96)
Q Consensus 84 ~~~~~~~~ 91 (96)
.+++..+.
T Consensus 173 ~~~~~~~~ 180 (489)
T PLN02936 173 YNFDSLTT 180 (489)
T ss_pred CCcccccc
Confidence 99876543
No 5
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.50 E-value=1.8e-13 Score=88.11 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=72.7
Q ss_pred cccccccccccCCchHHHhhhhcCCCCChHHHhhHH--HHHHHHHHHHHHHHHHHhhc--CCccchhHHHHHHHHHHHHH
Q psy6577 4 LQMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYI--QYFYEESQLLCNIIREEAQD--GAETKTDMKLKLAGFDMIVR 79 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~vi~~ 79 (96)
.++|+|+++ ++|+.|+.+||++++.|+.++++.+. +.+.+.++.+++.+.+.... +.++|+.+.+..+++|+|+.
T Consensus 117 ~~~g~gi~~-~~g~~wk~~Rk~l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~ 195 (502)
T PLN02426 117 DLLGRGIFN-VDGDSWRFQRKMASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICK 195 (502)
T ss_pred HhcCCceee-cCcHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHH
Confidence 456889998 99999999999999999999888864 56777788888888765422 35799999999999999999
Q ss_pred HHhcccccCCc
Q psy6577 80 NVLGIQINAQR 90 (96)
Q Consensus 80 ~~fG~~~~~~~ 90 (96)
++||.+++..+
T Consensus 196 ~~fG~~~~~l~ 206 (502)
T PLN02426 196 FSFGLDPGCLE 206 (502)
T ss_pred HHhCCCCcccC
Confidence 99999987654
No 6
>PLN02290 cytokinin trans-hydroxylase
Probab=99.49 E-value=2.5e-13 Score=87.55 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=73.6
Q ss_pred ccccccccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHHHHHHHHHhc
Q psy6577 5 QMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDG-AETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~vi~~~~fG 83 (96)
++|.++++ ++|+.|+++|+++.+.|+.++++.+.+.+.+.++.+++.|.+....+ .++|+.+.+..+++|+++.++||
T Consensus 139 ~~g~~l~~-~~g~~Wk~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG 217 (516)
T PLN02290 139 FIGRGLLM-ANGADWYHQRHIAAPAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTEVEIGEYMTRLTADIISRTEFD 217 (516)
T ss_pred HhcCCccc-cCchHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEhHHHHHHHHHHHHHHHHcC
Confidence 45778888 89999999999999999999999999999999999999998765433 47999999999999999999999
Q ss_pred cccc
Q psy6577 84 IQIN 87 (96)
Q Consensus 84 ~~~~ 87 (96)
.+++
T Consensus 218 ~~~~ 221 (516)
T PLN02290 218 SSYE 221 (516)
T ss_pred Cccc
Confidence 8875
No 7
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.47 E-value=4e-13 Score=86.66 Aligned_cols=85 Identities=25% Similarity=0.363 Sum_probs=71.9
Q ss_pred ccccccccccCCchHHHhhhhcCCCCChHHHhhHHHHH-HHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhc
Q psy6577 5 QMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYF-YEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 83 (96)
+++.++++ .+|+.|+++|+++++.|+.++++.+.+.+ .+.+..+.+.+.+....+.++|+.+.+..+++|+|+.++||
T Consensus 110 ~~g~~l~~-~~g~~w~~~Rr~l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG 188 (516)
T PLN03195 110 LLGDGIFN-VDGELWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGFG 188 (516)
T ss_pred HhcCeeec-cCcHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHhC
Confidence 45778887 89999999999999999999999998876 66677777777654335668999999999999999999999
Q ss_pred ccccCCc
Q psy6577 84 IQINAQR 90 (96)
Q Consensus 84 ~~~~~~~ 90 (96)
.+++..+
T Consensus 189 ~~~~~~~ 195 (516)
T PLN03195 189 VEIGTLS 195 (516)
T ss_pred CCccccc
Confidence 9887544
No 8
>PTZ00404 cytochrome P450; Provisional
Probab=99.47 E-value=1.6e-13 Score=87.75 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=74.1
Q ss_pred cccccccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccc
Q psy6577 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQ 85 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~ 85 (96)
++.|+++ .+|+.|+++|+++.++|+.+.++.+.+.+.+.+..+++.|.+....+.++|+.+.+..+++|+++.++||.+
T Consensus 108 ~~~~l~~-~~g~~w~~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~ 186 (482)
T PTZ00404 108 FYHGIVT-SSGEYWKRNREIVGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKYIFNED 186 (482)
T ss_pred cCCceec-cChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhccc
Confidence 3678888 899999999999999999999999999999999999999986554566799999999999999999999998
Q ss_pred ccC
Q psy6577 86 INA 88 (96)
Q Consensus 86 ~~~ 88 (96)
++.
T Consensus 187 ~~~ 189 (482)
T PTZ00404 187 ISF 189 (482)
T ss_pred ccc
Confidence 764
No 9
>KOG0157|consensus
Probab=99.41 E-value=1e-12 Score=84.60 Aligned_cols=80 Identities=36% Similarity=0.640 Sum_probs=70.6
Q ss_pred cccccccccccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHH
Q psy6577 2 EQLQMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNV 81 (96)
Q Consensus 2 ~~~~~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 81 (96)
+.+++|+|+++ ++|+.|+.+||++.++|+...++.+.....+.+..+...+.... .+..+|+.+.+.++|+|+||.++
T Consensus 113 ~~~~lG~gll~-~~g~~W~~~Rk~~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~vd~~~~~~~~tld~i~~~~ 190 (497)
T KOG0157|consen 113 LKPWLGDGLLF-SDGEKWHKHRKLLTPAFHFEILKSFVPVFIESSLILLLLLELAA-SGEEVDLQDLLKRLTLDIICKTA 190 (497)
T ss_pred HHHHhcCcccc-CCchHHHHHHhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCeEcHHHHHHHHHHHHHHHHh
Confidence 35788999999 88999999999999999999999999999999888877776643 23339999999999999999999
Q ss_pred hc
Q psy6577 82 LG 83 (96)
Q Consensus 82 fG 83 (96)
||
T Consensus 191 ~G 192 (497)
T KOG0157|consen 191 MG 192 (497)
T ss_pred cC
Confidence 99
No 10
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.35 E-value=8.3e-12 Score=80.71 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=69.0
Q ss_pred ccccccCCchHHHhhhhcC-CCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccccc
Q psy6577 9 GILTNVNTEVWKKQRKILT-PTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQIN 87 (96)
Q Consensus 9 ~~~~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 87 (96)
+++++.+|+.|+++|+++. ++|+.++++.+.+.+.+.+.++++.|.... .++++|+.+.+..+++|+|+.++||.++.
T Consensus 117 ~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~t~dvi~~~~fG~~~~ 195 (517)
T PLN02687 117 DLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQH-GTAPVNLGQLVNVCTTNALGRAMVGRRVF 195 (517)
T ss_pred eeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhc-CCCceeHHHHHHHHHHHHHHHHHhCcccc
Confidence 4444267999999999998 899999999999999999999999997643 45689999999999999999999999875
Q ss_pred C
Q psy6577 88 A 88 (96)
Q Consensus 88 ~ 88 (96)
.
T Consensus 196 ~ 196 (517)
T PLN02687 196 A 196 (517)
T ss_pred c
Confidence 4
No 11
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.28 E-value=2.1e-11 Score=78.53 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=67.7
Q ss_pred cccccCCchHHHhhhhcC-CCCChHHHhhHHHHHHHHHHHHHHHHHHHhh-cCCccchhHHHHHHHHHHHHHHHhccccc
Q psy6577 10 ILTNVNTEVWKKQRKILT-PTFHFKILHSYIQYFYEESQLLCNIIREEAQ-DGAETKTDMKLKLAGFDMIVRNVLGIQIN 87 (96)
Q Consensus 10 ~~~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 87 (96)
++. .+|+.|+++|+++. +.|+++.++.+.+.+.+.++++++.|.+... .++.+++.+.+..+++|+++.++||.+++
T Consensus 116 l~~-~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~~~~fG~~~~ 194 (503)
T PLN02394 116 VFT-VYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMYRMMFDRRFE 194 (503)
T ss_pred eec-CCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHHHHHhCCCcc
Confidence 455 78999999999986 8899999999999999999999999976432 24468999999999999999999999886
Q ss_pred C
Q psy6577 88 A 88 (96)
Q Consensus 88 ~ 88 (96)
.
T Consensus 195 ~ 195 (503)
T PLN02394 195 S 195 (503)
T ss_pred c
Confidence 4
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.28 E-value=2.3e-11 Score=78.38 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=68.0
Q ss_pred cCCchHHHhhhh-cCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcccccC
Q psy6577 14 VNTEVWKKQRKI-LTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQINA 88 (96)
Q Consensus 14 ~~g~~~~~~R~~-~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 88 (96)
.+|+.|+..|++ +.+.|+++.++.+.+.+.+.+.++++.|.+....++++|+.+.+..+++|+|+.++||.+++.
T Consensus 118 ~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~~~fG~~~~~ 193 (502)
T PLN02966 118 HYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQAFGKKYNE 193 (502)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHHHHhCCccCc
Confidence 568999999998 779999999999999999999999999987554566899999999999999999999998864
No 13
>PLN02971 tryptophan N-hydroxylase
Probab=99.23 E-value=7.1e-11 Score=76.88 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=64.2
Q ss_pred cccccCCchHHHhhhhcCC-CCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccccc
Q psy6577 10 ILTNVNTEVWKKQRKILTP-TFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQIN 87 (96)
Q Consensus 10 ~~~~~~g~~~~~~R~~~~~-~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 87 (96)
++. .+|+.|+++|+++.+ .+++...+.+.+.+.+.++.+++.+.+...+++++|+.+.+..+++|+|++++||.++.
T Consensus 145 l~~-~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 222 (543)
T PLN02971 145 VIT-PFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIKRLMFGTRTF 222 (543)
T ss_pred Eec-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhCCccc
Confidence 455 789999999999974 55666677788888888888888877654456689999999999999999999999874
No 14
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.23 E-value=8.2e-11 Score=75.77 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=67.6
Q ss_pred cCCchHHHhhhhc-CCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcccccCC
Q psy6577 14 VNTEVWKKQRKIL-TPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQINAQ 89 (96)
Q Consensus 14 ~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~ 89 (96)
..++.|+++|+.+ .+.|++++++.+.+.+.+.++++++.|.+...+++++|+.+.+..+++|+++.++||.+++..
T Consensus 117 ~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~ 193 (499)
T PLN03234 117 QYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQAFGKRYNEY 193 (499)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHHHHhCCccccc
Confidence 4578999999975 699999999999999999999999999876556778999999999999999999999988643
No 15
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.22 E-value=8.1e-11 Score=76.05 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=67.9
Q ss_pred ccccccCCchHHHhhhhcC-CCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcccc
Q psy6577 9 GILTNVNTEVWKKQRKILT-PTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQI 86 (96)
Q Consensus 9 ~~~~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 86 (96)
+++. .+|+.|+++|+++. +.|+.+.++.+.+.+.+.+..+++.+.+...+++++|+.+.+..+++|+|+.++||.++
T Consensus 115 ~l~~-~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~fg~~~ 192 (504)
T PLN00110 115 MVFA-DYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVILSRRV 192 (504)
T ss_pred eeeC-CCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHHhCCcc
Confidence 4555 78999999999998 57999999999999999999999998765446678999999999999999999999976
No 16
>KOG0159|consensus
Probab=99.22 E-value=1.4e-10 Score=74.17 Aligned_cols=83 Identities=14% Similarity=0.262 Sum_probs=74.9
Q ss_pred cccccccCCchHHHhhhhcCCCC-ChHHHhhHHHHHHHHHHHHHHHHHHHhh---cCCccchhHHHHHHHHHHHHHHHhc
Q psy6577 8 QGILTNVNTEVWKKQRKILTPTF-HFKILHSYIQYFYEESQLLCNIIREEAQ---DGAETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 8 ~~~~~~~~g~~~~~~R~~~~~~f-~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~vi~~~~fG 83 (96)
.|++. .+|+.|.+.|..+++.+ .++.++.|.+.+++.+.+++++++...+ ...+.|+.+.+.+++++.||.++||
T Consensus 140 ~Gl~~-~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~wslEsi~~V~l~ 218 (519)
T KOG0159|consen 140 CGLFL-LEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRWSLESICLVLLG 218 (519)
T ss_pred CCccc-CCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 48998 99999999999999774 8999999999999999999999988765 2347899999999999999999999
Q ss_pred ccccCCcC
Q psy6577 84 IQINAQRN 91 (96)
Q Consensus 84 ~~~~~~~~ 91 (96)
++.+++..
T Consensus 219 ~rlG~L~~ 226 (519)
T KOG0159|consen 219 TRLGLLGE 226 (519)
T ss_pred cccccccC
Confidence 99998765
No 17
>PLN02648 allene oxide synthase
Probab=99.21 E-value=2.8e-11 Score=77.84 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=68.0
Q ss_pred ccccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcccccC
Q psy6577 9 GILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQINA 88 (96)
Q Consensus 9 ~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 88 (96)
+++. .+|+.|+++|+++.+.|+ ..++.+.+.+.+.+..+++.|.....+++++|+.+.+..+++++++.++||.+.+.
T Consensus 117 s~~~-~~g~~H~r~Rrll~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~vdv~~~~~~lt~~vi~~~lfG~~~~~ 194 (480)
T PLN02648 117 SYLD-PSEPKHAKLKSFLFELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGKAEFNDPLDQMAFNFLCKALTGKDPSE 194 (480)
T ss_pred eecC-CCCchHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHcCCCcch
Confidence 4555 789999999999999998 47788999999999999999965433556799999999999999999999987654
No 18
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=75.52 Aligned_cols=74 Identities=26% Similarity=0.265 Sum_probs=65.5
Q ss_pred cCCchHHHhhhhc-CCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccccc
Q psy6577 14 VNTEVWKKQRKIL-TPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQIN 87 (96)
Q Consensus 14 ~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 87 (96)
.+|+.|+.+|+++ .+.|+.++++.+.+.+.+.++.+++.+......++++|+.+.+..+++++++.++||.++.
T Consensus 120 ~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~ 194 (514)
T PLN03112 120 PLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTRMLLGKQYF 194 (514)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHHHHcCCccc
Confidence 6899999999995 4789999999999999999999999876544356689999999999999999999999874
No 19
>PLN00168 Cytochrome P450; Provisional
Probab=99.20 E-value=1.5e-10 Score=74.98 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=65.6
Q ss_pred cCCchHHHhhh-hcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccccc
Q psy6577 14 VNTEVWKKQRK-ILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQIN 87 (96)
Q Consensus 14 ~~g~~~~~~R~-~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 87 (96)
.+|+.|+++|+ ++.++|+.++++.+.+.+.+.++.+++.|.+....+.++|+.+.+..++.++|+.++||.+++
T Consensus 126 ~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~~~~ 200 (519)
T PLN00168 126 SYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLLVLMCFGERLD 200 (519)
T ss_pred CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCcC
Confidence 56999999886 788999999999999999999999999998754444578999999999999999999999875
No 20
>KOG0156|consensus
Probab=99.19 E-value=1.2e-10 Score=75.08 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=69.7
Q ss_pred ccccccccCCchHHHhhhhcC-CCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccc
Q psy6577 7 GQGILTNVNTEVWKKQRKILT-PTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQ 85 (96)
Q Consensus 7 ~~~~~~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~ 85 (96)
+.|++++.+|+.|+.+||+.. ..++...++.......++++.+++++.. ...+.++|+.+.+..++.+||++++||.+
T Consensus 109 ~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~nvI~~~~fG~r 187 (489)
T KOG0156|consen 109 GKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVGNVICRMLFGRR 187 (489)
T ss_pred CCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHHHHHHHHHhCCc
Confidence 357888348999999999876 6678998999888888999999999887 22337999999999999999999999999
Q ss_pred ccCC
Q psy6577 86 INAQ 89 (96)
Q Consensus 86 ~~~~ 89 (96)
++..
T Consensus 188 f~~~ 191 (489)
T KOG0156|consen 188 FEEE 191 (489)
T ss_pred cccC
Confidence 9763
No 21
>PLN02500 cytochrome P450 90B1
Probab=99.16 E-value=1.4e-10 Score=74.68 Aligned_cols=77 Identities=10% Similarity=0.256 Sum_probs=64.1
Q ss_pred ccc-ccccccCCchHHHhhhhcCCCCChHHHhh-HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhc
Q psy6577 6 MGQ-GILTNVNTEVWKKQRKILTPTFHFKILHS-YIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 6 ~~~-~~~~~~~g~~~~~~R~~~~~~f~~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 83 (96)
+|. ++++ .+|+.|+.+|+++.+.|++.+++. +.+.+.+.+..+++.|. .+.++|+.+.+..+++|++++++||
T Consensus 120 ~g~~~~~~-~~g~~wr~~Rk~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~vd~~~~~~~~~~~vi~~~~fg 194 (490)
T PLN02500 120 LGKWSMLV-LVGDMHRDMRSISLNFLSHARLRTHLLKEVERHTLLVLDSWK----ENSTFSAQDEAKKFTFNLMAKHIMS 194 (490)
T ss_pred hCcccccc-cCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC----CCCCEEehHHHHHHHHHHHHHHHhC
Confidence 443 6777 899999999999999999988887 46677777777777764 3457899999999999999999999
Q ss_pred cccc
Q psy6577 84 IQIN 87 (96)
Q Consensus 84 ~~~~ 87 (96)
.+.+
T Consensus 195 ~~~~ 198 (490)
T PLN02500 195 MDPG 198 (490)
T ss_pred CCCC
Confidence 8754
No 22
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.15 E-value=5.8e-11 Score=74.50 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=73.6
Q ss_pred ccccccccccCCchHHHhhhhcCCCCChH-HHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhc
Q psy6577 5 QMGQGILTNVNTEVWKKQRKILTPTFHFK-ILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~~~R~~~~~~f~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 83 (96)
..+.++++ .+|+.|+..|+++.+.|+.. .+ .+.+.+.+.++.+++.|......++++|+.+.+..+++|+++.++||
T Consensus 82 ~~~~~l~~-~~~~~~~~~R~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG 159 (463)
T PF00067_consen 82 FGGKGLFF-SDGERWRRQRRLLAPAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLFG 159 (463)
T ss_dssp HTTTSSTT-SSHHHHHHHHHHHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccc-ccccccccccccccccccccccc-ccccccccccccccccccccccccceeeeeccccccccccccccccc
Confidence 45678888 88999999999999999888 66 89999999999999999987655558999999999999999999999
Q ss_pred ccccCC
Q psy6577 84 IQINAQ 89 (96)
Q Consensus 84 ~~~~~~ 89 (96)
.+++..
T Consensus 160 ~~~~~~ 165 (463)
T PF00067_consen 160 KDFGSL 165 (463)
T ss_dssp SHHHGT
T ss_pred ceeeec
Confidence 987643
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=99.15 E-value=2.6e-10 Score=74.23 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=63.1
Q ss_pred ccccccCCchHHHhhhhcCCCCC-hHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccccc
Q psy6577 9 GILTNVNTEVWKKQRKILTPTFH-FKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQIN 87 (96)
Q Consensus 9 ~~~~~~~g~~~~~~R~~~~~~f~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 87 (96)
+++++.+|+.|+.+|+++++.|. .+....+...+.+++.++++.+.+....+.++|+.+.+..+++|++++++||.+++
T Consensus 126 ~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 205 (534)
T PLN03018 126 SMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMRMLFGRRHV 205 (534)
T ss_pred ceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHHHHhCCccc
Confidence 46661359999999999998874 44445555566677889999987644345679999999999999999999999875
Q ss_pred C
Q psy6577 88 A 88 (96)
Q Consensus 88 ~ 88 (96)
.
T Consensus 206 ~ 206 (534)
T PLN03018 206 T 206 (534)
T ss_pred c
Confidence 4
No 24
>PLN02183 ferulate 5-hydroxylase
Probab=99.12 E-value=3.7e-10 Score=73.12 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=64.6
Q ss_pred cccccccCCchHHHhhhh-cCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcccc
Q psy6577 8 QGILTNVNTEVWKKQRKI-LTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQI 86 (96)
Q Consensus 8 ~~~~~~~~g~~~~~~R~~-~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~ 86 (96)
.+++. .+|+.|+++|++ +.++|+.+.++.+.+. .+.+..+++.|... .+.++|+.+.+..+++|+++.++||.+.
T Consensus 119 ~~l~~-~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~~--~~~~v~~~~~~~~~~~~vi~~~~fG~~~ 194 (516)
T PLN02183 119 DMAFA-HYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSSN--IGKPVNIGELIFTLTRNITYRAAFGSSS 194 (516)
T ss_pred ceEeC-CCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHhc--CCCcEeHHHHHHHHHHHHHHhHhhcCcc
Confidence 34555 789999999998 5789999999888875 46788899998642 4678999999999999999999999876
Q ss_pred cC
Q psy6577 87 NA 88 (96)
Q Consensus 87 ~~ 88 (96)
+.
T Consensus 195 ~~ 196 (516)
T PLN02183 195 NE 196 (516)
T ss_pred cc
Confidence 43
No 25
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.12 E-value=3.2e-10 Score=71.78 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=69.7
Q ss_pred cccccc-cccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHh
Q psy6577 4 LQMGQG-ILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVL 82 (96)
Q Consensus 4 ~~~~~~-~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~f 82 (96)
+.+|.+ +++ .+|+.|.++||+++++|+++.++.+.+.+.+.+.++++.+ . .+..+++.+.+..++++||+ .+|
T Consensus 84 ~~~~~~~ll~-~dg~~H~r~Rkl~~~~F~~~~~~~~~~~i~~~~~~~~~~~-~---~~~~~~v~~~a~~l~~~vi~-~l~ 157 (411)
T COG2124 84 PVLGDGSLLT-LDGPEHTRLRKLLAPAFTPRALRGYRPLIREIADRLLDDL-W---QGGADLVLDFAAELTLRVIA-ELL 157 (411)
T ss_pred hhccccceee-cCCHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHhc-c---cCCchhHHHHhhhhhHHHHH-HHh
Confidence 456665 667 9999999999999999999999999999999999999998 3 23778899999999999999 999
Q ss_pred cccccC
Q psy6577 83 GIQINA 88 (96)
Q Consensus 83 G~~~~~ 88 (96)
|.+.+.
T Consensus 158 Gv~~~~ 163 (411)
T COG2124 158 GVPLED 163 (411)
T ss_pred CCCHHH
Confidence 987754
No 26
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.10 E-value=2.8e-10 Score=72.84 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=66.9
Q ss_pred ccc-ccccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcc
Q psy6577 6 MGQ-GILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGI 84 (96)
Q Consensus 6 ~~~-~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~ 84 (96)
+|. ++++ .+|+.|+++|+++.+.|++++++.+.+.+.+.+.++++.|. ++++|+.+.+..+++++++.++||.
T Consensus 113 ~g~~~l~~-~~g~~w~~~Rk~l~~~f~~~~l~~~~~~i~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~v~~~~~fG~ 186 (463)
T PLN02196 113 LGKQAIFF-HQGDYHAKLRKLVLRAFMPDAIRNMVPDIESIAQESLNSWE-----GTQINTYQEMKTYTFNVALLSIFGK 186 (463)
T ss_pred cCcccccc-cCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHcCC-----CCeEEeHHHHHHHHHHHHHHHHcCC
Confidence 453 6777 89999999999999999999999999999999999988873 3478999999999999999999998
Q ss_pred cc
Q psy6577 85 QI 86 (96)
Q Consensus 85 ~~ 86 (96)
+.
T Consensus 187 ~~ 188 (463)
T PLN02196 187 DE 188 (463)
T ss_pred CC
Confidence 75
No 27
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.04 E-value=1.7e-09 Score=69.54 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=65.6
Q ss_pred cccc-cccccCCchHHHhhhhcCCCC-ChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhc
Q psy6577 6 MGQG-ILTNVNTEVWKKQRKILTPTF-HFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 6 ~~~~-~~~~~~g~~~~~~R~~~~~~f-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 83 (96)
+|.+ ++. .+|+.|+++|+++.+.| +++.++.+.+.+.+.+.++++.|.. ++.+|+.+.+..+++++++.++||
T Consensus 125 ~g~~~~~~-~~g~~w~~~R~~~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~----~~~v~~~~~~~~~~~~vi~~~~~G 199 (490)
T PLN02302 125 IGRKSFVG-ITGEEHKRLRRLTAAPVNGPEALSTYIPYIEENVKSCLEKWSK----MGEIEFLTELRKLTFKIIMYIFLS 199 (490)
T ss_pred hccccccc-cCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcC----CCCEehHHHHHHHHHHHHHHHHcC
Confidence 3433 455 78999999999999999 4788999999999999999988852 346999999999999999999999
Q ss_pred cccc
Q psy6577 84 IQIN 87 (96)
Q Consensus 84 ~~~~ 87 (96)
.+.+
T Consensus 200 ~~~~ 203 (490)
T PLN02302 200 SESE 203 (490)
T ss_pred CCCh
Confidence 8764
No 28
>PLN02655 ent-kaurene oxidase
Probab=98.99 E-value=3.5e-09 Score=67.90 Aligned_cols=79 Identities=6% Similarity=0.004 Sum_probs=64.5
Q ss_pred ccccc-CCchHHHhhhhcC-CCCChHHHhhHHHHHHHHHHHHHHHHHHHhh--cCCccchhHHHHHHHHHHHHHHHhccc
Q psy6577 10 ILTNV-NTEVWKKQRKILT-PTFHFKILHSYIQYFYEESQLLCNIIREEAQ--DGAETKTDMKLKLAGFDMIVRNVLGIQ 85 (96)
Q Consensus 10 ~~~~~-~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~vi~~~~fG~~ 85 (96)
++. . +|+.|+++|+.+. +.|+...++.+.+.+.+.++.+++.+..... .++++|+.+.+..+++|+++.++||.+
T Consensus 84 ~~~-~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~ 162 (466)
T PLN02655 84 VAT-SDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALGED 162 (466)
T ss_pred eee-CCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhccc
Confidence 444 4 4899999998665 5678888888999999999998888876533 356899999999999999999999998
Q ss_pred ccCC
Q psy6577 86 INAQ 89 (96)
Q Consensus 86 ~~~~ 89 (96)
++..
T Consensus 163 ~~~~ 166 (466)
T PLN02655 163 VESV 166 (466)
T ss_pred cccc
Confidence 7653
No 29
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=98.94 E-value=3e-09 Score=67.93 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=61.2
Q ss_pred ccccc-ccccccCCchHHHhhhhcCCCCChHHHhhH-HHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHH
Q psy6577 4 LQMGQ-GILTNVNTEVWKKQRKILTPTFHFKILHSY-IQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNV 81 (96)
Q Consensus 4 ~~~~~-~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 81 (96)
.++|. +++. .+|+.|++.|+++.+.|+...+... .+.+.+.+.++++.|. ++.++|+.+.+..+++++++.++
T Consensus 87 ~l~g~~~~~~-~~g~~wr~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vi~~~~ 161 (452)
T PLN03141 87 ELMGKSSILL-INGSLQRRVHGLIGAFLKSPHLKAQITRDMERYVSESLDSWR----DDPPVLVQDETKKIAFEVLVKAL 161 (452)
T ss_pred HHhCcccccc-cCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc----CCCCEEhHHHHHHHHHHHHHHHH
Confidence 34554 5777 8999999999999999987776653 4566666666665553 45689999999999999999999
Q ss_pred hcccc
Q psy6577 82 LGIQI 86 (96)
Q Consensus 82 fG~~~ 86 (96)
||.+.
T Consensus 162 ~G~~~ 166 (452)
T PLN03141 162 ISLEP 166 (452)
T ss_pred cCCCc
Confidence 99765
No 30
>PLN02774 brassinosteroid-6-oxidase
Probab=98.91 E-value=4.2e-09 Score=67.52 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=64.6
Q ss_pred ccc-ccccccCCchHHHhhhhcCCCCChHHHhh-HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhc
Q psy6577 6 MGQ-GILTNVNTEVWKKQRKILTPTFHFKILHS-YIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 6 ~~~-~~~~~~~g~~~~~~R~~~~~~f~~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 83 (96)
+|. +++. .+|+.|+.+|+++.+.|++..++. +.+.+.+.+.+++++|. .++++|+.+.+..+++++++.++||
T Consensus 108 lg~~~~~~-~~g~~w~~~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~g 182 (463)
T PLN02774 108 LGTCNIAA-VHGSTHRYMRGSLLSLISPTMIRDHLLPKIDEFMRSHLSGWD----GLKTIDIQEKTKEMALLSALKQIAG 182 (463)
T ss_pred hCccchhh-cCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhC----CCCCEEeeHHHHHHHHHHHHHHHcC
Confidence 444 5777 899999999999999999998886 68888888888888775 3357999999999999999999999
Q ss_pred ccc
Q psy6577 84 IQI 86 (96)
Q Consensus 84 ~~~ 86 (96)
.+.
T Consensus 183 ~~~ 185 (463)
T PLN02774 183 TLS 185 (463)
T ss_pred CCC
Confidence 764
No 31
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=98.50 E-value=5.8e-07 Score=58.07 Aligned_cols=76 Identities=11% Similarity=0.137 Sum_probs=52.1
Q ss_pred ccc-cccccccCCchHHHhhhhcCCCCChHHHhhHHH-HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHh
Q psy6577 5 QMG-QGILTNVNTEVWKKQRKILTPTFHFKILHSYIQ-YFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVL 82 (96)
Q Consensus 5 ~~~-~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~f 82 (96)
++| .|+++ ++|+.|+++|+++.+.++.+.+..+.. .+.+.+...++.|. +++++.+.+..++++++++++|
T Consensus 111 ~lg~~~l~~-~~g~~wr~~R~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~t~~vi~~~~f 183 (472)
T PLN02987 111 LLGKHSLLL-MKGNLHKKMHSLTMSFANSSIIKDHLLLDIDRLIRFNLDSWS------SRVLLMEEAKKITFELTVKQLM 183 (472)
T ss_pred HhCcccccc-cCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhhc------cceehHHHHHHHHHHHHHHHHc
Confidence 345 47888 899999999999765334445544332 12233333333331 3689999999999999999999
Q ss_pred ccccc
Q psy6577 83 GIQIN 87 (96)
Q Consensus 83 G~~~~ 87 (96)
|.+.+
T Consensus 184 g~~~~ 188 (472)
T PLN02987 184 SFDPG 188 (472)
T ss_pred CCCCh
Confidence 98654
No 32
>KOG0684|consensus
Probab=94.52 E-value=0.11 Score=34.14 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=59.0
Q ss_pred ccccccccccccCCchHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHH-HHHHhhcCCccchhHHHHHHHHHHHHHHH
Q psy6577 3 QLQMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNI-IREEAQDGAETKTDMKLKLAGFDMIVRNV 81 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 81 (96)
.+.||.|++...++.......+.+...+....++.+.+.+.++.++.++. |.+ .+..-.+...+..+.+.+--.+.
T Consensus 108 ~~vFg~~v~~d~~~~~~~e~~~~~k~~L~~~~lk~~~e~m~~el~~~f~~~~~~---s~~~d~l~~~~~~ii~tAs~~ll 184 (486)
T KOG0684|consen 108 TPVFGKGVVYDVPNHVMMEQKKFFKSALGGVALKSLVELMLEELHAYFETSLGE---SGETDGLYTFCRLIIFTASRLLL 184 (486)
T ss_pred hhhcCCCccccCCCchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhccccc---ccchhHhhhhhHHHhhhhHHHhh
Confidence 45678888864678888888888888999999999999999999988887 432 33333455555555555555555
Q ss_pred hcccccC
Q psy6577 82 LGIQINA 88 (96)
Q Consensus 82 fG~~~~~ 88 (96)
+|.....
T Consensus 185 ~~e~r~~ 191 (486)
T KOG0684|consen 185 GGEVRDQ 191 (486)
T ss_pred hhhhhhh
Confidence 6655444
No 33
>KOG4128|consensus
Probab=82.14 E-value=11 Score=24.38 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=48.8
Q ss_pred cCCchHHHh-----------hhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhh----cCCccchhHHHHHHHHHHHH
Q psy6577 14 VNTEVWKKQ-----------RKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQ----DGAETKTDMKLKLAGFDMIV 78 (96)
Q Consensus 14 ~~g~~~~~~-----------R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~vi~ 78 (96)
.||.+|.-. +++....++.++-+++..+......++...+..... .++..+..+.+..-.+.+||
T Consensus 143 ~DGGqw~MfvNlVkKYGviPKkcy~~sysT~atrkmN~iL~~KlREfa~~Lr~~~~~~~~~~~i~~t~~emm~eiFrvic 222 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKYGVIPKKCYLHSYSTQATRKMNLILKSKLREFASMLRAQFTFNGNGCRIPDTIQEMMPEIFRVIC 222 (457)
T ss_pred CCCchHHHHHHHHHHhCCCcHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHh
Confidence 357777653 345556677888888888887777777777766432 23345666666667777776
Q ss_pred HHHhccccc
Q psy6577 79 RNVLGIQIN 87 (96)
Q Consensus 79 ~~~fG~~~~ 87 (96)
+++|.+.+
T Consensus 223 -iclg~PPe 230 (457)
T KOG4128|consen 223 -ICLGEPPE 230 (457)
T ss_pred -hhcCCCcc
Confidence 67887764
No 34
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=71.93 E-value=12 Score=19.24 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=43.8
Q ss_pred CchHHHhhhhcC---CCCChHHHhhHH-----HHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHHHHHHHHHhc
Q psy6577 16 TEVWKKQRKILT---PTFHFKILHSYI-----QYFYEESQLLCNIIREEAQDGA-ETKTDMKLKLAGFDMIVRNVLG 83 (96)
Q Consensus 16 g~~~~~~R~~~~---~~f~~~~l~~~~-----~~i~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~vi~~~~fG 83 (96)
|..|+..-+-+. .+++...+.... .-..+.+-+++..|........ .-.+...+..+-++.+...++|
T Consensus 13 Gr~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~~ 89 (90)
T cd08780 13 GKKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLLG 89 (90)
T ss_pred hHHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHhc
Confidence 788999877776 447766665542 2378899999999987622222 2245556666666666555544
No 35
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=60.71 E-value=9.7 Score=22.43 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhcccccC
Q psy6577 68 KLKLAGFDMIVRNVLGIQINA 88 (96)
Q Consensus 68 ~~~~~~~~vi~~~~fG~~~~~ 88 (96)
+.--+++|.||.-+||.+++.
T Consensus 84 ~S~e~ALn~ictr~fG~DLdS 104 (202)
T PF01707_consen 84 YSPEVALNEICTRFFGVDLDS 104 (202)
T ss_dssp --HHHHHHHHHHHHHSS-GGG
T ss_pred cCHHHHHHHHHHHHhccccCc
Confidence 445789999999999999864
No 36
>PHA01327 hypothetical protein
Probab=48.44 E-value=6.5 Score=17.04 Aligned_cols=20 Identities=10% Similarity=0.375 Sum_probs=13.5
Q ss_pred cccc-cccccccCCchHHHhhh
Q psy6577 4 LQMG-QGILTNVNTEVWKKQRK 24 (96)
Q Consensus 4 ~~~~-~~~~~~~~g~~~~~~R~ 24 (96)
++.. ++++. -+|++|..+|.
T Consensus 7 ~ftkr~~vin-ehge~wqer~d 27 (49)
T PHA01327 7 PFTKRNNVIN-EHGEEWQERKD 27 (49)
T ss_pred cccccchHHH-hhHHHHHHHHH
Confidence 3443 35666 78999987775
No 37
>PF06167 Peptidase_M90: Glucose-regulated metallo-peptidase M90; InterPro: IPR010384 MtfA (earlier known as YeeI) is a transcription factor that binds Mlc (make large colonies), itself a repressor of glucose and hence a protein important in regulation of the phosphoenolpyruvate:glucose-phosphotransferase (PtsG) system, the major glucose transporter in Escherichia coli. Mlc is a repressor of ptsG, and MtfA is found to bind and inactivate Mlc with high affinity []. The membrane-bound protein EIICBGlc encoded by the ptsG gene is the major glucose transporter in E. coli. ; PDB: 3DL1_A 3KHI_A.
Probab=41.95 E-value=84 Score=19.46 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=19.7
Q ss_pred CccchhHHHHHHHHHHHHHHHhcccccCC
Q psy6577 61 AETKTDMKLKLAGFDMIVRNVLGIQINAQ 89 (96)
Q Consensus 61 ~~~d~~~~~~~~~~~vi~~~~fG~~~~~~ 89 (96)
+.+++++.++..+.-..|..+||.+....
T Consensus 66 ~glevtdemkl~IAa~Acll~l~~~~~~y 94 (253)
T PF06167_consen 66 GGLEVTDEMKLLIAAQACLLTLGLGLDWY 94 (253)
T ss_dssp TT----HHHHHHHHHHHHGGGTTT-GGGG
T ss_pred CCCcCCHHHHHHHHHHHHHHHcCCChhHh
Confidence 45889999999999999999999876543
No 38
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=35.05 E-value=19 Score=14.41 Aligned_cols=8 Identities=63% Similarity=1.078 Sum_probs=4.3
Q ss_pred CchHHHhh
Q psy6577 16 TEVWKKQR 23 (96)
Q Consensus 16 g~~~~~~R 23 (96)
+++|+.+|
T Consensus 19 N~eWk~lR 26 (30)
T PF11616_consen 19 NEEWKKLR 26 (30)
T ss_dssp HHHHHH--
T ss_pred HHHHHHhc
Confidence 46788776
No 39
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=34.01 E-value=84 Score=17.12 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhccccc
Q psy6577 41 YFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQIN 87 (96)
Q Consensus 41 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~ 87 (96)
.+...++.+..+++.... -...+.|.+-+..+|...+||.+..
T Consensus 48 FVGd~Ck~iaSRIR~aVa----~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 48 FVGDACKAIASRIRGAVA----SVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH----TSHHHHHHHHHHHHHHHHHSTS---
T ss_pred hHHHHHHHHHHHHHHHHh----cCcHHHHcccHHHHHHHHhcCCCCC
Confidence 344555555555554321 2445678999999999999998774
No 40
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=31.01 E-value=95 Score=16.85 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhcCCccchhHHHHHHHHH
Q psy6577 44 EESQLLCNIIREEAQDGAETKTDMKLKLAGFD 75 (96)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 75 (96)
..+-..+..++...++....|++..+..+++.
T Consensus 86 ~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~ 117 (125)
T PF14840_consen 86 EQLLQLLAQIDRAIKGNYQGDPWDELEQLSLL 117 (125)
T ss_dssp HHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 33444455555555455577888877776653
No 41
>PF07203 DUF1412: Protein of unknown function (DUF1412); InterPro: IPR009853 This family consists of several Caenorhabditis elegans proteins of around 70-75 residues in length. The function of this family is unknown.
Probab=30.00 E-value=23 Score=16.07 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.4
Q ss_pred chHHHhhhhcCCCCCh
Q psy6577 17 EVWKKQRKILTPTFHF 32 (96)
Q Consensus 17 ~~~~~~R~~~~~~f~~ 32 (96)
--|.+.++..+|.|++
T Consensus 34 lGWaQVph~~SPmfsP 49 (53)
T PF07203_consen 34 LGWAQVPHVYSPMFSP 49 (53)
T ss_pred cchhhCccccCccccc
Confidence 3499999999998876
No 42
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=27.96 E-value=1.4e+02 Score=17.94 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=26.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcc
Q psy6577 34 ILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGI 84 (96)
Q Consensus 34 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~ 84 (96)
....+.+...+++-++++.++ .+..-++.+.+.-+.+.|+.....+.
T Consensus 24 T~~SL~~yllEE~yEv~dAI~----~~d~~~l~EELGDlLlqVvfha~iae 70 (204)
T PRK12333 24 THESLRPYLLEEAAEAVDALS----EGDPQELAEELGDVLLQVAFHSVIAE 70 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777777766 23344555555555555555554443
No 43
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=27.84 E-value=56 Score=13.22 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=17.4
Q ss_pred CChHHHhhHHHHHHHHHHHHHHHHHH
Q psy6577 30 FHFKILHSYIQYFYEESQLLCNIIRE 55 (96)
Q Consensus 30 f~~~~l~~~~~~i~~~~~~~~~~~~~ 55 (96)
++.+.+.++.+.-.+.+.+.+.++.+
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~ 28 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLER 28 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35566777777778888888888765
No 44
>PHA03231 glycoprotein BALF4; Provisional
Probab=25.14 E-value=1.9e+02 Score=21.58 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcccccC
Q psy6577 41 YFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQINA 88 (96)
Q Consensus 41 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 88 (96)
.|.+..+++.+.|-.. +.+...++..+.++-...|++.++|++...
T Consensus 446 ~IN~~L~~ia~AWC~~--Q~R~~~vw~ELsKINPssvmSaiygrpVsA 491 (829)
T PHA03231 446 HINDMLGRLAEAWCLL--QNRELTVWHELSKINPSSIMSAIYGRPVAA 491 (829)
T ss_pred HHHHHHHHHHHHHHHh--hHHHHHHHHHHhcCChHHHHHHHhCCeeeh
Confidence 3445555555555443 556788999999999999999999988754
No 45
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=22.51 E-value=1.3e+02 Score=17.41 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=41.0
Q ss_pred CchHHHhhhhcCCCCChHHHhhHHHH--HHHHHHHHHHHHHHHhh--cCCccchhHHHHHHHHHHHH
Q psy6577 16 TEVWKKQRKILTPTFHFKILHSYIQY--FYEESQLLCNIIREEAQ--DGAETKTDMKLKLAGFDMIV 78 (96)
Q Consensus 16 g~~~~~~R~~~~~~f~~~~l~~~~~~--i~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~vi~ 78 (96)
|..-+.+-|+..+.++.+.+..++++ -..++..++..++.... .+.+++.......+..++.-
T Consensus 46 g~~~~i~p~Vvd~ghh~rrL~rLTGLdv~E~QArrlLndi~~yra~~~~~~~~~e~aAh~Wl~~vfe 112 (165)
T PF13224_consen 46 GTRLRIQPKVVDAGHHRRRLLRLTGLDVQENQARRLLNDIDSYRAQEDGRDVDEEEAAHDWLTEVFE 112 (165)
T ss_pred CCEEEEEeeEeCCcHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHH
Confidence 44444445666677878888888764 55668888888887543 34567776666666655543
No 46
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=22.08 E-value=1.1e+02 Score=14.39 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=19.8
Q ss_pred CCCChHHHhhHHHHHHHHHHHHHHHH
Q psy6577 28 PTFHFKILHSYIQYFYEESQLLCNII 53 (96)
Q Consensus 28 ~~f~~~~l~~~~~~i~~~~~~~~~~~ 53 (96)
..++.+.++.....+.+..+.+++.|
T Consensus 40 G~l~~k~l~~i~~~i~~~~~~l~~~W 65 (66)
T PF13711_consen 40 GFLPRKELRKILEWIEENQEELLEEW 65 (66)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577778888888888888888776
No 47
>PHA02943 hypothetical protein; Provisional
Probab=21.99 E-value=1.8e+02 Score=16.86 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=35.6
Q ss_pred chHHHhhhhcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHhcccccC
Q psy6577 17 EVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDMIVRNVLGIQINA 88 (96)
Q Consensus 17 ~~~~~~R~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 88 (96)
+.|+..|.-=....+|..+..+.. -.-++.++..++- |+|-....-.--++....+.+|.++.-
T Consensus 82 elwrlv~s~~~kfi~p~~l~~li~-kd~~a~~~~ak~v-------~v~~r~a~il~fln~~l~~l~gep~~k 145 (165)
T PHA02943 82 ELWRLVCNSRLKFITPSRLLRLIA-KDTEAHNIFAKYV-------PVNSRHAHILSFLNSALEMLYGEPYDK 145 (165)
T ss_pred HHHHHHHhccccccChHHHHHHHH-hCHHHHHHHHHhc-------CcccchHHHHHHHHHHHHHHhCCCccc
Confidence 456665553233345555444321 1223444444433 566665555566788889999998864
No 48
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=21.36 E-value=55 Score=14.73 Aligned_cols=17 Identities=29% Similarity=0.796 Sum_probs=14.3
Q ss_pred CchHHHhhhhcCCCCCh
Q psy6577 16 TEVWKKQRKILTPTFHF 32 (96)
Q Consensus 16 g~~~~~~R~~~~~~f~~ 32 (96)
++.|+-.|...+|.|+.
T Consensus 28 ~~~W~mr~~~~Sp~yTT 44 (52)
T PF13438_consen 28 RRSWKMRREMLSPRYTT 44 (52)
T ss_pred CcchHHHHHhcCCCCcC
Confidence 47899999999998864
No 49
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=20.86 E-value=2.6e+02 Score=18.41 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=21.3
Q ss_pred cCCCCChHHHhhHHHHHHHHHHHHHHHHHHH
Q psy6577 26 LTPTFHFKILHSYIQYFYEESQLLCNIIREE 56 (96)
Q Consensus 26 ~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~ 56 (96)
+....+..+.+.|..+|.++++++..-.++.
T Consensus 157 Le~~lpd~~~~~lt~lIieE~DRl~~LVDRm 187 (363)
T COG3852 157 LERALPDEALRELTQLIIEEADRLRNLVDRL 187 (363)
T ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555567888999999888876655554
Done!