RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6577
(96 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 79.6 bits (197), Expect = 3e-19
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKT 65
GQG+++ N E W KQR+++ F L S ++ F E+++ L I+ +A
Sbjct: 73 FGQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTP--V 130
Query: 66 DMK--LKLAGFDMIVRNVLGIQINAQRNP 92
M+ L D++ + G++ +
Sbjct: 131 SMQDMLTYTAMDILAKAAFGMETSMLLGA 159
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 77.0 bits (190), Expect = 2e-18
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKT 65
+GI+ N N E+WK R L + E + + + E +
Sbjct: 128 HEKGIIFNNNPELWKTTRPFFMKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGY--V 185
Query: 66 DMK--LKLAGFDMIVRNVLGIQINAQ 89
D+ L+ D L I ++
Sbjct: 186 DVLTLLRRVMLDTSNTLFLRIPLDES 211
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 61.9 bits (151), Expect = 5e-13
Identities = 8/92 (8%), Positives = 25/92 (27%), Gaps = 8/92 (8%)
Query: 7 GQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAET--- 63
G+G+ ++Q L +++ E + +
Sbjct: 84 GEGVAYAAPYPRMREQLNFLAEELTIAKFQNFVPAIQHEVR---KFMAANWDKDEGEINL 140
Query: 64 KTDMKLKLAGFDMIVRNVLGIQINAQRNPRMY 95
D + + + + G + + + R +
Sbjct: 141 LEDCST-MI-INTACQCLFGEDLRKRLDARRF 170
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 61.5 bits (150), Expect = 6e-13
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 6 MGQGILT-NVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGA-ET 63
G G+ T + + WKK IL P+F + + Y + + L D E
Sbjct: 82 AGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEV 141
Query: 64 KTDMKLKLAGFDMIVRNVLGIQINAQRNPRM 94
DM L D I + N+ +
Sbjct: 142 PEDMTR-LT-LDTIGLCGFNYRFNSFYRDQP 170
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 61.2 bits (149), Expect = 8e-13
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 7 GQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTD 66
+G+ T N + ++QR+ + P F + +Y EE+ L E Q G
Sbjct: 101 KEGVATA-NGPLHRRQRRTIQPAFRLDAIPAYGPIMEEEAHALT----ERWQPGKTVDAT 155
Query: 67 MKLKLAGFDMIVRNVLGIQINAQRNPRM 94
+ + R +L Q +R R+
Sbjct: 156 SESFRVAVRVAARCLLRGQYMDERAERL 183
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 58.5 bits (142), Expect = 8e-12
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 7 GQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTD 66
G+G+ +V V+ +Q+K+L + ++ +E++ E + E
Sbjct: 92 GKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYF----ESWGESGEKNVF 147
Query: 67 MKLKLAGFDMIVRNVLGIQINAQRN 91
L + G +I +Q N
Sbjct: 148 EALSELIILTASHCLHGKEIRSQLN 172
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 56.1 bits (136), Expect = 6e-11
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKT 65
G+G+LT E WK+ RK L F K + Y + EE++ R E +D
Sbjct: 75 TGRGLLT-DWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDH--- 130
Query: 66 DMKLKLAGFDMIVRNVLGIQINAQR 90
+M L+ ++ R + G ++
Sbjct: 131 EMLA-LS-LRLLGRALFGKPLSPSL 153
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 52.7 bits (127), Expect = 8e-10
Identities = 6/89 (6%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKT 65
G+G++ + +++ + + + + ++ + + + + E
Sbjct: 83 FGEGVVFDA--SPERRKEMLHNAALRGEQMKGHAATIEDQVRRMI----ADWGEAGEIDL 136
Query: 66 DMKLKLAGFDMIVRNVLGIQINAQRNPRM 94
++G + Q + R
Sbjct: 137 LDFFAELTIYTSSACLIGKKFRDQLDGRF 165
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 47.7 bits (114), Expect = 5e-08
Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 7 GQGILTNVNTEVWKKQRKILTPT-FHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKT 65
+ + WKK R L + +++ S+ +++ +
Sbjct: 95 RPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNY 154
Query: 66 --DMK--LKLAGFDMIVRNVLGIQINAQRNP 92
D+ L F+ I + G +
Sbjct: 155 SGDISDDLFRFAFESITNVIFGERQGMLEEV 185
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 46.5 bits (111), Expect = 1e-07
Identities = 9/94 (9%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
Query: 2 EQLQMGQGILTNVNTEVWKKQRKILTPTF-HFKILHSYIQYFYEESQLLCNIIREEAQDG 60
+ G++ + + W++ R + + E + E +
Sbjct: 107 DHRNEAYGLMI-LEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDER 165
Query: 61 AETKTDMK--LKLAGFDMIVRNVLGIQINAQRNP 92
D+ L F+ I + + +
Sbjct: 166 GRI-PDLYSELNKWSFESICLVLYEKRFGLLQKE 198
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 44.2 bits (105), Expect = 8e-07
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAE--T 63
+G L E+ + +RKIL F + L SY+ Q E+ E
Sbjct: 88 LGPNALATQMGEIHRSRRKILYQAFLPRTLDSYLPKMDGIVQGYL----EQWGKANEVIW 143
Query: 64 KTDMKLKLAGFDMIVRNVLGIQINAQR 90
++ ++ FD+ +G +++
Sbjct: 144 YPQLR-RMT-FDVAATLFMGEKVSQNP 168
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 42.4 bits (100), Expect = 4e-06
Identities = 9/93 (9%), Positives = 28/93 (30%), Gaps = 3/93 (3%)
Query: 7 GQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEE-SQLLCNIIREEAQDGAETKT 65
G + ++ + T L+S + E +++ + ++ A
Sbjct: 93 GHRSIDPMDGNTTENINDTFIKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTE 152
Query: 66 DMK--LKLAGFDMIVRNVLGIQINAQRNPRMYL 96
M F+ + G + + + ++
Sbjct: 153 GMYSFCYRVMFEAGYLTIFGRDLTRRDTQKAHI 185
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 41.4 bits (97), Expect = 7e-06
Identities = 9/80 (11%), Positives = 20/80 (25%)
Query: 15 NTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGF 74
+E ++ K L + F L + + +E + F
Sbjct: 132 PSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAF 191
Query: 75 DMIVRNVLGIQINAQRNPRM 94
+ + R G +
Sbjct: 192 NFLARAFYGTNPADTKLKAD 211
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 39.1 bits (92), Expect = 6e-05
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 11 LTNVNTEVWKKQRKILTPTF-------HFKILHSYIQYFYEESQLLCNIIREEAQDGAET 63
++ E WK+ R +L+PTF I+ Y +L +R EA+ G
Sbjct: 96 ISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQY-------GDVLVRNLRREAETGKP- 147
Query: 64 KTDMKLKLAGF--DMIVRNVLGIQINAQRNP 92
+K + D+I G+ I++ NP
Sbjct: 148 -VTLKDVFGAYSMDVITSTSFGVNIDSLNNP 177
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 37.8 bits (88), Expect = 2e-04
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEE 45
+GQG + ++ E + ++++ + + + Q F E
Sbjct: 78 LGQGGVQGLDGETHRHRKQMFMGLMTPERVRALAQLFEAE 117
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 37.5 bits (87), Expect = 2e-04
Identities = 8/83 (9%), Positives = 20/83 (24%), Gaps = 1/83 (1%)
Query: 13 NVNTEVWKKQRKILTPTFHFKILHSYIQYFYEE-SQLLCNIIREEAQDGAETKTDMKLKL 71
+ ++ + T + L + + Y +L E E
Sbjct: 101 QLPHYSPSDEKARMKLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYS 160
Query: 72 AGFDMIVRNVLGIQINAQRNPRM 94
+ GI+ + +
Sbjct: 161 FLLRAGYLTLYGIEALPRTHESQ 183
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 36.6 bits (85), Expect = 5e-04
Identities = 5/74 (6%), Positives = 16/74 (21%), Gaps = 4/74 (5%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKT 65
G + ++ ++ + + EE + + E
Sbjct: 79 FGVNAIQGMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAA----VTRWEKADEVVL 134
Query: 66 DMKLKLAGFDMIVR 79
+ K +
Sbjct: 135 FEEAKEILCRVACY 148
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 34.9 bits (81), Expect = 0.001
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTF-HF--------KILHSYIQYFYEESQLLCN 51
+ G+ + +E WK QR+ +F ++L ++ E++ L
Sbjct: 83 FRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVL---SEARELVA 139
Query: 52 IIREEAQDGA 61
++ + DGA
Sbjct: 140 LLVRGSADGA 149
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 34.1 bits (79), Expect = 0.003
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 5 QMGQGILTNVNTEVWKKQRKILTPTFHF---KILHSYIQYFYEESQLLCNIIREEA 57
Q Q I + +WK +K+ + ++ + +Q C +R +A
Sbjct: 103 QRCQDISLGDYSLLWKAHKKLTRSALLLGTRSSMEPWVD---QLTQEFCERMRVQA 155
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 31.7 bits (73), Expect = 0.018
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 5 QMGQGILTNVNTEVWKKQRKILTPTF-HF----KILHSYIQYFYEESQLLCNIIREEA 57
+GI + W+ R++ TF F + L I +E LC+++
Sbjct: 89 NNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIIC---QEISTLCDMLATHN 143
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 31.8 bits (73), Expect = 0.020
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTF-HF----KILHSYIQYFYEESQLLCNIIRE 55
++ G+L + W R++ +F +F K S I EE++ + I
Sbjct: 89 FMKMTKMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFESKIL---EETKFFNDAIET 145
Query: 56 E 56
Sbjct: 146 Y 146
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 29.8 bits (68), Expect = 0.094
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTF-HF----KILHSYIQYFYEESQLLCNIIRE 55
E+ G GI+ + N + WK+ R+ T +F + + +Q EE++ L +R+
Sbjct: 86 AERANRGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQ---EEARCLVEELRK 141
Query: 56 E 56
Sbjct: 142 T 142
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 29.5 bits (67), Expect = 0.13
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTF-HF----KILHSYIQYFYEESQLLCNIIRE 55
++ + G G++ N E W+ R+ T F + + IQ EE++ L +R+
Sbjct: 85 VDPIFQGYGVIFA-NGERWRALRRFSLATMRDFGMGKRSVEERIQ---EEARCLVEELRK 140
Query: 56 E 56
Sbjct: 141 S 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.13
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 24/115 (20%)
Query: 3 QLQ-MGQGILTN--VNTEVWKKQRKILTPTFHFKILH-------SYIQYFYEES-----Q 47
Q Q MG + +VW + T+ F IL + +F E +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 48 LLCNIIREEAQDGAETKTDMKLKLAGFDMIV------RNVLGIQINAQRNPRMYL 96
+I E DG + KT+ K + +L Q P + L
Sbjct: 1687 NYSAMIFETIVDG-KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--PALTL 1738
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 29.4 bits (67), Expect = 0.15
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 3 QLQMGQGILTNVNTEVWKKQRKILTPTF-HF----KILHSYIQYFYEESQLLCNIIREE 56
+GI+ N N WK R+ T ++ + S IQ E+ L +R+
Sbjct: 86 HAHRDRGIIFN-NGPTWKDIRRFSLTTLRNYGMGKQGNESRIQ---REAHFLLEALRKT 140
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 29.1 bits (66), Expect = 0.18
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 7 GQGILTNVNTEVWKKQRKILTPTF-HF----KILHSYIQYFYEESQLLCNIIREE 56
QG+ W++QR+ T + K L ++ EE+ LC
Sbjct: 94 SQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVT---EEAACLCAAFANH 145
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 28.7 bits (65), Expect = 0.21
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTF-HF----KILHSYIQYFYEESQLLCNIIRE 55
+ + G G++ + N E K+ R+ T F + + IQ EE+ L + +R
Sbjct: 85 FDWVFKGYGVVFS-NGERAKQLRRFSIATLRDFGVGKRGIEERIQ---EEAGFLIDALRG 140
Query: 56 E 56
Sbjct: 141 T 141
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 28.3 bits (63), Expect = 0.36
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 17 EVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLAGFDM 76
+ K + P F ++L + E A++G D+ + A F
Sbjct: 128 FMLKNSSNRVIPQFETTY-----------TELFEGLEAELAKNGKAAFNDVGEQAA-FRF 175
Query: 77 IVRNVLGIQINAQRNPRM 94
+ R +
Sbjct: 176 LGRAYFNSNPEETKLGTS 193
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 27.5 bits (62), Expect = 0.63
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 16/69 (23%)
Query: 1 MEQLQMGQG-ILTNVNTEVWKKQRKILTPTFH------------FKILHSYIQYFYEESQ 47
+ GQ + + VW +R++ + L ++ +E++
Sbjct: 90 STLITDGQSLTFSTDSGPVWAARRRLAQNALNTFSIASDPASSSSCYLEEHVS---KEAK 146
Query: 48 LLCNIIREE 56
L + ++E
Sbjct: 147 ALISRLQEL 155
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A
{Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D*
2q9q_D*
Length = 219
Score = 24.3 bits (52), Expect = 8.3
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 35 LHSYIQYFYEESQLLCNIIREEAQDGAET 63
LH +FY L + E D +++
Sbjct: 112 LHKMGPHFYGFGSQLLHFDSPENADISQS 140
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 24.3 bits (52), Expect = 9.2
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 61 AETKTDMKLKLAGFDMIVRNVLG----IQINA 88
+ + + L G D+I+ N G I INA
Sbjct: 278 RALRQALGVSLFGIDIIINNQTGQHAVIDINA 309
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.396
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,391,763
Number of extensions: 67289
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 34
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)