RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6577
(96 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 44.7 bits (104), Expect = 3e-07
Identities = 20/96 (20%), Positives = 37/96 (38%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDG 60
+ + ++ E WK+ R +L+PTF L + + +L +R EA+ G
Sbjct: 81 FGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETG 140
Query: 61 AETKTDMKLKLAGFDMIVRNVLGIQINAQRNPRMYL 96
D+I G+ I++ NP+
Sbjct: 141 KPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPF 176
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 35.0 bits (79), Expect = 6e-04
Identities = 3/50 (6%), Positives = 12/50 (24%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIRE 55
G + ++ ++ + + EE + +
Sbjct: 74 FGVNAIQGMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEK 123
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 34.3 bits (77), Expect = 0.001
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 1/96 (1%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDG 60
++ + G G++ N E W+ R+ T + + + C + G
Sbjct: 77 VDPIFQGYGVIF-ANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKG 135
Query: 61 AETKTDMKLKLAGFDMIVRNVLGIQINAQRNPRMYL 96
A + ++I V G + + + + L
Sbjct: 136 ALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRL 171
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 33.2 bits (74), Expect = 0.003
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCN 51
G ++ + + RK+LTP F + + +
Sbjct: 89 QFVGQISTYDPPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLD 134
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 30.5 bits (67), Expect = 0.020
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREE 56
G+G+LT E WK+ RK L F K + Y + EE++ R E
Sbjct: 75 TGRGLLT-DWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGE 124
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 30.5 bits (67), Expect = 0.025
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 1/96 (1%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIREEAQDG 60
E+ G GI+ + N + WK+ R+ T + + + C +
Sbjct: 78 AERANRGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKA 136
Query: 61 AETKTDMKLKLAGFDMIVRNVLGIQINAQRNPRMYL 96
+ L A ++I + + + + + L
Sbjct: 137 SPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNL 172
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 25.9 bits (55), Expect = 0.81
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 6 MGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCNIIRE 55
G+ +LT V+ ++ R ++ + + E + L + +
Sbjct: 81 PGRSMLT-VDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPA 129
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 25.5 bits (54), Expect = 1.4
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 5 QMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCN 51
+ G L + + + R+ LTP F + + Y + +
Sbjct: 78 RELVGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLD 124
>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial
F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 47
Score = 22.8 bits (49), Expect = 3.3
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 37 SYIQYFYEESQLLCNIIREEAQDGAETKTDMKLKLA 72
SYI+Y ++ + + ++ E + A + +K+
Sbjct: 10 SYIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIV 45
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 24.0 bits (50), Expect = 3.8
Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 1 MEQLQMGQGILTNVNTEVWKKQRKILTPTFHFKILHSYIQYFYEESQLLCN 51
+ + + T +K R+++ P F + + + L +
Sbjct: 72 LALWVAVENMFT-AYGPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVD 121
>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 23.2 bits (50), Expect = 4.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 35 LHSYIQYFYEESQLLCNIIREEAQDGAET 63
LH +FY L + E D +++
Sbjct: 22 LHKMGPHFYGFGSQLLHFDSPENADISQS 50
>d1b25a2 d.152.1.1 (A:1-210) Formaldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 210
Score = 23.1 bits (50), Expect = 6.2
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 67 MKLKLAGFDMIV 78
+ L+ AG+D +V
Sbjct: 99 VHLRRAGYDALV 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.396
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 343,456
Number of extensions: 13431
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 18
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)