BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6580
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/385 (40%), Positives = 212/385 (55%), Gaps = 31/385 (8%)
Query: 122 DKERFDCFP--NGQVTEESCTARGCCWSISNNSKVPACFYPHGLQSYKVVHIDKHSYGLD 179
D+E+ DC+P NG + E+CTARGC W SN+S VP C++ + L S V + H D
Sbjct: 9 DEEKIDCYPDENG-ASAENCTARGCIWEASNSSGVPFCYFVNDLYSVSDVQYNSHGATAD 67
Query: 180 VYWKNTIKSPY--GSDVQMLQMSVKFETVQRLHVKITDANATRYE-------PSFP---- 226
+ K+++ + + V L++ V + + L KI D N RYE PS P
Sbjct: 68 ISLKSSVYANAFPSTPVNPLRLDVTYHKNEMLQFKIYDPNKNRYEVPVPLNIPSMPSSTP 127
Query: 227 -----EVPMFNN------RVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIYGLGE-- 273
+V + N R KS + L GF +S+ FI+IS+RL S Y+YG GE
Sbjct: 128 EGQLYDVLIKKNPFGIEIRRKSTGTIIWDSQLLGFTFSDMFIRISTRLPSKYLYGFGETE 187
Query: 274 HRNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIV 333
HR+ + D +W T ++ D PP N YG HP+Y+ L G AHGV L SNA+++
Sbjct: 188 HRS-YRRDLEWHTWGMFSRDQPPGYKKNSYGVHPYYMGLE-EDGSAHGVLLLNSNAMDVT 245
Query: 334 LQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNL 393
QP PA+TYR GG+LDFY FLGP P V QY +LIG P + PYWSLGF LCRYGY+N
Sbjct: 246 FQPLPALTYRTTGGVLDFYVFLGPTPELVTQQYTELIGRPVMVPYWSLGFQLCRYGYQND 305
Query: 394 SHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAKPFYGLKEYVQDLHKEGRHFIPIL 453
S I S+ D V A IP D + DIDYMER +F L+ F G + + +G I IL
Sbjct: 306 SEIASLYDEMVAAQIPYDVQYSDIDYMERQLDFTLSPKFAGFPALINRMKADGMRVILIL 365
Query: 454 DPGVASREDSNYLPYVEGVEKGIFV 478
DP ++ E Y + GVE +F+
Sbjct: 366 DPAISGNETQPYPAFTRGVEDDVFI 390
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/398 (38%), Positives = 221/398 (55%), Gaps = 39/398 (9%)
Query: 120 VPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYPHGLQSYKVVHIDKHSYGLD 179
V + ER +C P+ T+ +C RGCCW+ VP C+Y + ++ + G
Sbjct: 7 VNELERINCIPDQPPTKATCDQRGCCWNPQGAVSVPWCYYSKNHSYHVEGNLVNTNAGFT 66
Query: 180 VYWKNTIKSP-YGSDVQMLQMSVKFETVQRLHVKITDANATRYEPSFPEVPMF------- 231
KN SP +GS+V + ++ +++T R H K+TD R+E V F
Sbjct: 67 ARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLTDQTNNRFEVPHEHVQSFSGNAAAS 126
Query: 232 --------------------NNRVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIYGL 271
NNRV LFDS ++G ++++QF+Q+S+RL S +YGL
Sbjct: 127 LTYQVEISRQPFSIKVTRRSNNRV-----LFDS-SIGPLLFADQFLQLSTRLPSTNVYGL 180
Query: 272 GEH-RNQFLLDTDWKTIVLWPLDGPPQ-DGVNGYGYHPFYLNLNASSGLAHGVFLRTSNA 329
GEH Q+ D +WKT ++ D P +G N YG F+L L +SGL+ GVFL SNA
Sbjct: 181 GEHVHQQYRHDMNWKTWPIFNRDTTPNGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNA 240
Query: 330 LEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYG 389
+E+VLQP PAITYR +GGILDFY FLG P V+ +YL+LIG P LP YW+LGFHL RY
Sbjct: 241 MEVVLQPAPAITYRTIGGILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYE 300
Query: 390 YKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRH 448
Y L +++ VV+RN A +P D DIDYM+ +F + F G E+V +LH G+
Sbjct: 301 YGTLDNMREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSVDFKGFPEFVNELHNNGQK 360
Query: 449 FIPILDPGVASREDSN--YLPYVEGVEKGIFVMNSSGL 484
+ I+DP +++ S+ Y PY G + I+V +S G+
Sbjct: 361 LVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGV 398
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/398 (38%), Positives = 221/398 (55%), Gaps = 39/398 (9%)
Query: 120 VPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYPHGLQSYKVVHIDKHSYGLD 179
V + ER +C P+ T+ +C RGCCW+ VP C+Y + ++ + G
Sbjct: 7 VNELERINCIPDQPPTKATCDQRGCCWNPQGAVSVPWCYYSKNHSYHVEGNLVNTNAGFT 66
Query: 180 VYWKNTIKSP-YGSDVQMLQMSVKFETVQRLHVKITDANATRYEPSFPEVPMF------- 231
KN SP +GS+V + ++ +++T R H K+TD R+E V F
Sbjct: 67 ARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLTDQTNNRFEVPHEHVQSFSGNAAAS 126
Query: 232 --------------------NNRVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIYGL 271
NNRV LFDS ++G ++++QF+Q+S+RL S +YGL
Sbjct: 127 LTYQVEISRQPFSIKVTRRSNNRV-----LFDS-SIGPLLFADQFLQLSTRLPSTNVYGL 180
Query: 272 GEH-RNQFLLDTDWKTIVLWPLDGPPQ-DGVNGYGYHPFYLNLNASSGLAHGVFLRTSNA 329
GEH Q+ D +WKT ++ D P +G N YG F+L L +SGL+ GVFL SNA
Sbjct: 181 GEHVHQQYRHDMNWKTWPIFNRDTTPNGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNA 240
Query: 330 LEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYG 389
+E+VLQP PAITYR +GGILDFY FLG P V+ +YL+LIG P LP YW+LGFHL RY
Sbjct: 241 MEVVLQPAPAITYRTIGGILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYE 300
Query: 390 YKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRH 448
Y L +++ VV+RN A +P D DIDYM+ +F + F G E+V +LH G+
Sbjct: 301 YGTLDNMREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSVDFKGFPEFVNELHNNGQK 360
Query: 449 FIPILDPGVASREDSN--YLPYVEGVEKGIFVMNSSGL 484
+ I+DP +++ S+ Y PY G + I+V +S G+
Sbjct: 361 LVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGV 398
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 247 bits (631), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 215/397 (54%), Gaps = 37/397 (9%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP--HGLQSYKVVHIDKHSY 176
N P R +C P TE C RGCCW N+S +P CF+ HG Y V + S
Sbjct: 35 NDPVNVRINCIPEQFPTEGICAQRGCCWRPWNDSLIPWCFFVDNHG---YNVQDMTTTSI 91
Query: 177 GLDVYWKNTIKSP--YGSDVQMLQMSVKFETVQRLHVKITDANATRYEPSFPEVPMFNNR 234
G++ N I SP +G+D+ + + + +T R KITD N RYE V F
Sbjct: 92 GVEAK-LNRIPSPTLFGNDINSVLFTTQNQTPNRFRFKITDPNNRRYEVPHQYVKEFTGP 150
Query: 235 VKSVDCLFDSR----------------------NLGGFMYSNQFIQISSRLSSPYIYGLG 272
S D L+D + ++G +YS+Q++QIS+RL S YIYG+G
Sbjct: 151 TVS-DTLYDVKVAQNPFSIQVIRKSNGKTLFDTSIGPLVYSDQYLQISARLPSDYIYGIG 209
Query: 273 EH-RNQFLLDTDWKTIVLWPLDGPPQDGVNG-YGYHPFYLNLNASSGLAHGVFLRTSNAL 330
E +F D WKT ++ D P D N YG+ F++ + +SG + GVFL SNA+
Sbjct: 210 EQVHKRFRHDLSWKTWPIFTRDQLPGDNNNNLYGHQTFFMCIEDTSGKSFGVFLMNSNAM 269
Query: 331 EIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGY 390
EI +QPTP +TYRV GGILDFY LG P V+ QY L+G P +P YW+LGF L R+ Y
Sbjct: 270 EIFIQPTPIVTYRVTGGILDFYILLGDTPEQVVQQYQQLVGLPAMPAYWNLGFQLSRWNY 329
Query: 391 KNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAK-PFYGLKEYVQDLHKEGRHF 449
K+L ++ VV RN +AGIP DT DIDYME +F + F GL ++VQDLH G+ +
Sbjct: 330 KSLDVVKEVVRRNREAGIPFDTQVTDIDYMEDKKDFTYDQVAFNGLPQFVQDLHDHGQKY 389
Query: 450 IPILDPGVASREDSN---YLPYVEGVEKGIFVMNSSG 483
+ ILDP ++ +N Y Y G + +++ S G
Sbjct: 390 VIILDPAISIGRRANGTTYATYERGNTQHVWINESDG 426
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 267 YIYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRT 326
+I GLGE F LD K V++ +D Y L ++ G+A G F +
Sbjct: 63 HIIGLGE--KAFELDRKRKRYVMYNVDAGAYKKYQDPLYVSIPLFISVKDGVATGYFFNS 120
Query: 327 SNAL--EIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFH 384
++ + ++ L+ + + ++FY GP+ DV+ +Y +L G P LPP W+ G+
Sbjct: 121 ASKVIFDVGLEEYDKVIVTIPEDSVEFYVIEGPRIEDVLEKYTELTGKPFLPPMWAFGYM 180
Query: 385 LCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVL-AKPFYGLKEYVQDLH 443
+ RY Y + +VD K G + V++DI YM+ + F F K+ + +LH
Sbjct: 181 ISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWHPYRFPEPKKLIDELH 240
Query: 444 KEGRHFIPILDPGVASREDSNYLPYVEGVEK 474
K I I+D G+ R D NY P++ G+ K
Sbjct: 241 KRNVKLITIVDHGI--RVDQNYSPFLSGMGK 269
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 297 QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVLQPTPAITYRVL--GGILDFYYF 354
+D + YG H F + S G+F + L + T T +V LD Y
Sbjct: 82 EDKRSLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVI 138
Query: 355 LGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVW 414
G D++ Q+ +IG +PP ++ GF RYGY ++V + IP+D ++
Sbjct: 139 EGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIY 198
Query: 415 IDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVE 473
+DIDYM+ +F + K F E+V+++ + IPI+D GV + + Y Y EGV+
Sbjct: 199 MDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGV--KVEKGYEVYEEGVK 256
Query: 474 KGIFVMNSSG 483
F G
Sbjct: 257 NNYFCKREDG 266
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 297 QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVLQPTPAITYRVL--GGILDFYYF 354
+D + YG H F + S G+F + L + T T +V LD Y
Sbjct: 82 EDKRSLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVI 138
Query: 355 LGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVW 414
G D++ Q+ +IG +PP ++ GF RYGY ++V + IP+D ++
Sbjct: 139 EGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIY 198
Query: 415 IDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVE 473
+DIDYM+ +F + K F E+V+++ + IPI+D GV + + Y Y EGV+
Sbjct: 199 MDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGV--KVEKGYEVYEEGVK 256
Query: 474 KGIFVMNSSG 483
F G
Sbjct: 257 NNYFCKREDG 266
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 297 QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVLQPTPAITYRVL--GGILDFYYF 354
+D + YG H F + S G+F + L + T T +V LD Y
Sbjct: 82 EDKRSLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVI 138
Query: 355 LGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVW 414
G D++ Q+ +IG +PP ++ GF R+GY ++V + IP+D ++
Sbjct: 139 EGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIY 198
Query: 415 IDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVE 473
+DIDYM+ +F + K F E+V+++ + IPI+D GV + + Y Y EGV+
Sbjct: 199 MDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGV--KVEKGYEVYEEGVK 256
Query: 474 KGIFVMNSSG 483
F G
Sbjct: 257 NNYFCKREDG 266
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 297 QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVLQPTPAITYRVL--GGILDFYYF 354
+D + YG H F + S G+F + L + T T +V LD Y
Sbjct: 82 EDKRSLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVI 138
Query: 355 LGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVW 414
G D++ Q+ +IG +PP ++ GF R+GY ++V + IP+D ++
Sbjct: 139 EGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIY 198
Query: 415 IDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVE 473
+DIDYM+ +F + K F E+V+++ + IPI+D GV + + Y Y EGV+
Sbjct: 199 MDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGV--KVEKGYEVYEEGVK 256
Query: 474 KGIFVMNSSG 483
F G
Sbjct: 257 NNYFCKREDG 266
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 297 QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVLQPTPAITYRVL--GGILDFYYF 354
+D + YG H F + S G+F + L + T T +V LD Y
Sbjct: 82 EDKRSLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVI 138
Query: 355 LGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVW 414
G D++ Q+ +IG +PP ++ GF R+GY ++V + IP+D ++
Sbjct: 139 EGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIY 198
Query: 415 IDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVE 473
+DIDYM+ +F + K F E+V+++ + IPI+D GV + + Y Y EGV+
Sbjct: 199 MDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGV--KVEKGYEVYEEGVK 256
Query: 474 KGIFVMNSSG 483
F G
Sbjct: 257 NNYFCKREDG 266
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 297 QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVLQPTPAITYRVL--GGILDFYYF 354
+D + YG H F + S G+F + L + T T +V LD Y
Sbjct: 82 EDKRSLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRXDTLKVSCENADLDIYVI 138
Query: 355 LGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVW 414
G D++ Q+ +IG +PP ++ GF R+GY ++V + IP+D ++
Sbjct: 139 EGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDXIY 198
Query: 415 IDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVE 473
DIDY + +F + K F E+V++ + IPI+D GV + + Y Y EGV+
Sbjct: 199 XDIDYXQDFKDFTVNEKNFPDFPEFVKEXKDQELRLIPIIDAGV--KVEKGYEVYEEGVK 256
Query: 474 KGIFVMNSSG 483
F G
Sbjct: 257 NNYFCKREDG 266
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 268 IYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRTS 327
+YGLGE + + +T+ W DG Y PFY+ + +GV +
Sbjct: 162 VYGLGERFTALVRNG--QTVETWNRDGGTST-EQAYKNIPFYM-----TNRGYGVLVNHP 213
Query: 328 N--ALEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHL 385
+ E+ + + + V L+++ GP P V+ +Y G P LPP WS G L
Sbjct: 214 QCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWL 273
Query: 386 CRYGYKNL--SHIQSVVDRNVKAGIPLDTVWIDIDYME 421
N + + S +D + +PL D +M+
Sbjct: 274 TTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMK 311
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 268 IYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRTS 327
+YGLGE + + +T+ W DG Y PFY+ + +GV +
Sbjct: 162 VYGLGERFTALVRNG--QTVETWNRDGGTST-EQAYKNIPFYM-----TNRGYGVLVNHP 213
Query: 328 N--ALEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHL 385
+ E+ + + + V L+++ GP P V+ +Y G P LPP WS G L
Sbjct: 214 QCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWL 273
Query: 386 CRYGYKNL--SHIQSVVDRNVKAGIPLDTVWIDIDYME 421
N + + S +D + +PL D +M+
Sbjct: 274 TTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMK 311
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 12/153 (7%)
Query: 268 IYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRTS 327
+YGLGE + + +T+ W DG Y PFY + +GV +
Sbjct: 162 VYGLGERFTALVRNG--QTVETWNRDGGTST-EQAYKNIPFY-----XTNRGYGVLVNHP 213
Query: 328 N--ALEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHL 385
+ E+ + + + V L+++ GP P V+ +Y G P LPP WS G L
Sbjct: 214 QCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWL 273
Query: 386 CRYGYKNL--SHIQSVVDRNVKAGIPLDTVWID 416
N + + S +D + +PL D
Sbjct: 274 TTSFTTNYDEATVNSFIDGXAERNLPLHVFHFD 306
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 305 YHPFYLNLNASSGLAHGVFLRTSNALEIV--LQPTPAITYRVL------GGILDFYYFLG 356
YH FY LNA V + + L P PA L G +D+Y+ G
Sbjct: 351 YHNFYRELNAGDKHKLKVSWKPDGGFFHLRHLDPLPANEQHELSLASETGKAIDYYFVAG 410
Query: 357 PKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWID 416
D+IS Y L G + P W+ GF R YK+ I + IP+D + +D
Sbjct: 411 DTKDDIISGYRQLTGKSVMLPKWAYGFWQSRERYKSSDEIIQNLKEYRDRKIPIDNIVLD 470
Query: 417 IDY 419
Y
Sbjct: 471 WSY 473
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 362 VISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDI 417
+I + + G LPP W+LG R+GY++ + ++ V + PLDT+ +D+
Sbjct: 245 LIENFTQVTGRQPLPPRWALGSFASRFGYRSEAETRATVQKYKTEDFPLDTIVLDL 300
>pdb|1PCP|A Chain A, Solution Structure Of A Trefoil-Motif-Containing Cell
Growth Factor, Porcine Spasmolytic Protein
Length = 106
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 116 CHRNVPDKERFDC-----------FPNGQVTEESCTARGCCWSISNNSKVPACFYPHGLQ 164
C + +P +E +C +P ++ E C AR CC+S +VP CF+P ++
Sbjct: 46 CFKPLPAQESEECVMQVSARKNCGYPG--ISPEDCAARNCCFS-DTIPEVPWCFFPMSVE 102
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 116 CHRNVPDKERFDC-FPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
C R P K R +C FP +T + C GCC+ S VP CF P
Sbjct: 8 CSRQDP-KNRVNCGFPG--ITSDQCFTSGCCFD-SQVPGVPWCFKP 49
>pdb|1POS|A Chain A, Crystal Structure Of A Novel Disulfide-Linked "trefoil"
Motif Found In A Large Family Of Putative Growth Factors
pdb|1POS|B Chain B, Crystal Structure Of A Novel Disulfide-Linked "trefoil"
Motif Found In A Large Family Of Putative Growth Factors
pdb|1PSP|A Chain A, Pancreatic Spasmolytic Polypeptide: First
Three-Dimensional Structure Of A Member Of The Mammalian
Trefoil Family Of Peptides
pdb|1PSP|B Chain B, Pancreatic Spasmolytic Polypeptide: First
Three-Dimensional Structure Of A Member Of The Mammalian
Trefoil Family Of Peptides
pdb|2PSP|A Chain A, Porcine Pancreatic Spasmolytic Polypeptide
pdb|2PSP|B Chain B, Porcine Pancreatic Spasmolytic Polypeptide
Length = 106
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 116 CHRNVPDKERFDC-----------FPNGQVTEESCTARGCCWSISNNSKVPACFYPHGLQ 164
C + +P +E +C +P ++ E C AR CC+S +VP CF+P ++
Sbjct: 46 CFKPLPAQESEECVMQVSARKNCGYPG--ISPEDCAARNCCFS-DTIPEVPWCFFPMSVE 102
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 116 CHRNVPDKERFDC-FPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
C R P K R +C FP +T + C GCC+ S VP CF P
Sbjct: 8 CSRQDP-KNRVNCGFPG--ITSDQCFTSGCCFD-SQVPGVPWCFKP 49
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 162 GLQSYKVVHIDKHSY-------GLDVYWKNTIKSPYGSDVQMLQMSVKFETVQRLHVKIT 214
GL + +V+++D + GL +I + SD+ L K T++ KI+
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186
Query: 215 DANATRYEPSFPEVPMFNNRVKSVDCLFDSRNLGGFMYSNQFI 257
D + P+ EV + NN++ V L ++ NL +NQ I
Sbjct: 187 DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229
>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
pdb|1MCX|A Chain A, Structure Of Full-Length Annexin A1 In The Presence Of
Calcium
Length = 346
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 2 DKDQFRDIVDELALDKDTINEILA--TDKDINE 32
D D+ R + L D+DT+NEILA T+++I E
Sbjct: 119 DADELRAAMKGLGTDEDTLNEILASRTNREIRE 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,074,229
Number of Sequences: 62578
Number of extensions: 738838
Number of successful extensions: 1471
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 32
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)