RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6580
(490 letters)
>gnl|CDD|133133 cd06602, GH31_MGAM_SI_GAA, This family includes the following three
closely related glycosyl hydrolase family 31 (GH31)
enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase
(SI), and lysosomal acid alpha-glucosidase (GAA), also
known as acid-maltase. MGAM is one of the two enzymes
responsible for catalyzing the last glucose-releasing
step in starch digestion. SI is implicated in the
digestion of dietary starch and major disaccharides such
as sucrose and isomaltose, while GAA degrades glycogen
in the lysosome, cleaving both alpha-1,4 and alpha-1,6
glucosidic linkages. MGAM and SI are anchored to
small-intestinal brush-border epithelial cells. The
absence of SI from the brush border membrane or its
malfunction is associated with malabsorption disorders
such as congenital sucrase-isomaltase deficiency (CSID).
The domain architectures of MGAM and SI include two
tandem GH31 catalytic domains, an N-terminal domain
found near the membrane-bound end, and a C-terminal
luminal domain. Both of the tandem GH31 domains of MGAM
and SI are included in this family. The domain
architecture of GAA includes an N-terminal TFF (trefoil
factor family) domain in addition to the GH31 catalytic
domain. Deficient GAA expression causes pompe disease,
an autosomal recessive genetic disorder also known as
glycogen storage disease type II (GSDII).
Length = 339
Score = 169 bits (431), Expect = 2e-48
Identities = 58/123 (47%), Positives = 80/123 (65%), Gaps = 4/123 (3%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAK 430
G P +PPYW+LGFHLCR+GYKN+ ++ VV+ AGIPLD W DIDYM+R +F L
Sbjct: 1 GRPAMPPYWALGFHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDP 60
Query: 431 ---PFYGLKEYVQDLHKEGRHFIPILDPGVASRED-SNYLPYVEGVEKGIFVMNSSGLPA 486
P + E+V +LH G+H++PILDP +++ E +Y PY G+E +F+ N G P
Sbjct: 61 VRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPY 120
Query: 487 EGK 489
GK
Sbjct: 121 IGK 123
>gnl|CDD|216268 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31. Glycosyl
hydrolases are key enzymes of carbohydrate metabolism.
Family 31 comprises of enzymes that are, or similar to,
alpha- galactosidases.
Length = 436
Score = 160 bits (406), Expect = 5e-44
Identities = 59/130 (45%), Positives = 82/130 (63%), Gaps = 5/130 (3%)
Query: 352 YYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLD 411
Y+F GP P DV+ QY +L G P +PPYW+LGFH CR+GYK+ ++ VVD +AGIPLD
Sbjct: 1 YFFAGPTPKDVVKQYTELTGRPPMPPYWALGFHQCRWGYKSEDEVREVVDGFREAGIPLD 60
Query: 412 TVWIDIDYMERHNNFVLAKPFYG-LKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVE 470
+W+DIDYM+ + +F + KE + +LH +G + I+DPG+ +Y Y E
Sbjct: 61 VIWLDIDYMDGYRDFTWDPERFPDPKEMLDELHAKGIKVVLIIDPGIK----VDYGVYDE 116
Query: 471 GVEKGIFVMN 480
G EK FV N
Sbjct: 117 GKEKDYFVKN 126
>gnl|CDD|224418 COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl
hydrolases [Carbohydrate transport and metabolism].
Length = 772
Score = 126 bits (319), Expect = 6e-31
Identities = 84/316 (26%), Positives = 135/316 (42%), Gaps = 25/316 (7%)
Query: 181 YWKNTIKSPYGSDVQMLQMSVKFETVQRLHVKITDANATRYEPSFPEVPMFNNRVKSVDC 240
+ +I +V+ + + K T +RL V + E S + + ++
Sbjct: 74 LLEASISPDPKVEVEETERTAKI-TSERLSVSVNKTGNLLLEFSKNDEGITREDLRGRAE 132
Query: 241 LFDSRNLGGFMYSNQFIQISSRLSSPYIYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGV 300
L D+ GG F+ ++YGLGE + +T LW D G
Sbjct: 133 LEDTFGGGG----YVFLYFDLG-GGEHVYGLGERAGGLGRNG--QTYRLWNADAGTYTGG 185
Query: 301 NGYGYH---PFYLNLNASSGLAHGVFLRTSNALEIVLQ--PTPAITYRVLGGILDFYYFL 355
+ + PFYL S +G+F+ S + + + V GG LD+Y
Sbjct: 186 DYDNLYASIPFYL-----SSRGYGLFVDNSAYGSFDVGSEEYSYVQFSVEGGQLDYYVIA 240
Query: 356 GPKPGDVISQYLDLIGYPELPPYWSLGF-HLCRYGYKNLSHIQSVVDRNVKAGIPLDTVW 414
GP P DV+ +Y DL G P LPP W+LG+ RY Y + + +D + IPLD
Sbjct: 241 GPTPKDVLEKYTDLTGKPPLPPKWALGWLWTSRYTYYDEDEVLEFIDEMRERDIPLDVFV 300
Query: 415 IDID-YMERHNNF-VLAKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGV 472
+DID +M+ +F F K+ + +LH++G I I++P + DS + E +
Sbjct: 301 LDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQ--DSPL--FKEAI 356
Query: 473 EKGIFVMNSSGLPAEG 488
EKG FV + G +
Sbjct: 357 EKGYFVKDPDGEIYQA 372
>gnl|CDD|133135 cd06604, GH31_glucosidase_II_MalA, Alpha-glucosidase II
(alpha-D-glucoside glucohydrolase) is a glycosyl
hydrolase family 31 (GH31) enzyme, found in bacteria and
plants, which has exo-alpha-1,4-glucosidase and
oligo-1,6-glucosidase activities. Alpha-glucosidase II
has been characterized in Bacillus
thermoamyloliquefaciens where it forms a homohexamer.
This family also includes the MalA alpha-glucosidase
from Sulfolobus sulfataricus and the AglA
alpha-glucosidase from Picrophilus torridus. MalA is
part of the carbohydrate-metabolizing machinery that
allows this organism to utilize carbohydrates, such as
maltose, as the sole carbon and energy source.
Length = 339
Score = 121 bits (305), Expect = 1e-30
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAK 430
G P LPP W+LG+ R+ Y ++ + D + IP D +++DIDYM+ + F K
Sbjct: 1 GRPPLPPKWALGYQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDK 60
Query: 431 P-FYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSGLPAEGK 489
F KE +++LH++G + I+DPGV + D Y Y EG+E FV + G G+
Sbjct: 61 ERFPDPKELIKELHEQGFKVVTIIDPGV--KVDPGYDVYEEGLENDYFVKDPDGELYIGR 118
>gnl|CDD|133131 cd06600, GH31_MGAM-like, This family includes the following closely
related glycosyl hydrolase family 31 (GH31) enzymes:
maltase-glucoamylase (MGAM), sucrase-isomaltase (SI),
lysosomal acid alpha-glucosidase (GAA), neutral
alpha-glucosidase C (GANC), the alpha subunit of neutral
alpha-glucosidase AB (GANAB), and alpha-glucosidase II.
MGAM is one of the two enzymes responsible for
catalyzing the last glucose-releasing step in starch
digestion. SI is implicated in the digestion of dietary
starch and major disaccharides such as sucrose and
isomaltose, while GAA degrades glycogen in the lysosome,
cleaving both alpha-1,4 and alpha-1,6 glucosidic
linkages. MGAM and SI are anchored to small-intestinal
brush-border epithelial cells. The absence of SI from
the brush border membrane or its malfunction is
associated with malabsorption disorders such as
congenital sucrase-isomaltase deficiency (CSID). The
domain architectures of MGAM and SI include two tandem
GH31 catalytic domains, an N-terminal domain found near
the membrane-bound end and a C-terminal luminal domain.
Both of the tandem GH31 domains of MGAM and SI are
included in this family. The domain architecture of GAA
includes an N-terminal TFF (trefoil factor family)
domain in addition to the GH31 catalytic domain.
Deficient GAA expression causes pompe disease, an
autosomal recessive genetic disorder also known as
glycogen storage disease type II (GSDII). GANC and GANAB
are key enzymes in glycogen metabolism that hydrolyze
terminal, non-reducing 1,4-linked alpha-D-glucose
residues from glycogen in the endoplasmic reticulum.
Alpha-glucosidase II is a GH31 enzyme, found in bacteria
and plants, which has exo-alpha-1,4-glucosidase and
oligo-1,6-glucosidase activities. Alpha-glucosidase II
has been characterized in Bacillus
thermoamyloliquefaciens where it forms a homohexamer.
This family also includes the MalA alpha-glucosidase
from Sulfolobus sulfataricus and the AglA
alpha-glucosidase from Picrophilus torridus. MalA is
part of the carbohydrate-metabolizing machinery that
allows this organism to utilize carbohydrates, such as
maltose, as the sole carbon and energy source. The
MGAM-like family corresponds to subgroup 1 in the Ernst
et al classification of GH31 enzymes.
Length = 317
Score = 114 bits (288), Expect = 1e-28
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVL-A 429
G P LPP W+LG+H+ RY Y + VVD K G P D V++DI YM+ + F
Sbjct: 1 GKPALPPMWALGYHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDP 60
Query: 430 KPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSGLPAEGK 489
F K+ + +LHK + I+DPG+ R D NY P++ G++KG F SG GK
Sbjct: 61 YRFPEPKKLIDELHKRNVKLVTIVDPGI--RVDQNYSPFLSGMDKGKFCEIESGELFVGK 118
>gnl|CDD|133134 cd06603, GH31_GANC_GANAB_alpha, This family includes the closely
related glycosyl hydrolase family 31 (GH31) isozymes,
neutral alpha-glucosidase C (GANC) and the alpha subunit
of heterodimeric neutral alpha-glucosidase AB (GANAB).
Initially distinguished on the basis of differences in
electrophoretic mobility in starch gel, GANC and GANAB
have been shown to have other differences, including
those of substrate specificity. GANC and GANAB are key
enzymes in glycogen metabolism that hydrolyze terminal,
non-reducing 1,4-linked alpha-D-glucose residues from
glycogen in the endoplasmic reticulum. The GANC/GANAB
family includes the alpha-glucosidase II (ModA) from
Dictyostelium discoideum as well as the
alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2
lethality protein 2) from Saccharomyces cerevisiae.
Length = 339
Score = 96.9 bits (242), Expect = 4e-22
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAK 430
G P LPP +SLG+H CR+ YK+ ++ V + IP D +W+DI++ + F K
Sbjct: 1 GRPPLPPLFSLGYHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDK 60
Query: 431 -PFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSGLPAEGK 489
F ++ + L +GR + I+DP + D Y Y E +KG V NS G EG
Sbjct: 61 KKFPDPEKMQEKLASKGRKLVTIVDPHIKR--DDGYYVYKEAKDKGYLVKNSDGGDFEGW 118
>gnl|CDD|215408 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds.
Length = 978
Score = 93.8 bits (233), Expect = 4e-20
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 30/235 (12%)
Query: 269 YGLGEHRNQFLLDTDWKTIVLWPLD--GPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRT 326
YG GE L+ K + W D G Q+ + Y HP+ + +G A GV T
Sbjct: 77 YGTGEVSGP--LERTGKRVYTWNTDAWGYGQNTTSLYQSHPWVFVV-LPNGEALGVLADT 133
Query: 327 SNALEIVLQ-----------PTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPEL 375
+ EI L+ P IT F F P P +++ IG +
Sbjct: 134 TRRCEIDLRKESIIRIIAPASYPVIT---------FGPF--PSPEALLTSLSHAIGTVFM 182
Query: 376 PPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAKP-FYG 434
PP W+LG+ CR+ Y++ + + + IP D VW+DIDYM+ F K F
Sbjct: 183 PPKWALGYQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDGFRCFTFDKERFPD 242
Query: 435 LKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSGLPAEGK 489
K DLH G I +LDPG+ + + Y Y G E +++ + G P G+
Sbjct: 243 PKGLADDLHSIGFKAIWMLDPGI--KAEEGYFVYDSGCENDVWIQTADGKPFVGE 295
>gnl|CDD|133121 cd06589, GH31, The enzymes of glycosyl hydrolase family 31 (GH31)
occur in prokaryotes, eukaryotes, and archaea with a
wide range of hydrolytic activities, including
alpha-glucosidase (glucoamylase and sucrase-isomaltase),
alpha-xylosidase, 6-alpha-glucosyltransferase,
3-alpha-isomaltosyltransferase and alpha-1,4-glucan
lyase. All GH31 enzymes cleave a terminal carbohydrate
moiety from a substrate that varies considerably in
size, depending on the enzyme, and may be either a
starch or a glycoprotein. In most cases, the pyranose
moiety recognized in subsite -1 of the substrate binding
site is an alpha-D-glucose, though some GH31 family
members show a preference for alpha-D-xylose. Several
GH31 enzymes can accommodate both glucose and xylose and
different levels of discrimination between the two have
been observed. Most characterized GH31 enzymes are
alpha-glucosidases. In mammals, GH31 members with
alpha-glucosidase activity are implicated in at least
three distinct biological processes. The lysosomal acid
alpha-glucosidase (GAA) is essential for glycogen
degradation and a deficiency or malfunction of this
enzyme causes glycogen storage disease II, also known as
pompe disease. In the endoplasmic reticulum,
alpha-glucosidase II catalyzes the second step in the
N-linked oligosaccharide processing pathway that
constitutes part of the quality control system for
glycoprotein folding and maturation. The intestinal
enzymes sucrase-isomaltase (SI) and maltase-glucoamylase
(MGAM) play key roles in the final stage of carbohydrate
digestion, making alpha-glucosidase inhibitors useful in
the treatment of type 2 diabetes. GH31
alpha-glycosidases are retaining enzymes that cleave
their substrates via an acid/base-catalyzed,
double-displacement mechanism involving a covalent
glycosyl-enzyme intermediate. Two aspartic acid residues
have been identified as the catalytic nucleophile and
the acid/base, respectively.
Length = 265
Score = 81.3 bits (201), Expect = 3e-17
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVL-- 428
G P LPP W+ G+ L RYGY + + V+D + IPLD +D DY + + +F
Sbjct: 1 GKPALPPKWAFGYWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDW 60
Query: 429 -AKPFYGLKEYVQDLHKEGRHFIPILDPGVA 458
A F K + +LH G + +DP +
Sbjct: 61 DAGKFPNPKSMIDELHDNGVKLVLWIDPYIR 91
>gnl|CDD|238059 cd00111, Trefoil, P or trefoil or TFF domain; Trefoil factor family
domain peptides are mucin-associated molecules, largely
found in epithelia of gastrointestinal tissues. Function
is not known but it was originally identified from
mucosal tissues, where it may have a regulatory or
structural role and has also been implicated as a growth
fractor in other tissues.The domain is found in 1 to 6
copies where it occurs.
Length = 44
Score = 64.3 bits (157), Expect = 2e-13
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
+VP ER DC P G +T+E C ARGCC+ + S VP CFYP
Sbjct: 4 SVPPSERIDCGPPG-ITQEECEARGCCFD-PSISGVPWCFYP 43
>gnl|CDD|197472 smart00018, PD, P or trefoil or TFF domain. Proposed role in
renewal and pathology of mucous epithelia.
Length = 46
Score = 63.6 bits (155), Expect = 3e-13
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
+VP ER +C P G +TE C ARGCC+ S+ S VP CFYP
Sbjct: 4 SVPPSERINCGPPG-ITEAECEARGCCFD-SSISGVPWCFYP 43
>gnl|CDD|215707 pfam00088, Trefoil, Trefoil (P-type) domain.
Length = 42
Score = 56.9 bits (138), Expect = 5e-11
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
+VP +R DC G +T+ C ARGCC+ S+ VP CFYP
Sbjct: 3 SVPPSDRVDCGYPG-ITQAECEARGCCFD-SSIPGVPWCFYP 42
>gnl|CDD|133132 cd06601, GH31_lyase_GLase, GLases (alpha-1,4-glucan lyases) are
glycosyl hydrolase family 31 (GH31) enzymes that degrade
alpha-1,4-glucans and maltooligosaccharides via a
nonhydrolytic pathway to yield 1,5-D-anhydrofructose
from the nonreducing end. GLases cleave the bond between
C1 and O1 of the nonreducing sugar residue of
alpha-glucans to generate a monosaccharide product with
a double bond between C1 and C2. This family corresponds
to subgroup 2 in the Ernst et al classification of GH31
enzymes.
Length = 332
Score = 54.0 bits (130), Expect = 6e-08
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAK 430
G +L P ++LGFH YGY N S ++ VV+ IPLD + +D+D+ + + F
Sbjct: 1 GRSKLKPRYALGFHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNG 60
Query: 431 -PFYGLKEYVQDLHKEG 446
F KE +LH +G
Sbjct: 61 GGFPNPKEMFDNLHNKG 77
>gnl|CDD|133129 cd06598, GH31_transferase_CtsZ, CtsZ (cyclic
tetrasaccharide-synthesizing enzyme Z) is a bacterial
6-alpha-glucosyltransferase, first identified in
Arthrobacter globiformis, that produces cyclic
tetrasaccharides together with a closely related enzyme
CtsY. CtsZ and CtsY both have a glycosyl hydrolase
family 31 (GH31) catalytic domain. All GH31 enzymes
cleave a terminal carbohydrate moiety from a substrate
that varies considerably in size, depending on the
enzyme, and may be either a starch or a glycoprotein.
Length = 317
Score = 50.8 bits (122), Expect = 7e-07
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERH------- 423
G LPP W+LG R+GY+N + + + PLD +D+ + +
Sbjct: 1 GRQPLPPRWALGNWASRFGYRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG 60
Query: 424 NNFVLAKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSG 483
N K F + DL K+G I I +P V +S + E V+ G + G
Sbjct: 61 NLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLK--NSKN--WGEAVKAGALLKKDQG 116
>gnl|CDD|236731 PRK10658, PRK10658, putative alpha-glucosidase; Provisional.
Length = 665
Score = 48.4 bits (116), Expect = 7e-06
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 20/125 (16%)
Query: 268 IYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNG---YGYHPFYLNLNASSGLAHGVFL 324
+YGLGE F+ + +T+ +W DG G + Y PFYL + +GVF+
Sbjct: 161 VYGLGERFTAFV--KNGQTVDIWNRDG----GTSSEQAYKNIPFYL-----TNRGYGVFV 209
Query: 325 ----RTSNALEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWS 380
S E+ + + + V G L+++ GP P +V+ +Y L G P LPP WS
Sbjct: 210 NHPQCVS--FEVGSEKVSKVQFSVEGEYLEYFVIDGPTPKEVLDRYTALTGRPALPPAWS 267
Query: 381 LGFHL 385
G L
Sbjct: 268 FGLWL 272
>gnl|CDD|133124 cd06593, GH31_xylosidase_YicI, YicI alpha-xylosidase is a glycosyl
hydrolase family 31 (GH31) enzyme that catalyzes the
release of an alpha-xylosyl residue from the
non-reducing end of alpha-xyloside substrates such as
alpha-xylosyl fluoride and isoprimeverose. YicI forms a
homohexamer (a trimer of dimers). All GH31 enzymes
cleave a terminal carbohydrate moiety from a substrate
that varies considerably in size, depending on the
enzyme, and may be either a starch or a glycoprotein.
The YicI family corresponds to subgroup 4 in the Ernst
et al classification of GH31 enzymes.
Length = 308
Score = 42.3 bits (100), Expect = 3e-04
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERH--NNFVL 428
G P LPP WS G L R Y + + D + +P D + +D +M+ +F
Sbjct: 1 GRPALPPAWSFGLWLSRSFYYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEF 60
Query: 429 -AKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSG 483
F + + L ++G ++P +A + S + E EKG V G
Sbjct: 61 DPDRFPDPEGMLSRLKEKGFKVCLWINPYIA--QKSPL--FKEAAEKGYLVKKPDG 112
>gnl|CDD|133122 cd06591, GH31_xylosidase_XylS, XylS is a glycosyl hydrolase family
31 (GH31) alpha-xylosidase found in prokaryotes,
eukaryotes, and archaea, that catalyzes the release of
alpha-xylose from the non-reducing terminal side of the
alpha-xyloside substrate. XylS has been characterized in
Sulfolobus solfataricus where it hydrolyzes
isoprimeverose, the p-nitrophenyl-beta derivative of
isoprimeverose, and xyloglucan oligosaccharides, and has
transxylosidic activity. All GH31 enzymes cleave a
terminal carbohydrate moiety from a substrate that
varies considerably in size, depending on the enzyme,
and may be either a starch or a glycoprotein. The XylS
family corresponds to subgroup 3 in the Ernst et al
classification of GH31 enzymes.
Length = 319
Score = 42.3 bits (100), Expect = 3e-04
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMER--HNNFVL 428
G + P W+ GF + YK + V K GIPLD + D Y + +
Sbjct: 1 GKAPMMPKWAYGFWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKF 60
Query: 429 AKPFY-GLKEYVQDLHKEGRHFI 450
+ K V++LH+ +
Sbjct: 61 DPERFPDPKAMVRELHEMNAELM 83
>gnl|CDD|133125 cd06594, GH31_glucosidase_YihQ, YihQ is a bacterial
alpha-glucosidase with a conserved glycosyl hydrolase
family 31 (GH31) domain that catalyzes the release of an
alpha-glucosyl residue from the non-reducing end of
alpha-glucoside substrates such as alpha-glucosyl
fluoride. Orthologs of YihQ that have not yet been
functionally characterized are present in plants and
fungi. YihQ has sequence similarity to other GH31
enzymes such as CtsZ, a 6-alpha-glucosyltransferase from
Bacillus globisporus, and YicI, an alpha-xylosidase from
Echerichia coli. In bacteria, YihQ (along with YihO) is
important for bacterial O-antigen capsule assembly and
translocation.
Length = 317
Score = 41.1 bits (97), Expect = 9e-04
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 396 IQSVVDRNVKAGIPLDTVWIDIDYMERHN---------NFVLAKPFY-GLKEYVQDLHKE 445
+ +++ AG+ + +W+ D+ R N+ Y GL E +++L
Sbjct: 25 VLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKAR 83
Query: 446 GRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSGLP 485
G + ++P +A D L Y E + G V ++ G P
Sbjct: 84 GIRVLTYINPYLA---DDGPLYYEEAKDAGYLVKDADGSP 120
>gnl|CDD|222390 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like. This family
is found N-terminal to glycosyl-hydrolase domains, and
appears to be similar to the galactose mutarotase
superfamily.
Length = 68
Score = 36.7 bits (86), Expect = 0.002
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 267 YIYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNG---YGYHPFYLNLNASSGLAHGVF 323
+ YGLGE + LW D D + Y PFY++L S G +GVF
Sbjct: 3 HFYGLGERAGPLNKRG--QRYRLWNTDAYGYDAESTDPLYKSIPFYISLRPSRG--YGVF 58
Query: 324 LRTS 327
+
Sbjct: 59 FDNT 62
>gnl|CDD|236691 PRK10426, PRK10426, alpha-glucosidase; Provisional.
Length = 635
Score = 36.9 bits (86), Expect = 0.022
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 354 FLGPKPGDVISQYLDLIG-YPELPPYWSLGFHLCRYGYKN-LSHIQSVVDRNVKAGIPLD 411
++ + L G PELP + G L G + +Q +D AG+ ++
Sbjct: 182 ECADTYISLLEKLTALFGRQPELPDWAYDGVTL---GIQGGTEVVQKKLDTMRNAGVKVN 238
Query: 412 TVWIDIDYMERHN---------NFVLAKPFY-GLKEYVQDLHKEGRHFIPILDPGVASRE 461
+W D+ N+ Y L ++ L++EG F+ ++P +AS
Sbjct: 239 GIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDG 297
Query: 462 DSNYLPYVEGVEKGIFVMNSSG 483
D E EKG ++ G
Sbjct: 298 DL----CEEAAEKGYLAKDADG 315
>gnl|CDD|133130 cd06599, GH31_glycosidase_Aec37, Glycosyl hydrolase family 31
(GH31) domain of a bacterial protein family represented
by Escherichia coli protein Aec37. The gene encoding
Aec37 (aec-37) is located within a genomic island
(AGI-3) isolated from the extraintestinal avian
pathogenic Escherichia coli strain BEN2908. The function
of Aec37 and its orthologs is unknown; however, deletion
of a region of the genome that includes aec-37 affects
the assimilation of seven carbohydrates, decreases
growth rate of the strain in minimal medium containing
galacturonate or trehalose, and attenuates the virulence
of E. coli BEN2908 in chickens. All GH31 enzymes cleave
a terminal carbohydrate moiety from a substrate that
varies considerably in size, depending on the enzyme,
and may be either a starch or a glycoprotein.
Length = 317
Score = 33.8 bits (78), Expect = 0.18
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 14/123 (11%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLS-----HIQSVVDRNVKAGIPLDTVWIDIDY--MERH 423
G P + P WSLG+ Y L + +D+ + IP D+ + Y +E
Sbjct: 1 GKPAMVPRWSLGYSGSTMYYTELDPDAQEALLEFIDKCREHDIPCDSFHLSSGYTSIEGG 60
Query: 424 NNFVLA---KPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMN 480
+V F +V H+ G P + PG+ ++ Y E E G F+
Sbjct: 61 KRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL----QDHPRYKELKEAGAFIKP 116
Query: 481 SSG 483
G
Sbjct: 117 PDG 119
>gnl|CDD|133126 cd06595, GH31_xylosidase_XylS-like, This family represents an
uncharacterized glycosyl hydrolase family 31 (GH31)
enzyme found in bacteria and eukaryotes that is related
to the XylS xylosidase of Sulfolobus solfataricus.
Alpha-xylosidases catalyze the release of an
alpha-xylose residue from the non-reducing end of
alpha-xyloside substrates. Enzymes of the GH31 family
possess a wide range of different hydrolytic activities
including alpha-glucosidase (glucoamylase and
sucrase-isomaltase), alpha-xylosidase,
6-alpha-glucosyltransferase,
3-alpha-isomaltosyltransferase and alpha-1,4-glucan
lyase. All GH31 enzymes cleave a terminal carbohydrate
moiety from a substrate that varies considerably in
size, depending on the enzyme, and may be either a
starch or a glycoprotein.
Length = 292
Score = 32.7 bits (75), Expect = 0.34
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 371 GYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAK 430
G L P ++ G RY + +++DR K IPLD + ID+D+ H + +K
Sbjct: 2 GKIPLLPRYAFGNWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDW---HVTDIPSK 58
Query: 431 PFYGLKEY-------------VQDLHKEGRHFIPILDP--GVASREDS 463
G Y +QDLH G L P G+ + ED
Sbjct: 59 YGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQ 106
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 31.7 bits (72), Expect = 0.95
Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 5 QFRDIVDELALDKDTINEILATDKDINENLALDRAIKKLALDKDTINKNLATEKDINENL 64
+F+ I + + D + + + DI K L +T + IN+
Sbjct: 367 KFKKIEENSIDNLDIKEKKIENENDIEGKSDT----KNLEEGFETKDNKNKNSSFINKTE 422
Query: 65 ALDKDTIGNLDTDKDTNENMALDKATKQKLA--SDKVTSEKIANVDEDVN 112
+ ++ + + T E + ++ + + + + S +IA +DE+ N
Sbjct: 423 NILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQLDENQN 472
Score = 31.3 bits (71), Expect = 1.5
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 16 DKDTINEILATDKDINENLALDRAIKKLALDKDTINKNLATEKDINENLALDKDT-IGNL 74
+ D N + N N +D I + D TI+ NL+ K +KDT + N
Sbjct: 478 EFDLENNFSNSFNPENGN-KIDENINET-FDTSTISANLSENKTNFAQSFNNKDTNLINS 535
Query: 75 DTDKDTNENMALDKATKQKLASDKVTSEKIANVDEDVNYGVCHRNVPDKE 124
+ D ++ QK + + +V+E +N + +
Sbjct: 536 EIPIDLIKDTITIN-NSQKNVKKNGNKDYL-SVEEVINLIMLAIKFHSQN 583
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 31.5 bits (71), Expect = 1.0
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 202 KFETVQRLHVKITDANATRYEPSFPEV----PMFNNRVKSVDCLFDSRNLGGFMYSNQFI 257
FE V + + + + +P F E+ M ++ K RN G Y N +
Sbjct: 28 YFEDVSLAYKLYSMLRSLKLDPHFMELANPKKMVVSKRKDNLPPNGLRNKGNTCYMNCAL 87
Query: 258 Q 258
Q
Sbjct: 88 Q 88
>gnl|CDD|218939 pfam06207, DUF1002, Protein of unknown function (DUF1002). This
protein family has no known function. Its members are
about 300 amino acids in length. It has so far been
detected in Firmicute bacteria and some archaebacteria.
Length = 222
Score = 30.6 bits (70), Expect = 1.2
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 1 KDKDQFRDIVDELALDKDTINEILATDKDINENLALDRAIKKLALDKDTINKNLA 55
K K++ R IV+ + + I TD I + + L I L +D + L
Sbjct: 169 KTKEEIRKIVNNVLNN----LNINLTDNQIQQIVNLMVKINDLNIDWNQFKDQLN 219
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 30.1 bits (68), Expect = 1.5
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 8 DIVDELALDKDTINEILAT-DKDIN------ENLA----LDRAI----KKLALD--KDTI 50
DI K TIN+ +T DK+IN E L + A+ KKL + D
Sbjct: 31 DIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLK 90
Query: 51 NKNLATEKDINENLALDKDTIGNLDTDKDTNENMALDKATKQKLASDKVTSE 102
K I + L K ++ NE ++ + Q+ +SD+ E
Sbjct: 91 ITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKE 142
>gnl|CDD|185626 PTZ00447, PTZ00447, apical membrane antigen 1-like protein;
Provisional.
Length = 508
Score = 30.7 bits (69), Expect = 2.1
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 87 DKATKQKLASDKVTSE-KIANVDEDVNYGVCHRNVPDKERFDCFPNGQVTEESCTARGCC 145
D+ + L + K+T + I + D+N V ++ P E F CF +GQ E C +
Sbjct: 114 DETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQ---EICKVQMSF 170
Query: 146 WSISNNSKVPACFYPHGLQSYKVVHIDKHSYGLDVYWKNTIKSPYGSDVQMLQMSVKFE 204
+ I + C + GL++ WKN KS ++ + + F+
Sbjct: 171 YKIQKYACPSECMFIQD--------------GLEI-WKNKSKSGSKKNIDLQNIHKNFD 214
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 30.5 bits (68), Expect = 2.3
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 3 KDQFRDIVDELALDKDTINEILATDKDINENLA-----LDRAIKKLALDKDTINKNLATE 57
+++ +D+ L +D N++ K +ENL D K+L K ++ ++++T+
Sbjct: 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQ 312
Query: 58 KDINENLALDKDTIGNLDTDKDTNENMALDKATKQKLASDKVTSE 102
K + E+L + TI L +K+ +++ K K A V +E
Sbjct: 313 KALEEDLQIATKTICQLTEEKEAQ----MEELNKAKAAHSFVVTE 353
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 30.6 bits (69), Expect = 2.9
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 1 KDKDQFRDIVDELALDKDTINEILATDKD----INENLALDRAIKKLALDKDTINKNLAT 56
K K + +I+D++ + I L + +NE + R L DK TI
Sbjct: 1478 KKKKEATNIMDDINGEHSIIKTKLTKSSEKLNQLNEQPNIKREGDVLNNDKSTIAYET-- 1535
Query: 57 EKDINENLALDKDTIGNLDTDKDTNENMALDKAT---KQKLASDKVTSEK 103
I NL K + N+ KD E + L+KA + K+ K
Sbjct: 1536 ---IQYNLGRVKHNLLNILNIKDEIETI-LNKAQDLMRDISKISKIVENK 1581
Score = 29.4 bits (66), Expect = 5.7
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 1 KDKDQFRDIVDELALDKDTINEILATDKDINENLALDRAIKKLALDKDTINKNLA-TEKD 59
++ + L + N+I K I EN+ IK + D I+ + E+
Sbjct: 547 YYLQSIETLIKDEKLKRSMKNDIKNKIKYIEENV---DHIKDIISLNDEIDNIIQQIEEL 603
Query: 60 INENL 64
INE L
Sbjct: 604 INEAL 608
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional.
Length = 333
Score = 29.3 bits (66), Expect = 4.1
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 6 FRDIVDELAL---DKDTINEILATDKDINENLALDRAIKKLALDKDTINKNLATEKD--- 59
FR+ + L L DK TI+ L + E+ ++R + L +DT TEK+
Sbjct: 237 FRNTGEILELAGCDKLTISPKLLEELANTEDGPVERKLDPEKLTEDTEKLPELTEKEFRW 296
Query: 60 -INEN-LALDK--DTIGNLDTDKDTNENMALDKATKQ 92
+NE+ +A +K + I N D + EN+ K T+
Sbjct: 297 ELNEDAMATEKLAEGIRNFAKDLEKLENVIRAKLTEA 333
>gnl|CDD|238645 cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc
dependent enzyme which catalyzes the irreversible
hydrolytic deamination of both adenosine, as well as
desoxyadenosine, to ammonia and inosine or
desoxyinosine, respectively. ADA plays an important role
in the purine pathway. Low, as well as high levels of
ADA activity have been linked to several diseases.
Length = 325
Score = 29.5 bits (67), Expect = 4.6
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 437 EYVQDLHKEGRHFIPI-LDPGVASREDSNYLPYVEGVEKGI 476
EY++D +G + I P + +R ++ VE V +G+
Sbjct: 77 EYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGL 117
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 28.6 bits (65), Expect = 5.5
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 4 DQFRDIVDELALDKDTINEILATDKDINENLALDRAIKKLALDKDTI 50
+ FR++ E + + N+ D +I + +DR ++A +D +
Sbjct: 33 EIFRELAKERGMSLEEFNKYAEEDPEI--DKEIDRRQLEIAEKEDNV 77
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 29.2 bits (66), Expect = 5.6
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 20 INEILATDKDINENLALDRAIKKLALDKDTINKNLATEKDINENLALDKDTIGNLDTDKD 79
+ E+L + AL RAIKKL K T+ L D L+ + +D D
Sbjct: 84 VEELLEISDFLRGFRALKRAIKKLERIKRTLALALIELSD------LELEINIPIDDDGL 137
Query: 80 TNENMALDKATKQKLASDKV 99
+ + + ++ D
Sbjct: 138 IKDRASFELDAIRRQLRDLE 157
>gnl|CDD|204553 pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface
associated haemolysin that lyses the two most prevalent
types of insect immune cells (granulocytes and
plasmatocytes) as well as rabbit and horse
erythrocytes. This family has had DUF1267, pfam06895,
merged into it.
Length = 71
Score = 26.9 bits (60), Expect = 6.1
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 6 FRDIVDELALDKDTINEILATDKDINENLALDRAIKKLALDKDTINKNLATEKDINENL 64
+DI + L + + EI ++DI L++ D +NK L + I +N
Sbjct: 1 IQDIEERLNRIETKLKEI---EEDIR---NLEKRDAANEKDIKNLNKRL---EKIEDNT 50
>gnl|CDD|236577 PRK09581, pleD, response regulator PleD; Reviewed.
Length = 457
Score = 29.1 bits (66), Expect = 6.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 394 SHIQSVVDRNVKAGIPLDTVWIDIDYMERHN 424
H++++++R + G PL + IDID+ ++ N
Sbjct: 308 MHLKNLIERANERGKPLSLMMIDIDHFKKVN 338
>gnl|CDD|221375 pfam12008, EcoR124_C, Type I restriction and modification enzyme -
subunit R C terminal. This enzyme has been
characterized and shown to belong to a new family of the
type I class of restriction and modification enzymes.
This family is involved in bacterial defence by making
double strand breaks in specific double stranded DNA
sequences, e.g. that of invading bacteriophages. EcoR124
is made up of three subunits, HsdR, HsdS and HsdM. The R
subunit has ATPase and restriction endonuclease
activity. This domain is the C terminal of the R
subunit.
Length = 269
Score = 28.8 bits (65), Expect = 6.4
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 1 KDKDQFRDIVDEL----ALDKDTINEILATDKDINENLALDRAIKKLALDKDTINKNLAT 56
+D + +++L D I + T K + L+ ++ LD++ A
Sbjct: 161 SKRDLIEEFINDLQKGKLKDGADIRDYFETFKAEKKEKELEELAEEEGLDEE------AL 214
Query: 57 EKDINENLALDKDTIGNLDTDKDT-NENMALDKATKQKLASDKVTSEKIANVDED 110
++ I+E L D + I D KD K K++ ++ EK+A + E
Sbjct: 215 KEFIDEYLTGDLNEIPRGDDLKDLLPPEKLKAKFRKKEKKKKRLN-EKLAELLEK 268
>gnl|CDD|132720 cd02584, RNAP_II_Rpb1_C, Largest subunit (Rpb1) of Eukaryotic RNA
polymerase II (RNAP II), C-terminal domain. RNA
polymerase II (RNAP II) is a large multi-subunit complex
responsible for the synthesis of mRNA. RNAP II consists
of a 10-subunit core enzyme and a peripheral heterodimer
of two subunits. The largest core subunit (Rpb1) of
yeast RNAP II is the best characterized member of this
family. Structure studies suggest that RNAP complexes
from different organisms share a crab-claw-shape
structure. In yeast, Rpb1 and Rpb2, the largest and the
second largest subunits, each makes up one clamp, one
jaw, and part of the cleft. Rpb1 interacts with Rpb2 to
form the DNA entry and RNA exit channels in addition to
the catalytic center of RNA synthesis. The C-terminal
domain of Rpb1 makes up part of the foot and jaw
structures.
Length = 410
Score = 28.7 bits (65), Expect = 7.2
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 2 DKDQFRDIVDELALDKDTINEILATDKDINENLALDRAIKKLALDKD-TINKNLATEKD- 59
D D +++E DK+ + + E L + ++ LD+ +K L+ E+
Sbjct: 121 DPDPQNTVIEE---DKEFVESYFEFPDEDVEQDRLSPWLLRIELDRKKMTDKKLSMEQIA 177
Query: 60 --INENLALDKDTIGNLDTDKDTNENMAL------DKATKQKLASDKVTSEKI 104
I E D + I + D E + + D K++ + D V +KI
Sbjct: 178 KKIKEEFKDDLNVIFSDDNA----EKLVIRIRIINDDEEKEEDSEDDVFLKKI 226
>gnl|CDD|115367 pfam06705, SF-assemblin, SF-assemblin/beta giardin. This family
consists of several eukaryotic SF-assemblin and related
beta giardin proteins. During mitosis the
SF-assemblin-based cytoskeleton is reorganised; it
divides in prophase and is reduced to two dot-like
structures at each spindle pole in metaphase. During
anaphase, the two dots present at each pole are
connected again. In telophase there is an asymmetrical
outgrowth of new fibres. It has been suggested that
SF-assemblin is involved in re-establishing the
microtubular root system characteristic of interphase
cells after mitosis.
Length = 247
Score = 28.6 bits (64), Expect = 7.6
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 2 DKDQFRDIVDELALD-KDTINEILAT-DKDINENL-ALDRAIKKLALDKDTINKNLATEK 58
+++Q R ++ LA +NE +A D++ + +KK+A D I+ + TEK
Sbjct: 111 EREQRRSDIEHLATSLVKKVNECVAAIDEERISRKQEQSQILKKVAEDFARISARIDTEK 170
Query: 59 DINEN-----LALDKDTIGNLDTDKDTNENMALDKATKQKLASDKVTSEKIANVDEDVN 112
+ E + + GN + + +N LD+ K A E+IA DE V
Sbjct: 171 NTREAEVSALRSEIHEVKGNRNLVDEQFQNFVLDEIAAIKAALALEREERIAEDDEIVQ 229
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 28.6 bits (65), Expect = 9.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 12 ELALDKDTINEILATDKDINENLALDRAIKKLALDKDTINKNLATE 57
ELAL+ + ++ + N+AL++ +KK L +K L TE
Sbjct: 7 ELALE--VLIKVE--NNGAYSNIALNKVLKKSELSD--KDKALLTE 46
>gnl|CDD|234686 PRK00202, nusB, transcription antitermination protein NusB;
Reviewed.
Length = 137
Score = 27.5 bits (62), Expect = 9.7
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1 KDKDQFRDIVDELALDKDTINEILA---TDKDINENLALDRAIKKLAL 45
D FR +V + ++ ++E+++ D + ++RAI +LAL
Sbjct: 40 ADPAYFRSLVRGVVENQAELDELISPYLKDWTLERLDPVERAILRLAL 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.421
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,197,413
Number of extensions: 2484233
Number of successful extensions: 2026
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1992
Number of HSP's successfully gapped: 56
Length of query: 490
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 389
Effective length of database: 6,457,848
Effective search space: 2512102872
Effective search space used: 2512102872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)