RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6580
(490 letters)
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31,
cell membrane, disulfide bond, glycoprotein,
glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A
{Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A*
3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Length = 875
Score = 389 bits (1000), Expect = e-127
Identities = 147/393 (37%), Positives = 212/393 (53%), Gaps = 29/393 (7%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYPHGLQSYKVVHIDKHSYGL 178
V + ER +C P+ T+ +C RGCCW+ VP C+Y + ++ + G
Sbjct: 6 VVNELERINCIPDQPPTKATCDQRGCCWNPQGAVSVPWCYYSKNHSYHVEGNLVNTNAGF 65
Query: 179 DVY-WKNTIKSPYGSDVQMLQMSVKFETVQRLHVKITDANATRYEPSFPEVPMFNN---- 233
+GS+V + ++ +++T R H K+TD R+E V F+
Sbjct: 66 TARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLTDQTNNRFEVPHEHVQSFSGNAAA 125
Query: 234 ------------------RVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIYGLGEH- 274
R + LFDS G ++++QF+Q+S+RL S +YGLGEH
Sbjct: 126 SLTYQVEISRQPFSIKVTRRSNNRVLFDSSI-GPLLFADQFLQLSTRLPSTNVYGLGEHV 184
Query: 275 RNQFLLDTDWKTIVLWPLDGPP-QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIV 333
Q+ D +WKT ++ D P +G N YG F+L L +SGL+ GVFL SNA+E+V
Sbjct: 185 HQQYRHDMNWKTWPIFNRDTTPNGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVV 244
Query: 334 LQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNL 393
LQP PAITYR +GGILDFY FLG P V+ +YL+LIG P LP YW+LGFHL RY Y L
Sbjct: 245 LQPAPAITYRTIGGILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYEYGTL 304
Query: 394 SHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPI 452
+++ VV+RN A +P D DIDYM+ +F + F G E+V +LH G+ + I
Sbjct: 305 DNMREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSVDFKGFPEFVNELHNNGQKLVII 364
Query: 453 LDPGVASREDS--NYLPYVEGVEKGIFVMNSSG 483
+DP +++ S Y PY G + I+V +S G
Sbjct: 365 VDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDG 397
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 383 bits (984), Expect = e-124
Identities = 150/401 (37%), Positives = 209/401 (52%), Gaps = 32/401 (7%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYPHGLQSYKVVHIDKHSYGL 178
N P R +C P TE C RGCCW N+S +P CF+ Y V + S G+
Sbjct: 35 NDPVNVRINCIPEQFPTEGICAQRGCCWRPWNDSLIPWCFFVDN-HGYNVQDMTTTSIGV 93
Query: 179 DVYWKNTI-KSPYGSDVQMLQMSVKFETVQRLHVKITDANATRYEPSFPEVPMFNN---- 233
+ + +G+D+ + + + +T R KITD N RYE V F
Sbjct: 94 EAKLNRIPSPTLFGNDINSVLFTTQNQTPNRFRFKITDPNNRRYEVPHQYVKEFTGPTVS 153
Query: 234 ------------------RVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIYGLGEH- 274
R + LFD+ G +YS+Q++QIS+RL S YIYG+GE
Sbjct: 154 DTLYDVKVAQNPFSIQVIRKSNGKTLFDTSI-GPLVYSDQYLQISARLPSDYIYGIGEQV 212
Query: 275 RNQFLLDTDWKTIVLWPLD-GPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIV 333
+F D WKT ++ D P + N YG+ F++ + +SG + GVFL SNA+EI
Sbjct: 213 HKRFRHDLSWKTWPIFTRDQLPGDNNNNLYGHQTFFMCIEDTSGKSFGVFLMNSNAMEIF 272
Query: 334 LQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNL 393
+QPTP +TYRV GGILDFY LG P V+ QY L+G P +P YW+LGF L R+ YK+L
Sbjct: 273 IQPTPIVTYRVTGGILDFYILLGDTPEQVVQQYQQLVGLPAMPAYWNLGFQLSRWNYKSL 332
Query: 394 SHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPI 452
++ VV RN +AGIP DT DIDYME +F F GL ++VQDLH G+ ++ I
Sbjct: 333 DVVKEVVRRNREAGIPFDTQVTDIDYMEDKKDFTYDQVAFNGLPQFVQDLHDHGQKYVII 392
Query: 453 LDPGVA---SREDSNYLPYVEGVEKGIFVMNSSG-LPAEGK 489
LDP ++ + Y Y G + +++ S G P G+
Sbjct: 393 LDPAISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGE 433
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 381 bits (979), Expect = e-123
Identities = 151/402 (37%), Positives = 209/402 (51%), Gaps = 30/402 (7%)
Query: 116 CHRNVPDKERFDCFP-NGQVTEESCTARGCCWSISNNSKVPACFYPHGLQSYKVVHIDKH 174
+ D+E+ DC+P + E+CTARGC W SN+S VP C++ + L S V + H
Sbjct: 3 HPQFEKDEEKIDCYPDENGASAENCTARGCIWEASNSSGVPFCYFVNDLYSVSDVQYNSH 62
Query: 175 SYGLDVYWKNTIKSP--YGSDVQMLQMSVKFETVQRLHVKITDANATRYEPSFPEVP--- 229
D+ K+++ + + V L++ V + + L KI D N RYE P
Sbjct: 63 GATADISLKSSVYANAFPSTPVNPLRLDVTYHKNEMLQFKIYDPNKNRYEVPVPLNIPSM 122
Query: 230 ------------MFNN--------RVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIY 269
+ R + ++DS+ GF +S+ FI+IS+RL S Y+Y
Sbjct: 123 PSSTPEGQLYDVLIKKNPFGIEIRRKSTGTIIWDSQL-LGFTFSDMFIRISTRLPSKYLY 181
Query: 270 GLGEH-RNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRTSN 328
G GE + D +W T ++ D PP N YG HP+Y+ L G AHGV L SN
Sbjct: 182 GFGETEHRSYRRDLEWHTWGMFSRDQPPGYKKNSYGVHPYYMGLEED-GSAHGVLLLNSN 240
Query: 329 ALEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRY 388
A+++ QP PA+TYR GG+LDFY FLGP P V QY +LIG P + PYWSLGF LCRY
Sbjct: 241 AMDVTFQPLPALTYRTTGGVLDFYVFLGPTPELVTQQYTELIGRPVMVPYWSLGFQLCRY 300
Query: 389 GYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAKPFYGLKEYVQDLHKEGRH 448
GY+N S I S+ D V A IP D + DIDYMER +F L+ F G + + +G
Sbjct: 301 GYQNDSEIASLYDEMVAAQIPYDVQYSDIDYMERQLDFTLSPKFAGFPALINRMKADGMR 360
Query: 449 FIPILDPGVASREDSNYLPYVEGVEKGIFVMNSS-GLPAEGK 489
I ILDP ++ E Y + GVE +F+ + G GK
Sbjct: 361 VILILDPAISGNETQPYPAFTRGVEDDVFIKYPNDGDIVWGK 402
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 269 bits (690), Expect = 6e-83
Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 15/284 (5%)
Query: 213 ITDANATRYEPSFPEVPMF--NNRVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIYG 270
+ + P P+ + S + L N+ I S +I G
Sbjct: 7 YENKGVYKVVIGEPFPPIEFPLEQKISSNKSLSELGLTIVQQGNKVIVEKSLDLKEHIIG 66
Query: 271 LGEHRNQFLLDTDWKTIVLWPLDGPP--QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSN 328
LGE F LD K V++ +D + Y P ++++ G+A G F +++
Sbjct: 67 LGEK--AFELDRKRKRYVMYNVDAGAYKKYQDPLYVSIPLFISVK--DGVATGYFFNSAS 122
Query: 329 A--LEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLC 386
++ L+ + + ++FY GP+ DV+ +Y +L G P LPP W+ G+ +
Sbjct: 123 KVIFDVGLEEYDKVIVTIPEDSVEFYVIEGPRIEDVLEKYTELTGKPFLPPMWAFGYMIS 182
Query: 387 RYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAKP-FYGLKEYVQDLHKE 445
RY Y + +VD K G + V++DI YM+ + F F K+ + +LHK
Sbjct: 183 RYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWHPYRFPEPKKLIDELHKR 242
Query: 446 GRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSGLPAEGK 489
I I+D G+ D NY P++ G G F SG GK
Sbjct: 243 NVKLITIVDHGIRV--DQNYSPFLSG--MGKFCEIESGELFVGK 282
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 262 bits (671), Expect = 2e-80
Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 14/261 (5%)
Query: 235 VKSVDCLFDSRNLGGFMYSNQFIQISSRL-SSPYIYGLGEHRNQFLLDTDWKTIVLWPLD 293
+ ++ ++ G + + + + +YGLGE + D
Sbjct: 20 TEKIETAEEAFPYG-EISQKEGFAFTYIMDEDDIVYGLGESNRGINKR--GYCYISNCTD 76
Query: 294 GPP--QDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVL--QPTPAITYRVLGGIL 349
P +D + YG H F + S G+F + L + + L
Sbjct: 77 DPIHTEDKRSLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADL 133
Query: 350 DFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIP 409
D Y G D++ Q+ +IG +PP ++ GF R+GY ++V + IP
Sbjct: 134 DIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIP 193
Query: 410 LDTVWIDIDYMERHNNFVLAKP-FYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPY 468
+D +++DIDYM+ +F + + F E+V+++ + IPI+D GV + + Y Y
Sbjct: 194 IDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGV--KVEKGYEVY 251
Query: 469 VEGVEKGIFVMNSSGLPAEGK 489
EGV+ F G
Sbjct: 252 EEGVKNNYFCKREDGSDFVAA 272
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway,
glycoside hydrolase family 3 starch binding domain;
2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A*
2x2j_A*
Length = 1027
Score = 228 bits (582), Expect = 9e-66
Identities = 45/327 (13%), Positives = 92/327 (28%), Gaps = 66/327 (20%)
Query: 227 EVPMFNNRVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIYGLGEHRNQFL----LDT 282
EV ++ K +F R G + S + + YG GE ++ L+
Sbjct: 158 EVGTASSGNKCRGLMFVDRLYGNAIASVNKNFRNDAVKQEGFYGAGEVNCKYQDTYILER 217
Query: 283 DWKTIVLWPLD-----------------GPPQDGVNGYGYHPFYLNLN---ASSGLAHGV 322
+ + D P + Y P+ + S ++G
Sbjct: 218 TGIAMTNYNYDNLNYNQWDLRPPHHDGALNPDYYIPMYYAAPWLIVNGCAGTSEQYSYGW 277
Query: 323 FLRTSNALEIVLQPT-------PAITYRVLGGILDFYYFL--GPKPGDVISQYLDLIGY- 372
F+ + + T G D ++ G V++ + L G
Sbjct: 278 FMDNVSQSYMNTGDTTWNSGQEDLAYMGAQYGPFDQHFVYGAGGGMECVVTAFSLLQGKE 337
Query: 373 ---------PELPPYWSLGFHLCRYGYK-----------NLSHIQSVVDRNVKAGIPLDT 412
+PP + GF +G N ++ +V+ P +
Sbjct: 338 FENQVLNKRSVMPPKYVFGFFQGVFGTSSLLRAHMPAGENNISVEEIVEGYQNNNFPFEG 397
Query: 413 VWIDIDYMERHNNFVLAKPFYG-----------LKEYVQDLHKEGRHFIPILDPGV-ASR 460
+ +D+D + F F+ + + H +G + +
Sbjct: 398 LAVDVDMQDNLRVFTTKGEFWTANRVGTGGDPNNRSVFEWAHDKGLVCQTNITCFLRNDN 457
Query: 461 EDSNYLPYVEGVEKGIFVMNSSGLPAE 487
E +Y E+ ++ N S +
Sbjct: 458 EGQDYEVNQTLRERQLYTKNDSLTGTD 484
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 169 bits (430), Expect = 2e-45
Identities = 38/193 (19%), Positives = 61/193 (31%), Gaps = 13/193 (6%)
Query: 300 VNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVLQPTPAITYR-VLGGILDFYYFLGPK 358
+N H + S G F + + ++ G +D+Y+ G
Sbjct: 358 LNAGDKHKLKV-----SWKPDGGFFHLRHLDPLPANEQHELSLASETGKAIDYYFVAGDT 412
Query: 359 PGDVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDID 418
D+IS Y L G + P W+ GF R YK+ I + IP+D + +D
Sbjct: 413 KDDIISGYRQLTGKSVMLPKWAYGFWQSRERYKSSDEIIQNLKEYRDRKIPIDNIVLDWS 472
Query: 419 YMERH--NNFVLAKPFY-GLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKG 475
Y + K F+ K V +H + + P Y E KG
Sbjct: 473 YWPEDAWGSHDFDKQFFPDPKALVDKVHAMNAQIMISVWPKF----YPTTDNYKELNAKG 528
Query: 476 IFVMNSSGLPAEG 488
+
Sbjct: 529 FMFNRNLDEKNLD 541
Score = 28.0 bits (62), Expect = 9.3
Identities = 23/223 (10%), Positives = 48/223 (21%), Gaps = 29/223 (13%)
Query: 267 YIYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRT 326
+GLG+H+N ++ + + L N PF + S +G+
Sbjct: 181 GFFGLGQHQNGQ-VNYAGENVELTT--------YNLVISIPFLV-----SSRNYGLLWDN 226
Query: 327 SNALEIVLQPTPA------ITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWS 380
++ Y G +++ +
Sbjct: 227 NSITRFGDPREAQPLNQSLKLYDAEGKEGGLTVRYFVGDELKLTRVEADFNHQFYKQGNE 286
Query: 381 LGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYMERHNNFVLAKPFYGLKEYVQ 440
L + ++ Y + L L +
Sbjct: 287 LENPFPEEVAGAYKNNTLRIELEGSIEAQATGKHQFKMYNSGYAQLSLDGEVV-LDRWRM 345
Query: 441 DLHKEGRHFIPILDPGVASREDSNYLP-YVEGVEKGIFVMNSS 482
+ + +F L+ G V G F
Sbjct: 346 NWNPWYHNFYRELNAGDK-------HKLKVSWKPDGGFFHLRH 381
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 162 bits (412), Expect = 2e-43
Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 19/228 (8%)
Query: 268 IYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRTS 327
+YGLGE + + +T+ W DG Y PFY+ + +GV +
Sbjct: 162 VYGLGERFTALVRNG--QTVETWNRDGGT-STEQAYKNIPFYM-----TNRGYGVLVNHP 213
Query: 328 N--ALEIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSLGFHL 385
+ E+ + + + V L+++ GP P V+ +Y G P LPP WS G L
Sbjct: 214 QCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWL 273
Query: 386 CRYGYKNLSH--IQSVVDRNVKAGIPLDTVWIDIDYME--RHNNFVLAKPFYG-LKEYVQ 440
N + S +D + +PL D +M+ + +F + + ++
Sbjct: 274 TTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIR 333
Query: 441 DLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSGLPAEG 488
L +G ++P + + E EKG + G +
Sbjct: 334 RLKAKGLKICVWINPYI----GQKSPVFKELQEKGYLLKRPDGSLWQW 377
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil
domain, spectroscopy, cell motility factor; NMR {Homo
sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Length = 59
Score = 64.9 bits (158), Expect = 8e-14
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
VP K+R DC VT + C RGCC+ S VP CF P
Sbjct: 12 AVPAKDRVDCGYPH-VTPKECNNRGCCFD-SRIPGVPWCFKP 51
>1hi7_A PS2 protein; growth factor, cell motility, tumor suppressor,
trefoil domain, signal; NMR {Homo sapiens} SCOP:
g.16.1.1 PDB: 1ps2_A
Length = 60
Score = 64.2 bits (156), Expect = 2e-13
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
V +ER +C G VT C +GCC+ VP CFYP
Sbjct: 8 TVAPRERQNCGFPG-VTPSQCANKGCCFD-DTVRGVPWCFYP 47
>1pcp_A Porcine spasmolytic protein; growth factor; NMR {Sus scrofa} SCOP:
g.16.1.1 g.16.1.1 PDB: 1pos_A 1psp_A 2psp_A
Length = 106
Score = 60.4 bits (146), Expect = 1e-11
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYPHGLQSY 166
+ R +C G ++ E C AR CC+S +VP CF+P ++
Sbjct: 59 VMQVSARKNCGYPG-ISPEDCAARNCCFS-DTIPEVPWCFFPMSVEDC 104
Score = 57.7 bits (139), Expect = 1e-10
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYPHGLQSYK 167
K R +C G +T + C GCC+ S VP CF P Q +
Sbjct: 10 RQDPKNRVNCGFPG-ITSDQCFTSGCCFD-SQVPGVPWCFKPLPAQESE 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 5e-07
Identities = 69/456 (15%), Positives = 130/456 (28%), Gaps = 142/456 (31%)
Query: 70 TIGNLDTDKDTNENMA-----LDKATKQKLASDKVTSEKIANVDEDVNYGVCHR------ 118
+ N ++ + E + +D + +I ++ ++ + +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 119 ----NVPDKERFDCFPNGQVTEESC----TARGCCWSISNNSKVPACFYPHGLQSYKVVH 170
NV + + ++ F C T R + A + +
Sbjct: 248 LVLLNVQNAKAWNAFNLS------CKILLTTR----FKQVTDFLSA-------ATTTHIS 290
Query: 171 IDKHSYGLDVYWKNTIKSPYGSDVQMLQMSVKFETVQRLHVKITD--ANATRYEP----- 223
+D HS L + ++ + +K+ L + D P
Sbjct: 291 LDHHSMTL-------------TPDEVKSLLLKY-----LDCRPQDLPREVLTTNPRRLSI 332
Query: 224 ---SFPEVPMFNNRVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPYIYGLGEHRNQFLL 280
S + + K V+C L I+ S + P E+R F
Sbjct: 333 IAESIRDGLATWDNWKHVNC----DKL------TTIIESSLNVLEPA-----EYRKMFDR 377
Query: 281 ------DTDWKTIVL---WPLDGPPQDGVNGYGYHPFYLNLNASSGLA-----------H 320
TI+L W D D +N L
Sbjct: 378 LSVFPPSAHIPTILLSLIW-FDVIKSD-------VMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 321 GVFLRTSNALEIVLQPTPAITYRVLGGILDFYYFL-GPKPGDVISQYLDLIGYPELPPYW 379
++L L+ Y + I+D Y D+I YLD Y Y
Sbjct: 430 SIYLE--------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYF----YS 475
Query: 380 SLGFHLCRYGYKNLSHIQSVVDRNVKAGIPLDTVWIDIDYME---RHNNFVLAKPFYGLK 436
+G HL KN+ H + + V++D ++E RH++ +
Sbjct: 476 HIGHHL-----KNIEHPERMTL--------FRMVFLDFRFLEQKIRHDSTAWNAS-GSIL 521
Query: 437 EYVQDLHKEGRHFIPILDPGVASREDS--NYLPYVE 470
+Q L + DP ++ ++LP +E
Sbjct: 522 NTLQQLKFYKPYICDN-DPKYERLVNAILDFLPKIE 556
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-06
Identities = 67/413 (16%), Positives = 109/413 (26%), Gaps = 180/413 (43%)
Query: 161 HGLQSYKVVHIDKHSYGLDVYWKNTIKSPYGSDVQMLQMSVK------FETVQRLHVKIT 214
H L + + + V K IK+ + + + K F V + ++
Sbjct: 102 HAL----AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 215 DA------NATRYEPSFPEVPMFNNRVKSVDCLFDSRNLGGFMYS------NQFIQISSR 262
A N Y F E L R+L Y I+ S+
Sbjct: 158 -AIFGGQGNTDDY---FEE-------------L---RDL----YQTYHVLVGDLIKFSAE 193
Query: 263 L---------SSPYIYGLGEHRNQFLLDTDWKTIVLW---PLDGPPQDGVNGY-GYHPFY 309
+ ++ G L+ I+ W P + P +D Y P
Sbjct: 194 TLSELIRTTLDAEKVFTQG-------LN-----ILEWLENPSNTPDKD----YLLSIPIS 237
Query: 310 LNLNASSGLAHGVFLRTSNALEIVLQPTPAITYRVLGGIL-------------------D 350
L LAH ++ T+ L TP L G
Sbjct: 238 CPLIGVIQLAH--YVVTAKLLGF----TPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 351 FYYFLGPKPGDVISQYLDL---IG------YP--ELPPYWSLGFHLCRYGYKNLSHIQSV 399
F+ + + + + IG YP LPP S ++
Sbjct: 292 FF--------VSVRKAITVLFFIGVRCYEAYPNTSLPP----------------SILEDS 327
Query: 400 VDRN---------VKAGIPLDTVWIDIDYMERH---------------NNFVLAKP---F 432
++ N + + + V ++ H N V++ P
Sbjct: 328 LENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 433 YGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKGIFVMNSSGLP 485
YGL L K S D + +P+ E K F LP
Sbjct: 387 YGL---NLTLRKA----------KAPSGLDQSRIPFSE--RKLKFSN--RFLP 422
Score = 36.6 bits (84), Expect = 0.024
Identities = 38/206 (18%), Positives = 61/206 (29%), Gaps = 71/206 (34%)
Query: 188 SPYGSDVQMLQMSVKFETVQRLHVKITDANATRYEPSFPEVPMFN---NRV-----KSVD 239
SP ML S+ T +++ + N+ E+ + N N V +S+
Sbjct: 336 SP------ML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 240 CL-------------------FDSRNLGGFMYSNQFIQISSRLSSPYIYGLGEHRNQFLL 280
L F R L +SN+F+ ++S S L +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKL---KFSNRFLPVASPFHSHL---LVPASDLINK 441
Query: 281 DTDWKTIVLWP--LDGPPQDGVNGYGYHPFYLNLNASSGLAHGVFLRTSNALEIVLQP-- 336
D + + P D +G +L SG + I+ P
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGS-------DLRVLSGS-----ISERIVDCIIRLPVK 489
Query: 337 -----TPAITYRVLGGILDFYYFLGP 357
T+ ILDF GP
Sbjct: 490 WETTTQFKATH-----ILDF----GP 506
Score = 30.4 bits (68), Expect = 1.8
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 22/79 (27%)
Query: 2 DKDQFRDIVDELALDKDTINEILATDKDINENL------------ALDRAIKKLALDKDT 49
++ + +V+ + + EI +N N+ ALD L K
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEI------VNYNVENQQYVAAGDLRALDTVTNVLNFIKL- 1874
Query: 50 INKNLATEKDINENLALDK 68
+ + + + ++L+L++
Sbjct: 1875 --QKIDIIE-LQKSLSLEE 1890
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.17
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 10 VDELALDKDTI-------NEILATDKDINENLALDRAIKKLALDKD--TINKNLATEKDI 60
D L + ++I + L + D + +K D + ++ EK+
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQ-ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 61 NENLALDKDTIGNLDTD 77
N DK D D
Sbjct: 136 INNRIADKAFYQQPDAD 152
Score = 30.9 bits (69), Expect = 0.69
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 39 AIKKLALDKDTINKNLATEKDINENLALDKDTIGNLDTDKD---TNENMALDKATKQKLA 95
+I+K ++ K L E D ++++ D + ++ ++K
Sbjct: 86 SIRKWREEQR---KRLQ-ELDAASK-VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 96 SDKVTSEKIANVDEDV 111
+DK D D+
Sbjct: 141 ADK---AFYQQPDADI 153
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 29.4 bits (65), Expect = 2.0
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 116 CHRNVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYPH 161
C+ + + DC + +C++ CW NN C
Sbjct: 22 CNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTVE 67
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural
genomics, center for structural GEN infectious diseases;
HET: FFT; 2.46A {Campylobacter jejuni}
Length = 225
Score = 29.3 bits (67), Expect = 2.0
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 5 QFRDIVDELALDKDTINEILATDKD------INENLALD--------RAIKKLALDKDTI 50
+ R I D L+ +I ++ + NLA+ RA K++ K +
Sbjct: 95 RLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLEL 154
Query: 51 NKNLATEKDINENLALDKD 69
N E+++ +NL L D
Sbjct: 155 N-----EENLTQNLDLPLD 168
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 29.4 bits (66), Expect = 3.7
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 24 LATDKDINENLALDRAIKKLALDKDTINKNLATEKDINENLALDKDTIGNL--------- 74
L + + E + L+RA KK+ L+ I+ + + + + +
Sbjct: 680 LVSKDTVEEEV-LERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMF 738
Query: 75 --DTDKDTNENMALDK 88
++ E++ LD
Sbjct: 739 TATDNQKKLEDLNLDD 754
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine
bingding, protein binding; 2.25A {Neisseria
meningitidis}
Length = 275
Score = 28.4 bits (64), Expect = 5.0
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 17 KDTINEILATDKDINEN------LALDRAIKKLALDKDT----INKNLATEKDIN--ENL 64
KD IN + A+ DI EN + L+ A + D +N N A + E L
Sbjct: 150 KDGINPLTASKADIAENLKNIKIVELEAAQLPRSRA-DVDFAVVNGNYAISSGMKLTEAL 208
Query: 65 ALDKDTI-GNLDTDKDTNENMALDKATKQKLASDKV 99
+ N K +++ K + SD
Sbjct: 209 FQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAF 244
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein
binding; 2.15A {Neisseria meningitidis}
Length = 245
Score = 28.0 bits (63), Expect = 6.3
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 17 KDTINEILATDKDINEN------LALDRAIKKLALDKDT----INKNLATEKDIN--ENL 64
KD IN + A+ DI EN + L+ A + D +N N A + E L
Sbjct: 128 KDGINPLTASKADIAENLKNIKIVELEAAQLPRSRA-DVDFAVVNGNYAISSGMKLTEAL 186
Query: 65 ALDKDTI-GNLDTDKDTNENMALDKATKQKLASDKV 99
+ N K +++ K + SD
Sbjct: 187 FQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAF 222
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 28.1 bits (63), Expect = 7.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 14 ALDKDTINEILATDKDINENLAL 36
ALD T IL KDIN L L
Sbjct: 193 ALDPATTRSILELLKDINRRLGL 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.421
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,613,446
Number of extensions: 472093
Number of successful extensions: 891
Number of sequences better than 10.0: 1
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 31
Length of query: 490
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 393
Effective length of database: 3,993,456
Effective search space: 1569428208
Effective search space used: 1569428208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)