RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6580
(490 letters)
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
{Escherichia coli [TaxId: 562]}
Length = 338
Score = 118 bits (297), Expect = 2e-30
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 9/134 (6%)
Query: 361 DVISQYLDLIGYPELPPYWSLGFHLCRYGYKNLS--HIQSVVDRNVKAGIPLDTVWIDID 418
V+ +Y G P LPP WS G L N + S +D + +PL D
Sbjct: 2 AVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCF 61
Query: 419 YME--RHNNFVL-AKPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNYLPYVEGVEKG 475
+M+ + +F F + ++ L +G ++P + + E EKG
Sbjct: 62 WMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYI----GQKSPVFKELQEKG 117
Query: 476 IFVMNSSGLPAEGK 489
+ G +
Sbjct: 118 YLLKRPDGSLWQWD 131
>d2f2ha2 b.30.5.11 (A:1-247) Putative glucosidase YicI, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 247
Score = 82.3 bits (203), Expect = 2e-18
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 254 NQFIQISSRLS-SPYIYGLGEHRNQFLLDTDWKTIVLWPLDGPPQDGVNGYGYHPFYLNL 312
++ L +YGLGE + +T+ W DG Y PFY+
Sbjct: 147 RNYMFERLDLGVGETVYGLGERFTAL--VRNGQTVETWNRDGGTSTE-QAYKNIPFYM-- 201
Query: 313 NASSGLAHGVFLRTSN--ALEIVLQPTPAITYRVLGGILDFYYFLGPKP 359
+ +GV + + E+ + + + V L+++ GP P
Sbjct: 202 ---TNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTP 247
>d2pspa1 g.16.1.1 (A:1-53) Pancreatic spasmolytic polypeptide {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 53
Score = 63.7 bits (155), Expect = 7e-14
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
K R +C G +T + C GCC+ S VP CF P
Sbjct: 10 RQDPKNRVNCGFPG-ITSDQCFTSGCCFD-SQVPGVPWCFKP 49
>d1hi7a_ g.16.1.1 (A:) PNR-2/PS2, TFF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 60
Score = 63.7 bits (155), Expect = 9e-14
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
V +ER +C G VT C +GCC+ VP CFYP
Sbjct: 8 TVAPRERQNCGFPG-VTPSQCANKGCCFD-DTVRGVPWCFYP 47
>d1e9ta_ g.16.1.1 (A:) Intestinal trefoil factor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 59
Score = 63.0 bits (153), Expect = 2e-13
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 119 NVPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
VP K+R DC VT + C RGCC+ S VP CF P
Sbjct: 12 AVPAKDRVDCGYPH-VTPKECNNRGCCFD-SRIPGVPWCFKP 51
>d2pspa2 g.16.1.1 (A:54-106) Pancreatic spasmolytic polypeptide {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 53
Score = 60.6 bits (147), Expect = 8e-13
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 120 VPDKERFDCFPNGQVTEESCTARGCCWSISNNSKVPACFYP 160
+ R +C G ++ E C AR CC+S +VP CF+P
Sbjct: 7 MQVSARKNCGYPG-ISPEDCAARNCCFS-DTIPEVPWCFFP 45
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic
domain {Thermotoga maritima [TaxId: 2336]}
Length = 348
Score = 47.1 bits (111), Expect = 3e-06
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 373 PELPPYWSLGFHLCRYGYKNLSHIQSVVDRNVK--AGIPLDTVWIDIDYMERHNNFVL-A 429
P+ P C + + L +N+K P + ID Y + ++++
Sbjct: 3 PKHTP-----TGWCSWYHYFLDLTWEETLKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTR 57
Query: 430 KPFYGLKEYVQDLHKEGRHFIPILDPGVASREDSNY 465
F ++E + + + G P S +
Sbjct: 58 GDFPSVEEMAKVIAENGFIPGIWTAPFSVSETSDVF 93
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella
sp. [TaxId: 479]}
Length = 262
Score = 28.8 bits (64), Expect = 1.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 1 KDKDQFRDIVDELALDKDTINEILATDKDI 30
++KD ++ L LD D I ++ ++D D+
Sbjct: 58 QEKDISSKLLKALNLDLDNIIDVSSSDTDL 87
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 27.2 bits (60), Expect = 2.2
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 20/98 (20%)
Query: 15 LDKDTINEILATDKDINENLALDRAIKKL----------------ALDKDTINKNLATEK 58
L I ++ KD D + L AL D + A +
Sbjct: 1 LTDSEIASMI---KDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQ 57
Query: 59 DINENLALDKDTIGNLDTDKDTNENMALDKATKQKLAS 96
I++ A + D D +DK T Q A+
Sbjct: 58 VIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQT-QDFAA 94
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 27.1 bits (60), Expect = 3.3
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 3 KDQFRDIVDELALDKDTINEILAT 26
+ +++ LA +A
Sbjct: 104 QILIPELIGYLAKQSVFEPGNIAQ 127
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 27.1 bits (59), Expect = 4.9
Identities = 38/244 (15%), Positives = 69/244 (28%), Gaps = 21/244 (8%)
Query: 148 ISNNSKVPACFYPHGLQSYKVVHIDKHSYGLDVYWKNTIKSPYGSDVQMLQMSVKFETVQ 207
S PA + G+ + + V + ++ N I S YG D + + +
Sbjct: 51 FSTGGDKPAIWLDAGIHAREWV-----TQATALWTANKIVSDYGKDPSITSILDALDIFL 105
Query: 208 RLHVKITDANATRYEPSFPEVPMFNNRVKSVDCLFDSRNLGGFMYSNQFIQISSRLSSPY 267
++ + + +RN S
Sbjct: 106 LPVTNPDGYVFSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHG 165
Query: 268 IYGLGEHRNQFLLD---TDWKTIVLWPLDGPPQDGVNGYGYHPFYL-NLNASSGLAHGVF 323
E + ++D + K L Q + YGY L + + S +A
Sbjct: 166 PSANSEVEVKSIVDFIKSHGKVKAFIILHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAA 225
Query: 324 LRTSNAL--EIVLQPTPAITYRVLGGILDFYYFLGPKPGDVISQYLDLIGYPELPPYWSL 381
+ + + P ++ Y+ GG +D+ Y G K EL
Sbjct: 226 QSLRSLHGTKYKVGPICSVIYQASGGSIDWSYDYGIKYSFAF----------ELRDTGRY 275
Query: 382 GFHL 385
GF L
Sbjct: 276 GFLL 279
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.421
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,874,340
Number of extensions: 91624
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 15
Length of query: 490
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,185,626
Effective search space: 475436026
Effective search space used: 475436026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)